Multiple sequence alignment - TraesCS5B01G065000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G065000 chr5B 100.000 3947 0 0 1 3947 72631943 72627997 0.000000e+00 7289.0
1 TraesCS5B01G065000 chr5B 86.404 2008 210 36 523 2510 63631876 63633840 0.000000e+00 2137.0
2 TraesCS5B01G065000 chr5B 83.739 2177 229 68 416 2540 72252722 72254825 0.000000e+00 1943.0
3 TraesCS5B01G065000 chr5B 86.318 1776 171 39 399 2147 63844073 63845803 0.000000e+00 1868.0
4 TraesCS5B01G065000 chr5B 89.583 432 33 5 2884 3306 72427063 72426635 4.490000e-149 538.0
5 TraesCS5B01G065000 chr5D 93.198 2073 100 14 396 2461 58946767 58948805 0.000000e+00 3009.0
6 TraesCS5B01G065000 chr5D 85.272 2037 236 37 523 2538 58659031 58661024 0.000000e+00 2041.0
7 TraesCS5B01G065000 chr5D 83.579 2107 211 72 468 2508 58677571 58679608 0.000000e+00 1849.0
8 TraesCS5B01G065000 chr5D 90.014 691 53 8 2884 3571 58949310 58949987 0.000000e+00 880.0
9 TraesCS5B01G065000 chr5D 87.204 422 19 11 396 817 58945825 58946211 7.780000e-122 448.0
10 TraesCS5B01G065000 chr5D 89.179 268 25 4 1 267 58945283 58945547 8.180000e-87 331.0
11 TraesCS5B01G065000 chr5D 83.382 343 27 15 2535 2877 58948899 58949211 1.390000e-74 291.0
12 TraesCS5B01G065000 chr5A 83.954 1047 100 26 673 1698 47120790 47121789 0.000000e+00 941.0
13 TraesCS5B01G065000 chr5A 88.199 161 8 4 523 681 47115682 47115833 8.710000e-42 182.0
14 TraesCS5B01G065000 chr5A 90.741 54 4 1 3636 3688 669701015 669700962 1.970000e-08 71.3
15 TraesCS5B01G065000 chr2A 78.073 716 140 12 722 1426 14749891 14750600 1.680000e-118 436.0
16 TraesCS5B01G065000 chr2A 76.500 400 83 8 1100 1492 23296696 23296301 1.440000e-49 207.0
17 TraesCS5B01G065000 chr2A 77.626 219 44 4 957 1173 25546564 25546779 1.150000e-25 128.0
18 TraesCS5B01G065000 chr2A 86.957 69 8 1 3621 3688 601805693 601805761 4.230000e-10 76.8
19 TraesCS5B01G065000 chr2A 88.136 59 6 1 3631 3688 499563525 499563583 7.080000e-08 69.4
20 TraesCS5B01G065000 chr1B 84.307 274 40 3 3677 3947 332266211 332265938 8.410000e-67 265.0
21 TraesCS5B01G065000 chr1B 81.784 269 46 3 3681 3947 36594034 36594301 5.130000e-54 222.0
22 TraesCS5B01G065000 chr1B 81.784 269 46 3 3681 3947 36617370 36617637 5.130000e-54 222.0
23 TraesCS5B01G065000 chr1B 80.297 269 46 6 3681 3947 36555179 36555442 3.110000e-46 196.0
24 TraesCS5B01G065000 chr7A 82.639 288 49 1 3661 3947 602074103 602074390 1.820000e-63 254.0
25 TraesCS5B01G065000 chr7A 85.484 62 7 2 3628 3688 320984642 320984702 3.290000e-06 63.9
26 TraesCS5B01G065000 chr6D 83.643 269 31 7 3681 3947 45491080 45491337 1.420000e-59 241.0
27 TraesCS5B01G065000 chrUn 82.772 267 43 3 3683 3947 401227057 401227322 6.590000e-58 235.0
28 TraesCS5B01G065000 chrUn 82.022 267 45 3 3683 3947 2859756 2860021 1.430000e-54 224.0
29 TraesCS5B01G065000 chr6A 84.305 223 33 2 3720 3941 569604828 569605049 2.390000e-52 217.0
30 TraesCS5B01G065000 chr3B 89.437 142 13 2 726 866 706754719 706754859 1.130000e-40 178.0
31 TraesCS5B01G065000 chr3B 80.597 201 30 9 723 921 139222333 139222526 3.180000e-31 147.0
32 TraesCS5B01G065000 chr3B 97.059 34 1 0 3655 3688 720220200 720220167 1.530000e-04 58.4
33 TraesCS5B01G065000 chr2B 78.571 266 48 8 3687 3947 733095614 733095353 2.440000e-37 167.0
34 TraesCS5B01G065000 chr2D 89.394 66 6 1 3624 3688 59332132 59332197 9.090000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G065000 chr5B 72627997 72631943 3946 True 7289.0 7289 100.0000 1 3947 1 chr5B.!!$R2 3946
1 TraesCS5B01G065000 chr5B 63631876 63633840 1964 False 2137.0 2137 86.4040 523 2510 1 chr5B.!!$F1 1987
2 TraesCS5B01G065000 chr5B 72252722 72254825 2103 False 1943.0 1943 83.7390 416 2540 1 chr5B.!!$F3 2124
3 TraesCS5B01G065000 chr5B 63844073 63845803 1730 False 1868.0 1868 86.3180 399 2147 1 chr5B.!!$F2 1748
4 TraesCS5B01G065000 chr5D 58659031 58661024 1993 False 2041.0 2041 85.2720 523 2538 1 chr5D.!!$F1 2015
5 TraesCS5B01G065000 chr5D 58677571 58679608 2037 False 1849.0 1849 83.5790 468 2508 1 chr5D.!!$F2 2040
6 TraesCS5B01G065000 chr5D 58945283 58949987 4704 False 991.8 3009 88.5954 1 3571 5 chr5D.!!$F3 3570
7 TraesCS5B01G065000 chr5A 47120790 47121789 999 False 941.0 941 83.9540 673 1698 1 chr5A.!!$F2 1025
8 TraesCS5B01G065000 chr2A 14749891 14750600 709 False 436.0 436 78.0730 722 1426 1 chr2A.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 85 0.027979 CGAATGATCCGCGTGCATTT 59.972 50.0 16.03 1.07 32.80 2.32 F
995 2103 0.321475 TGCGTCCATCTCACATGCAA 60.321 50.0 0.00 0.00 0.00 4.08 F
1842 3000 0.594602 TACTTTTGCTGCTGCTGCTG 59.405 50.0 27.67 16.73 40.48 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 2671 0.324368 TCCGAGGCTGGATGTGTAGT 60.324 55.0 0.0 0.0 31.53 2.73 R
2227 3404 0.519077 CAAAGGTTTGCTCCTCGCTC 59.481 55.0 0.0 0.0 40.11 5.03 R
3662 4965 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.0 0.0 0.0 37.46 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 4.327357 GTGCTATATTGGTCGAATGATCCG 59.673 45.833 0.00 0.00 0.00 4.18
82 84 0.809636 TCGAATGATCCGCGTGCATT 60.810 50.000 15.21 15.21 35.14 3.56
83 85 0.027979 CGAATGATCCGCGTGCATTT 59.972 50.000 16.03 1.07 32.80 2.32
123 125 9.889128 ATTTAAGGTTTCAAATATGGGATTGTG 57.111 29.630 0.00 0.00 0.00 3.33
128 130 7.180766 AGGTTTCAAATATGGGATTGTGATTGT 59.819 33.333 0.00 0.00 0.00 2.71
129 131 7.492344 GGTTTCAAATATGGGATTGTGATTGTC 59.508 37.037 0.00 0.00 0.00 3.18
131 133 6.193504 TCAAATATGGGATTGTGATTGTCCA 58.806 36.000 0.00 0.00 33.62 4.02
134 136 3.071874 TGGGATTGTGATTGTCCAGAC 57.928 47.619 0.00 0.00 33.62 3.51
165 167 2.294979 GGTCGACCCACTTCTTTTTGT 58.705 47.619 24.75 0.00 0.00 2.83
198 200 3.904800 ACATGTTCGTGGACATATGGA 57.095 42.857 7.80 0.00 38.15 3.41
209 211 7.741785 TCGTGGACATATGGATTAAATTAGGT 58.258 34.615 7.80 0.00 0.00 3.08
220 222 8.343168 TGGATTAAATTAGGTAAGTGTGGTTG 57.657 34.615 0.00 0.00 0.00 3.77
221 223 7.394923 TGGATTAAATTAGGTAAGTGTGGTTGG 59.605 37.037 0.00 0.00 0.00 3.77
222 224 7.147966 GGATTAAATTAGGTAAGTGTGGTTGGG 60.148 40.741 0.00 0.00 0.00 4.12
256 258 5.126061 AGTTTATCTTGGGCAGTTGCATTAG 59.874 40.000 6.43 0.06 44.36 1.73
261 263 2.722094 TGGGCAGTTGCATTAGGTTAG 58.278 47.619 6.43 0.00 44.36 2.34
267 269 5.763204 GGCAGTTGCATTAGGTTAGCTATAA 59.237 40.000 6.43 0.00 44.36 0.98
268 270 6.431234 GGCAGTTGCATTAGGTTAGCTATAAT 59.569 38.462 6.43 0.00 44.36 1.28
269 271 7.040409 GGCAGTTGCATTAGGTTAGCTATAATT 60.040 37.037 6.43 0.00 44.36 1.40
270 272 8.999431 GCAGTTGCATTAGGTTAGCTATAATTA 58.001 33.333 0.00 0.00 41.59 1.40
281 283 9.299465 AGGTTAGCTATAATTAGTACCACTCTC 57.701 37.037 9.13 0.00 31.48 3.20
333 335 7.307493 TCGATTGATGGCTATAACATATTGC 57.693 36.000 0.00 0.00 0.00 3.56
334 336 6.316140 TCGATTGATGGCTATAACATATTGCC 59.684 38.462 13.60 13.60 43.49 4.52
349 351 1.264295 TTGCCATGCAACAATAGCCA 58.736 45.000 0.00 0.00 43.99 4.75
350 352 1.264295 TGCCATGCAACAATAGCCAA 58.736 45.000 0.00 0.00 34.76 4.52
353 355 2.419021 GCCATGCAACAATAGCCAATGT 60.419 45.455 0.00 0.00 0.00 2.71
354 356 3.181477 GCCATGCAACAATAGCCAATGTA 60.181 43.478 0.00 0.00 0.00 2.29
355 357 4.680172 GCCATGCAACAATAGCCAATGTAA 60.680 41.667 0.00 0.00 0.00 2.41
356 358 5.603596 CCATGCAACAATAGCCAATGTAAT 58.396 37.500 0.00 0.00 0.00 1.89
357 359 6.738176 GCCATGCAACAATAGCCAATGTAATA 60.738 38.462 0.00 0.00 0.00 0.98
358 360 7.208777 CCATGCAACAATAGCCAATGTAATAA 58.791 34.615 0.00 0.00 0.00 1.40
359 361 7.710044 CCATGCAACAATAGCCAATGTAATAAA 59.290 33.333 0.00 0.00 0.00 1.40
360 362 8.542132 CATGCAACAATAGCCAATGTAATAAAC 58.458 33.333 0.00 0.00 0.00 2.01
362 364 8.090831 TGCAACAATAGCCAATGTAATAAACAA 58.909 29.630 0.00 0.00 42.70 2.83
363 365 8.379902 GCAACAATAGCCAATGTAATAAACAAC 58.620 33.333 0.00 0.00 42.70 3.32
364 366 9.416794 CAACAATAGCCAATGTAATAAACAACA 57.583 29.630 0.00 0.00 42.70 3.33
367 369 9.585099 CAATAGCCAATGTAATAAACAACATGT 57.415 29.630 0.00 0.00 42.70 3.21
377 379 9.168451 TGTAATAAACAACATGTATAGTGGTGG 57.832 33.333 0.00 0.00 38.59 4.61
378 380 7.639113 AATAAACAACATGTATAGTGGTGGG 57.361 36.000 0.00 0.00 38.59 4.61
379 381 2.999331 ACAACATGTATAGTGGTGGGC 58.001 47.619 0.00 0.00 38.59 5.36
381 383 3.778075 ACAACATGTATAGTGGTGGGCTA 59.222 43.478 0.00 0.00 38.59 3.93
382 384 4.412199 ACAACATGTATAGTGGTGGGCTAT 59.588 41.667 0.00 0.00 38.59 2.97
383 385 5.605069 ACAACATGTATAGTGGTGGGCTATA 59.395 40.000 0.00 0.00 38.59 1.31
384 386 6.100569 ACAACATGTATAGTGGTGGGCTATAA 59.899 38.462 0.00 0.00 38.59 0.98
385 387 6.360370 ACATGTATAGTGGTGGGCTATAAG 57.640 41.667 0.00 0.00 34.40 1.73
386 388 6.082031 ACATGTATAGTGGTGGGCTATAAGA 58.918 40.000 0.00 0.00 34.40 2.10
388 390 7.071950 ACATGTATAGTGGTGGGCTATAAGAAA 59.928 37.037 0.00 0.00 34.40 2.52
389 391 7.440505 TGTATAGTGGTGGGCTATAAGAAAA 57.559 36.000 0.00 0.00 34.40 2.29
390 392 8.041143 TGTATAGTGGTGGGCTATAAGAAAAT 57.959 34.615 0.00 0.00 34.40 1.82
392 394 9.433153 GTATAGTGGTGGGCTATAAGAAAATAC 57.567 37.037 0.00 0.00 34.40 1.89
