AutoCloner

Multiple sequence alignment - TraesCS5B01G064400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G064400	chr5B	100.000	4115	0	0	1	4115	72096488	72100602	0.000000e+00	7600.0
1	TraesCS5B01G064400	chr5B	86.231	995	125	7	1926	2917	63544076	63545061	0.000000e+00	1068.0
2	TraesCS5B01G064400	chr5B	84.970	998	138	7	1926	2920	62028347	62027359	0.000000e+00	1002.0
3	TraesCS5B01G064400	chr5B	96.154	52	2	0	641	692	34556524	34556473	7.330000e-13	86.1
4	TraesCS5B01G064400	chr5D	92.529	3306	162	30	768	4024	59045433	59042164	0.000000e+00	4658.0
5	TraesCS5B01G064400	chr5D	84.354	147	19	4	536	681	42975941	42976084	1.540000e-29	141.0
6	TraesCS5B01G064400	chr5D	98.182	55	1	0	4061	4115	59042166	59042112	3.390000e-16	97.1
7	TraesCS5B01G064400	chr5A	94.115	2549	101	20	692	3207	47541811	47539279	0.000000e+00	3831.0
8	TraesCS5B01G064400	chr5A	90.866	1062	87	5	1930	2987	47461009	47459954	0.000000e+00	1415.0
9	TraesCS5B01G064400	chr5A	86.131	995	126	6	1926	2917	46709906	46710891	0.000000e+00	1062.0
10	TraesCS5B01G064400	chr5A	86.689	586	55	15	3329	3903	47459652	47459079	2.700000e-176	628.0
11	TraesCS5B01G064400	chr5A	82.902	696	103	11	1102	1786	47461962	47461272	2.720000e-171	612.0
12	TraesCS5B01G064400	chr5A	78.514	498	90	14	2413	2904	47774494	47774980	1.110000e-80	311.0
13	TraesCS5B01G064400	chr5A	90.909	209	18	1	3679	3886	47537637	47537429	3.130000e-71	279.0
14	TraesCS5B01G064400	chr5A	92.638	163	8	2	3953	4115	47458221	47458063	8.900000e-57	231.0
15	TraesCS5B01G064400	chr5A	90.833	120	11	0	3567	3686	47538237	47538118	1.180000e-35	161.0
16	TraesCS5B01G064400	chr5A	86.000	150	18	3	3280	3428	47538808	47538661	1.530000e-34	158.0
17	TraesCS5B01G064400	chr2B	91.437	654	34	11	52	689	663918090	663917443	0.000000e+00	878.0
18	TraesCS5B01G064400	chr2B	96.000	50	2	0	641	690	606777909	606777860	9.480000e-12	82.4
19	TraesCS5B01G064400	chr1B	90.829	567	31	7	52	602	638193953	638194514	0.000000e+00	739.0
20	TraesCS5B01G064400	chr1B	90.829	567	31	8	52	602	638351668	638352229	0.000000e+00	739.0
21	TraesCS5B01G064400	chr1B	91.361	463	24	6	52	499	638276347	638276808	1.620000e-173	619.0
22	TraesCS5B01G064400	chr1B	90.201	398	22	7	52	434	508567691	508567296	1.710000e-138	503.0
23	TraesCS5B01G064400	chr1B	83.871	279	14	8	437	689	508567248	508566975	1.910000e-58	237.0
24	TraesCS5B01G064400	chr1B	95.455	66	2	1	619	683	638353404	638353469	2.020000e-18	104.0
25	TraesCS5B01G064400	chrUn	90.653	567	32	7	52	602	7948798	7949359	0.000000e+00	734.0
