Multiple sequence alignment - TraesCS5B01G064100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G064100 chr5B 100.000 5242 0 0 1 5242 72014973 72020214 0.000000e+00 9681
1 TraesCS5B01G064100 chr5B 83.949 866 134 3 3308 4173 71674325 71673465 0.000000e+00 824
2 TraesCS5B01G064100 chr5B 83.333 864 115 12 3317 4179 72008299 72007464 0.000000e+00 771
3 TraesCS5B01G064100 chr5B 80.940 745 96 34 967 1683 72010356 72009630 9.920000e-152 547
4 TraesCS5B01G064100 chr5B 100.000 217 0 0 2497 2713 72017361 72017577 8.180000e-108 401
5 TraesCS5B01G064100 chr5B 100.000 217 0 0 2389 2605 72017469 72017685 8.180000e-108 401
6 TraesCS5B01G064100 chr5B 90.952 210 19 0 3037 3246 72008697 72008488 3.090000e-72 283
7 TraesCS5B01G064100 chr5B 83.824 272 30 10 2225 2487 72009416 72009150 4.050000e-61 246
8 TraesCS5B01G064100 chr5B 88.205 195 23 0 3052 3246 71674708 71674514 3.160000e-57 233
9 TraesCS5B01G064100 chr5B 100.000 109 0 0 2605 2713 72017361 72017469 8.900000e-48 202
10 TraesCS5B01G064100 chr5B 100.000 109 0 0 2389 2497 72017577 72017685 8.900000e-48 202
11 TraesCS5B01G064100 chr5B 84.967 153 17 5 2275 2424 71675287 71675138 3.270000e-32 150
12 TraesCS5B01G064100 chr5D 92.658 1689 103 9 2605 4282 59224463 59222785 0.000000e+00 2412
13 TraesCS5B01G064100 chr5D 94.896 960 48 1 4283 5242 137120226 137119268 0.000000e+00 1500
14 TraesCS5B01G064100 chr5D 94.693 961 50 1 4282 5242 249407181 249408140 0.000000e+00 1491
15 TraesCS5B01G064100 chr5D 87.379 1030 77 24 747 1751 59226123 59225122 0.000000e+00 1133
16 TraesCS5B01G064100 chr5D 92.842 461 24 6 2046 2497 59224815 59224355 0.000000e+00 660
17 TraesCS5B01G064100 chr5D 87.372 586 47 15 1 561 424890247 424889664 0.000000e+00 647
18 TraesCS5B01G064100 chr5D 85.481 551 78 2 3309 3858 59246225 59246774 1.640000e-159 573
19 TraesCS5B01G064100 chr5D 85.236 508 67 7 3681 4185 59295733 59295231 2.800000e-142 516
20 TraesCS5B01G064100 chr5D 84.375 384 51 7 1318 1695 59244447 59244827 8.290000e-98 368
21 TraesCS5B01G064100 chr5D 79.197 548 92 18 1142 1683 59358747 59358216 1.390000e-95 361
22 TraesCS5B01G064100 chr5D 92.537 201 15 0 3037 3237 59245833 59246033 6.640000e-74 289
23 TraesCS5B01G064100 chr5D 88.745 231 21 4 3943 4173 59246826 59247051 1.440000e-70 278
24 TraesCS5B01G064100 chr5D 82.707 266 35 8 2225 2487 59245153 59245410 5.280000e-55 226
25 TraesCS5B01G064100 chr5D 85.279 197 18 5 1067 1256 59244230 59244422 5.360000e-45 193
26 TraesCS5B01G064100 chr5D 95.413 109 5 0 2497 2605 59224463 59224355 1.940000e-39 174
27 TraesCS5B01G064100 chr5A 91.779 1265 96 4 3025 4283 47645777 47644515 0.000000e+00 1753
28 TraesCS5B01G064100 chr5A 88.186 711 50 19 1054 1736 47647358 47646654 0.000000e+00 817
29 TraesCS5B01G064100 chr5A 83.141 866 118 12 3309 4173 47652099 47652937 0.000000e+00 765
30 TraesCS5B01G064100 chr5A 88.556 568 55 5 1 558 426905863 426906430 0.000000e+00 680
31 TraesCS5B01G064100 chr5A 95.526 380 11 4 2124 2497 47646650 47646271 2.090000e-168 603
32 TraesCS5B01G064100 chr5A 90.168 417 19 10 2605 3009 47646383 47645977 1.670000e-144 523
33 TraesCS5B01G064100 chr5A 80.609 624 80 22 1075 1683 47650230 47650827 1.340000e-120 444
34 TraesCS5B01G064100 chr5A 90.741 270 21 2 1490 1756 407430023 407429755 1.800000e-94 357
35 TraesCS5B01G064100 chr5A 90.406 271 17 5 747 1013 47647624 47647359 1.080000e-91 348
36 TraesCS5B01G064100 chr5A 93.035 201 14 0 3037 3237 47651705 47651905 1.430000e-75 294
37 TraesCS5B01G064100 chr5A 83.333 264 13 12 1925 2160 455599727 455599467 1.140000e-51 215
38 TraesCS5B01G064100 chr5A 82.955 264 14 12 1925 2160 407429581 407429321 5.320000e-50 209
39 TraesCS5B01G064100 chr5A 96.460 113 0 2 2497 2605 47646383 47646271 3.220000e-42 183
40 TraesCS5B01G064100 chr5A 81.061 264 19 9 1925 2160 488929896 488929636 1.160000e-41 182
41 TraesCS5B01G064100 chr5A 90.400 125 12 0 2225 2349 47651054 47651178 1.170000e-36 165
42 TraesCS5B01G064100 chr3D 95.016 963 47 1 4280 5242 197594848 197593887 0.000000e+00 1511
43 TraesCS5B01G064100 chr3D 87.521 585 42 14 1 558 422556865 422556285 0.000000e+00 647
44 TraesCS5B01G064100 chr3D 83.944 573 75 9 1 558 87433375 87432805 2.780000e-147 532
45 TraesCS5B01G064100 chr4D 94.808 963 49 1 4280 5242 359895883 359896844 0.000000e+00 1500
46 TraesCS5B01G064100 chr6D 94.792 960 48 2 4283 5242 291166888 291167845 0.000000e+00 1495
47 TraesCS5B01G064100 chr6D 94.704 963 47 3 4280 5242 131577992 131578950 0.000000e+00 1493
48 TraesCS5B01G064100 chr6D 88.184 347 35 3 217 558 90346062 90345717 4.890000e-110 409
49 TraesCS5B01G064100 chr1D 94.704 963 50 1 4280 5242 12678819 12679780 0.000000e+00 1495
50 TraesCS5B01G064100 chr1D 94.792 960 48 2 4283 5242 51050005 51050962 0.000000e+00 1495
51 TraesCS5B01G064100 chr1D 93.458 214 14 0 345 558 370122289 370122502 8.470000e-83 318