394 396 7.685849 AGTGGTGGGCTATAAGAAAATACTA 57.314 36.000 0.00 0.00 0.00 1.82
608 1710 4.598894 CAGGGCCTCGATCCGCTG 62.599 72.222 0.95 12.75 36.02 5.18
677 1779 2.284405 GAGAACCTCCCGGACCCA 60.284 66.667 0.73 0.00 0.00 4.51
984 2092 4.473520 CCCTTCCGCTGCGTCCAT 62.474 66.667 21.59 0.00 0.00 3.41
990 2098 2.125952 CGCTGCGTCCATCTCACA 60.126 61.111 14.93 0.00 0.00 3.58
995 2103 0.321475 TGCGTCCATCTCACATGCAA 60.321 50.000 0.00 0.00 0.00 4.08
1025 2133 2.586792 GTACCAGGGCCAGCTCAG 59.413 66.667 6.18 0.00 0.00 3.35
1439 2547 1.032657 ATCCTGTCGGAGTGTCTCGG 61.033 60.000 0.00 0.00 44.06 4.63
1481 2589 0.674895 AGAGTCAGGATTGGCAACGC 60.675 55.000 0.00 0.00 42.51 4.84
1561 2669 3.690139 AGACACTGTCATCACGGTACTAG 59.310 47.826 11.80 0.00 40.45 2.57
1562 2670 3.418995 ACACTGTCATCACGGTACTAGT 58.581 45.455 0.00 0.00 40.45 2.57
1563 2671 4.582869 ACACTGTCATCACGGTACTAGTA 58.417 43.478 0.00 0.00 40.45 1.82
1766 2919 1.065126 CCCGCCTTCCTCAGATTCTTT 60.065 52.381 0.00 0.00 0.00 2.52
1841 2999 1.201647 CATACTTTTGCTGCTGCTGCT 59.798 47.619 27.67 12.94 40.48 4.24
1842 3000 0.594602 TACTTTTGCTGCTGCTGCTG 59.405 50.000 27.67 16.73 40.48 4.41
1922 3090 2.103042 GTGATCACCTCGCTGGCAC 61.103 63.158 15.31 0.00 40.22 5.01
1962 3130 1.605058 AAGAGGTCGGTCCCATCGTG 61.605 60.000 0.00 0.00 36.75 4.35
2079 3247 4.885907 AGGGTGCTCAAAGATGTAATGATG 59.114 41.667 0.00 0.00 0.00 3.07
2128 3296 2.167900 CTGTCAGCAGATGAGATGACCA 59.832 50.000 9.48 0.00 45.28 4.02
2167 3344 3.629398 GCCTAATGAGAAATGGGTCAGTG 59.371 47.826 0.00 0.00 0.00 3.66
2176 3353 6.151648 TGAGAAATGGGTCAGTGAATTTGATC 59.848 38.462 6.09 5.35 0.00 2.92
2193 3370 2.035193 TGATCTTGCTATCTGTCGGAGC 59.965 50.000 0.00 0.00 36.72 4.70
2227 3404 4.773323 GGATTGAGTCCTTGGACTTTTG 57.227 45.455 21.61 0.00 44.16 2.44
2265 3442 1.548973 GCGACGATGACCCTATTGCG 61.549 60.000 0.00 0.00 0.00 4.85
2284 3461 2.780993 CGCCGGTTAAATTCATCACAC 58.219 47.619 1.90 0.00 0.00 3.82
2286 3463 3.619483 CGCCGGTTAAATTCATCACACTA 59.381 43.478 1.90 0.00 0.00 2.74
2311 3488 5.219633 GGGTTAGTGTTGTTTTGCAGTATG 58.780 41.667 0.00 0.00 40.87 2.39
2313 3490 5.685511 GGTTAGTGTTGTTTTGCAGTATGTG 59.314 40.000 0.00 0.00 39.31 3.21
2338 3520 6.019075 GCAATTCTACATATGACGCACTGTTA 60.019 38.462 10.38 0.00 0.00 2.41
2350 3532 3.865745 ACGCACTGTTATAGATTGTCAGC 59.134 43.478 0.00 0.00 0.00 4.26
2359 3544 8.196802 TGTTATAGATTGTCAGCATGTGTTAC 57.803 34.615 0.00 0.00 37.40 2.50
2414 3599 9.884465 GCTAACATGATTAGTTTGAATACATCC 57.116 33.333 0.00 0.00 0.00 3.51
2435 3620 5.413499 TCCGTGAAGTAATTTAGTAGTGCC 58.587 41.667 0.00 0.00 0.00 5.01
2446 3635 9.931210 GTAATTTAGTAGTGCCATTGTACAATC 57.069 33.333 18.25 9.03 0.00 2.67
2456 3645 4.641989 GCCATTGTACAATCTGACCATCTT 59.358 41.667 18.25 0.00 0.00 2.40
2457 3646 5.822519 GCCATTGTACAATCTGACCATCTTA 59.177 40.000 18.25 0.00 0.00 2.10
2458 3647 6.017605 GCCATTGTACAATCTGACCATCTTAG 60.018 42.308 18.25 2.81 0.00 2.18
2459 3648 6.017605 CCATTGTACAATCTGACCATCTTAGC 60.018 42.308 18.25 0.00 0.00 3.09
2461 3650 5.664457 TGTACAATCTGACCATCTTAGCAG 58.336 41.667 0.00 0.00 0.00 4.24
2462 3651 3.539604 ACAATCTGACCATCTTAGCAGC 58.460 45.455 0.00 0.00 0.00 5.25
2463 3652 2.522836 ATCTGACCATCTTAGCAGCG 57.477 50.000 0.00 0.00 0.00 5.18
2469 3658 4.809673 TGACCATCTTAGCAGCGTATATG 58.190 43.478 0.00 0.00 0.00 1.78
2479 3668 2.477694 GCAGCGTATATGTTGCTTGCAA 60.478 45.455 22.32 3.70 42.09 4.08
2480 3669 3.793129 GCAGCGTATATGTTGCTTGCAAT 60.793 43.478 22.32 0.00 42.09 3.56
2564 3772 8.534496 AGGCATGAATTTATTTAGCTTTCAACT 58.466 29.630 0.00 0.00 30.81 3.16
2566 3774 9.143631 GCATGAATTTATTTAGCTTTCAACTGT 57.856 29.630 0.00 0.00 30.81 3.55
2572 3780 7.801716 TTATTTAGCTTTCAACTGTGTGACT 57.198 32.000 0.00 0.00 0.00 3.41
2575 3783 4.137116 AGCTTTCAACTGTGTGACTACA 57.863 40.909 0.00 0.00 0.00 2.74
2579 3787 5.237344 GCTTTCAACTGTGTGACTACAAGAT 59.763 40.000 0.00 0.00 38.82 2.40
2586 3794 7.575414 ACTGTGTGACTACAAGATATCCTAG 57.425 40.000 0.00 0.00 38.82 3.02
2587 3795 6.547880 ACTGTGTGACTACAAGATATCCTAGG 59.452 42.308 0.82 0.82 38.82 3.02
2623 3831 3.094484 ACACCAAGTCCCAACTTTCAA 57.906 42.857 0.00 0.00 43.28 2.69
2626 3834 3.066760 CACCAAGTCCCAACTTTCAAGAC 59.933 47.826 0.00 0.00 43.28 3.01
2652 3860 3.817647 AGAGGTTGCATGTTTCTCAGTTC 59.182 43.478 0.00 0.00 0.00 3.01
2667 3875 6.206395 TCTCAGTTCTGATTTTGCACAAAA 57.794 33.333 10.70 10.70 43.48 2.44
2708 3916 7.175816 TGCATGTTGTTTCCACTAGCTAAATTA 59.824 33.333 0.00 0.00 0.00 1.40
2709 3917 7.484959 GCATGTTGTTTCCACTAGCTAAATTAC 59.515 37.037 0.00 0.00 0.00 1.89
2710 3918 8.730680 CATGTTGTTTCCACTAGCTAAATTACT 58.269 33.333 0.00 0.00 0.00 2.24
2711 3919 9.953565 ATGTTGTTTCCACTAGCTAAATTACTA 57.046 29.630 0.00 0.00 0.00 1.82
2712 3920 9.781633 TGTTGTTTCCACTAGCTAAATTACTAA 57.218 29.630 0.00 0.00 0.00 2.24
2714 3922 8.782339 TGTTTCCACTAGCTAAATTACTAACC 57.218 34.615 0.00 0.00 0.00 2.85
2715 3923 8.599792 TGTTTCCACTAGCTAAATTACTAACCT 58.400 33.333 0.00 0.00 0.00 3.50
2716 3924 8.880750 GTTTCCACTAGCTAAATTACTAACCTG 58.119 37.037 0.00 0.00 0.00 4.00
2717 3925 7.729124 TCCACTAGCTAAATTACTAACCTGT 57.271 36.000 0.00 0.00 0.00 4.00
2718 3926 8.142485 TCCACTAGCTAAATTACTAACCTGTT 57.858 34.615 0.00 0.00 0.00 3.16
2719 3927 8.599792 TCCACTAGCTAAATTACTAACCTGTTT 58.400 33.333 0.00 0.00 0.00 2.83
2720 3928 9.227777 CCACTAGCTAAATTACTAACCTGTTTT 57.772 33.333 0.00 0.00 0.00 2.43
2767 3975 5.652014 CCTTGGTTAATTAGCCATGAACAGA 59.348 40.000 26.18 10.02 36.43 3.41
2803 4011 1.674359 TATGCAATACGCCCCACTTG 58.326 50.000 0.00 0.00 41.33 3.16
2818 4026 1.001487 CACTTGCTGGCGAAATTCACA 60.001 47.619 0.00 0.00 0.00 3.58
2836 4044 2.489329 CACACATTGCCAGGACCTTAAG 59.511 50.000 0.00 0.00 0.00 1.85
2862 4070 5.308014 TGCATTTCGATATACAGCCTCAAT 58.692 37.500 0.00 0.00 0.00 2.57
2867 4075 9.173939 CATTTCGATATACAGCCTCAATTTTTC 57.826 33.333 0.00 0.00 0.00 2.29
2877 4085 7.224297 ACAGCCTCAATTTTTCTGTTCTACTA 58.776 34.615 0.00 0.00 34.69 1.82
2878 4086 7.885399 ACAGCCTCAATTTTTCTGTTCTACTAT 59.115 33.333 0.00 0.00 34.69 2.12
2879 4087 8.180267 CAGCCTCAATTTTTCTGTTCTACTATG 58.820 37.037 0.00 0.00 0.00 2.23
2881 4089 8.515414 GCCTCAATTTTTCTGTTCTACTATGTT 58.485 33.333 0.00 0.00 0.00 2.71
2882 4090 9.831737 CCTCAATTTTTCTGTTCTACTATGTTG 57.168 33.333 0.00 0.00 0.00 3.33
2895 4195 5.926542 TCTACTATGTTGTTGTCTGCTTCAC 59.073 40.000 0.00 0.00 0.00 3.18
2896 4196 4.708177 ACTATGTTGTTGTCTGCTTCACT 58.292 39.130 0.00 0.00 0.00 3.41
2897 4197 4.752101 ACTATGTTGTTGTCTGCTTCACTC 59.248 41.667 0.00 0.00 0.00 3.51
2912 4212 4.890581 GCTTCACTCCTCCTAATCAGTCTA 59.109 45.833 0.00 0.00 0.00 2.59
2938 4238 5.866335 TTTGTTATGCCTTCGTTCGTATT 57.134 34.783 0.00 0.00 0.00 1.89
2947 4247 4.201950 GCCTTCGTTCGTATTAGGTGTAGA 60.202 45.833 0.00 0.00 0.00 2.59
2955 4255 0.325860 ATTAGGTGTAGACCCGGCCA 60.326 55.000 5.21 0.00 44.40 5.36
2969 4269 1.673665 GGCCACTCACCAGCAGAAG 60.674 63.158 0.00 0.00 0.00 2.85
2970 4270 2.331132 GCCACTCACCAGCAGAAGC 61.331 63.158 0.00 0.00 42.56 3.86
3000 4300 1.131883 GCAAGCATCGCAACTGAGATT 59.868 47.619 0.00 0.00 32.21 2.40
3001 4301 2.782163 CAAGCATCGCAACTGAGATTG 58.218 47.619 0.00 0.00 32.21 2.67
3012 4312 2.483876 ACTGAGATTGTTGACACGTGG 58.516 47.619 21.57 1.66 0.00 4.94
3037 4337 1.123077 TGGAGTATGCACTAGCCTGG 58.877 55.000 0.00 0.00 41.13 4.45
3138 4438 5.163227 TGCTCTATTGCCAGAGATCATTCTT 60.163 40.000 10.38 0.00 44.11 2.52
3152 4452 8.482128 AGAGATCATTCTTCGAATTAAGGAACT 58.518 33.333 13.72 13.72 32.71 3.01
3166 4466 8.514330 AATTAAGGAACTGTGTGTAACTGAAA 57.486 30.769 0.00 0.00 40.86 2.69
3167 4467 7.925043 TTAAGGAACTGTGTGTAACTGAAAA 57.075 32.000 0.00 0.00 40.86 2.29
3168 4468 6.827586 AAGGAACTGTGTGTAACTGAAAAA 57.172 33.333 0.00 0.00 40.86 1.94
3169 4469 6.436843 AGGAACTGTGTGTAACTGAAAAAG 57.563 37.500 0.00 0.00 37.18 2.27
3170 4470 6.177610 AGGAACTGTGTGTAACTGAAAAAGA 58.822 36.000 0.00 0.00 37.18 2.52
3171 4471 6.093633 AGGAACTGTGTGTAACTGAAAAAGAC 59.906 38.462 0.00 0.00 37.18 3.01
3172 4472 6.128117 GGAACTGTGTGTAACTGAAAAAGACA 60.128 38.462 0.00 0.00 38.04 3.41
3185 4485 2.789409 AAAGACATGGTGGAGTAGCC 57.211 50.000 0.00 0.00 37.10 3.93
3220 4520 6.406177 CGTTAGGCAGAATTAAGGTAGTACCA 60.406 42.308 21.49 0.91 41.95 3.25
3268 4571 6.636705 TGGTTATGATGAACTACCTGTGTAC 58.363 40.000 0.00 0.00 0.00 2.90
3321 4624 1.279496 AGTTCAGTATGGCCAGAGCA 58.721 50.000 13.05 0.00 42.56 4.26
3322 4625 1.065854 AGTTCAGTATGGCCAGAGCAC 60.066 52.381 13.05 6.52 42.56 4.40
3334 4637 3.323403 GGCCAGAGCACATTCTCTAGTAT 59.677 47.826 0.00 0.00 41.22 2.12
3337 4640 5.771469 CCAGAGCACATTCTCTAGTATCTG 58.229 45.833 0.00 0.00 41.22 2.90
3338 4641 5.278907 CCAGAGCACATTCTCTAGTATCTGG 60.279 48.000 3.25 3.25 41.22 3.86
3379 4682 2.689471 TGAATTCGGAATCATTGGGCTG 59.311 45.455 3.28 0.00 0.00 4.85
3403 4706 1.762708 ACAAGTGTGGTTTCCCTGTG 58.237 50.000 0.00 0.00 0.00 3.66
3409 4712 2.293399 GTGTGGTTTCCCTGTGATGAAC 59.707 50.000 0.00 0.00 0.00 3.18
3422 4725 4.065088 TGTGATGAACTGCTTGTACCTTC 58.935 43.478 0.00 0.00 0.00 3.46