26	TraesCS5B01G064400	chrUn	93.651	315	18	2	52	365	7951750	7952063	1.730000e-128	470.0
27	TraesCS5B01G064400	chrUn	93.642	173	7	3	352	521	469310244	469310073	5.280000e-64	255.0
28	TraesCS5B01G064400	chr2A	83.235	680	60	29	50	692	727714851	727714189	3.570000e-160	575.0
29	TraesCS5B01G064400	chr3A	88.747	471	30	10	52	506	374762693	374763156	4.650000e-154	555.0
30	TraesCS5B01G064400	chr7A	90.047	422	26	4	50	456	62474695	62475115	2.180000e-147	532.0
31	TraesCS5B01G064400	chr7A	89.736	341	16	6	352	688	250610862	250611187	6.360000e-113	418.0
32	TraesCS5B01G064400	chr7D	81.032	601	102	8	2340	2930	45432946	45432348	6.230000e-128	468.0
33	TraesCS5B01G064400	chr7D	90.057	352	25	5	50	396	399617844	399617498	8.110000e-122	448.0
34	TraesCS5B01G064400	chr7D	100.000	43	0	0	641	683	28029333	28029375	3.410000e-11	80.5
35	TraesCS5B01G064400	chr4D	79.153	590	110	11	2340	2924	485538798	485539379	2.980000e-106	396.0
36	TraesCS5B01G064400	chr4D	82.512	406	65	3	1930	2335	485538195	485538594	6.540000e-93	351.0
37	TraesCS5B01G064400	chr7B	78.403	551	101	15	2340	2884	40655439	40655977	3.940000e-90	342.0
38	TraesCS5B01G064400	chr3D	77.370	654	92	41	50	681	416991438	416990819	1.830000e-88	337.0
39	TraesCS5B01G064400	chr3D	81.818	341	58	4	1955	2293	550382931	550382593	2.420000e-72	283.0
40	TraesCS5B01G064400	chr4B	82.632	380	63	2	1958	2337	619364815	619364439	2.370000e-87	333.0
41	TraesCS5B01G064400	chr2D	94.643	56	3	0	1590	1645	9628618	9628563	2.040000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G064400	chr5B	72096488	72100602	4114	False	7600.00	7600	100.00000	1	4115	1	chr5B.!!$F2	4114
1	TraesCS5B01G064400	chr5B	63544076	63545061	985	False	1068.00	1068	86.23100	1926	2917	1	chr5B.!!$F1	991
2	TraesCS5B01G064400	chr5B	62027359	62028347	988	True	1002.00	1002	84.97000	1926	2920	1	chr5B.!!$R2	994
3	TraesCS5B01G064400	chr5D	59042112	59045433	3321	True	2377.55	4658	95.35550	768	4115	2	chr5D.!!$R1	3347
4	TraesCS5B01G064400	chr5A	47537429	47541811	4382	True	1107.25	3831	90.46425	692	3886	4	chr5A.!!$R2	3194
5	TraesCS5B01G064400	chr5A	46709906	46710891	985	False	1062.00	1062	86.13100	1926	2917	1	chr5A.!!$F1	991
6	TraesCS5B01G064400	chr5A	47458063	47461962	3899	True	721.50	1415	88.27375	1102	4115	4	chr5A.!!$R1	3013
7	TraesCS5B01G064400	chr2B	663917443	663918090	647	True	878.00	878	91.43700	52	689	1	chr2B.!!$R2	637
8	TraesCS5B01G064400	chr1B	638193953	638194514	561	False	739.00	739	90.82900	52	602	1	chr1B.!!$F1	550
9	TraesCS5B01G064400	chr1B	638351668	638353469	1801	False	421.50	739	93.14200	52	683	2	chr1B.!!$F3	631