52 TraesCS5B01G064100 chr1D 82.278 316 51 4 1369 1680 10125272 10124958 8.650000e-68 268
53 TraesCS5B01G064100 chr1D 82.109 313 54 2 1369 1680 10155806 10155495 3.110000e-67 267
54 TraesCS5B01G064100 chr1D 86.170 188 22 4 3966 4151 10153814 10153629 3.200000e-47 200
55 TraesCS5B01G064100 chr1D 81.283 187 31 3 3051 3235 90150441 90150625 1.180000e-31 148
56 TraesCS5B01G064100 chr1D 81.356 177 31 2 1369 1544 4821477 4821652 5.470000e-30 143
57 TraesCS5B01G064100 chr1D 93.103 87 6 0 1170 1256 10155983 10155897 1.530000e-25 128
58 TraesCS5B01G064100 chr2D 94.502 964 52 1 4279 5242 455558054 455557092 0.000000e+00 1485
59 TraesCS5B01G064100 chr2D 82.339 855 134 6 3308 4161 41478357 41477519 0.000000e+00 726
60 TraesCS5B01G064100 chr2D 79.846 650 96 27 1067 1695 41781547 41780912 4.820000e-120 442
61 TraesCS5B01G064100 chr2D 90.000 210 21 0 3037 3246 41478745 41478536 6.690000e-69 272
62 TraesCS5B01G064100 chr1A 87.741 571 50 14 1 558 63846233 63846796 0.000000e+00 649
63 TraesCS5B01G064100 chr1A 86.316 570 68 6 1 561 555087013 555086445 3.470000e-171 612
64 TraesCS5B01G064100 chr1A 82.123 179 30 2 1369 1546 6318045 6318222 9.090000e-33 152
65 TraesCS5B01G064100 chrUn 86.860 586 46 15 1 556 30844895 30845479 1.240000e-175 627
66 TraesCS5B01G064100 chr2A 86.464 591 47 11 1 558 588385194 588384604 7.460000e-173 617
67 TraesCS5B01G064100 chr2A 87.681 276 28 6 292 563 72715508 72715235 3.050000e-82 316
68 TraesCS5B01G064100 chr7A 86.631 561 61 8 1 558 145771187 145770638 4.490000e-170 608
69 TraesCS5B01G064100 chr7A 86.154 260 30 4 299 558 11881850 11882103 5.170000e-70 276
70 TraesCS5B01G064100 chr7A 82.090 268 16 13 1925 2163 630427891 630427627 3.200000e-47 200
71 TraesCS5B01G064100 chr7A 81.818 264 16 14 1925 2160 43282396 43282137 5.360000e-45 193
72 TraesCS5B01G064100 chr3B 92.035 339 24 3 1 338 377884580 377884916 1.710000e-129 473
73 TraesCS5B01G064100 chr3A 91.852 270 18 2 1490 1756 705655130 705654862 1.780000e-99 374
74 TraesCS5B01G064100 chr3A 91.111 270 19 3 1490 1756 1419520 1419253 1.390000e-95 361
75 TraesCS5B01G064100 chr3A 88.214 280 30 2 282 561 27524596 27524320 1.090000e-86 331
76 TraesCS5B01G064100 chr3A 82.576 264 15 12 1925 2160 1419079 1418819 2.470000e-48 204
77 TraesCS5B01G064100 chr3A 80.682 264 19 11 1925 2160 705654691 705654432 5.400000e-40 176
78 TraesCS5B01G064100 chr4A 89.630 270 22 3 1490 1756 245315819 245315553 6.500000e-89 339
79 TraesCS5B01G064100 chr1B 83.799 179 27 2 1369 1546 22701290 22701467 9.030000e-38 169
80 TraesCS5B01G064100 chr1B 83.240 179 28 2 1369 1546 7989349 7989526 4.200000e-36 163
81 TraesCS5B01G064100 chr1B 82.162 185 33 0 3051 3235 144930684 144930868 5.430000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G064100 chr5B 72014973 72020214 5241 False 2177.400000 9681 100.000000 1 5242 5 chr5B.!!$F1 5241
1 TraesCS5B01G064100 chr5B 72007464 72010356 2892 True 461.750000 771 84.762250 967 4179 4 chr5B.!!$R2 3212
2 TraesCS5B01G064100 chr5B 71673465 71675287 1822 True 402.333333 824 85.707000 2275 4173 3 chr5B.!!$R1 1898
3 TraesCS5B01G064100 chr5D 137119268 137120226 958 True 1500.000000 1500 94.896000 4283 5242 1 chr5D.!!$R3 959
4 TraesCS5B01G064100 chr5D 249407181 249408140 959 False 1491.000000 1491 94.693000 4282 5242 1 chr5D.!!$F1 960
5 TraesCS5B01G064100 chr5D 59222785 59226123 3338 True 1094.750000 2412 92.073000 747 4282 4 chr5D.!!$R5 3535
6 TraesCS5B01G064100 chr5D 424889664 424890247 583 True 647.000000 647 87.372000 1 561 1 chr5D.!!$R4 560
7 TraesCS5B01G064100 chr5D 59295231 59295733 502 True 516.000000 516 85.236000 3681 4185 1 chr5D.!!$R1 504
8 TraesCS5B01G064100 chr5D 59358216 59358747 531 True 361.000000 361 79.197000 1142 1683 1 chr5D.!!$R2 541
9 TraesCS5B01G064100 chr5D 59244230 59247051 2821 False 321.166667 573 86.520667 1067 4173 6 chr5D.!!$F2 3106
10 TraesCS5B01G064100 chr5A 47644515 47647624 3109 True 704.500000 1753 92.087500 747 4283 6 chr5A.!!$R3 3536
11 TraesCS5B01G064100 chr5A 426905863 426906430 567 False 680.000000 680 88.556000 1 558 1 chr5A.!!$F1 557
12 TraesCS5B01G064100 chr5A 47650230 47652937 2707 False 417.000000 765 86.796250 1075 4173 4 chr5A.!!$F2 3098
13 TraesCS5B01G064100 chr5A 407429321 407430023 702 True 283.000000 357 86.848000 1490 2160 2 chr5A.!!$R4 670
14 TraesCS5B01G064100 chr3D 197593887 197594848 961 True 1511.000000 1511 95.016000 4280 5242 1 chr3D.!!$R2 962
15 TraesCS5B01G064100 chr3D 422556285 422556865 580 True 647.000000 647 87.521000 1 558 1 chr3D.!!$R3 557
16 TraesCS5B01G064100 chr3D 87432805 87433375 570 True 532.000000 532 83.944000 1 558 1 chr3D.!!$R1 557
17 TraesCS5B01G064100 chr4D 359895883 359896844 961 False 1500.000000 1500 94.808000 4280 5242 1 chr4D.!!$F1 962