3424 4727 2.163818 TGAACTGCTTGTACCTTCCG 57.836 50.000 0.00 0.00 0.00 4.30
3436 4739 5.092554 TGTACCTTCCGATGAAAATGCTA 57.907 39.130 0.00 0.00 0.00 3.49
3440 4743 5.010282 ACCTTCCGATGAAAATGCTAAAGT 58.990 37.500 0.00 0.00 0.00 2.66
3446 4749 7.778083 TCCGATGAAAATGCTAAAGTAGACTA 58.222 34.615 0.00 0.00 0.00 2.59
3507 4810 4.479158 TGGGACTTGGCAGTTAAGAAAAT 58.521 39.130 0.00 0.00 31.22 1.82
3516 4819 4.950475 GGCAGTTAAGAAAATAGCCCTCTT 59.050 41.667 0.00 0.00 34.71 2.85
3517 4820 6.120220 GGCAGTTAAGAAAATAGCCCTCTTA 58.880 40.000 0.00 0.00 34.71 2.10
3530 4833 2.094545 GCCCTCTTACCACTTGCAAATG 60.095 50.000 0.00 0.00 0.00 2.32
3533 4836 4.949856 CCCTCTTACCACTTGCAAATGTAT 59.050 41.667 7.18 0.00 0.00 2.29
3536 4839 7.415206 CCCTCTTACCACTTGCAAATGTATAAC 60.415 40.741 7.18 0.00 0.00 1.89
3542 4845 7.599171 ACCACTTGCAAATGTATAACTAAACC 58.401 34.615 7.18 0.00 0.00 3.27
3546 4849 7.806014 ACTTGCAAATGTATAACTAAACCGTTG 59.194 33.333 0.00 0.00 0.00 4.10
3556 4859 4.546829 ACTAAACCGTTGAGGCTTCATA 57.453 40.909 0.00 0.00 46.52 2.15
3557 4860 5.099042 ACTAAACCGTTGAGGCTTCATAT 57.901 39.130 0.00 0.00 46.52 1.78
3558 4861 6.229936 ACTAAACCGTTGAGGCTTCATATA 57.770 37.500 0.00 0.00 46.52 0.86
3583 4886 8.220898 AGTTAAGAAAAGAAGTAATCCCTCCT 57.779 34.615 0.00 0.00 0.00 3.69
3584 4887 8.322828 AGTTAAGAAAAGAAGTAATCCCTCCTC 58.677 37.037 0.00 0.00 0.00 3.71
3585 4888 6.961361 AAGAAAAGAAGTAATCCCTCCTCT 57.039 37.500 0.00 0.00 0.00 3.69
3586 4889 6.961361 AGAAAAGAAGTAATCCCTCCTCTT 57.039 37.500 0.00 0.00 0.00 2.85
3587 4890 6.716284 AGAAAAGAAGTAATCCCTCCTCTTG 58.284 40.000 0.00 0.00 0.00 3.02
3588 4891 4.495690 AAGAAGTAATCCCTCCTCTTGC 57.504 45.455 0.00 0.00 0.00 4.01
3589 4892 3.730269 AGAAGTAATCCCTCCTCTTGCT 58.270 45.455 0.00 0.00 0.00 3.91
3590 4893 3.454082 AGAAGTAATCCCTCCTCTTGCTG 59.546 47.826 0.00 0.00 0.00 4.41
3591 4894 1.488393 AGTAATCCCTCCTCTTGCTGC 59.512 52.381 0.00 0.00 0.00 5.25
3592 4895 0.839946 TAATCCCTCCTCTTGCTGCC 59.160 55.000 0.00 0.00 0.00 4.85
3593 4896 2.262774 AATCCCTCCTCTTGCTGCCG 62.263 60.000 0.00 0.00 0.00 5.69
3594 4897 3.393970 CCCTCCTCTTGCTGCCGA 61.394 66.667 0.00 0.00 0.00 5.54
3595 4898 2.739996 CCCTCCTCTTGCTGCCGAT 61.740 63.158 0.00 0.00 0.00 4.18
3596 4899 1.222936 CCTCCTCTTGCTGCCGATT 59.777 57.895 0.00 0.00 0.00 3.34
3597 4900 0.393537 CCTCCTCTTGCTGCCGATTT 60.394 55.000 0.00 0.00 0.00 2.17
3598 4901 1.457346 CTCCTCTTGCTGCCGATTTT 58.543 50.000 0.00 0.00 0.00 1.82
3599 4902 1.131883 CTCCTCTTGCTGCCGATTTTG 59.868 52.381 0.00 0.00 0.00 2.44
3600 4903 0.171903 CCTCTTGCTGCCGATTTTGG 59.828 55.000 0.00 0.00 0.00 3.28
3601 4904 0.883833 CTCTTGCTGCCGATTTTGGT 59.116 50.000 0.00 0.00 0.00 3.67
3602 4905 0.597568 TCTTGCTGCCGATTTTGGTG 59.402 50.000 0.00 0.00 0.00 4.17
3603 4906 0.314935 CTTGCTGCCGATTTTGGTGT 59.685 50.000 0.00 0.00 0.00 4.16
3604 4907 0.749649 TTGCTGCCGATTTTGGTGTT 59.250 45.000 0.00 0.00 0.00 3.32
3605 4908 0.749649 TGCTGCCGATTTTGGTGTTT 59.250 45.000 0.00 0.00 0.00 2.83
3606 4909 1.137872 TGCTGCCGATTTTGGTGTTTT 59.862 42.857 0.00 0.00 0.00 2.43
3607 4910 1.526464 GCTGCCGATTTTGGTGTTTTG 59.474 47.619 0.00 0.00 0.00 2.44
3608 4911 2.801342 GCTGCCGATTTTGGTGTTTTGA 60.801 45.455 0.00 0.00 0.00 2.69
3609 4912 2.794350 CTGCCGATTTTGGTGTTTTGAC 59.206 45.455 0.00 0.00 0.00 3.18
3610 4913 2.131972 GCCGATTTTGGTGTTTTGACC 58.868 47.619 0.00 0.00 36.43 4.02
3611 4914 2.749776 CCGATTTTGGTGTTTTGACCC 58.250 47.619 0.00 0.00 34.79 4.46
3612 4915 2.364002 CCGATTTTGGTGTTTTGACCCT 59.636 45.455 0.00 0.00 34.79 4.34
3613 4916 3.181470 CCGATTTTGGTGTTTTGACCCTT 60.181 43.478 0.00 0.00 34.79 3.95
3614 4917 4.438148 CGATTTTGGTGTTTTGACCCTTT 58.562 39.130 0.00 0.00 34.79 3.11
3615 4918 4.873259 CGATTTTGGTGTTTTGACCCTTTT 59.127 37.500 0.00 0.00 34.79 2.27
3616 4919 5.220567 CGATTTTGGTGTTTTGACCCTTTTG 60.221 40.000 0.00 0.00 34.79 2.44
3617 4920 2.682155 TGGTGTTTTGACCCTTTTGC 57.318 45.000 0.00 0.00 34.79 3.68
3618 4921 1.134965 TGGTGTTTTGACCCTTTTGCG 60.135 47.619 0.00 0.00 34.79 4.85
3619 4922 1.135333 GGTGTTTTGACCCTTTTGCGA 59.865 47.619 0.00 0.00 0.00 5.10
3620 4923 2.417515 GGTGTTTTGACCCTTTTGCGAA 60.418 45.455 0.00 0.00 0.00 4.70
3621 4924 3.254892 GTGTTTTGACCCTTTTGCGAAA 58.745 40.909 0.00 0.00 0.00 3.46
3622 4925 3.305897 GTGTTTTGACCCTTTTGCGAAAG 59.694 43.478 18.17 18.17 41.56 2.62
3623 4926 3.056465 TGTTTTGACCCTTTTGCGAAAGT 60.056 39.130 22.22 8.18 40.53 2.66
3624 4927 3.878160 TTTGACCCTTTTGCGAAAGTT 57.122 38.095 22.22 10.83 40.53 2.66
3625 4928 3.878160 TTGACCCTTTTGCGAAAGTTT 57.122 38.095 22.22 10.50 40.53 2.66
3626 4929 3.878160 TGACCCTTTTGCGAAAGTTTT 57.122 38.095 22.22 8.22 40.53 2.43
3627 4930 4.195225 TGACCCTTTTGCGAAAGTTTTT 57.805 36.364 22.22 5.99 40.53 1.94
3650 4953 6.894339 TTGAGATTTGACCCTTTTTCTACC 57.106 37.500 0.00 0.00 0.00 3.18
3651 4954 5.001232 TGAGATTTGACCCTTTTTCTACCG 58.999 41.667 0.00 0.00 0.00 4.02
3652 4955 3.756963 AGATTTGACCCTTTTTCTACCGC 59.243 43.478 0.00 0.00 0.00 5.68
3653 4956 2.943036 TTGACCCTTTTTCTACCGCT 57.057 45.000 0.00 0.00 0.00 5.52
3654 4957 4.354893 TTTGACCCTTTTTCTACCGCTA 57.645 40.909 0.00 0.00 0.00 4.26
3655 4958 3.604875 TGACCCTTTTTCTACCGCTAG 57.395 47.619 0.00 0.00 0.00 3.42
3656 4959 2.235402 TGACCCTTTTTCTACCGCTAGG 59.765 50.000 0.00 0.00 45.13 3.02
3667 4970 3.849951 CGCTAGGTGGATGGCGGT 61.850 66.667 0.00 0.00 45.22 5.68
3668 4971 2.495409 CGCTAGGTGGATGGCGGTA 61.495 63.158 0.00 0.00 45.22 4.02
3669 4972 1.367840 GCTAGGTGGATGGCGGTAG 59.632 63.158 0.00 0.00 0.00 3.18
3670 4973 2.050269 CTAGGTGGATGGCGGTAGG 58.950 63.158 0.00 0.00 0.00 3.18
3671 4974 1.458777 TAGGTGGATGGCGGTAGGG 60.459 63.158 0.00 0.00 0.00 3.53
3672 4975 2.246513 TAGGTGGATGGCGGTAGGGT 62.247 60.000 0.00 0.00 0.00 4.34
3673 4976 1.763256 GGTGGATGGCGGTAGGGTA 60.763 63.158 0.00 0.00 0.00 3.69
3674 4977 1.125711 GGTGGATGGCGGTAGGGTAT 61.126 60.000 0.00 0.00 0.00 2.73
3675 4978 1.636148 GTGGATGGCGGTAGGGTATA 58.364 55.000 0.00 0.00 0.00 1.47
3676 4979 1.972795 GTGGATGGCGGTAGGGTATAA 59.027 52.381 0.00 0.00 0.00 0.98
3677 4980 1.972795 TGGATGGCGGTAGGGTATAAC 59.027 52.381 0.00 0.00 0.00 1.89
3678 4981 1.972795 GGATGGCGGTAGGGTATAACA 59.027 52.381 0.00 0.00 0.00 2.41
3679 4982 2.028385 GGATGGCGGTAGGGTATAACAG 60.028 54.545 0.00 0.00 0.00 3.16
3680 4983 0.754472 TGGCGGTAGGGTATAACAGC 59.246 55.000 0.00 0.00 36.28 4.40
3681 4984 0.034476 GGCGGTAGGGTATAACAGCC 59.966 60.000 1.03 1.03 46.91 4.85
3689 4992 3.396260 GGGTATAACAGCCTATCGCAA 57.604 47.619 0.00 0.00 41.95 4.85
3690 4993 3.735591 GGGTATAACAGCCTATCGCAAA 58.264 45.455 0.00 0.00 41.95 3.68
3691 4994 4.324267 GGGTATAACAGCCTATCGCAAAT 58.676 43.478 0.00 0.00 41.95 2.32
3692 4995 5.484715 GGGTATAACAGCCTATCGCAAATA 58.515 41.667 0.00 0.00 41.95 1.40
3693 4996 5.935789 GGGTATAACAGCCTATCGCAAATAA 59.064 40.000 0.00 0.00 41.95 1.40
3694 4997 6.598064 GGGTATAACAGCCTATCGCAAATAAT 59.402 38.462 0.00 0.00 41.95 1.28
3695 4998 7.120726 GGGTATAACAGCCTATCGCAAATAATT 59.879 37.037 0.00 0.00 41.95 1.40
3696 4999 8.512138 GGTATAACAGCCTATCGCAAATAATTT 58.488 33.333 0.00 0.00 41.38 1.82
3697 5000 9.543018 GTATAACAGCCTATCGCAAATAATTTC 57.457 33.333 0.00 0.00 41.38 2.17
3698 5001 6.699575 AACAGCCTATCGCAAATAATTTCT 57.300 33.333 0.00 0.00 41.38 2.52
3699 5002 7.801716 AACAGCCTATCGCAAATAATTTCTA 57.198 32.000 0.00 0.00 41.38 2.10
3700 5003 7.801716 ACAGCCTATCGCAAATAATTTCTAA 57.198 32.000 0.00 0.00 41.38 2.10
3701 5004 7.865707 ACAGCCTATCGCAAATAATTTCTAAG 58.134 34.615 0.00 0.00 41.38 2.18
3702 5005 7.499232 ACAGCCTATCGCAAATAATTTCTAAGT 59.501 33.333 0.00 0.00 41.38 2.24
3703 5006 8.988934 CAGCCTATCGCAAATAATTTCTAAGTA 58.011 33.333 0.00 0.00 41.38 2.24
3704 5007 9.726438 AGCCTATCGCAAATAATTTCTAAGTAT 57.274 29.630 0.00 0.00 41.38 2.12
3705 5008 9.974750 GCCTATCGCAAATAATTTCTAAGTATC 57.025 33.333 0.00 0.00 37.47 2.24
3718 5021 9.601217 AATTTCTAAGTATCAAATACAGAGCGT 57.399 29.630 0.39 0.00 38.21 5.07
3719 5022 7.987268 TTCTAAGTATCAAATACAGAGCGTG 57.013 36.000 0.39 0.00 38.21 5.34
3720 5023 7.096884 TCTAAGTATCAAATACAGAGCGTGT 57.903 36.000 0.23 0.23 43.86 4.49
3721 5024 8.217131 TCTAAGTATCAAATACAGAGCGTGTA 57.783 34.615 4.66 4.66 45.93 2.90
3722 5025 8.127327 TCTAAGTATCAAATACAGAGCGTGTAC 58.873 37.037 4.32 0.00 44.65 2.90
3723 5026 6.452494 AGTATCAAATACAGAGCGTGTACT 57.548 37.500 4.32 0.00 44.65 2.73
3724 5027 6.496571 AGTATCAAATACAGAGCGTGTACTC 58.503 40.000 4.32 0.00 44.65 2.59
3725 5028 4.776795 TCAAATACAGAGCGTGTACTCA 57.223 40.909 4.32 0.00 44.65 3.41
3726 5029 4.482386 TCAAATACAGAGCGTGTACTCAC 58.518 43.478 4.32 0.00 44.65 3.51
3727 5030 3.505464 AATACAGAGCGTGTACTCACC 57.495 47.619 4.32 0.00 44.65 4.02
3728 5031 2.195741 TACAGAGCGTGTACTCACCT 57.804 50.000 0.00 0.00 40.94 4.00
3729 5032 2.195741 ACAGAGCGTGTACTCACCTA 57.804 50.000 0.00 0.00 41.09 3.08
3730 5033 1.811359 ACAGAGCGTGTACTCACCTAC 59.189 52.381 0.00 0.00 41.09 3.18
3731 5034 1.132643 CAGAGCGTGTACTCACCTACC 59.867 57.143 0.00 0.00 41.09 3.18