10	TraesCS5B01G064400	chr1B	508566975	508567691	716	True	370.00	503	87.03600	52	689	2	chr1B.!!$R1	637
11	TraesCS5B01G064400	chrUn	7948798	7952063	3265	False	602.00	734	92.15200	52	602	2	chrUn.!!$F1	550
12	TraesCS5B01G064400	chr2A	727714189	727714851	662	True	575.00	575	83.23500	50	692	1	chr2A.!!$R1	642
13	TraesCS5B01G064400	chr7D	45432348	45432946	598	True	468.00	468	81.03200	2340	2930	1	chr7D.!!$R1	590
14	TraesCS5B01G064400	chr4D	485538195	485539379	1184	False	373.50	396	80.83250	1930	2924	2	chr4D.!!$F1	994
15	TraesCS5B01G064400	chr7B	40655439	40655977	538	False	342.00	342	78.40300	2340	2884	1	chr7B.!!$F1	544
16	TraesCS5B01G064400	chr3D	416990819	416991438	619	True	337.00	337	77.37000	50	681	1	chr3D.!!$R1	631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
559	673	0.253044	ACACATGCCGGCTGTATTCT	59.747	50.0	29.7	9.34	0.00	2.40	F
795	2080	0.392998	GGATTGGTCGGTGCATCACT	60.393	55.0	0.0	0.00	34.40	3.41	F
1503	2817	0.799917	CGTGGCTCACTCTCATGACG	60.800	60.0	0.0	0.00	31.34	4.35	F
2694	5860	0.392706	ACACGATGCACCTGACTCAA	59.607	50.0	0.0	0.00	0.00	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1836	3306	0.602638	CCAACAGCGCTACAGAACCA	60.603	55.0	10.99	0.00	3.67	R
2694	5860	0.976073	CGTACCAGTCCCAGACCCAT	60.976	60.0	0.00	32.18	4.00	R
2936	6102	0.749454	GGCAGCCCAAGATGTAGTGG	60.749	60.0	0.00	34.44	4.00	R
3562	7342	0.676184	ACGATGGATCATGGACCGAG	59.324	55.0	0.00	0.00	4.63	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
78	79	2.434702	AGAAGCCTACAACCTTATCCCG	59.565	50.000	0.00	0.00	0.00	5.14
367	411	6.352137	GGATCAAGGAAAATGCCAAATAACCT	60.352	38.462	0.00	0.00	0.00	3.50
462	575	3.390967	TGAAAGAGACACACTGGAATGGA	59.609	43.478	0.00	0.00	0.00	3.41
485	598	0.610232	GTGTGGAAGATGCCAAGCCT	60.610	55.000	0.00	0.00	40.20	4.58
545	659	8.000780	AGAAAGAAAGAAAAAGCACTACACAT	57.999	30.769	0.00	0.00	0.00	3.21
559	673	0.253044	ACACATGCCGGCTGTATTCT	59.747	50.000	29.70	9.34	0.00	2.40
577	692	0.734889	CTTGCACGGGCCTATTTCAG	59.265	55.000	7.46	0.00	40.13	3.02
612	754	1.702182	TGCACAGATTTTGAAGCCCA	58.298	45.000	0.00	0.00	32.85	5.36
732	2013	2.719376	AACTTGCGTGCAGGTTCAT	58.281	47.368	15.52	0.00	41.38	2.57
734	2015	1.237285	ACTTGCGTGCAGGTTCATCC	61.237	55.000	8.40	0.00	32.14	3.51
739	2020	2.359850	TGCAGGTTCATCCACGGC	60.360	61.111	0.00	0.00	39.02	5.68
751	2032	1.153823	CCACGGCGACTTGTCTAGG	60.154	63.158	16.62	0.00	0.00	3.02
775	2060	1.544246	TGTTCTGACGTCCGATCACAT	59.456	47.619	14.12	0.00	0.00	3.21
794	2079	0.676466	TGGATTGGTCGGTGCATCAC	60.676	55.000	0.00	0.00	0.00	3.06