18 TraesCS5B01G064100 chr6D 291166888 291167845 957 False 1495.000000 1495 94.792000 4283 5242 1 chr6D.!!$F2 959
19 TraesCS5B01G064100 chr6D 131577992 131578950 958 False 1493.000000 1493 94.704000 4280 5242 1 chr6D.!!$F1 962
20 TraesCS5B01G064100 chr1D 12678819 12679780 961 False 1495.000000 1495 94.704000 4280 5242 1 chr1D.!!$F2 962
21 TraesCS5B01G064100 chr1D 51050005 51050962 957 False 1495.000000 1495 94.792000 4283 5242 1 chr1D.!!$F3 959
22 TraesCS5B01G064100 chr2D 455557092 455558054 962 True 1485.000000 1485 94.502000 4279 5242 1 chr2D.!!$R2 963
23 TraesCS5B01G064100 chr2D 41477519 41478745 1226 True 499.000000 726 86.169500 3037 4161 2 chr2D.!!$R3 1124
24 TraesCS5B01G064100 chr2D 41780912 41781547 635 True 442.000000 442 79.846000 1067 1695 1 chr2D.!!$R1 628
25 TraesCS5B01G064100 chr1A 63846233 63846796 563 False 649.000000 649 87.741000 1 558 1 chr1A.!!$F2 557
26 TraesCS5B01G064100 chr1A 555086445 555087013 568 True 612.000000 612 86.316000 1 561 1 chr1A.!!$R1 560
27 TraesCS5B01G064100 chrUn 30844895 30845479 584 False 627.000000 627 86.860000 1 556 1 chrUn.!!$F1 555
28 TraesCS5B01G064100 chr2A 588384604 588385194 590 True 617.000000 617 86.464000 1 558 1 chr2A.!!$R2 557
29 TraesCS5B01G064100 chr7A 145770638 145771187 549 True 608.000000 608 86.631000 1 558 1 chr7A.!!$R2 557
30 TraesCS5B01G064100 chr3A 1418819 1419520 701 True 282.500000 361 86.843500 1490 2160 2 chr3A.!!$R2 670
31 TraesCS5B01G064100 chr3A 705654432 705655130 698 True 275.000000 374 86.267000 1490 2160 2 chr3A.!!$R3 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 682 0.036732 TACTGGCAGCTCTGTTTGGG 59.963 55.0 15.89 0.0 0.00 4.12 F
645 704 0.037605 CTCCTCGTTAGTGCGGGTTT 60.038 55.0 0.00 0.0 0.00 3.27 F
2539 3004 0.038021 TGCCCACTTGCTGATTGCTA 59.962 50.0 0.00 0.0 43.37 3.49 F
2647 3112 0.038021 TGCCCACTTGCTGATTGCTA 59.962 50.0 0.00 0.0 43.37 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2560 3025 0.029834 CTGCAAGTGCTGTTCACCAC 59.970 55.0 4.69 0.0 46.81 4.16 R
2561 3026 0.107263 TCTGCAAGTGCTGTTCACCA 60.107 50.0 4.69 0.0 46.81 4.17 R
3816 4781 0.318441 TGAGAGGACCGTTCTGCTTG 59.682 55.0 0.00 0.0 0.00 4.01 R
4503 5482 0.868406 GTCCAGACTTGTCCTTTGCG 59.132 55.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.898627 CTTCTCGCGGTGCACGTCT 62.899 63.158 11.45 0.00 46.52 4.18
77 78 2.192263 GGAGGGATGGAGAAGACTTGT 58.808 52.381 0.00 0.00 0.00 3.16
85 86 0.249911 GAGAAGACTTGTGTGGCGGT 60.250 55.000 0.00 0.00 0.00 5.68
102 103 1.737838 GGTGCAATGATCTGGAACGA 58.262 50.000 0.00 0.00 0.00 3.85
129 130 0.603439 AAACCATACGAAACGGCGGT 60.603 50.000 13.24 0.00 35.12 5.68
169 170 1.893137 CTGACTATATAGTGCGGGCCA 59.107 52.381 20.13 9.40 36.50 5.36
313 322 6.292114 CGAAAATATAGACAACGTGCATAGCA 60.292 38.462 0.00 0.00 35.60 3.49
338 347 1.379977 TCGACTCGGCTCAATCCCT 60.380 57.895 0.00 0.00 0.00 4.20
339 348 1.227089 CGACTCGGCTCAATCCCTG 60.227 63.158 0.00 0.00 0.00 4.45
340 349 1.522580 GACTCGGCTCAATCCCTGC 60.523 63.158 0.00 0.00 0.00 4.85
341 350 2.587194 CTCGGCTCAATCCCTGCG 60.587 66.667 0.00 0.00 0.00 5.18
342 351 3.376935 CTCGGCTCAATCCCTGCGT 62.377 63.158 0.00 0.00 0.00 5.24
390 446 5.010922 GTCTCCTCTTCTCATGCTCATACAT 59.989 44.000 0.00 0.00 0.00 2.29
393 449 4.989797 CCTCTTCTCATGCTCATACATGTC 59.010 45.833 0.00 0.00 46.15 3.06
430 486 5.248477 ACCTTATAAAGAGGTGCAAGTCTCA 59.752 40.000 13.25 1.17 45.59 3.27
431 489 6.069963 ACCTTATAAAGAGGTGCAAGTCTCAT 60.070 38.462 13.25 7.09 45.59 2.90
436 494 4.298103 AGAGGTGCAAGTCTCATTCAAT 57.702 40.909 13.25 0.00 32.76 2.57
442 500 6.014840 AGGTGCAAGTCTCATTCAATTTTCAT 60.015 34.615 0.00 0.00 0.00 2.57
502 560 1.550072 GTGTGCATAAATGGGCCAAGT 59.450 47.619 11.89 3.47 0.00 3.16
517 576 4.931601 GGGCCAAGTGAATTTCAGAATTTC 59.068 41.667 4.39 9.87 35.65 2.17
522 581 7.867403 GCCAAGTGAATTTCAGAATTTCAGTTA 59.133 33.333 26.23 6.18 35.65 2.24
558 617 8.306761 CCAAAAGACTACTAGCAAAATTCCAAT 58.693 33.333 0.00 0.00 0.00 3.16
562 621 8.738645 AGACTACTAGCAAAATTCCAATAAGG 57.261 34.615 0.00 0.00 39.47 2.69
563 622 7.283354 AGACTACTAGCAAAATTCCAATAAGGC 59.717 37.037 0.00 0.00 37.29 4.35
564 623 6.889722 ACTACTAGCAAAATTCCAATAAGGCA 59.110 34.615 0.00 0.00 37.29 4.75
565 624 6.212888 ACTAGCAAAATTCCAATAAGGCAG 57.787 37.500 0.00 0.00 37.29 4.85
566 625 5.951747 ACTAGCAAAATTCCAATAAGGCAGA 59.048 36.000 0.00 0.00 37.29 4.26
567 626 5.334724 AGCAAAATTCCAATAAGGCAGAG 57.665 39.130 0.00 0.00 37.29 3.35
568 627 4.161001 AGCAAAATTCCAATAAGGCAGAGG 59.839 41.667 0.00 0.00 37.29 3.69
569 628 4.681512 GCAAAATTCCAATAAGGCAGAGGG 60.682 45.833 0.00 0.00 37.29 4.30
570 629 2.371658 ATTCCAATAAGGCAGAGGGC 57.628 50.000 0.00 0.00 43.74 5.19
579 638 2.032681 GCAGAGGGCCACGACTTT 59.967 61.111 6.18 0.00 36.11 2.66
580 639 2.035442 GCAGAGGGCCACGACTTTC 61.035 63.158 6.18 0.00 36.11 2.62