3732 5035 0.098376 GAGCGTGTACTCACCTACCG 59.902 60.000 0.00 0.00 41.09 4.02
3733 5036 1.515736 GCGTGTACTCACCTACCGC 60.516 63.158 0.00 0.00 41.09 5.68
3734 5037 1.138247 CGTGTACTCACCTACCGCC 59.862 63.158 0.00 0.00 41.09 6.13
3735 5038 1.138247 GTGTACTCACCTACCGCCG 59.862 63.158 0.00 0.00 38.51 6.46
3736 5039 2.048023 TGTACTCACCTACCGCCGG 61.048 63.158 0.00 0.00 0.00 6.13
3737 5040 2.440796 TACTCACCTACCGCCGGG 60.441 66.667 8.57 0.00 40.11 5.73
3743 5046 4.910585 CCTACCGCCGGGCACATC 62.911 72.222 20.71 0.00 36.48 3.06
3752 5055 4.910585 GGGCACATCGGCGGTAGG 62.911 72.222 7.21 0.00 42.43 3.18
3753 5056 4.910585 GGCACATCGGCGGTAGGG 62.911 72.222 7.21 0.00 33.57 3.53
3754 5057 3.845259 GCACATCGGCGGTAGGGA 61.845 66.667 7.21 0.00 0.00 4.20
3755 5058 3.138625 CACATCGGCGGTAGGGAT 58.861 61.111 7.21 0.00 0.00 3.85
3756 5059 1.812686 GCACATCGGCGGTAGGGATA 61.813 60.000 7.21 0.00 0.00 2.59
3757 5060 0.038526 CACATCGGCGGTAGGGATAC 60.039 60.000 7.21 0.00 0.00 2.24
3758 5061 0.468585 ACATCGGCGGTAGGGATACA 60.469 55.000 7.21 0.00 39.74 2.29
3759 5062 0.038526 CATCGGCGGTAGGGATACAC 60.039 60.000 7.21 0.00 39.74 2.90
3760 5063 0.468585 ATCGGCGGTAGGGATACACA 60.469 55.000 7.21 0.00 39.74 3.72
3761 5064 1.105167 TCGGCGGTAGGGATACACAG 61.105 60.000 7.21 0.00 39.74 3.66
3762 5065 1.069258 GGCGGTAGGGATACACAGC 59.931 63.158 0.00 0.00 35.47 4.40
3763 5066 1.069258 GCGGTAGGGATACACAGCC 59.931 63.158 0.00 0.00 39.74 4.85
3764 5067 1.400530 GCGGTAGGGATACACAGCCT 61.401 60.000 0.00 0.00 39.74 4.58
3765 5068 1.991121 CGGTAGGGATACACAGCCTA 58.009 55.000 0.00 0.00 39.74 3.93
3766 5069 1.612463 CGGTAGGGATACACAGCCTAC 59.388 57.143 0.00 0.00 34.70 3.18
3767 5070 1.969208 GGTAGGGATACACAGCCTACC 59.031 57.143 2.45 2.45 42.18 3.18
3768 5071 1.612463 GTAGGGATACACAGCCTACCG 59.388 57.143 0.00 0.00 39.74 4.02
3769 5072 1.069258 GGGATACACAGCCTACCGC 59.931 63.158 0.00 0.00 39.74 5.68
3770 5073 1.400530 GGGATACACAGCCTACCGCT 61.401 60.000 0.00 0.00 46.18 5.52
3771 5074 2.094642 GGGATACACAGCCTACCGCTA 61.095 57.143 0.00 0.00 43.69 4.26
3772 5075 3.973431 GGGATACACAGCCTACCGCTAG 61.973 59.091 0.00 0.00 43.69 3.42
3780 5083 1.797025 GCCTACCGCTAGCCTATTTG 58.203 55.000 9.66 0.00 0.00 2.32
3781 5084 1.608283 GCCTACCGCTAGCCTATTTGG 60.608 57.143 9.66 5.80 39.35 3.28
3782 5085 1.692519 CCTACCGCTAGCCTATTTGGT 59.307 52.381 9.66 11.85 38.35 3.67
3783 5086 2.548067 CCTACCGCTAGCCTATTTGGTG 60.548 54.545 17.07 8.89 38.35 4.17
3784 5087 0.180406 ACCGCTAGCCTATTTGGTGG 59.820 55.000 9.66 3.44 38.35 4.61
3785 5088 0.180406 CCGCTAGCCTATTTGGTGGT 59.820 55.000 9.66 0.00 38.35 4.16
3786 5089 1.414919 CCGCTAGCCTATTTGGTGGTA 59.585 52.381 9.66 0.00 38.35 3.25
3787 5090 2.548067 CCGCTAGCCTATTTGGTGGTAG 60.548 54.545 9.66 0.00 38.35 3.18
3788 5091 2.548067 CGCTAGCCTATTTGGTGGTAGG 60.548 54.545 9.66 0.00 40.37 3.18
3789 5092 2.224548 GCTAGCCTATTTGGTGGTAGGG 60.225 54.545 2.29 0.00 38.31 3.53
3790 5093 0.551396 AGCCTATTTGGTGGTAGGGC 59.449 55.000 0.00 0.00 38.31 5.19
3791 5094 0.257616 GCCTATTTGGTGGTAGGGCA 59.742 55.000 0.00 0.00 38.31 5.36
3792 5095 1.750682 GCCTATTTGGTGGTAGGGCAG 60.751 57.143 0.00 0.00 38.31 4.85
3793 5096 1.680338 CTATTTGGTGGTAGGGCAGC 58.320 55.000 0.00 0.00 0.00 5.25
3794 5097 0.995803 TATTTGGTGGTAGGGCAGCA 59.004 50.000 0.00 0.00 0.00 4.41
3795 5098 0.114168 ATTTGGTGGTAGGGCAGCAA 59.886 50.000 0.00 0.00 36.14 3.91
3796 5099 0.105964 TTTGGTGGTAGGGCAGCAAA 60.106 50.000 0.00 0.00 43.56 3.68
3797 5100 0.105964 TTGGTGGTAGGGCAGCAAAA 60.106 50.000 0.00 0.00 36.14 2.44
3798 5101 0.825840 TGGTGGTAGGGCAGCAAAAC 60.826 55.000 0.00 0.00 36.14 2.43
3799 5102 1.579429 GTGGTAGGGCAGCAAAACG 59.421 57.895 0.00 0.00 36.14 3.60
3800 5103 2.265182 TGGTAGGGCAGCAAAACGC 61.265 57.895 0.00 0.00 42.91 4.84
3814 5117 5.470845 GCAAAACGCTGACATAGATAAGT 57.529 39.130 0.00 0.00 37.77 2.24
3815 5118 5.869350 GCAAAACGCTGACATAGATAAGTT 58.131 37.500 0.00 0.00 37.77 2.66
3816 5119 5.734498 GCAAAACGCTGACATAGATAAGTTG 59.266 40.000 0.00 0.00 37.77 3.16
3817 5120 5.470845 AAACGCTGACATAGATAAGTTGC 57.529 39.130 0.00 0.00 0.00 4.17
3818 5121 3.458189 ACGCTGACATAGATAAGTTGCC 58.542 45.455 0.00 0.00 0.00 4.52
3819 5122 3.133003 ACGCTGACATAGATAAGTTGCCT 59.867 43.478 0.00 0.00 0.00 4.75
3820 5123 4.341235 ACGCTGACATAGATAAGTTGCCTA 59.659 41.667 0.00 0.00 0.00 3.93
3821 5124 4.681942 CGCTGACATAGATAAGTTGCCTAC 59.318 45.833 0.00 0.00 0.00 3.18
3822 5125 4.991687 GCTGACATAGATAAGTTGCCTACC 59.008 45.833 0.00 0.00 0.00 3.18
3823 5126 5.196341 TGACATAGATAAGTTGCCTACCG 57.804 43.478 0.00 0.00 0.00 4.02
3824 5127 3.988517 GACATAGATAAGTTGCCTACCGC 59.011 47.826 0.00 0.00 38.31 5.68
3825 5128 3.244112 ACATAGATAAGTTGCCTACCGCC 60.244 47.826 0.00 0.00 36.24 6.13
3826 5129 1.200519 AGATAAGTTGCCTACCGCCA 58.799 50.000 0.00 0.00 36.24 5.69
3827 5130 1.557832 AGATAAGTTGCCTACCGCCAA 59.442 47.619 0.00 0.00 36.24 4.52
3828 5131 1.940613 GATAAGTTGCCTACCGCCAAG 59.059 52.381 0.00 0.00 36.24 3.61
3830 5133 2.750237 GTTGCCTACCGCCAAGGG 60.750 66.667 0.00 0.00 46.96 3.95
3831 5134 4.733542 TTGCCTACCGCCAAGGGC 62.734 66.667 0.00 0.00 46.96 5.19
3842 5145 2.438434 CAAGGGCCTTGGCGGTAG 60.438 66.667 34.03 10.61 37.77 3.18
3843 5146 3.728373 AAGGGCCTTGGCGGTAGG 61.728 66.667 20.19 0.00 35.80 3.18
3848 5151 3.717294 CCTTGGCGGTAGGCTGGT 61.717 66.667 0.00 0.00 44.18 4.00
3849 5152 2.363975 CCTTGGCGGTAGGCTGGTA 61.364 63.158 0.00 0.00 44.18 3.25
3850 5153 1.696097 CCTTGGCGGTAGGCTGGTAT 61.696 60.000 0.00 0.00 44.18 2.73
3851 5154 1.045407 CTTGGCGGTAGGCTGGTATA 58.955 55.000 0.00 0.00 44.18 1.47
3852 5155 0.754472 TTGGCGGTAGGCTGGTATAC 59.246 55.000 0.00 0.00 44.18 1.47
3853 5156 1.288127 GGCGGTAGGCTGGTATACG 59.712 63.158 0.00 0.00 42.94 3.06
3854 5157 1.372623 GCGGTAGGCTGGTATACGC 60.373 63.158 0.00 0.22 39.11 4.42
3855 5158 1.803366 GCGGTAGGCTGGTATACGCT 61.803 60.000 0.00 0.00 39.11 5.07
3856 5159 1.527034 CGGTAGGCTGGTATACGCTA 58.473 55.000 0.00 0.00 0.00 4.26
3857 5160 1.881973 CGGTAGGCTGGTATACGCTAA 59.118 52.381 0.00 0.00 0.00 3.09
3858 5161 2.351157 CGGTAGGCTGGTATACGCTAAC 60.351 54.545 0.00 0.00 0.00 2.34
3859 5162 2.624838 GGTAGGCTGGTATACGCTAACA 59.375 50.000 0.00 0.00 0.00 2.41
3860 5163 2.884894 AGGCTGGTATACGCTAACAC 57.115 50.000 0.00 0.00 0.00 3.32
3861 5164 1.411612 AGGCTGGTATACGCTAACACC 59.588 52.381 0.00 0.00 0.00 4.16
3862 5165 1.137479 GGCTGGTATACGCTAACACCA 59.863 52.381 0.00 0.00 38.72 4.17
3863 5166 2.224209 GGCTGGTATACGCTAACACCAT 60.224 50.000 0.00 0.00 40.19 3.55
3864 5167 3.057734 GCTGGTATACGCTAACACCATC 58.942 50.000 0.00 0.00 40.19 3.51
3865 5168 3.305964 CTGGTATACGCTAACACCATCG 58.694 50.000 0.00 0.00 40.19 3.84
3866 5169 2.950975 TGGTATACGCTAACACCATCGA 59.049 45.455 0.00 0.00 36.15 3.59
3867 5170 3.570975 TGGTATACGCTAACACCATCGAT 59.429 43.478 0.00 0.00 36.15 3.59
3868 5171 4.038282 TGGTATACGCTAACACCATCGATT 59.962 41.667 0.00 0.00 36.15 3.34
3869 5172 4.986659 GGTATACGCTAACACCATCGATTT 59.013 41.667 0.00 0.00 0.00 2.17
3870 5173 5.107607 GGTATACGCTAACACCATCGATTTG 60.108 44.000 0.00 0.00 0.00 2.32
3871 5174 2.967362 ACGCTAACACCATCGATTTGA 58.033 42.857 10.18 0.00 0.00 2.69
3872 5175 2.671396 ACGCTAACACCATCGATTTGAC 59.329 45.455 10.18 0.00 0.00 3.18
3873 5176 2.285026 CGCTAACACCATCGATTTGACG 60.285 50.000 10.18 5.33 0.00 4.35
3874 5177 2.030457 GCTAACACCATCGATTTGACGG 59.970 50.000 10.18 4.21 35.56 4.79
3875 5178 0.802494 AACACCATCGATTTGACGGC 59.198 50.000 10.18 0.00 31.40 5.68
3876 5179 0.321210 ACACCATCGATTTGACGGCA 60.321 50.000 10.18 0.00 31.40 5.69
3877 5180 0.374758 CACCATCGATTTGACGGCAG 59.625 55.000 0.00 0.00 31.40 4.85
3878 5181 0.744414 ACCATCGATTTGACGGCAGG 60.744 55.000 0.00 0.00 31.40 4.85
3879 5182 0.461870 CCATCGATTTGACGGCAGGA 60.462 55.000 0.00 0.00 0.00 3.86
3880 5183 1.368641 CATCGATTTGACGGCAGGAA 58.631 50.000 0.00 0.00 0.00 3.36
3881 5184 1.737236 CATCGATTTGACGGCAGGAAA 59.263 47.619 0.00 0.00 0.00 3.13
3882 5185 1.885560 TCGATTTGACGGCAGGAAAA 58.114 45.000 0.00 0.00 0.00 2.29
3883 5186 1.804151 TCGATTTGACGGCAGGAAAAG 59.196 47.619 0.00 0.00 0.00 2.27
3884 5187 1.135689 CGATTTGACGGCAGGAAAAGG 60.136 52.381 0.00 0.00 0.00 3.11
3885 5188 1.202348 GATTTGACGGCAGGAAAAGGG 59.798 52.381 0.00 0.00 0.00 3.95
3886 5189 0.106419 TTTGACGGCAGGAAAAGGGT 60.106 50.000 0.00 0.00 0.00 4.34
3887 5190 0.536460 TTGACGGCAGGAAAAGGGTC 60.536 55.000 0.00 0.00 0.00 4.46
3888 5191 1.072505 GACGGCAGGAAAAGGGTCA 59.927 57.895 0.00 0.00 0.00 4.02
3889 5192 0.955919 GACGGCAGGAAAAGGGTCAG 60.956 60.000 0.00 0.00 0.00 3.51
3890 5193 1.374947 CGGCAGGAAAAGGGTCAGA 59.625 57.895 0.00 0.00 0.00 3.27
3891 5194 0.035056 CGGCAGGAAAAGGGTCAGAT 60.035 55.000 0.00 0.00 0.00 2.90
3892 5195 1.756430 GGCAGGAAAAGGGTCAGATC 58.244 55.000 0.00 0.00 0.00 2.75
3893 5196 1.283321 GGCAGGAAAAGGGTCAGATCT 59.717 52.381 0.00 0.00 0.00 2.75
3894 5197 2.637947 GCAGGAAAAGGGTCAGATCTC 58.362 52.381 0.00 0.00 0.00 2.75