795	2080	0.392998	GGATTGGTCGGTGCATCACT	60.393	55.000	0.00	0.00	34.40	3.41
797	2082	2.627945	GATTGGTCGGTGCATCACTAA	58.372	47.619	0.00	0.00	34.40	2.24
798	2083	2.552599	TTGGTCGGTGCATCACTAAA	57.447	45.000	0.00	0.00	34.40	1.85
849	2142	8.587608	AGTCCAAATTCATTTCATCTGCTTAAA	58.412	29.630	0.00	0.00	0.00	1.52
856	2149	7.369803	TCATTTCATCTGCTTAAAGACAGAC	57.630	36.000	5.02	0.00	45.19	3.51
870	2163	3.161067	AGACAGACTCTTAGCAGCAGAA	58.839	45.455	0.00	0.00	0.00	3.02
976	2276	0.981183	ATTAGGTGAACGTCCTGGCA	59.019	50.000	4.59	0.00	36.60	4.92
1016	2324	4.778143	GATGGCTTCCCGGCGTGT	62.778	66.667	6.01	0.00	42.02	4.49
1447	2755	3.645157	AATTTCTTCGTGCGCGCCG	62.645	57.895	30.77	29.24	38.14	6.46
1494	2808	2.356313	CTCAACGCGTGGCTCACT	60.356	61.111	14.98	0.00	31.34	3.41
1503	2817	0.799917	CGTGGCTCACTCTCATGACG	60.800	60.000	0.00	0.00	31.34	4.35
1806	3276	2.697431	GAGGATCATCGTCTTCCTCG	57.303	55.000	0.00	0.00	44.39	4.63
1906	3379	3.479269	GGCGACGGACGAAGCAAG	61.479	66.667	3.67	0.00	45.77	4.01
1907	3380	4.135493	GCGACGGACGAAGCAAGC	62.135	66.667	3.67	0.00	45.77	4.01
1908	3381	2.430921	CGACGGACGAAGCAAGCT	60.431	61.111	0.00	0.00	45.77	3.74
1909	3382	1.154093	CGACGGACGAAGCAAGCTA	60.154	57.895	0.00	0.00	45.77	3.32
1911	3384	1.425412	GACGGACGAAGCAAGCTAAA	58.575	50.000	0.00	0.00	0.00	1.85
1912	3385	1.796459	GACGGACGAAGCAAGCTAAAA	59.204	47.619	0.00	0.00	0.00	1.52
1913	3386	2.415512	GACGGACGAAGCAAGCTAAAAT	59.584	45.455	0.00	0.00	0.00	1.82
1914	3387	2.159627	ACGGACGAAGCAAGCTAAAATG	59.840	45.455	0.00	0.00	0.00	2.32
1915	3388	2.519963	GGACGAAGCAAGCTAAAATGC	58.480	47.619	0.00	0.00	42.87	3.56
2229	3702	2.513204	CTGGTGCAGCTCATCGGG	60.513	66.667	18.08	0.00	0.00	5.14
2694	5860	0.392706	ACACGATGCACCTGACTCAA	59.607	50.000	0.00	0.00	0.00	3.02
2724	5890	3.682292	CTGGTACGGCAGGGGAAGC	62.682	68.421	0.00	0.00	0.00	3.86
2936	6102	2.435059	GCCTCAGGTCGGCACTTC	60.435	66.667	0.00	0.00	46.77	3.01
2948	6114	2.002586	CGGCACTTCCACTACATCTTG	58.997	52.381	0.00	0.00	34.01	3.02
2994	6344	0.167470	CTGGCACATCTTCAGTTGCG	59.833	55.000	0.00	0.00	38.20	4.85
3100	6450	1.923204	CAAGCTCGACTGAGAAATCCG	59.077	52.381	0.00	0.00	45.57	4.18
3133	6483	6.585695	AATGAGAAGCAGATCAACATGTTT	57.414	33.333	8.77	0.00	0.00	2.83
3198	6548	7.041030	ACAGGTGTATCGTAGATTCATAGTGAG	60.041	40.741	0.00	0.00	45.12	3.51
3207	6557	8.687242	TCGTAGATTCATAGTGAGACAGAATTT	58.313	33.333	0.00	0.00	0.00	1.82
3220	6917	6.311445	TGAGACAGAATTTGATTCGTAGAAGC	59.689	38.462	0.00	0.00	45.90	3.86
3224	6921	7.097192	ACAGAATTTGATTCGTAGAAGCTACA	58.903	34.615	5.55	0.00	45.90	2.74