581 640 1.738099 CAGAGGGCCACGACTTTCG 60.738 63.158 6.18 0.00 46.93 3.46
582 641 2.434359 GAGGGCCACGACTTTCGG 60.434 66.667 6.18 0.00 45.59 4.30
583 642 4.699522 AGGGCCACGACTTTCGGC 62.700 66.667 6.18 0.00 45.59 5.54
586 645 3.423154 GCCACGACTTTCGGCAGG 61.423 66.667 0.03 0.69 45.59 4.85
587 646 2.742372 CCACGACTTTCGGCAGGG 60.742 66.667 0.03 0.00 45.59 4.45
588 647 2.030562 CACGACTTTCGGCAGGGT 59.969 61.111 0.03 0.00 45.59 4.34
589 648 2.027625 CACGACTTTCGGCAGGGTC 61.028 63.158 0.03 0.00 45.59 4.46
590 649 2.434359 CGACTTTCGGCAGGGTCC 60.434 66.667 0.00 0.00 36.00 4.46
591 650 2.747686 GACTTTCGGCAGGGTCCA 59.252 61.111 0.00 0.00 0.00 4.02
592 651 1.072505 GACTTTCGGCAGGGTCCAA 59.927 57.895 0.00 0.00 0.00 3.53
593 652 0.955919 GACTTTCGGCAGGGTCCAAG 60.956 60.000 0.00 0.00 0.00 3.61
594 653 1.073199 CTTTCGGCAGGGTCCAAGT 59.927 57.895 0.00 0.00 0.00 3.16
595 654 1.228124 TTTCGGCAGGGTCCAAGTG 60.228 57.895 0.00 0.00 0.00 3.16
596 655 2.690653 TTTCGGCAGGGTCCAAGTGG 62.691 60.000 0.00 0.00 0.00 4.00
597 656 3.636231 CGGCAGGGTCCAAGTGGA 61.636 66.667 0.00 0.00 43.08 4.02
598 657 2.352805 GGCAGGGTCCAAGTGGAG 59.647 66.667 0.00 0.00 46.49 3.86
599 658 2.224159 GGCAGGGTCCAAGTGGAGA 61.224 63.158 0.00 0.00 46.49 3.71
600 659 1.003233 GCAGGGTCCAAGTGGAGAC 60.003 63.158 0.00 0.00 46.49 3.36
601 660 1.484444 GCAGGGTCCAAGTGGAGACT 61.484 60.000 0.00 0.00 46.49 3.24
602 661 0.610687 CAGGGTCCAAGTGGAGACTC 59.389 60.000 0.00 0.00 46.49 3.36
603 662 0.900647 AGGGTCCAAGTGGAGACTCG 60.901 60.000 0.00 0.00 46.49 4.18
604 663 1.186267 GGGTCCAAGTGGAGACTCGT 61.186 60.000 0.00 0.00 46.49 4.18
605 664 1.542492 GGTCCAAGTGGAGACTCGTA 58.458 55.000 0.00 0.00 46.49 3.43
606 665 1.201880 GGTCCAAGTGGAGACTCGTAC 59.798 57.143 0.00 0.00 46.49 3.67
607 666 2.161030 GTCCAAGTGGAGACTCGTACT 58.839 52.381 0.00 5.45 46.49 2.73
608 667 2.095161 GTCCAAGTGGAGACTCGTACTG 60.095 54.545 10.64 6.45 46.49 2.74
609 668 1.202582 CCAAGTGGAGACTCGTACTGG 59.797 57.143 10.64 8.30 37.39 4.00
610 669 0.889306 AAGTGGAGACTCGTACTGGC 59.111 55.000 10.64 0.00 0.00 4.85
611 670 0.251209 AGTGGAGACTCGTACTGGCA 60.251 55.000 9.46 0.00 0.00 4.92
612 671 0.171455 GTGGAGACTCGTACTGGCAG 59.829 60.000 14.16 14.16 0.00 4.85
613 672 1.139947 GGAGACTCGTACTGGCAGC 59.860 63.158 15.89 0.00 0.00 5.25
614 673 1.316706 GGAGACTCGTACTGGCAGCT 61.317 60.000 15.89 0.69 0.00 4.24
615 674 0.099791 GAGACTCGTACTGGCAGCTC 59.900 60.000 15.89 7.34 0.00 4.09
616 675 0.322997 AGACTCGTACTGGCAGCTCT 60.323 55.000 15.89 0.00 0.00 4.09
617 676 0.179150 GACTCGTACTGGCAGCTCTG 60.179 60.000 15.89 2.14 0.00 3.35
618 677 0.896019 ACTCGTACTGGCAGCTCTGT 60.896 55.000 15.89 4.70 0.00 3.41
619 678 0.244994 CTCGTACTGGCAGCTCTGTT 59.755 55.000 15.89 0.00 0.00 3.16
620 679 0.679505 TCGTACTGGCAGCTCTGTTT 59.320 50.000 15.89 0.00 0.00 2.83
621 680 0.792640 CGTACTGGCAGCTCTGTTTG 59.207 55.000 15.89 0.00 0.00 2.93
622 681 1.160137 GTACTGGCAGCTCTGTTTGG 58.840 55.000 15.89 0.00 0.00 3.28
623 682 0.036732 TACTGGCAGCTCTGTTTGGG 59.963 55.000 15.89 0.00 0.00 4.12
624 683 2.598394 TGGCAGCTCTGTTTGGGC 60.598 61.111 0.00 0.00 0.00 5.36
625 684 2.598394 GGCAGCTCTGTTTGGGCA 60.598 61.111 0.00 0.00 0.00 5.36
626 685 2.647297 GCAGCTCTGTTTGGGCAC 59.353 61.111 0.00 0.00 0.00 5.01
627 686 1.900498 GCAGCTCTGTTTGGGCACT 60.900 57.895 0.00 0.00 0.00 4.40
628 687 1.860484 GCAGCTCTGTTTGGGCACTC 61.860 60.000 0.00 0.00 0.00 3.51
629 688 1.073897 AGCTCTGTTTGGGCACTCC 59.926 57.895 0.00 0.00 0.00 3.85
630 689 1.073897 GCTCTGTTTGGGCACTCCT 59.926 57.895 0.00 0.00 36.20 3.69
631 690 0.957888 GCTCTGTTTGGGCACTCCTC 60.958 60.000 0.00 0.00 36.20 3.71
632 691 0.671781 CTCTGTTTGGGCACTCCTCG 60.672 60.000 0.00 0.00 36.20 4.63
633 692 1.071471 CTGTTTGGGCACTCCTCGT 59.929 57.895 0.00 0.00 36.20 4.18
634 693 0.535102 CTGTTTGGGCACTCCTCGTT 60.535 55.000 0.00 0.00 36.20 3.85
635 694 0.759959 TGTTTGGGCACTCCTCGTTA 59.240 50.000 0.00 0.00 36.20 3.18
636 695 1.270625 TGTTTGGGCACTCCTCGTTAG 60.271 52.381 0.00 0.00 36.20 2.34
637 696 1.053424 TTTGGGCACTCCTCGTTAGT 58.947 50.000 0.00 0.00 36.20 2.24
638 697 0.320374 TTGGGCACTCCTCGTTAGTG 59.680 55.000 9.27 9.27 45.80 2.74
641 700 4.478195 CACTCCTCGTTAGTGCGG 57.522 61.111 0.00 0.00 38.08 5.69
642 701 1.153823 CACTCCTCGTTAGTGCGGG 60.154 63.158 0.00 0.00 38.08 6.13
643 702 1.605738 ACTCCTCGTTAGTGCGGGT 60.606 57.895 0.00 0.00 0.00 5.28
644 703 1.183676 ACTCCTCGTTAGTGCGGGTT 61.184 55.000 0.00 0.00 0.00 4.11
645 704 0.037605 CTCCTCGTTAGTGCGGGTTT 60.038 55.000 0.00 0.00 0.00 3.27
646 705 0.393820 TCCTCGTTAGTGCGGGTTTT 59.606 50.000 0.00 0.00 0.00 2.43
647 706 0.515564 CCTCGTTAGTGCGGGTTTTG 59.484 55.000 0.00 0.00 0.00 2.44
648 707 1.223187 CTCGTTAGTGCGGGTTTTGT 58.777 50.000 0.00 0.00 0.00 2.83
649 708 2.406130 CTCGTTAGTGCGGGTTTTGTA 58.594 47.619 0.00 0.00 0.00 2.41