3895 5198 2.898705 CAGGAAAAGGGTCAGATCTCG 58.101 52.381 0.00 0.00 0.00 4.04
3896 5199 2.497675 CAGGAAAAGGGTCAGATCTCGA 59.502 50.000 0.00 0.00 0.00 4.04
3897 5200 3.133721 CAGGAAAAGGGTCAGATCTCGAT 59.866 47.826 0.00 0.00 0.00 3.59
3898 5201 3.777522 AGGAAAAGGGTCAGATCTCGATT 59.222 43.478 0.00 0.00 0.00 3.34
3899 5202 4.226168 AGGAAAAGGGTCAGATCTCGATTT 59.774 41.667 0.00 0.00 0.00 2.17
3900 5203 4.944317 GGAAAAGGGTCAGATCTCGATTTT 59.056 41.667 0.00 0.00 0.00 1.82
3901 5204 5.416013 GGAAAAGGGTCAGATCTCGATTTTT 59.584 40.000 0.00 4.16 0.00 1.94
3920 5223 3.502123 TTTTTCGAACCAGGGTCAGAT 57.498 42.857 5.03 0.00 0.00 2.90
3921 5224 2.762535 TTTCGAACCAGGGTCAGATC 57.237 50.000 5.03 0.00 0.00 2.75
3922 5225 1.938585 TTCGAACCAGGGTCAGATCT 58.061 50.000 5.03 0.00 0.00 2.75
3923 5226 1.475403 TCGAACCAGGGTCAGATCTC 58.525 55.000 5.03 0.00 0.00 2.75
3924 5227 1.186200 CGAACCAGGGTCAGATCTCA 58.814 55.000 5.03 0.00 0.00 3.27
3925 5228 1.134965 CGAACCAGGGTCAGATCTCAC 60.135 57.143 5.03 0.00 0.00 3.51
3926 5229 2.183679 GAACCAGGGTCAGATCTCACT 58.816 52.381 0.00 0.00 0.00 3.41
3927 5230 3.366396 GAACCAGGGTCAGATCTCACTA 58.634 50.000 0.00 0.00 0.00 2.74
3928 5231 3.474798 ACCAGGGTCAGATCTCACTAA 57.525 47.619 0.00 0.00 0.00 2.24
3929 5232 3.791320 ACCAGGGTCAGATCTCACTAAA 58.209 45.455 0.00 0.00 0.00 1.85
3930 5233 4.168101 ACCAGGGTCAGATCTCACTAAAA 58.832 43.478 0.00 0.00 0.00 1.52
3931 5234 4.785376 ACCAGGGTCAGATCTCACTAAAAT 59.215 41.667 0.00 0.00 0.00 1.82
3932 5235 5.251700 ACCAGGGTCAGATCTCACTAAAATT 59.748 40.000 0.00 0.00 0.00 1.82
3933 5236 6.183347 CCAGGGTCAGATCTCACTAAAATTT 58.817 40.000 0.00 0.00 0.00 1.82
3934 5237 6.317391 CCAGGGTCAGATCTCACTAAAATTTC 59.683 42.308 0.00 0.00 0.00 2.17
3935 5238 6.036517 CAGGGTCAGATCTCACTAAAATTTCG 59.963 42.308 0.00 0.00 0.00 3.46
3936 5239 5.220681 GGGTCAGATCTCACTAAAATTTCGC 60.221 44.000 0.00 0.00 0.00 4.70
3937 5240 5.351465 GGTCAGATCTCACTAAAATTTCGCA 59.649 40.000 0.00 0.00 0.00 5.10
3938 5241 6.128282 GGTCAGATCTCACTAAAATTTCGCAA 60.128 38.462 0.00 0.00 0.00 4.85
3939 5242 7.298122 GTCAGATCTCACTAAAATTTCGCAAA 58.702 34.615 0.00 0.00 0.00 3.68
3940 5243 7.803189 GTCAGATCTCACTAAAATTTCGCAAAA 59.197 33.333 0.00 0.00 0.00 2.44
3941 5244 8.017373 TCAGATCTCACTAAAATTTCGCAAAAG 58.983 33.333 0.00 0.00 0.00 2.27
3942 5245 7.272084 CAGATCTCACTAAAATTTCGCAAAAGG 59.728 37.037 0.00 0.00 0.00 3.11
3943 5246 5.768317 TCTCACTAAAATTTCGCAAAAGGG 58.232 37.500 0.00 0.00 0.00 3.95
3944 5247 5.300792 TCTCACTAAAATTTCGCAAAAGGGT 59.699 36.000 0.00 0.00 0.00 4.34
3945 5248 5.525199 TCACTAAAATTTCGCAAAAGGGTC 58.475 37.500 0.00 0.00 0.00 4.46
3946 5249 5.067936 TCACTAAAATTTCGCAAAAGGGTCA 59.932 36.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.901283 TGATCCATGACAAATAATCCACAAT 57.099 32.000 0.00 0.00 0.00 2.71
50 52 4.327357 GGATCATTCGACCAATATAGCACG 59.673 45.833 0.00 0.00 0.00 5.34
109 111 6.322201 GTCTGGACAATCACAATCCCATATTT 59.678 38.462 0.00 0.00 0.00 1.40
128 130 1.131303 ACCCCATTTGTCCGTCTGGA 61.131 55.000 0.00 0.00 43.88 3.86
129 131 0.676782 GACCCCATTTGTCCGTCTGG 60.677 60.000 0.00 0.00 0.00 3.86
131 133 1.189524 TCGACCCCATTTGTCCGTCT 61.190 55.000 0.00 0.00 0.00 4.18
134 136 1.743995 GGTCGACCCCATTTGTCCG 60.744 63.158 24.75 0.00 0.00 4.79
180 182 8.463930 AATTTAATCCATATGTCCACGAACAT 57.536 30.769 1.24 0.00 42.41 2.71
184 186 7.741785 ACCTAATTTAATCCATATGTCCACGA 58.258 34.615 1.24 0.00 0.00 4.35
198 200 6.666113 CCCCAACCACACTTACCTAATTTAAT 59.334 38.462 0.00 0.00 0.00 1.40
209 211 1.004277 GAGCATCCCCAACCACACTTA 59.996 52.381 0.00 0.00 0.00 2.24
219 221 5.397899 CCAAGATAAACTAAGAGCATCCCCA 60.398 44.000 0.00 0.00 33.66 4.96
220 222 5.066593 CCAAGATAAACTAAGAGCATCCCC 58.933 45.833 0.00 0.00 33.66 4.81
221 223 5.066593 CCCAAGATAAACTAAGAGCATCCC 58.933 45.833 0.00 0.00 33.66 3.85
222 224 4.517075 GCCCAAGATAAACTAAGAGCATCC 59.483 45.833 0.00 0.00 33.66 3.51
256 258 9.299465 AGAGAGTGGTACTAATTATAGCTAACC 57.701 37.037 0.00 0.00 33.49 2.85
307 309 8.400947 GCAATATGTTATAGCCATCAATCGATT 58.599 33.333 4.39 4.39 0.00 3.34
308 310 7.012704 GGCAATATGTTATAGCCATCAATCGAT 59.987 37.037 0.00 0.00 44.59 3.59
309 311 6.316140 GGCAATATGTTATAGCCATCAATCGA 59.684 38.462 0.00 0.00 44.59 3.59
310 312 6.489675 GGCAATATGTTATAGCCATCAATCG 58.510 40.000 0.00 0.00 44.59 3.34
318 320 5.389859 TTGCATGGCAATATGTTATAGCC 57.610 39.130 0.00 0.00 43.99 3.93
332 334 2.206750 CATTGGCTATTGTTGCATGGC 58.793 47.619 0.00 0.00 0.00 4.40
333 335 3.530265 ACATTGGCTATTGTTGCATGG 57.470 42.857 0.00 0.00 0.00 3.66
334 336 8.542132 GTTTATTACATTGGCTATTGTTGCATG 58.458 33.333 2.83 0.00 0.00 4.06
335 337 8.256605 TGTTTATTACATTGGCTATTGTTGCAT 58.743 29.630 2.83 0.00 0.00 3.96
336 338 7.606349 TGTTTATTACATTGGCTATTGTTGCA 58.394 30.769 2.83 0.00 0.00 4.08
337 339 8.379902 GTTGTTTATTACATTGGCTATTGTTGC 58.620 33.333 2.83 0.00 36.44 4.17
338 340 9.416794 TGTTGTTTATTACATTGGCTATTGTTG 57.583 29.630 2.83 0.00 36.44 3.33
341 343 9.585099 ACATGTTGTTTATTACATTGGCTATTG 57.415 29.630 0.00 0.00 36.44 1.90
353 355 7.283580 GCCCACCACTATACATGTTGTTTATTA 59.716 37.037 2.30 0.00 0.00 0.98
354 356 6.096282 GCCCACCACTATACATGTTGTTTATT 59.904 38.462 2.30 0.00 0.00 1.40
355 357 5.592688 GCCCACCACTATACATGTTGTTTAT 59.407 40.000 2.30 0.00 0.00 1.40
356 358 4.944930 GCCCACCACTATACATGTTGTTTA 59.055 41.667 2.30 0.00 0.00 2.01
357 359 3.761752 GCCCACCACTATACATGTTGTTT 59.238 43.478 2.30 0.00 0.00 2.83
358 360 3.010138 AGCCCACCACTATACATGTTGTT 59.990 43.478 2.30 0.00 0.00 2.83
359 361 2.576191 AGCCCACCACTATACATGTTGT 59.424 45.455 2.30 0.00 0.00 3.32
360 362 3.281727 AGCCCACCACTATACATGTTG 57.718 47.619 2.30 0.00 0.00 3.33
362 364 6.082031 TCTTATAGCCCACCACTATACATGT 58.918 40.000 2.69 2.69 33.40 3.21
363 365 6.605471 TCTTATAGCCCACCACTATACATG 57.395 41.667 0.00 0.00 33.40 3.21
364 366 7.626999 TTTCTTATAGCCCACCACTATACAT 57.373 36.000 0.00 0.00 33.40 2.29
365 367 7.440505 TTTTCTTATAGCCCACCACTATACA 57.559 36.000 0.00 0.00 33.40 2.29
367 369 9.388672 AGTATTTTCTTATAGCCCACCACTATA 57.611 33.333 0.00 0.00 32.63 1.31
368 370 8.276453 AGTATTTTCTTATAGCCCACCACTAT 57.724 34.615 0.00 0.00 34.71 2.12
370 372 6.576778 AGTATTTTCTTATAGCCCACCACT 57.423 37.500 0.00 0.00 0.00 4.00
373 375 6.236409 GGGTAGTATTTTCTTATAGCCCACC 58.764 44.000 0.00 0.00 32.98 4.61
377 379 6.236409 GTGGGGGTAGTATTTTCTTATAGCC 58.764 44.000 0.00 0.00 34.09 3.93
378 380 6.183361 TGGTGGGGGTAGTATTTTCTTATAGC 60.183 42.308 0.00 0.00 0.00 2.97
379 381 7.222161 GTGGTGGGGGTAGTATTTTCTTATAG 58.778 42.308 0.00 0.00 0.00 1.31
381 383 5.103813 GGTGGTGGGGGTAGTATTTTCTTAT 60.104 44.000 0.00 0.00 0.00 1.73
382 384 4.227982 GGTGGTGGGGGTAGTATTTTCTTA 59.772 45.833 0.00 0.00 0.00 2.10
383 385 3.010920 GGTGGTGGGGGTAGTATTTTCTT 59.989 47.826 0.00 0.00 0.00 2.52
384 386 2.579400 GGTGGTGGGGGTAGTATTTTCT 59.421 50.000 0.00 0.00 0.00 2.52
385 387 2.357465 GGGTGGTGGGGGTAGTATTTTC 60.357 54.545 0.00 0.00 0.00 2.29
386 388 1.642238 GGGTGGTGGGGGTAGTATTTT 59.358 52.381 0.00 0.00 0.00 1.82
388 390 0.625387 GGGGTGGTGGGGGTAGTATT 60.625 60.000 0.00 0.00 0.00 1.89
389 391 1.005156 GGGGTGGTGGGGGTAGTAT 59.995 63.158 0.00 0.00 0.00 2.12
390 392 2.455889 GGGGTGGTGGGGGTAGTA 59.544 66.667 0.00 0.00 0.00 1.82
392 394 4.726254 TCGGGGTGGTGGGGGTAG 62.726 72.222 0.00 0.00 0.00 3.18
608 1710 4.819761 TCCAGCTCGTGCGGATGC 62.820 66.667 11.20 0.00 45.42 3.91
609 1711 2.887568 GTCCAGCTCGTGCGGATG 60.888 66.667 20.17 7.93 45.42 3.51
758 1860 4.393155 ATGTTGCGGAGGAGCGCA 62.393 61.111 11.47 0.00 40.67 6.09
945 2053 2.125269 GGGTGCGTGGCGAGTATT 60.125 61.111 0.00 0.00 0.00 1.89
1025 2133 4.593864 GGAGACGGATCCAGCGCC 62.594 72.222 13.41 10.11 39.34 6.53
1191 2299 4.285790 AGGTGGGGGAAGGAGGCA 62.286 66.667 0.00 0.00 0.00 4.75
1458 2566 1.951209 TGCCAATCCTGACTCTGGTA 58.049 50.000 2.14 0.00 0.00 3.25
1481 2589 2.498167 CGAATATTCTCAGCTTGGGGG 58.502 52.381 13.45 0.00 0.00 5.40
1561 2669 1.067212 CCGAGGCTGGATGTGTAGTAC 59.933 57.143 0.00 0.00 0.00 2.73
1562 2670 1.064240 TCCGAGGCTGGATGTGTAGTA 60.064 52.381 0.00 0.00 31.53 1.82
1563 2671 0.324368 TCCGAGGCTGGATGTGTAGT 60.324 55.000 0.00 0.00 31.53 2.73
1620 2748 3.438434 GGACCAAATTCAGCAAGAGAGAC 59.562 47.826 0.00 0.00 0.00 3.36
1624 2752 4.796038 AATGGACCAAATTCAGCAAGAG 57.204 40.909 0.00 0.00 0.00 2.85
1766 2919 1.675310 CAGCGCCTCAACATTGGGA 60.675 57.895 2.29 0.00 0.00 4.37
1841 2999 7.989416 TCAGCAAATAATAGATCATCATGCA 57.011 32.000 0.00 0.00 33.89 3.96
1842 3000 9.856488 ATTTCAGCAAATAATAGATCATCATGC 57.144 29.630 0.00 0.00 29.81 4.06
1922 3090 1.419374 CCAGAACTTGAGGTCGAACG 58.581 55.000 0.00 0.00 0.00 3.95
1962 3130 2.358003 AGGCGCAAGAGCACACTC 60.358 61.111 10.83 0.00 43.82 3.51
2079 3247 5.531659 AGTGAATCTTGGATTGATCATCTGC 59.468 40.000 0.00 0.00 31.67 4.26
2128 3296 8.532186 TCATTAGGCATATTGTTTATGGTGTT 57.468 30.769 0.78 0.00 0.00 3.32
2167 3344 5.755375 TCCGACAGATAGCAAGATCAAATTC 59.245 40.000 0.00 0.00 0.00 2.17
2193 3370 3.944015 GACTCAATCCTTCTGGACCAATG 59.056 47.826 0.00 0.00 46.51 2.82