3295	7073	9.996554	GGAATTTTGTTATTTATTATCCCCCTG	57.003	33.333	0.00	0.00	0.00	4.45
3301	7079	1.785353	TTATTATCCCCCTGGGCGCC	61.785	60.000	21.18	21.18	43.94	6.53
3312	7090	2.124695	GGGCGCCGGAAAGAGATT	60.125	61.111	22.54	0.00	0.00	2.40
3313	7091	2.180862	GGGCGCCGGAAAGAGATTC	61.181	63.158	22.54	0.00	37.31	2.52
3314	7092	1.449601	GGCGCCGGAAAGAGATTCA	60.450	57.895	12.58	0.00	39.98	2.57
3317	7095	1.009829	CGCCGGAAAGAGATTCAAGG	58.990	55.000	5.05	0.00	39.98	3.61
3435	7215	0.476771	CCTTACACCCACCCACACTT	59.523	55.000	0.00	0.00	0.00	3.16
3460	7240	2.091885	AGTTTCCTTTGCCTTCTGACCA	60.092	45.455	0.00	0.00	0.00	4.02
3474	7254	2.036346	TCTGACCATCATACATCGCTGG	59.964	50.000	0.00	0.00	0.00	4.85
3494	7274	2.511659	GGAAGTGGGGGTACAAAAGAC	58.488	52.381	0.00	0.00	0.00	3.01
3666	7767	5.174761	GCAACACAAATTAGCATCGTCAAAA	59.825	36.000	0.00	0.00	0.00	2.44
3677	7778	5.030295	AGCATCGTCAAAATAAATCTTGCG	58.970	37.500	0.00	0.00	0.00	4.85
3686	8275	8.578769	GTCAAAATAAATCTTGCGATCTCAAAC	58.421	33.333	0.00	0.00	0.00	2.93
3691	8280	1.089920	CTTGCGATCTCAAACCCCAG	58.910	55.000	0.00	0.00	0.00	4.45
3692	8281	0.690192	TTGCGATCTCAAACCCCAGA	59.310	50.000	0.00	0.00	0.00	3.86
3926	8524	7.945033	TTTATGCTGGACATTTGAAGAAAAC	57.055	32.000	0.00	0.00	40.38	2.43
3949	8547	4.989797	CCATCAAGCTTTGCAATAACACAA	59.010	37.500	0.00	0.00	0.00	3.33
4028	9631	7.572523	TGCACAGATAATAATTTCAGAAGGG	57.427	36.000	0.00	0.00	0.00	3.95
4030	9633	6.547510	GCACAGATAATAATTTCAGAAGGGGT	59.452	38.462	0.00	0.00	0.00	4.95
4031	9634	7.469181	GCACAGATAATAATTTCAGAAGGGGTG	60.469	40.741	0.00	0.00	0.00	4.61
4032	9635	7.775093	CACAGATAATAATTTCAGAAGGGGTGA	59.225	37.037	0.00	0.00	0.00	4.02
4033	9636	7.995488	ACAGATAATAATTTCAGAAGGGGTGAG	59.005	37.037	0.00	0.00	0.00	3.51
4082	9685	1.053264	CCTGGAGGGCATCACTAGCT	61.053	60.000	0.08	0.00	0.00	3.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	5.530915	GGCTTCTTTTGTTGCCCTTATTTTT	59.469	36.000	0.00	0.00	39.49	1.94
40	41	5.063204	GGCTTCTTTTGTTGCCCTTATTTT	58.937	37.500	0.00	0.00	39.49	1.82
41	42	4.347876	AGGCTTCTTTTGTTGCCCTTATTT	59.652	37.500	0.00	0.00	45.94	1.40
42	43	3.903714	AGGCTTCTTTTGTTGCCCTTATT	59.096	39.130	0.00	0.00	45.94	1.40
43	44	3.510459	AGGCTTCTTTTGTTGCCCTTAT	58.490	40.909	0.00	0.00	45.94	1.73
44	45	2.957474	AGGCTTCTTTTGTTGCCCTTA	58.043	42.857	0.00	0.00	45.94	2.69
45	46	1.793414	AGGCTTCTTTTGTTGCCCTT	58.207	45.000	0.00	0.00	45.94	3.95
46	47	2.239400	GTAGGCTTCTTTTGTTGCCCT	58.761	47.619	0.00	0.00	45.94	5.19
47	48	1.960689	TGTAGGCTTCTTTTGTTGCCC	59.039	47.619	0.00	0.00	45.94	5.36