650 709 2.801679 CTCGTTAGTGCGGGTTTTGTAA 59.198 45.455 0.00 0.00 0.00 2.41
651 710 2.543430 TCGTTAGTGCGGGTTTTGTAAC 59.457 45.455 0.00 0.00 0.00 2.50
652 711 2.659826 CGTTAGTGCGGGTTTTGTAACG 60.660 50.000 0.00 0.00 37.48 3.18
653 712 2.237393 TAGTGCGGGTTTTGTAACGT 57.763 45.000 0.00 0.00 35.00 3.99
654 713 1.381522 AGTGCGGGTTTTGTAACGTT 58.618 45.000 5.88 5.88 35.00 3.99
655 714 1.331447 AGTGCGGGTTTTGTAACGTTC 59.669 47.619 2.82 0.00 35.00 3.95
656 715 0.662085 TGCGGGTTTTGTAACGTTCC 59.338 50.000 2.82 0.00 35.00 3.62
657 716 0.040157 GCGGGTTTTGTAACGTTCCC 60.040 55.000 2.82 7.30 35.00 3.97
658 717 1.307097 CGGGTTTTGTAACGTTCCCA 58.693 50.000 17.76 8.54 35.00 4.37
659 718 1.264826 CGGGTTTTGTAACGTTCCCAG 59.735 52.381 17.76 8.81 35.00 4.45
660 719 2.574450 GGGTTTTGTAACGTTCCCAGA 58.426 47.619 14.01 2.01 35.00 3.86
661 720 3.151554 GGGTTTTGTAACGTTCCCAGAT 58.848 45.455 14.01 0.00 35.00 2.90
662 721 4.325972 GGGTTTTGTAACGTTCCCAGATA 58.674 43.478 14.01 0.00 35.00 1.98
663 722 4.761227 GGGTTTTGTAACGTTCCCAGATAA 59.239 41.667 14.01 0.00 35.00 1.75
664 723 5.416639 GGGTTTTGTAACGTTCCCAGATAAT 59.583 40.000 14.01 0.00 35.00 1.28
665 724 6.598850 GGGTTTTGTAACGTTCCCAGATAATA 59.401 38.462 14.01 0.00 35.00 0.98
666 725 7.121020 GGGTTTTGTAACGTTCCCAGATAATAA 59.879 37.037 14.01 0.00 35.00 1.40
667 726 7.964559 GGTTTTGTAACGTTCCCAGATAATAAC 59.035 37.037 2.82 0.00 35.00 1.89
668 727 7.614124 TTTGTAACGTTCCCAGATAATAACC 57.386 36.000 2.82 0.00 0.00 2.85
669 728 6.549433 TGTAACGTTCCCAGATAATAACCT 57.451 37.500 2.82 0.00 0.00 3.50
670 729 6.342906 TGTAACGTTCCCAGATAATAACCTG 58.657 40.000 2.82 0.00 0.00 4.00
671 730 5.687166 AACGTTCCCAGATAATAACCTGA 57.313 39.130 0.00 0.00 32.37 3.86
672 731 5.019785 ACGTTCCCAGATAATAACCTGAC 57.980 43.478 0.00 0.00 32.37 3.51
673 732 4.468510 ACGTTCCCAGATAATAACCTGACA 59.531 41.667 0.00 0.00 32.37 3.58
674 733 5.130477 ACGTTCCCAGATAATAACCTGACAT 59.870 40.000 0.00 0.00 32.37 3.06
675 734 5.696724 CGTTCCCAGATAATAACCTGACATC 59.303 44.000 0.00 0.00 32.37 3.06
676 735 6.463049 CGTTCCCAGATAATAACCTGACATCT 60.463 42.308 0.00 0.00 32.37 2.90
677 736 6.672266 TCCCAGATAATAACCTGACATCTC 57.328 41.667 0.00 0.00 32.37 2.75
678 737 6.385443 TCCCAGATAATAACCTGACATCTCT 58.615 40.000 0.00 0.00 32.37 3.10
679 738 6.268617 TCCCAGATAATAACCTGACATCTCTG 59.731 42.308 0.00 0.00 32.37 3.35
680 739 6.042552 CCCAGATAATAACCTGACATCTCTGT 59.957 42.308 0.00 0.00 38.67 3.41
681 740 7.233553 CCCAGATAATAACCTGACATCTCTGTA 59.766 40.741 0.00 0.00 35.14 2.74
682 741 8.085296 CCAGATAATAACCTGACATCTCTGTAC 58.915 40.741 0.00 0.00 35.14 2.90
683 742 8.633561 CAGATAATAACCTGACATCTCTGTACA 58.366 37.037 0.00 0.00 35.14 2.90
684 743 9.373450 AGATAATAACCTGACATCTCTGTACAT 57.627 33.333 0.00 0.00 35.14 2.29
689 748 9.815306 ATAACCTGACATCTCTGTACATATACT 57.185 33.333 0.00 0.00 35.14 2.12
690 749 7.753309 ACCTGACATCTCTGTACATATACTC 57.247 40.000 0.00 0.00 35.14 2.59
691 750 7.522542 ACCTGACATCTCTGTACATATACTCT 58.477 38.462 0.00 0.00 35.14 3.24
692 751 7.663905 ACCTGACATCTCTGTACATATACTCTC 59.336 40.741 0.00 0.00 35.14 3.20
693 752 7.882791 CCTGACATCTCTGTACATATACTCTCT 59.117 40.741 0.00 0.00 35.14 3.10
694 753 9.283768 CTGACATCTCTGTACATATACTCTCTT 57.716 37.037 0.00 0.00 35.14 2.85
695 754 9.634021 TGACATCTCTGTACATATACTCTCTTT 57.366 33.333 0.00 0.00 35.14 2.52
700 759 9.175312 TCTCTGTACATATACTCTCTTTTTCGT 57.825 33.333 0.00 0.00 32.00 3.85
701 760 9.440784 CTCTGTACATATACTCTCTTTTTCGTC 57.559 37.037 0.00 0.00 32.00 4.20
702 761 9.175312 TCTGTACATATACTCTCTTTTTCGTCT 57.825 33.333 0.00 0.00 32.00 4.18
703 762 9.227490 CTGTACATATACTCTCTTTTTCGTCTG 57.773 37.037 0.00 0.00 32.00 3.51
704 763 8.953313 TGTACATATACTCTCTTTTTCGTCTGA 58.047 33.333 0.00 0.00 32.00 3.27
705 764 9.784680 GTACATATACTCTCTTTTTCGTCTGAA 57.215 33.333 0.00 0.00 0.00 3.02
707 766 9.877178 ACATATACTCTCTTTTTCGTCTGAAAT 57.123 29.630 0.00 0.00 43.32 2.17
710 769 8.833231 ATACTCTCTTTTTCGTCTGAAATGAA 57.167 30.769 0.00 0.00 43.32 2.57
711 770 7.736447 ACTCTCTTTTTCGTCTGAAATGAAT 57.264 32.000 0.00 0.00 43.32 2.57
712 771 8.833231 ACTCTCTTTTTCGTCTGAAATGAATA 57.167 30.769 0.00 0.00 43.32 1.75
713 772 8.930760 ACTCTCTTTTTCGTCTGAAATGAATAG 58.069 33.333 0.00 0.00 43.32 1.73
714 773 8.256611 TCTCTTTTTCGTCTGAAATGAATAGG 57.743 34.615 0.00 0.00 43.32 2.57
715 774 6.842163 TCTTTTTCGTCTGAAATGAATAGGC 58.158 36.000 0.00 0.00 43.32 3.93
716 775 6.429692 TCTTTTTCGTCTGAAATGAATAGGCA 59.570 34.615 0.00 0.00 43.32 4.75
717 776 5.801350 TTTCGTCTGAAATGAATAGGCAG 57.199 39.130 0.00 0.00 39.13 4.85
718 777 4.471904 TCGTCTGAAATGAATAGGCAGT 57.528 40.909 0.00 0.00 0.00 4.40
719 778 4.183865 TCGTCTGAAATGAATAGGCAGTG 58.816 43.478 0.00 0.00 0.00 3.66
720 779 3.242543 CGTCTGAAATGAATAGGCAGTGC 60.243 47.826 6.55 6.55 0.00 4.40
721 780 3.944015 GTCTGAAATGAATAGGCAGTGCT 59.056 43.478 16.11 3.64 0.00 4.40