2227 3404 0.519077 CAAAGGTTTGCTCCTCGCTC 59.481 55.000 0.00 0.00 40.11 5.03
2239 3416 0.953960 GGGTCATCGTCGCAAAGGTT 60.954 55.000 0.00 0.00 0.00 3.50
2246 3423 1.548973 CGCAATAGGGTCATCGTCGC 61.549 60.000 0.00 0.00 0.00 5.19
2265 3442 4.493545 CGTAGTGTGATGAATTTAACCGGC 60.494 45.833 0.00 0.00 0.00 6.13
2284 3461 3.312973 TGCAAAACAACACTAACCCGTAG 59.687 43.478 0.00 0.00 35.75 3.51
2286 3463 2.093106 TGCAAAACAACACTAACCCGT 58.907 42.857 0.00 0.00 0.00 5.28
2311 3488 4.518217 GTGCGTCATATGTAGAATTGCAC 58.482 43.478 1.90 9.49 42.58 4.57
2313 3490 4.271049 ACAGTGCGTCATATGTAGAATTGC 59.729 41.667 1.90 0.00 0.00 3.56
2338 3520 5.819379 CAGGTAACACATGCTGACAATCTAT 59.181 40.000 0.00 0.00 41.41 1.98
2350 3532 3.129287 GCCCAATCTTCAGGTAACACATG 59.871 47.826 0.00 0.00 41.41 3.21
2359 3544 2.091994 AGAGGAATGCCCAATCTTCAGG 60.092 50.000 0.00 0.00 37.41 3.86
2410 3595 6.018994 GGCACTACTAAATTACTTCACGGATG 60.019 42.308 0.00 0.00 0.00 3.51
2413 3598 5.172934 TGGCACTACTAAATTACTTCACGG 58.827 41.667 0.00 0.00 0.00 4.94
2414 3599 6.903883 ATGGCACTACTAAATTACTTCACG 57.096 37.500 0.00 0.00 0.00 4.35
2435 3620 6.539826 TGCTAAGATGGTCAGATTGTACAATG 59.460 38.462 25.42 13.85 0.00 2.82
2446 3635 2.871182 TACGCTGCTAAGATGGTCAG 57.129 50.000 0.00 0.00 0.00 3.51
2456 3645 2.543848 GCAAGCAACATATACGCTGCTA 59.456 45.455 0.00 0.00 44.18 3.49
2457 3646 1.331756 GCAAGCAACATATACGCTGCT 59.668 47.619 0.00 0.00 46.85 4.24
2458 3647 1.063912 TGCAAGCAACATATACGCTGC 59.936 47.619 0.00 0.00 35.79 5.25
2459 3648 3.403613 TTGCAAGCAACATATACGCTG 57.596 42.857 2.89 0.00 35.79 5.18
2461 3650 4.548726 GCAAATTGCAAGCAACATATACGC 60.549 41.667 13.73 3.03 44.26 4.42
2462 3651 5.057217 GCAAATTGCAAGCAACATATACG 57.943 39.130 13.73 0.00 44.26 3.06
2479 3668 5.597806 CAATCAGGATTACAGCATGCAAAT 58.402 37.500 21.98 15.77 42.53 2.32
2480 3669 4.678574 GCAATCAGGATTACAGCATGCAAA 60.679 41.667 21.98 11.43 42.53 3.68
2487 3676 6.624352 TTTATGAGCAATCAGGATTACAGC 57.376 37.500 0.00 0.00 0.00 4.40
2526 3717 5.664294 AATTCATGCCTAAATGAAGCACA 57.336 34.783 5.89 0.00 46.73 4.57
2527 3718 8.652810 AATAAATTCATGCCTAAATGAAGCAC 57.347 30.769 5.89 0.00 46.73 4.40
2539 3747 8.598075 CAGTTGAAAGCTAAATAAATTCATGCC 58.402 33.333 0.00 0.00 30.81 4.40
2564 3772 5.302059 GCCTAGGATATCTTGTAGTCACACA 59.698 44.000 14.75 0.00 33.30 3.72
2566 3774 4.833380 GGCCTAGGATATCTTGTAGTCACA 59.167 45.833 14.75 0.00 0.00 3.58
2567 3775 4.833380 TGGCCTAGGATATCTTGTAGTCAC 59.167 45.833 14.75 0.00 0.00 3.67
2572 3780 6.763715 ACAATTGGCCTAGGATATCTTGTA 57.236 37.500 14.75 0.00 0.00 2.41
2575 3783 5.373854 AGGAACAATTGGCCTAGGATATCTT 59.626 40.000 14.75 0.00 0.00 2.40
2579 3787 6.584471 TTAAGGAACAATTGGCCTAGGATA 57.416 37.500 14.75 8.08 0.00 2.59
2609 3817 6.248569 TCTAAAGTCTTGAAAGTTGGGACT 57.751 37.500 0.00 0.00 38.66 3.85
2613 3821 6.729187 CAACCTCTAAAGTCTTGAAAGTTGG 58.271 40.000 0.00 0.00 0.00 3.77
2623 3831 5.625150 AGAAACATGCAACCTCTAAAGTCT 58.375 37.500 0.00 0.00 0.00 3.24
2626 3834 5.471456 ACTGAGAAACATGCAACCTCTAAAG 59.529 40.000 0.00 0.00 0.00 1.85
2652 3860 6.366604 TGCATCATAGTTTTGTGCAAAATCAG 59.633 34.615 12.41 5.10 42.22 2.90
2733 3941 9.536510 TGGCTAATTAACCAAGGTTAGTAATTT 57.463 29.630 13.46 7.17 40.98 1.82
2734 3942 9.709387 ATGGCTAATTAACCAAGGTTAGTAATT 57.291 29.630 11.53 12.25 40.98 1.40
2735 3943 9.131791 CATGGCTAATTAACCAAGGTTAGTAAT 57.868 33.333 11.53 2.79 40.98 1.89
2736 3944 8.330247 TCATGGCTAATTAACCAAGGTTAGTAA 58.670 33.333 11.53 0.52 40.98 2.24
2737 3945 7.863722 TCATGGCTAATTAACCAAGGTTAGTA 58.136 34.615 11.53 7.70 40.98 1.82
2751 3959 4.858850 TGATGGTCTGTTCATGGCTAATT 58.141 39.130 0.00 0.00 0.00 1.40
2767 3975 7.759489 ATTGCATAACGGTAAATATGATGGT 57.241 32.000 3.16 0.00 32.43 3.55
2803 4011 1.987770 CAATGTGTGAATTTCGCCAGC 59.012 47.619 7.46 0.00 0.00 4.85
2818 4026 3.525800 AACTTAAGGTCCTGGCAATGT 57.474 42.857 7.53 0.00 0.00 2.71
2836 4044 5.007626 TGAGGCTGTATATCGAAATGCAAAC 59.992 40.000 0.00 0.00 0.00 2.93
2862 4070 9.391006 AGACAACAACATAGTAGAACAGAAAAA 57.609 29.630 0.00 0.00 0.00 1.94
2867 4075 5.928839 AGCAGACAACAACATAGTAGAACAG 59.071 40.000 0.00 0.00 0.00 3.16
2877 4085 2.880890 GGAGTGAAGCAGACAACAACAT 59.119 45.455 0.00 0.00 0.00 2.71
2878 4086 2.092968 AGGAGTGAAGCAGACAACAACA 60.093 45.455 0.00 0.00 0.00 3.33
2879 4087 2.545946 GAGGAGTGAAGCAGACAACAAC 59.454 50.000 0.00 0.00 0.00 3.32
2881 4089 1.070758 GGAGGAGTGAAGCAGACAACA 59.929 52.381 0.00 0.00 0.00 3.33
2882 4090 1.346068 AGGAGGAGTGAAGCAGACAAC 59.654 52.381 0.00 0.00 0.00 3.32
2895 4195 8.017418 ACAAAAGATAGACTGATTAGGAGGAG 57.983 38.462 0.00 0.00 0.00 3.69
2896 4196 7.979786 ACAAAAGATAGACTGATTAGGAGGA 57.020 36.000 0.00 0.00 0.00 3.71
2912 4212 4.454504 ACGAACGAAGGCATAACAAAAGAT 59.545 37.500 0.14 0.00 0.00 2.40
2938 4238 1.683365 GTGGCCGGGTCTACACCTA 60.683 63.158 2.18 0.00 43.22 3.08
2955 4255 1.072159 GTGGCTTCTGCTGGTGAGT 59.928 57.895 0.00 0.00 39.59 3.41
3000 4300 1.540146 CCATGACTCCACGTGTCAACA 60.540 52.381 15.65 9.70 45.82 3.33
3001 4301 1.148310 CCATGACTCCACGTGTCAAC 58.852 55.000 15.65 4.08 45.82 3.18
3012 4312 3.553922 GGCTAGTGCATACTCCATGACTC 60.554 52.174 0.00 0.00 41.91 3.36
3037 4337 3.733443 ACAAGAACCATGGAAAGCAAC 57.267 42.857 21.47 1.36 0.00 4.17
3138 4438 6.422701 CAGTTACACACAGTTCCTTAATTCGA 59.577 38.462 0.00 0.00 0.00 3.71
3152 4452 5.650266 ACCATGTCTTTTTCAGTTACACACA 59.350 36.000 0.00 0.00 0.00 3.72
3166 4466 1.985159 TGGCTACTCCACCATGTCTTT 59.015 47.619 0.00 0.00 40.72 2.52
3167 4467 1.656587 TGGCTACTCCACCATGTCTT 58.343 50.000 0.00 0.00 40.72 3.01
3168 4468 1.279271 GTTGGCTACTCCACCATGTCT 59.721 52.381 0.00 0.00 46.55 3.41
3169 4469 1.739067 GTTGGCTACTCCACCATGTC 58.261 55.000 0.00 0.00 46.55 3.06
3170 4470 0.036388 CGTTGGCTACTCCACCATGT 60.036 55.000 0.00 0.00 46.55 3.21
3171 4471 0.036388 ACGTTGGCTACTCCACCATG 60.036 55.000 0.00 0.00 46.55 3.66
3172 4472 0.690762 AACGTTGGCTACTCCACCAT 59.309 50.000 0.00 0.00 46.55 3.55
3210 4510 8.890410 TTGTTTCTTAGTCTATGGTACTACCT 57.110 34.615 6.79 0.00 39.58 3.08
3240 4540 7.669722 ACACAGGTAGTTCATCATAACCAAAAT 59.330 33.333 0.00 0.00 32.43 1.82
3246 4546 6.875076 AGGTACACAGGTAGTTCATCATAAC 58.125 40.000 0.00 0.00 0.00 1.89
3248 4548 6.629515 GCAAGGTACACAGGTAGTTCATCATA 60.630 42.308 0.00 0.00 0.00 2.15
3254 4554 3.326747 CTGCAAGGTACACAGGTAGTTC 58.673 50.000 0.00 0.00 0.00 3.01
3288 4591 9.902684 GCCATACTGAACTAGTAGTAGGATATA 57.097 37.037 15.71 0.00 44.69 0.86
3302 4605 1.065854 GTGCTCTGGCCATACTGAACT 60.066 52.381 5.51 0.00 37.74 3.01
3313 4616 2.977772 ACTAGAGAATGTGCTCTGGC 57.022 50.000 0.00 0.00 44.54 4.85
3349 4652 5.389859 TGATTCCGAATTCAGCATGTTTT 57.610 34.783 6.22 0.00 37.40 2.43
3350 4653 5.587388 ATGATTCCGAATTCAGCATGTTT 57.413 34.783 6.22 0.00 37.40 2.83
3352 4655 4.202080 CCAATGATTCCGAATTCAGCATGT 60.202 41.667 6.22 0.00 37.40 3.21
3353 4656 4.295870 CCAATGATTCCGAATTCAGCATG 58.704 43.478 6.22 0.00 37.54 4.06
3354 4657 3.319972 CCCAATGATTCCGAATTCAGCAT 59.680 43.478 6.22 0.00 0.00 3.79
3355 4658 2.689471 CCCAATGATTCCGAATTCAGCA 59.311 45.455 6.22 0.00 0.00 4.41
3356 4659 2.544486 GCCCAATGATTCCGAATTCAGC 60.544 50.000 6.22 0.00 0.00 4.26
3357 4660 2.954318 AGCCCAATGATTCCGAATTCAG 59.046 45.455 6.22 0.00 0.00 3.02
3364 4667 1.462616 TTCACAGCCCAATGATTCCG 58.537 50.000 0.00 0.00 0.00 4.30
3398 4701 2.744202 GGTACAAGCAGTTCATCACAGG 59.256 50.000 0.00 0.00 0.00 4.00
3403 4706 2.673368 CGGAAGGTACAAGCAGTTCATC 59.327 50.000 0.00 0.00 0.00 2.92
3409 4712 2.672961 TCATCGGAAGGTACAAGCAG 57.327 50.000 0.00 0.00 0.00 4.24
3422 4725 6.910536 AGTCTACTTTAGCATTTTCATCGG 57.089 37.500 0.00 0.00 0.00 4.18
3424 4727 8.950208 AGGTAGTCTACTTTAGCATTTTCATC 57.050 34.615 9.85 0.00 0.00 2.92
3440 4743 9.710818 ATCCATGTTAGTTTTCTAGGTAGTCTA 57.289 33.333 0.00 0.00 33.61 2.59
3446 4749 6.387220 AGCCTATCCATGTTAGTTTTCTAGGT 59.613 38.462 0.00 0.00 33.61 3.08
3507 4810 1.651737 TGCAAGTGGTAAGAGGGCTA 58.348 50.000 0.00 0.00 0.00 3.93
3516 4819 8.732531 GGTTTAGTTATACATTTGCAAGTGGTA 58.267 33.333 23.78 15.75 0.00 3.25
3517 4820 7.574217 CGGTTTAGTTATACATTTGCAAGTGGT 60.574 37.037 23.78 14.98 0.00 4.16
3530 4833 5.870978 TGAAGCCTCAACGGTTTAGTTATAC 59.129 40.000 1.77 0.00 36.21 1.47
3533 4836 4.339872 TGAAGCCTCAACGGTTTAGTTA 57.660 40.909 1.77 0.00 36.21 2.24
3536 4839 6.281405 ACTATATGAAGCCTCAACGGTTTAG 58.719 40.000 0.00 0.00 36.21 1.85
3542 4845 8.420374 TTTCTTAACTATATGAAGCCTCAACG 57.580 34.615 0.00 0.00 34.49 4.10
3557 4860 9.335211 AGGAGGGATTACTTCTTTTCTTAACTA 57.665 33.333 0.00 0.00 0.00 2.24
3558 4861 8.220898 AGGAGGGATTACTTCTTTTCTTAACT 57.779 34.615 0.00 0.00 0.00 2.24
3571 4874 1.488393 GCAGCAAGAGGAGGGATTACT 59.512 52.381 0.00 0.00 0.00 2.24
3572 4875 1.475930 GGCAGCAAGAGGAGGGATTAC 60.476 57.143 0.00 0.00 0.00 1.89
3573 4876 0.839946 GGCAGCAAGAGGAGGGATTA 59.160 55.000 0.00 0.00 0.00 1.75
3574 4877 1.611965 GGCAGCAAGAGGAGGGATT 59.388 57.895 0.00 0.00 0.00 3.01