48	49	3.381045	GTTGTAGGCTTCTTTTGTTGCC	58.619	45.455	0.00	0.00	45.21	4.52
55	56	4.625564	CGGGATAAGGTTGTAGGCTTCTTT	60.626	45.833	0.00	0.00	0.00	2.52
96	98	1.953559	GGCATCATAAGCCGTCTTCA	58.046	50.000	0.00	0.00	43.15	3.02
328	334	3.577848	CCTTGATCCATTTGTTTGTCCCA	59.422	43.478	0.00	0.00	0.00	4.37
343	349	6.536224	CAGGTTATTTGGCATTTTCCTTGATC	59.464	38.462	0.00	0.00	0.00	2.92
462	575	1.434513	TTGGCATCTTCCACACCCCT	61.435	55.000	0.00	0.00	35.50	4.79
541	654	1.064505	CAAGAATACAGCCGGCATGTG	59.935	52.381	31.54	21.18	32.02	3.21
545	659	1.002746	TGCAAGAATACAGCCGGCA	60.003	52.632	31.54	8.70	0.00	5.69
559	673	0.326595	TCTGAAATAGGCCCGTGCAA	59.673	50.000	0.00	0.00	40.13	4.08
577	692	3.446799	TGTGCATGCTGTTTGTTTCTTC	58.553	40.909	20.33	0.00	0.00	2.87
612	754	0.966920	CCCCCGCGTTAGATCACTAT	59.033	55.000	4.92	0.00	0.00	2.12
732	2013	1.592400	CCTAGACAAGTCGCCGTGGA	61.592	60.000	0.00	0.00	34.09	4.02
734	2015	1.805945	GCCTAGACAAGTCGCCGTG	60.806	63.158	0.00	0.00	34.09	4.94
739	2020	3.430218	CAGAACAAAGCCTAGACAAGTCG	59.570	47.826	0.00	0.00	34.09	4.18
751	2032	1.390463	GATCGGACGTCAGAACAAAGC	59.610	52.381	22.02	0.00	0.00	3.51
775	2060	0.676466	GTGATGCACCGACCAATCCA	60.676	55.000	0.00	0.00	0.00	3.41
794	2079	5.236478	ACCGCGTCAAATCATCCTATTTTAG	59.764	40.000	4.92	0.00	0.00	1.85
795	2080	5.120399	ACCGCGTCAAATCATCCTATTTTA	58.880	37.500	4.92	0.00	0.00	1.52
797	2082	3.541632	ACCGCGTCAAATCATCCTATTT	58.458	40.909	4.92	0.00	0.00	1.40
798	2083	3.131396	GACCGCGTCAAATCATCCTATT	58.869	45.455	4.92	0.00	32.09	1.73
849	2142	2.801483	TCTGCTGCTAAGAGTCTGTCT	58.199	47.619	0.00	0.00	36.94	3.41
856	2149	7.598493	GGAAGTTATATCTTCTGCTGCTAAGAG	59.402	40.741	18.58	2.06	42.19	2.85
870	2163	5.353394	TTGGCGACTTGGAAGTTATATCT	57.647	39.130	0.00	0.00	39.88	1.98
983	2283	2.491022	ATCGTCGGCTAGCCAGGAC	61.491	63.158	32.47	27.87	35.37	3.85
1232	2540	3.691342	CGAAGACCTGGTCGGCCA	61.691	66.667	20.49	9.26	43.73	5.36
1494	2808	2.180674	CGTGAGGTCCGTCATGAGA	58.819	57.895	0.00	0.00	35.75	3.27
1806	3276	1.862806	GACCACAAGCGCTGTTCTC	59.137	57.895	12.58	4.50	35.47	2.87
1836	3306	0.602638	CCAACAGCGCTACAGAACCA	60.603	55.000	10.99	0.00	0.00	3.67
2694	5860	0.976073	CGTACCAGTCCCAGACCCAT	60.976	60.000	0.00	0.00	32.18	4.00
2936	6102	0.749454	GGCAGCCCAAGATGTAGTGG	60.749	60.000	0.00	0.00	34.44	4.00
3014	6364	2.564771	CAACTGAAGAAGTGCCAGTGA	58.435	47.619	0.00	0.00	40.61	3.41
3100	6450	2.094675	TGCTTCTCATTTTAGCAGGGC	58.905	47.619	0.00	0.00	39.79	5.19
3141	6491	6.578163	TGTCAAGATCATCTGATGCAAAAA	57.422	33.333	12.78	0.00	34.37	1.94