722 781 4.034975 GTCTGAAATGAATAGGCAGTGCTC 59.965 45.833 16.11 5.03 0.00 4.26
723 782 3.282021 TGAAATGAATAGGCAGTGCTCC 58.718 45.455 16.11 0.00 0.00 4.70
724 783 3.054139 TGAAATGAATAGGCAGTGCTCCT 60.054 43.478 16.11 7.11 37.72 3.69
725 784 2.634815 ATGAATAGGCAGTGCTCCTG 57.365 50.000 16.11 0.20 44.53 3.86
732 791 2.743928 CAGTGCTCCTGCCGGTTC 60.744 66.667 1.90 0.00 38.71 3.62
733 792 4.021925 AGTGCTCCTGCCGGTTCC 62.022 66.667 1.90 0.00 38.71 3.62
734 793 4.021925 GTGCTCCTGCCGGTTCCT 62.022 66.667 1.90 0.00 38.71 3.36
735 794 3.706373 TGCTCCTGCCGGTTCCTC 61.706 66.667 1.90 0.00 38.71 3.71
736 795 4.475135 GCTCCTGCCGGTTCCTCC 62.475 72.222 1.90 0.00 0.00 4.30
755 814 4.270325 CCTCCGAGAAACGAATGAATTACC 59.730 45.833 0.00 0.00 45.77 2.85
890 949 3.753272 CCACGAGATTGTCAATGGAAACT 59.247 43.478 1.88 0.00 34.24 2.66
918 977 2.234908 CCTCCCGTTCTGATCTTGTCTT 59.765 50.000 0.00 0.00 0.00 3.01
943 1005 5.581085 CACCGAAGAAGTCAAATACCCTAAG 59.419 44.000 0.00 0.00 0.00 2.18
944 1006 4.571176 CCGAAGAAGTCAAATACCCTAAGC 59.429 45.833 0.00 0.00 0.00 3.09
945 1007 5.420409 CGAAGAAGTCAAATACCCTAAGCT 58.580 41.667 0.00 0.00 0.00 3.74
947 1009 6.697892 CGAAGAAGTCAAATACCCTAAGCTAG 59.302 42.308 0.00 0.00 0.00 3.42
948 1010 6.487299 AGAAGTCAAATACCCTAAGCTAGG 57.513 41.667 0.00 0.00 45.81 3.02
949 1011 4.691326 AGTCAAATACCCTAAGCTAGGC 57.309 45.455 0.00 0.00 44.86 3.93
950 1012 3.069729 AGTCAAATACCCTAAGCTAGGCG 59.930 47.826 0.00 0.00 44.86 5.52
952 1014 3.453353 TCAAATACCCTAAGCTAGGCGTT 59.547 43.478 0.00 0.00 44.86 4.84
953 1015 4.650588 TCAAATACCCTAAGCTAGGCGTTA 59.349 41.667 0.00 0.00 44.86 3.18
956 1018 1.612463 ACCCTAAGCTAGGCGTTATCG 59.388 52.381 0.00 0.00 44.86 2.92
957 1019 1.067776 CCCTAAGCTAGGCGTTATCGG 60.068 57.143 0.00 0.00 44.86 4.18
1017 1087 0.601311 GCACAACACCGAGAGCTCTT 60.601 55.000 19.36 0.00 0.00 2.85
1020 1095 1.373497 AACACCGAGAGCTCTTGCG 60.373 57.895 23.71 19.60 45.42 4.85
1039 1114 2.703798 TTCCGAGTAACCGAGGCCG 61.704 63.158 0.00 0.00 0.00 6.13
1057 1132 2.383527 GGTCGTTCGGAAGCAGCAG 61.384 63.158 0.00 0.00 0.00 4.24
1058 1133 1.664965 GTCGTTCGGAAGCAGCAGT 60.665 57.895 0.00 0.00 0.00 4.40
1059 1134 0.388134 GTCGTTCGGAAGCAGCAGTA 60.388 55.000 0.00 0.00 0.00 2.74
1060 1135 0.388134 TCGTTCGGAAGCAGCAGTAC 60.388 55.000 0.00 0.00 0.00 2.73
1159 1243 3.518998 GCGGCTGCTCCTCGTCTA 61.519 66.667 11.21 0.00 38.39 2.59
1243 1327 2.398554 CGACGGCATCCCCAACAAG 61.399 63.158 0.00 0.00 0.00 3.16
1266 1380 2.692041 ACCTCTTGGTACGTATACAGCC 59.308 50.000 0.00 2.34 46.43 4.85
1310 1433 4.269523 GTGTGCCCTGTCCTGCCA 62.270 66.667 0.00 0.00 0.00 4.92
1311 1434 3.259314 TGTGCCCTGTCCTGCCAT 61.259 61.111 0.00 0.00 0.00 4.40
1312 1435 2.753043 GTGCCCTGTCCTGCCATG 60.753 66.667 0.00 0.00 0.00 3.66
1313 1436 4.051167 TGCCCTGTCCTGCCATGG 62.051 66.667 7.63 7.63 0.00 3.66
1315 1438 4.828296 CCCTGTCCTGCCATGGCC 62.828 72.222 33.44 18.47 41.09 5.36
1329 1456 1.271840 ATGGCCGGGCTCTCTGTTTA 61.272 55.000 29.87 5.33 0.00 2.01
1468 1597 4.373116 GCGAACCGGTCTCAGGCA 62.373 66.667 8.04 0.00 0.00 4.75
1655 1790 1.003355 AGGATGCGGATTATGGCGG 60.003 57.895 0.00 0.00 0.00 6.13
1756 2027 6.764877 AGTGTCGTTCTACAAACATGTAAG 57.235 37.500 0.00 0.00 0.00 2.34
1758 2029 6.200286 AGTGTCGTTCTACAAACATGTAAGTG 59.800 38.462 12.03 7.70 0.00 3.16
1763 2034 7.438757 TCGTTCTACAAACATGTAAGTGCTTTA 59.561 33.333 12.03 0.00 0.00 1.85
1764 2035 7.740346 CGTTCTACAAACATGTAAGTGCTTTAG 59.260 37.037 12.03 3.20 0.00 1.85
1765 2036 8.770828 GTTCTACAAACATGTAAGTGCTTTAGA 58.229 33.333 12.03 5.12 0.00 2.10
1766 2037 8.534333 TCTACAAACATGTAAGTGCTTTAGAG 57.466 34.615 12.03 2.05 0.00 2.43
1805 2099 4.687262 TTAAGGAGGGAGGTCTCACTAA 57.313 45.455 2.32 0.00 44.73 2.24
1809 2103 2.696187 GGAGGGAGGTCTCACTAATCAC 59.304 54.545 2.32 0.00 44.73 3.06
1814 2108 4.957327 GGGAGGTCTCACTAATCACTACTT 59.043 45.833 0.14 0.00 0.00 2.24
1853 2147 6.569780 ACCAATGAAACCAAGTGAAAACTAC 58.430 36.000 0.00 0.00 0.00 2.73
1900 2197 2.998316 AAGGAAGTATGGCAGAGAGC 57.002 50.000 0.00 0.00 44.65 4.09
1902 2199 1.761784 AGGAAGTATGGCAGAGAGCTG 59.238 52.381 0.00 0.00 44.79 4.24
1908 2205 2.183046 GGCAGAGAGCTGACGTCC 59.817 66.667 14.12 0.00 45.17 4.79
1922 2304 4.091509 GCTGACGTCCTACAAACATGTAAG 59.908 45.833 14.12 0.00 0.00 2.34
1923 2305 5.204409 TGACGTCCTACAAACATGTAAGT 57.796 39.130 14.12 3.34 0.00 2.24
1980 2362 7.628235 TCAACAAAATTGCAACAACATACATG 58.372 30.769 0.00 0.00 0.00 3.21
1984 2366 7.387122 ACAAAATTGCAACAACATACATGCATA 59.613 29.630 0.00 0.00 46.97 3.14
1985 2367 7.528481 AAATTGCAACAACATACATGCATAG 57.472 32.000 0.00 0.00 46.97 2.23
1986 2368 5.641783 TTGCAACAACATACATGCATAGT 57.358 34.783 0.00 2.80 46.97 2.12
1987 2369 6.749923 TTGCAACAACATACATGCATAGTA 57.250 33.333 0.00 5.17 46.97 1.82
2003 2385 7.381789 TGCATAGTAGTTATTAATCCACCCA 57.618 36.000 0.00 0.00 0.00 4.51