3575 4878 2.739996 CGGCAGCAAGAGGAGGGAT 61.740 63.158 0.00 0.00 0.00 3.85
3576 4879 3.393970 CGGCAGCAAGAGGAGGGA 61.394 66.667 0.00 0.00 0.00 4.20
3577 4880 2.262774 AATCGGCAGCAAGAGGAGGG 62.263 60.000 0.00 0.00 0.00 4.30
3578 4881 0.393537 AAATCGGCAGCAAGAGGAGG 60.394 55.000 0.00 0.00 0.00 4.30
3579 4882 1.131883 CAAAATCGGCAGCAAGAGGAG 59.868 52.381 0.00 0.00 0.00 3.69
3580 4883 1.167851 CAAAATCGGCAGCAAGAGGA 58.832 50.000 0.00 0.00 0.00 3.71
3581 4884 0.171903 CCAAAATCGGCAGCAAGAGG 59.828 55.000 0.00 0.00 0.00 3.69
3582 4885 0.883833 ACCAAAATCGGCAGCAAGAG 59.116 50.000 0.00 0.00 0.00 2.85
3583 4886 0.597568 CACCAAAATCGGCAGCAAGA 59.402 50.000 0.00 0.00 0.00 3.02
3584 4887 0.314935 ACACCAAAATCGGCAGCAAG 59.685 50.000 0.00 0.00 0.00 4.01
3585 4888 0.749649 AACACCAAAATCGGCAGCAA 59.250 45.000 0.00 0.00 0.00 3.91
3586 4889 0.749649 AAACACCAAAATCGGCAGCA 59.250 45.000 0.00 0.00 0.00 4.41
3587 4890 1.526464 CAAAACACCAAAATCGGCAGC 59.474 47.619 0.00 0.00 0.00 5.25
3588 4891 2.794350 GTCAAAACACCAAAATCGGCAG 59.206 45.455 0.00 0.00 0.00 4.85
3589 4892 2.482142 GGTCAAAACACCAAAATCGGCA 60.482 45.455 0.00 0.00 36.32 5.69
3590 4893 2.131972 GGTCAAAACACCAAAATCGGC 58.868 47.619 0.00 0.00 36.32 5.54
3591 4894 2.364002 AGGGTCAAAACACCAAAATCGG 59.636 45.455 0.00 0.00 38.32 4.18
3592 4895 3.726291 AGGGTCAAAACACCAAAATCG 57.274 42.857 0.00 0.00 38.32 3.34
3593 4896 5.448496 GCAAAAGGGTCAAAACACCAAAATC 60.448 40.000 0.00 0.00 38.32 2.17
3594 4897 4.397730 GCAAAAGGGTCAAAACACCAAAAT 59.602 37.500 0.00 0.00 38.32 1.82
3595 4898 3.753797 GCAAAAGGGTCAAAACACCAAAA 59.246 39.130 0.00 0.00 38.32 2.44
3596 4899 3.339141 GCAAAAGGGTCAAAACACCAAA 58.661 40.909 0.00 0.00 38.32 3.28
3597 4900 2.675317 CGCAAAAGGGTCAAAACACCAA 60.675 45.455 0.00 0.00 38.32 3.67
3598 4901 1.134965 CGCAAAAGGGTCAAAACACCA 60.135 47.619 0.00 0.00 38.32 4.17
3599 4902 1.135333 TCGCAAAAGGGTCAAAACACC 59.865 47.619 0.00 0.00 35.42 4.16
3600 4903 2.570442 TCGCAAAAGGGTCAAAACAC 57.430 45.000 0.00 0.00 0.00 3.32
3601 4904 3.056465 ACTTTCGCAAAAGGGTCAAAACA 60.056 39.130 1.57 0.00 45.15 2.83
3602 4905 3.517602 ACTTTCGCAAAAGGGTCAAAAC 58.482 40.909 1.57 0.00 45.15 2.43
3603 4906 3.878160 ACTTTCGCAAAAGGGTCAAAA 57.122 38.095 1.57 0.00 45.15 2.44
3604 4907 3.878160 AACTTTCGCAAAAGGGTCAAA 57.122 38.095 1.57 0.00 45.15 2.69
3605 4908 3.878160 AAACTTTCGCAAAAGGGTCAA 57.122 38.095 1.57 0.00 45.15 3.18
3606 4909 3.878160 AAAACTTTCGCAAAAGGGTCA 57.122 38.095 1.57 0.00 45.15 4.02
3624 4927 8.201464 GGTAGAAAAAGGGTCAAATCTCAAAAA 58.799 33.333 0.00 0.00 0.00 1.94
3625 4928 7.469456 CGGTAGAAAAAGGGTCAAATCTCAAAA 60.469 37.037 0.00 0.00 0.00 2.44
3626 4929 6.016610 CGGTAGAAAAAGGGTCAAATCTCAAA 60.017 38.462 0.00 0.00 0.00 2.69
3627 4930 5.472137 CGGTAGAAAAAGGGTCAAATCTCAA 59.528 40.000 0.00 0.00 0.00 3.02
3628 4931 5.001232 CGGTAGAAAAAGGGTCAAATCTCA 58.999 41.667 0.00 0.00 0.00 3.27
3629 4932 4.142665 GCGGTAGAAAAAGGGTCAAATCTC 60.143 45.833 0.00 0.00 0.00 2.75
3630 4933 3.756963 GCGGTAGAAAAAGGGTCAAATCT 59.243 43.478 0.00 0.00 0.00 2.40
3631 4934 3.756963 AGCGGTAGAAAAAGGGTCAAATC 59.243 43.478 0.00 0.00 0.00 2.17
3632 4935 3.763057 AGCGGTAGAAAAAGGGTCAAAT 58.237 40.909 0.00 0.00 0.00 2.32
3633 4936 3.217681 AGCGGTAGAAAAAGGGTCAAA 57.782 42.857 0.00 0.00 0.00 2.69
3634 4937 2.943036 AGCGGTAGAAAAAGGGTCAA 57.057 45.000 0.00 0.00 0.00 3.18
3635 4938 2.235402 CCTAGCGGTAGAAAAAGGGTCA 59.765 50.000 22.81 0.00 0.00 4.02
3636 4939 2.235650 ACCTAGCGGTAGAAAAAGGGTC 59.764 50.000 22.81 0.00 43.29 4.46
3637 4940 2.027469 CACCTAGCGGTAGAAAAAGGGT 60.027 50.000 22.81 8.36 43.24 4.34
3638 4941 2.629051 CACCTAGCGGTAGAAAAAGGG 58.371 52.381 22.81 7.70 43.24 3.95
3639 4942 2.235402 TCCACCTAGCGGTAGAAAAAGG 59.765 50.000 22.81 15.06 43.24 3.11
3640 4943 3.604875 TCCACCTAGCGGTAGAAAAAG 57.395 47.619 22.81 8.14 43.24 2.27
3641 4944 3.370103 CCATCCACCTAGCGGTAGAAAAA 60.370 47.826 22.81 6.26 43.24 1.94
3642 4945 2.169769 CCATCCACCTAGCGGTAGAAAA 59.830 50.000 22.81 5.91 43.24 2.29
3643 4946 1.760613 CCATCCACCTAGCGGTAGAAA 59.239 52.381 22.81 5.57 43.24 2.52
3644 4947 1.410004 CCATCCACCTAGCGGTAGAA 58.590 55.000 22.81 5.92 43.24 2.10
3645 4948 1.113517 GCCATCCACCTAGCGGTAGA 61.114 60.000 22.81 3.43 43.24 2.59
3646 4949 1.367840 GCCATCCACCTAGCGGTAG 59.632 63.158 14.73 14.73 43.24 3.18
3647 4950 2.495409 CGCCATCCACCTAGCGGTA 61.495 63.158 0.00 0.00 43.24 4.02
3651 4954 1.367840 CTACCGCCATCCACCTAGC 59.632 63.158 0.00 0.00 0.00 3.42
3652 4955 1.472662 CCCTACCGCCATCCACCTAG 61.473 65.000 0.00 0.00 0.00 3.02
3653 4956 1.458777 CCCTACCGCCATCCACCTA 60.459 63.158 0.00 0.00 0.00 3.08
3654 4957 2.246513 TACCCTACCGCCATCCACCT 62.247 60.000 0.00 0.00 0.00 4.00
3655 4958 1.125711 ATACCCTACCGCCATCCACC 61.126 60.000 0.00 0.00 0.00 4.61
3656 4959 1.636148 TATACCCTACCGCCATCCAC 58.364 55.000 0.00 0.00 0.00 4.02
3657 4960 1.972795 GTTATACCCTACCGCCATCCA 59.027 52.381 0.00 0.00 0.00 3.41
3658 4961 1.972795 TGTTATACCCTACCGCCATCC 59.027 52.381 0.00 0.00 0.00 3.51
3659 4962 2.612221 GCTGTTATACCCTACCGCCATC 60.612 54.545 0.00 0.00 0.00 3.51
3660 4963 1.346722 GCTGTTATACCCTACCGCCAT 59.653 52.381 0.00 0.00 0.00 4.40
3661 4964 0.754472 GCTGTTATACCCTACCGCCA 59.246 55.000 0.00 0.00 0.00 5.69
3662 4965 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.000 0.00 0.00 37.46 6.13
3663 4966 1.046204 AGGCTGTTATACCCTACCGC 58.954 55.000 0.00 0.00 0.00 5.68
3664 4967 3.128242 CGATAGGCTGTTATACCCTACCG 59.872 52.174 0.00 0.00 32.41 4.02
3665 4968 3.119209 GCGATAGGCTGTTATACCCTACC 60.119 52.174 0.00 0.00 39.11 3.18
3666 4969 3.508793 TGCGATAGGCTGTTATACCCTAC 59.491 47.826 0.00 0.00 44.05 3.18
3667 4970 3.770046 TGCGATAGGCTGTTATACCCTA 58.230 45.455 0.00 0.00 44.05 3.53
3668 4971 2.605257 TGCGATAGGCTGTTATACCCT 58.395 47.619 0.00 0.00 44.05 4.34
3669 4972 3.396260 TTGCGATAGGCTGTTATACCC 57.604 47.619 0.00 0.00 44.05 3.69
3670 4973 7.611213 ATTATTTGCGATAGGCTGTTATACC 57.389 36.000 0.00 0.00 44.05 2.73
3671 4974 9.543018 GAAATTATTTGCGATAGGCTGTTATAC 57.457 33.333 0.00 0.00 44.05 1.47
3672 4975 9.502091 AGAAATTATTTGCGATAGGCTGTTATA 57.498 29.630 0.00 0.00 44.05 0.98
3673 4976 8.396272 AGAAATTATTTGCGATAGGCTGTTAT 57.604 30.769 0.00 0.00 44.05 1.89
3674 4977 7.801716 AGAAATTATTTGCGATAGGCTGTTA 57.198 32.000 0.00 0.00 44.05 2.41
3675 4978 6.699575 AGAAATTATTTGCGATAGGCTGTT 57.300 33.333 0.00 0.00 44.05 3.16
3676 4979 7.499232 ACTTAGAAATTATTTGCGATAGGCTGT 59.501 33.333 0.00 0.00 44.05 4.40
3677 4980 7.865707 ACTTAGAAATTATTTGCGATAGGCTG 58.134 34.615 0.00 0.00 44.05 4.85
3678 4981 9.726438 ATACTTAGAAATTATTTGCGATAGGCT 57.274 29.630 0.00 0.00 44.05 4.58
3679 4982 9.974750 GATACTTAGAAATTATTTGCGATAGGC 57.025 33.333 0.00 0.00 43.96 3.93
3692 4995 9.601217 ACGCTCTGTATTTGATACTTAGAAATT 57.399 29.630 0.00 0.00 36.70 1.82
3693 4996 9.035607 CACGCTCTGTATTTGATACTTAGAAAT 57.964 33.333 0.00 0.00 36.70 2.17
3694 4997 8.033038 ACACGCTCTGTATTTGATACTTAGAAA 58.967 33.333 0.00 0.00 36.70 2.52
3695 4998 7.544622 ACACGCTCTGTATTTGATACTTAGAA 58.455 34.615 0.00 0.00 36.70 2.10
3696 4999 7.096884 ACACGCTCTGTATTTGATACTTAGA 57.903 36.000 0.00 0.00 36.70 2.10
3697 5000 8.129840 AGTACACGCTCTGTATTTGATACTTAG 58.870 37.037 0.00 0.00 37.69 2.18
3698 5001 7.993101 AGTACACGCTCTGTATTTGATACTTA 58.007 34.615 0.00 0.00 37.69 2.24
3699 5002 6.864342 AGTACACGCTCTGTATTTGATACTT 58.136 36.000 0.00 0.00 37.69 2.24
3700 5003 6.095021 TGAGTACACGCTCTGTATTTGATACT 59.905 38.462 0.00 0.00 37.69 2.12
3701 5004 6.196724 GTGAGTACACGCTCTGTATTTGATAC 59.803 42.308 0.00 0.00 37.69 2.24
3702 5005 6.263344 GTGAGTACACGCTCTGTATTTGATA 58.737 40.000 0.00 0.00 37.69 2.15
3703 5006 5.103000 GTGAGTACACGCTCTGTATTTGAT 58.897 41.667 0.00 0.00 37.69 2.57
3704 5007 4.482386 GTGAGTACACGCTCTGTATTTGA 58.518 43.478 0.00 0.00 37.69 2.69
3705 5008 3.612860 GGTGAGTACACGCTCTGTATTTG 59.387 47.826 3.86 0.00 46.77 2.32
3706 5009 3.510360 AGGTGAGTACACGCTCTGTATTT 59.490 43.478 3.86 0.00 46.77 1.40
3707 5010 3.090037 AGGTGAGTACACGCTCTGTATT 58.910 45.455 3.86 0.00 46.77 1.89
3708 5011 2.724454 AGGTGAGTACACGCTCTGTAT 58.276 47.619 3.86 0.00 46.77 2.29
3709 5012 2.195741 AGGTGAGTACACGCTCTGTA 57.804 50.000 3.86 0.00 46.77 2.74
3710 5013 1.811359 GTAGGTGAGTACACGCTCTGT 59.189 52.381 3.86 0.00 46.77 3.41
3711 5014 1.132643 GGTAGGTGAGTACACGCTCTG 59.867 57.143 3.86 0.00 46.77 3.35
3712 5015 1.461559 GGTAGGTGAGTACACGCTCT 58.538 55.000 3.86 2.72 46.77 4.09
3713 5016 0.098376 CGGTAGGTGAGTACACGCTC 59.902 60.000 3.86 0.00 46.77 5.03
3714 5017 1.930908 GCGGTAGGTGAGTACACGCT 61.931 60.000 3.86 0.00 46.77 5.07
3715 5018 1.515736 GCGGTAGGTGAGTACACGC 60.516 63.158 0.00 0.00 46.77 5.34
3716 5019 1.138247 GGCGGTAGGTGAGTACACG 59.862 63.158 0.00 0.00 46.77 4.49
3717 5020 1.138247 CGGCGGTAGGTGAGTACAC 59.862 63.158 0.00 0.00 45.27 2.90
3718 5021 2.048023 CCGGCGGTAGGTGAGTACA 61.048 63.158 19.97 0.00 0.00 2.90
3719 5022 2.779033 CCCGGCGGTAGGTGAGTAC 61.779 68.421 26.32 0.00 0.00 2.73