3158	6508	7.015289	CGATACACCTGTACAAAATTGTCAAG	58.985	38.462	1.37	2.16	42.35	3.02
3198	6548	6.654793	AGCTTCTACGAATCAAATTCTGTC	57.345	37.500	0.00	0.00	37.13	3.51
3295	7073	2.124695	AATCTCTTTCCGGCGCCC	60.125	61.111	23.46	2.84	0.00	6.13
3301	7079	3.686726	CACCTTCCTTGAATCTCTTTCCG	59.313	47.826	0.00	0.00	33.04	4.30
3303	7081	4.911390	TCCACCTTCCTTGAATCTCTTTC	58.089	43.478	0.00	0.00	34.72	2.62
3312	7090	3.588842	AGTTGATGATCCACCTTCCTTGA	59.411	43.478	0.00	0.00	0.00	3.02
3313	7091	3.960571	AGTTGATGATCCACCTTCCTTG	58.039	45.455	0.00	0.00	0.00	3.61
3314	7092	5.983333	ATAGTTGATGATCCACCTTCCTT	57.017	39.130	0.00	0.00	0.00	3.36
3435	7215	4.097892	GTCAGAAGGCAAAGGAAACTGAAA	59.902	41.667	0.00	0.00	42.68	2.69
3460	7240	2.224378	CCACTTCCCAGCGATGTATGAT	60.224	50.000	0.00	0.00	0.00	2.45
3474	7254	2.511659	GTCTTTTGTACCCCCACTTCC	58.488	52.381	0.00	0.00	0.00	3.46
3494	7274	1.226974	CGCAGTGTATGGAGGACCG	60.227	63.158	0.00	0.00	39.42	4.79
3517	7297	3.433615	CAGTTGCTACTGCTGTTTAGTCC	59.566	47.826	15.25	0.00	44.81	3.85
3562	7342	0.676184	ACGATGGATCATGGACCGAG	59.324	55.000	0.00	0.00	0.00	4.63
3565	7666	2.755650	GTGTACGATGGATCATGGACC	58.244	52.381	0.00	0.00	0.00	4.46
3677	7778	4.293662	AGTTTCTCTGGGGTTTGAGATC	57.706	45.455	0.00	0.00	38.85	2.75
3686	8275	2.820197	GCTTTGGTAAGTTTCTCTGGGG	59.180	50.000	0.00	0.00	33.74	4.96
3691	8280	8.319143	TGTGTATTAGCTTTGGTAAGTTTCTC	57.681	34.615	0.00	0.00	33.74	2.87
3692	8281	8.730680	CATGTGTATTAGCTTTGGTAAGTTTCT	58.269	33.333	0.00	0.00	33.74	2.52
3804	8400	5.363580	CCAATTGGCCATAGTATTTCCAGTT	59.636	40.000	12.53	3.63	0.00	3.16
3865	8463	1.713937	CGGCGGCTCATGTTTATGCA	61.714	55.000	7.61	0.00	34.21	3.96
3926	8524	4.558178	TGTGTTATTGCAAAGCTTGATGG	58.442	39.130	1.71	0.00	0.00	3.51
3949	8547	8.752005	TCCAAATGTTAGCATAGCTTCTTATT	57.248	30.769	0.00	0.00	40.44	1.40
4021	9624	4.092116	AGTCTTTTTCTCACCCCTTCTG	57.908	45.455	0.00	0.00	0.00	3.02
4024	9627	3.204382	TGGAAGTCTTTTTCTCACCCCTT	59.796	43.478	0.00	0.00	0.00	3.95
4026	9629	3.223674	TGGAAGTCTTTTTCTCACCCC	57.776	47.619	0.00	0.00	0.00	4.95
4028	9631	3.318275	GGGTTGGAAGTCTTTTTCTCACC	59.682	47.826	0.00	0.00	32.68	4.02
4030	9633	3.211045	CGGGTTGGAAGTCTTTTTCTCA	58.789	45.455	0.00	0.00	0.00	3.27
4031	9634	2.552743	CCGGGTTGGAAGTCTTTTTCTC	59.447	50.000	0.00	0.00	42.00	2.87
4032	9635	2.173996	TCCGGGTTGGAAGTCTTTTTCT	59.826	45.455	0.00	0.00	46.38	2.52
4033	9636	2.578786	TCCGGGTTGGAAGTCTTTTTC	58.421	47.619	0.00	0.00	46.38	2.29
4082	9685	6.831353	TGTAAATTTTCAGAACACTTCCTCCA	59.169	34.615	0.00	0.00	0.00	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.