2023 2406 2.228582 CACAAAGAATGATCCAACGCCA 59.771 45.455 0.00 0.00 0.00 5.69
2035 2418 1.133025 CCAACGCCAGCATAAGAAAGG 59.867 52.381 0.00 0.00 0.00 3.11
2038 2421 2.084546 ACGCCAGCATAAGAAAGGAAC 58.915 47.619 0.00 0.00 0.00 3.62
2044 2450 5.825151 GCCAGCATAAGAAAGGAACTATTCT 59.175 40.000 0.00 0.00 38.49 2.40
2081 2491 6.582295 ACAATTGCTTAAACATTTAGTCAGCG 59.418 34.615 5.05 0.00 32.88 5.18
2149 2575 3.570975 TGTTGACTTGTCTAGCCGTCTAA 59.429 43.478 2.35 0.00 0.00 2.10
2173 2599 8.773404 AAGATATTTGACTAGTACACCAACAC 57.227 34.615 0.00 0.00 0.00 3.32
2198 2634 8.149647 ACTAGAAAGCTCATTCTCTTCCATATG 58.850 37.037 3.91 0.00 40.13 1.78
2494 2959 8.507524 CAGATTATGCTTATCATGATGTGGAT 57.492 34.615 18.72 17.29 38.19 3.41
2495 2960 9.609346 CAGATTATGCTTATCATGATGTGGATA 57.391 33.333 18.72 16.40 38.19 2.59
2502 2967 9.440773 TGCTTATCATGATGTGGATATAAAGAC 57.559 33.333 18.72 7.29 0.00 3.01
2503 2968 9.440773 GCTTATCATGATGTGGATATAAAGACA 57.559 33.333 18.72 0.00 0.00 3.41
2521 2986 7.821595 AAAGACATTATTGAACATGCATGTG 57.178 32.000 31.98 18.79 41.61 3.21
2522 2987 5.345702 AGACATTATTGAACATGCATGTGC 58.654 37.500 31.98 30.04 41.61 4.57
2523 2988 4.435425 ACATTATTGAACATGCATGTGCC 58.565 39.130 31.98 24.91 41.61 5.01
2524 2989 3.523606 TTATTGAACATGCATGTGCCC 57.476 42.857 31.98 22.63 41.61 5.36
2525 2990 1.268066 ATTGAACATGCATGTGCCCA 58.732 45.000 31.98 24.68 41.61 5.36
2526 2991 0.317799 TTGAACATGCATGTGCCCAC 59.682 50.000 31.98 19.68 41.61 4.61
2527 2992 0.540133 TGAACATGCATGTGCCCACT 60.540 50.000 31.98 15.95 41.61 4.00
2528 2993 0.604578 GAACATGCATGTGCCCACTT 59.395 50.000 31.98 15.19 41.61 3.16
2529 2994 0.319083 AACATGCATGTGCCCACTTG 59.681 50.000 31.98 3.92 41.61 3.16
2533 2998 4.084265 CATGTGCCCACTTGCTGA 57.916 55.556 0.00 0.00 31.27 4.26
2534 2999 2.575108 CATGTGCCCACTTGCTGAT 58.425 52.632 0.00 0.00 31.27 2.90
2535 3000 0.892755 CATGTGCCCACTTGCTGATT 59.107 50.000 0.00 0.00 31.27 2.57
2536 3001 0.892755 ATGTGCCCACTTGCTGATTG 59.107 50.000 0.00 0.00 0.00 2.67
2537 3002 1.080298 GTGCCCACTTGCTGATTGC 60.080 57.895 0.00 0.00 43.25 3.56
2538 3003 1.228644 TGCCCACTTGCTGATTGCT 60.229 52.632 0.00 0.00 43.37 3.91
2539 3004 0.038021 TGCCCACTTGCTGATTGCTA 59.962 50.000 0.00 0.00 43.37 3.49
2540 3005 0.453390 GCCCACTTGCTGATTGCTAC 59.547 55.000 0.00 0.00 43.37 3.58
2541 3006 1.952367 GCCCACTTGCTGATTGCTACT 60.952 52.381 0.00 0.00 43.37 2.57
2542 3007 1.741706 CCCACTTGCTGATTGCTACTG 59.258 52.381 0.00 0.00 43.37 2.74
2543 3008 2.430465 CCACTTGCTGATTGCTACTGT 58.570 47.619 0.00 0.00 43.37 3.55
2544 3009 2.816087 CCACTTGCTGATTGCTACTGTT 59.184 45.455 0.00 0.00 43.37 3.16
2545 3010 3.254166 CCACTTGCTGATTGCTACTGTTT 59.746 43.478 0.00 0.00 43.37 2.83
2546 3011 4.261741 CCACTTGCTGATTGCTACTGTTTT 60.262 41.667 0.00 0.00 43.37 2.43
2547 3012 5.048782 CCACTTGCTGATTGCTACTGTTTTA 60.049 40.000 0.00 0.00 43.37 1.52
2548 3013 6.437928 CACTTGCTGATTGCTACTGTTTTAA 58.562 36.000 0.00 0.00 43.37 1.52
2549 3014 6.917477 CACTTGCTGATTGCTACTGTTTTAAA 59.083 34.615 0.00 0.00 43.37 1.52
2550 3015 7.596248 CACTTGCTGATTGCTACTGTTTTAAAT 59.404 33.333 0.00 0.00 43.37 1.40
2551 3016 7.809806 ACTTGCTGATTGCTACTGTTTTAAATC 59.190 33.333 0.00 0.00 43.37 2.17
2552 3017 7.213216 TGCTGATTGCTACTGTTTTAAATCA 57.787 32.000 0.00 0.00 43.37 2.57
2553 3018 7.656412 TGCTGATTGCTACTGTTTTAAATCAA 58.344 30.769 0.90 0.00 43.37 2.57
2554 3019 8.140628 TGCTGATTGCTACTGTTTTAAATCAAA 58.859 29.630 0.90 0.00 43.37 2.69
2555 3020 8.977505 GCTGATTGCTACTGTTTTAAATCAAAA 58.022 29.630 0.90 0.00 34.59 2.44
2567 3032 7.884816 TTTTAAATCAAAACAACGTGGTGAA 57.115 28.000 0.00 0.00 31.05 3.18
2568 3033 6.872670 TTAAATCAAAACAACGTGGTGAAC 57.127 33.333 0.00 0.00 0.00 3.18
2569 3034 4.442375 AATCAAAACAACGTGGTGAACA 57.558 36.364 0.00 0.00 0.00 3.18
2570 3035 3.479505 TCAAAACAACGTGGTGAACAG 57.520 42.857 0.00 0.00 0.00 3.16
2571 3036 1.917303 CAAAACAACGTGGTGAACAGC 59.083 47.619 0.00 0.00 0.00 4.40
2572 3037 1.169577 AAACAACGTGGTGAACAGCA 58.830 45.000 0.00 2.51 36.34 4.41
2578 3043 4.653893 TGGTGAACAGCACTTGCA 57.346 50.000 3.62 0.00 46.86 4.08
2579 3044 2.407268 TGGTGAACAGCACTTGCAG 58.593 52.632 3.62 0.00 46.86 4.41
2580 3045 0.107263 TGGTGAACAGCACTTGCAGA 60.107 50.000 3.62 0.00 46.86 4.26
2581 3046 1.242076 GGTGAACAGCACTTGCAGAT 58.758 50.000 3.62 0.00 46.86 2.90
2582 3047 1.610522 GGTGAACAGCACTTGCAGATT 59.389 47.619 3.62 0.00 46.86 2.40
2583 3048 2.813754 GGTGAACAGCACTTGCAGATTA 59.186 45.455 3.62 0.00 46.86 1.75
2584 3049 3.441572 GGTGAACAGCACTTGCAGATTAT 59.558 43.478 3.62 0.00 46.86 1.28
2585 3050 4.409570 GTGAACAGCACTTGCAGATTATG 58.590 43.478 3.62 0.00 44.27 1.90
2601 3066 7.916914 CAGATTATGCTTATCATGATGTGGA 57.083 36.000 18.72 11.76 38.19 4.02
2602 3067 8.507524 CAGATTATGCTTATCATGATGTGGAT 57.492 34.615 18.72 17.29 38.19 3.41