3720 5023 2.440796 CCCGGCGGTAGGTGAGTA 60.441 66.667 26.32 0.00 0.00 2.59
3726 5029 4.910585 GATGTGCCCGGCGGTAGG 62.911 72.222 26.32 11.02 0.00 3.18
3735 5038 4.910585 CCTACCGCCGATGTGCCC 62.911 72.222 0.00 0.00 0.00 5.36
3736 5039 4.910585 CCCTACCGCCGATGTGCC 62.911 72.222 0.00 0.00 0.00 5.01
3737 5040 1.812686 TATCCCTACCGCCGATGTGC 61.813 60.000 0.00 0.00 0.00 4.57
3738 5041 0.038526 GTATCCCTACCGCCGATGTG 60.039 60.000 0.00 0.00 0.00 3.21
3739 5042 0.468585 TGTATCCCTACCGCCGATGT 60.469 55.000 0.00 0.00 0.00 3.06
3740 5043 0.038526 GTGTATCCCTACCGCCGATG 60.039 60.000 0.00 0.00 0.00 3.84
3741 5044 0.468585 TGTGTATCCCTACCGCCGAT 60.469 55.000 0.00 0.00 0.00 4.18
3742 5045 1.076850 TGTGTATCCCTACCGCCGA 60.077 57.895 0.00 0.00 0.00 5.54
3743 5046 1.362717 CTGTGTATCCCTACCGCCG 59.637 63.158 0.00 0.00 0.00 6.46
3744 5047 1.069258 GCTGTGTATCCCTACCGCC 59.931 63.158 0.00 0.00 0.00 6.13
3745 5048 1.069258 GGCTGTGTATCCCTACCGC 59.931 63.158 0.00 0.00 0.00 5.68
3746 5049 1.612463 GTAGGCTGTGTATCCCTACCG 59.388 57.143 0.00 0.00 43.31 4.02
3748 5051 1.612463 CGGTAGGCTGTGTATCCCTAC 59.388 57.143 0.00 7.39 46.60 3.18
3749 5052 1.991121 CGGTAGGCTGTGTATCCCTA 58.009 55.000 0.00 0.00 0.00 3.53
3750 5053 1.400530 GCGGTAGGCTGTGTATCCCT 61.401 60.000 0.00 0.00 39.11 4.20
3751 5054 1.069258 GCGGTAGGCTGTGTATCCC 59.931 63.158 0.00 0.00 39.11 3.85
3752 5055 4.752514 GCGGTAGGCTGTGTATCC 57.247 61.111 0.00 0.00 39.11 2.59
3762 5065 1.692519 ACCAAATAGGCTAGCGGTAGG 59.307 52.381 22.24 8.20 43.14 3.18
3763 5066 2.548067 CCACCAAATAGGCTAGCGGTAG 60.548 54.545 17.24 17.24 43.14 3.18
3764 5067 1.414919 CCACCAAATAGGCTAGCGGTA 59.585 52.381 9.00 3.10 43.14 4.02
3765 5068 0.180406 CCACCAAATAGGCTAGCGGT 59.820 55.000 9.00 6.26 43.14 5.68
3766 5069 0.180406 ACCACCAAATAGGCTAGCGG 59.820 55.000 9.00 5.55 43.14 5.52
3767 5070 2.548067 CCTACCACCAAATAGGCTAGCG 60.548 54.545 9.00 0.00 43.14 4.26
3768 5071 2.224548 CCCTACCACCAAATAGGCTAGC 60.225 54.545 6.04 6.04 43.14 3.42
3769 5072 2.224548 GCCCTACCACCAAATAGGCTAG 60.225 54.545 0.00 0.00 43.14 3.42
3770 5073 1.772453 GCCCTACCACCAAATAGGCTA 59.228 52.381 0.00 0.00 43.14 3.93
3771 5074 0.551396 GCCCTACCACCAAATAGGCT 59.449 55.000 0.00 0.00 43.14 4.58
3772 5075 0.257616 TGCCCTACCACCAAATAGGC 59.742 55.000 0.00 0.00 43.14 3.93
3773 5076 1.750682 GCTGCCCTACCACCAAATAGG 60.751 57.143 0.00 0.00 45.67 2.57
3774 5077 1.064758 TGCTGCCCTACCACCAAATAG 60.065 52.381 0.00 0.00 0.00 1.73
3775 5078 0.995803 TGCTGCCCTACCACCAAATA 59.004 50.000 0.00 0.00 0.00 1.40
3776 5079 0.114168 TTGCTGCCCTACCACCAAAT 59.886 50.000 0.00 0.00 0.00 2.32
3777 5080 0.105964 TTTGCTGCCCTACCACCAAA 60.106 50.000 0.00 0.00 0.00 3.28
3778 5081 0.105964 TTTTGCTGCCCTACCACCAA 60.106 50.000 0.00 0.00 0.00 3.67
3779 5082 0.825840 GTTTTGCTGCCCTACCACCA 60.826 55.000 0.00 0.00 0.00 4.17
3780 5083 1.862602 CGTTTTGCTGCCCTACCACC 61.863 60.000 0.00 0.00 0.00 4.61
3781 5084 1.579429 CGTTTTGCTGCCCTACCAC 59.421 57.895 0.00 0.00 0.00 4.16
3782 5085 2.265182 GCGTTTTGCTGCCCTACCA 61.265 57.895 0.00 0.00 41.73 3.25
3783 5086 2.566529 GCGTTTTGCTGCCCTACC 59.433 61.111 0.00 0.00 41.73 3.18
3792 5095 5.470845 ACTTATCTATGTCAGCGTTTTGC 57.529 39.130 0.00 0.00 46.98 3.68
3793 5096 5.734498 GCAACTTATCTATGTCAGCGTTTTG 59.266 40.000 0.00 0.00 0.00 2.44
3794 5097 5.163754 GGCAACTTATCTATGTCAGCGTTTT 60.164 40.000 0.00 0.00 0.00 2.43
3795 5098 4.332819 GGCAACTTATCTATGTCAGCGTTT 59.667 41.667 0.00 0.00 0.00 3.60
3796 5099 3.871594 GGCAACTTATCTATGTCAGCGTT 59.128 43.478 0.00 0.00 0.00 4.84
3797 5100 3.458189 GGCAACTTATCTATGTCAGCGT 58.542 45.455 0.00 0.00 0.00 5.07
3825 5128 2.438434 CTACCGCCAAGGCCCTTG 60.438 66.667 16.91 16.91 46.52 3.61
3826 5129 3.728373 CCTACCGCCAAGGCCCTT 61.728 66.667 5.34 0.00 46.52 3.95
3832 5135 1.045407 TATACCAGCCTACCGCCAAG 58.955 55.000 0.00 0.00 38.78 3.61
3833 5136 0.754472 GTATACCAGCCTACCGCCAA 59.246 55.000 0.00 0.00 38.78 4.52
3834 5137 1.457823 CGTATACCAGCCTACCGCCA 61.458 60.000 0.00 0.00 38.78 5.69
3835 5138 1.288127 CGTATACCAGCCTACCGCC 59.712 63.158 0.00 0.00 38.78 6.13
3836 5139 1.372623 GCGTATACCAGCCTACCGC 60.373 63.158 0.00 0.00 37.98 5.68
3837 5140 1.527034 TAGCGTATACCAGCCTACCG 58.473 55.000 0.00 0.00 0.00 4.02
3838 5141 2.624838 TGTTAGCGTATACCAGCCTACC 59.375 50.000 0.00 0.00 0.00 3.18
3839 5142 3.551659 GGTGTTAGCGTATACCAGCCTAC 60.552 52.174 0.00 0.00 33.42 3.18
3840 5143 2.624838 GGTGTTAGCGTATACCAGCCTA 59.375 50.000 0.00 0.00 33.42 3.93
3841 5144 1.411612 GGTGTTAGCGTATACCAGCCT 59.588 52.381 0.00 0.00 33.42 4.58
3842 5145 1.137479 TGGTGTTAGCGTATACCAGCC 59.863 52.381 5.79 0.00 38.23 4.85
3843 5146 2.589798 TGGTGTTAGCGTATACCAGC 57.410 50.000 5.79 0.00 38.23 4.85
3844 5147 3.004002 TCGATGGTGTTAGCGTATACCAG 59.996 47.826 13.37 3.91 45.49 4.00
3845 5148 2.950975 TCGATGGTGTTAGCGTATACCA 59.049 45.455 11.04 11.04 46.25 3.25
3846 5149 3.631145 TCGATGGTGTTAGCGTATACC 57.369 47.619 0.00 1.04 0.00 2.73
3847 5150 5.688621 TCAAATCGATGGTGTTAGCGTATAC 59.311 40.000 0.00 0.00 0.00 1.47
3848 5151 5.688621 GTCAAATCGATGGTGTTAGCGTATA 59.311 40.000 0.00 0.00 0.00 1.47
3849 5152 4.506654 GTCAAATCGATGGTGTTAGCGTAT 59.493 41.667 0.00 0.00 0.00 3.06
3850 5153 3.861113 GTCAAATCGATGGTGTTAGCGTA 59.139 43.478 0.00 0.00 0.00 4.42
3851 5154 2.671396 GTCAAATCGATGGTGTTAGCGT 59.329 45.455 0.00 0.00 0.00 5.07
3852 5155 2.285026 CGTCAAATCGATGGTGTTAGCG 60.285 50.000 0.00 2.22 0.00 4.26
3853 5156 2.030457 CCGTCAAATCGATGGTGTTAGC 59.970 50.000 0.00 0.00 44.76 3.09
3854 5157 3.925688 CCGTCAAATCGATGGTGTTAG 57.074 47.619 0.00 0.00 44.76 2.34
3861 5164 1.368641 TTCCTGCCGTCAAATCGATG 58.631 50.000 0.00 0.00 0.00 3.84
3862 5165 2.107950 TTTCCTGCCGTCAAATCGAT 57.892 45.000 0.00 0.00 0.00 3.59
3863 5166 1.804151 CTTTTCCTGCCGTCAAATCGA 59.196 47.619 0.00 0.00 0.00 3.59
3864 5167 1.135689 CCTTTTCCTGCCGTCAAATCG 60.136 52.381 0.00 0.00 0.00 3.34
3865 5168 1.202348 CCCTTTTCCTGCCGTCAAATC 59.798 52.381 0.00 0.00 0.00 2.17
3866 5169 1.256812 CCCTTTTCCTGCCGTCAAAT 58.743 50.000 0.00 0.00 0.00 2.32
3867 5170 0.106419 ACCCTTTTCCTGCCGTCAAA 60.106 50.000 0.00 0.00 0.00 2.69
3868 5171 0.536460 GACCCTTTTCCTGCCGTCAA 60.536 55.000 0.00 0.00 0.00 3.18
3869 5172 1.072505 GACCCTTTTCCTGCCGTCA 59.927 57.895 0.00 0.00 0.00 4.35
3870 5173 0.955919 CTGACCCTTTTCCTGCCGTC 60.956 60.000 0.00 0.00 0.00 4.79
3871 5174 1.073199 CTGACCCTTTTCCTGCCGT 59.927 57.895 0.00 0.00 0.00 5.68
3872 5175 0.035056 ATCTGACCCTTTTCCTGCCG 60.035 55.000 0.00 0.00 0.00 5.69
3873 5176 1.283321 AGATCTGACCCTTTTCCTGCC 59.717 52.381 0.00 0.00 0.00 4.85
3874 5177 2.637947 GAGATCTGACCCTTTTCCTGC 58.362 52.381 0.00 0.00 0.00 4.85
3875 5178 2.497675 TCGAGATCTGACCCTTTTCCTG 59.502 50.000 0.00 0.00 0.00 3.86
3876 5179 2.821437 TCGAGATCTGACCCTTTTCCT 58.179 47.619 0.00 0.00 0.00 3.36
3877 5180 3.828875 ATCGAGATCTGACCCTTTTCC 57.171 47.619 0.00 0.00 0.00 3.13
3878 5181 6.502136 AAAAATCGAGATCTGACCCTTTTC 57.498 37.500 0.00 0.00 0.00 2.29
3900 5203 3.072476 AGATCTGACCCTGGTTCGAAAAA 59.928 43.478 0.00 0.00 0.00 1.94
3901 5204 2.637872 AGATCTGACCCTGGTTCGAAAA 59.362 45.455 0.00 0.00 0.00 2.29
3902 5205 2.233922 GAGATCTGACCCTGGTTCGAAA 59.766 50.000 0.00 0.00 0.00 3.46
3903 5206 1.825474 GAGATCTGACCCTGGTTCGAA 59.175 52.381 0.00 0.00 0.00 3.71
3904 5207 1.272480 TGAGATCTGACCCTGGTTCGA 60.272 52.381 0.00 0.00 0.00 3.71
3905 5208 1.134965 GTGAGATCTGACCCTGGTTCG 60.135 57.143 0.00 0.00 0.00 3.95
3906 5209 2.183679 AGTGAGATCTGACCCTGGTTC 58.816 52.381 8.86 0.00 0.00 3.62
3907 5210 2.334006 AGTGAGATCTGACCCTGGTT 57.666 50.000 8.86 0.00 0.00 3.67
3908 5211 3.474798 TTAGTGAGATCTGACCCTGGT 57.525 47.619 8.86 0.00 0.00 4.00
3909 5212 4.826274 TTTTAGTGAGATCTGACCCTGG 57.174 45.455 8.86 0.00 0.00 4.45
3910 5213 6.036517 CGAAATTTTAGTGAGATCTGACCCTG 59.963 42.308 8.86 0.00 0.00 4.45
3911 5214 6.109359 CGAAATTTTAGTGAGATCTGACCCT 58.891 40.000 8.86 0.00 0.00 4.34
3912 5215 5.220681 GCGAAATTTTAGTGAGATCTGACCC 60.221 44.000 8.86 0.00 0.00 4.46
3913 5216 5.351465 TGCGAAATTTTAGTGAGATCTGACC 59.649 40.000 8.86 0.00 0.00 4.02
3914 5217 6.408858 TGCGAAATTTTAGTGAGATCTGAC 57.591 37.500 3.85 3.85 0.00 3.51
3915 5218 7.433708 TTTGCGAAATTTTAGTGAGATCTGA 57.566 32.000 0.00 0.00 0.00 3.27
3916 5219 7.272084 CCTTTTGCGAAATTTTAGTGAGATCTG 59.728 37.037 0.00 0.00 0.00 2.90
3917 5220 7.308435 CCTTTTGCGAAATTTTAGTGAGATCT 58.692 34.615 0.00 0.00 0.00 2.75
3918 5221 6.528072 CCCTTTTGCGAAATTTTAGTGAGATC 59.472 38.462 0.00 0.00 0.00 2.75
3919 5222 6.015434 ACCCTTTTGCGAAATTTTAGTGAGAT 60.015 34.615 0.00 0.00 0.00 2.75
3920 5223 5.300792 ACCCTTTTGCGAAATTTTAGTGAGA 59.699 36.000 0.00 0.00 0.00 3.27
3921 5224 5.528870 ACCCTTTTGCGAAATTTTAGTGAG 58.471 37.500 0.00 0.00 0.00 3.51
3922 5225 5.067936 TGACCCTTTTGCGAAATTTTAGTGA 59.932 36.000 0.00 0.00 0.00 3.41
3923 5226 5.285651 TGACCCTTTTGCGAAATTTTAGTG 58.714 37.500 0.00 0.00 0.00 2.74
3924 5227 5.523438 TGACCCTTTTGCGAAATTTTAGT 57.477 34.783 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.