2603 3068 9.609346 CAGATTATGCTTATCATGATGTGGATA 57.391 33.333 18.72 16.40 38.19 2.59
2610 3075 9.440773 TGCTTATCATGATGTGGATATAAAGAC 57.559 33.333 18.72 7.29 0.00 3.01
2611 3076 9.440773 GCTTATCATGATGTGGATATAAAGACA 57.559 33.333 18.72 0.00 0.00 3.41
2629 3094 7.821595 AAAGACATTATTGAACATGCATGTG 57.178 32.000 31.98 18.79 41.61 3.21
2630 3095 5.345702 AGACATTATTGAACATGCATGTGC 58.654 37.500 31.98 30.04 41.61 4.57
2631 3096 4.435425 ACATTATTGAACATGCATGTGCC 58.565 39.130 31.98 24.91 41.61 5.01
2632 3097 3.523606 TTATTGAACATGCATGTGCCC 57.476 42.857 31.98 22.63 41.61 5.36
2633 3098 1.268066 ATTGAACATGCATGTGCCCA 58.732 45.000 31.98 24.68 41.61 5.36
2634 3099 0.317799 TTGAACATGCATGTGCCCAC 59.682 50.000 31.98 19.68 41.61 4.61
2635 3100 0.540133 TGAACATGCATGTGCCCACT 60.540 50.000 31.98 15.95 41.61 4.00
2636 3101 0.604578 GAACATGCATGTGCCCACTT 59.395 50.000 31.98 15.19 41.61 3.16
2637 3102 0.319083 AACATGCATGTGCCCACTTG 59.681 50.000 31.98 3.92 41.61 3.16
2641 3106 4.084265 CATGTGCCCACTTGCTGA 57.916 55.556 0.00 0.00 31.27 4.26
2642 3107 2.575108 CATGTGCCCACTTGCTGAT 58.425 52.632 0.00 0.00 31.27 2.90
2643 3108 0.892755 CATGTGCCCACTTGCTGATT 59.107 50.000 0.00 0.00 31.27 2.57
2644 3109 0.892755 ATGTGCCCACTTGCTGATTG 59.107 50.000 0.00 0.00 0.00 2.67
2645 3110 1.080298 GTGCCCACTTGCTGATTGC 60.080 57.895 0.00 0.00 43.25 3.56
2646 3111 1.228644 TGCCCACTTGCTGATTGCT 60.229 52.632 0.00 0.00 43.37 3.91
2647 3112 0.038021 TGCCCACTTGCTGATTGCTA 59.962 50.000 0.00 0.00 43.37 3.49
2648 3113 0.453390 GCCCACTTGCTGATTGCTAC 59.547 55.000 0.00 0.00 43.37 3.58
2649 3114 1.952367 GCCCACTTGCTGATTGCTACT 60.952 52.381 0.00 0.00 43.37 2.57
2650 3115 1.741706 CCCACTTGCTGATTGCTACTG 59.258 52.381 0.00 0.00 43.37 2.74
2651 3116 2.430465 CCACTTGCTGATTGCTACTGT 58.570 47.619 0.00 0.00 43.37 3.55
2652 3117 2.816087 CCACTTGCTGATTGCTACTGTT 59.184 45.455 0.00 0.00 43.37 3.16
2653 3118 3.254166 CCACTTGCTGATTGCTACTGTTT 59.746 43.478 0.00 0.00 43.37 2.83
2654 3119 4.261741 CCACTTGCTGATTGCTACTGTTTT 60.262 41.667 0.00 0.00 43.37 2.43
2655 3120 5.048782 CCACTTGCTGATTGCTACTGTTTTA 60.049 40.000 0.00 0.00 43.37 1.52
2656 3121 6.437928 CACTTGCTGATTGCTACTGTTTTAA 58.562 36.000 0.00 0.00 43.37 1.52
2657 3122 6.917477 CACTTGCTGATTGCTACTGTTTTAAA 59.083 34.615 0.00 0.00 43.37 1.52
2658 3123 7.596248 CACTTGCTGATTGCTACTGTTTTAAAT 59.404 33.333 0.00 0.00 43.37 1.40
2659 3124 7.809806 ACTTGCTGATTGCTACTGTTTTAAATC 59.190 33.333 0.00 0.00 43.37 2.17
2660 3125 7.213216 TGCTGATTGCTACTGTTTTAAATCA 57.787 32.000 0.00 0.00 43.37 2.57
2661 3126 7.656412 TGCTGATTGCTACTGTTTTAAATCAA 58.344 30.769 0.90 0.00 43.37 2.57
2662 3127 8.140628 TGCTGATTGCTACTGTTTTAAATCAAA 58.859 29.630 0.90 0.00 43.37 2.69
2663 3128 8.977505 GCTGATTGCTACTGTTTTAAATCAAAA 58.022 29.630 0.90 0.00 34.59 2.44
2675 3140 7.884816 TTTTAAATCAAAACAACGTGGTGAA 57.115 28.000 0.00 0.00 31.05 3.18
2676 3141 6.872670 TTAAATCAAAACAACGTGGTGAAC 57.127 33.333 0.00 0.00 0.00 3.18
2677 3142 4.442375 AATCAAAACAACGTGGTGAACA 57.558 36.364 0.00 0.00 0.00 3.18
2678 3143 3.479505 TCAAAACAACGTGGTGAACAG 57.520 42.857 0.00 0.00 0.00 3.16
2679 3144 1.917303 CAAAACAACGTGGTGAACAGC 59.083 47.619 0.00 0.00 0.00 4.40
2680 3145 1.169577 AAACAACGTGGTGAACAGCA 58.830 45.000 0.00 2.51 36.34 4.41
2686 3151 4.653893 TGGTGAACAGCACTTGCA 57.346 50.000 3.62 0.00 46.86 4.08
2687 3152 2.407268 TGGTGAACAGCACTTGCAG 58.593 52.632 3.62 0.00 46.86 4.41
2688 3153 0.107263 TGGTGAACAGCACTTGCAGA 60.107 50.000 3.62 0.00 46.86 4.26
2689 3154 1.242076 GGTGAACAGCACTTGCAGAT 58.758 50.000 3.62 0.00 46.86 2.90
2690 3155 1.610522 GGTGAACAGCACTTGCAGATT 59.389 47.619 3.62 0.00 46.86 2.40
2691 3156 2.813754 GGTGAACAGCACTTGCAGATTA 59.186 45.455 3.62 0.00 46.86 1.75
2692 3157 3.441572 GGTGAACAGCACTTGCAGATTAT 59.558 43.478 3.62 0.00 46.86 1.28
2693 3158 4.409570 GTGAACAGCACTTGCAGATTATG 58.590 43.478 3.62 0.00 44.27 1.90
2709 3174 7.916914 CAGATTATGCTTATCATGATGTGGA 57.083 36.000 18.72 11.76 38.19 4.02
2740 3210 2.955881 CGGTGGTTCCCCTCCTCAC 61.956 68.421 0.00 0.00 41.45 3.51
2840 3319 4.438145 CGATAGTACAGCGAATGACTTCAC 59.562 45.833 0.00 0.00 38.68 3.18
2845 3324 2.027745 ACAGCGAATGACTTCACCAGAT 60.028 45.455 0.00 0.00 0.00 2.90
2846 3325 3.195610 ACAGCGAATGACTTCACCAGATA 59.804 43.478 0.00 0.00 0.00 1.98
2847 3326 4.141846 ACAGCGAATGACTTCACCAGATAT 60.142 41.667 0.00 0.00 0.00 1.63
2848 3327 4.813161 CAGCGAATGACTTCACCAGATATT 59.187 41.667 0.00 0.00 0.00 1.28
3046 3872 9.167311 GAATAAGTATCATCACTTTGTGGAACT 57.833 33.333 0.00 0.00 39.45 3.01
3050 3876 6.772716 AGTATCATCACTTTGTGGAACTTTGT 59.227 34.615 0.00 0.00 38.04 2.83
3185 4011 0.976641 CAGTCCTCCAGCACCTTACA 59.023 55.000 0.00 0.00 0.00 2.41
3239 4065 3.370840 TCAAATGGGCAGAGTAAGCAT 57.629 42.857 0.00 0.00 0.00 3.79
3273 4171 5.382616 TGATCTTGGCATAATCTTGAGCAT 58.617 37.500 10.00 0.00 0.00 3.79
3279 4177 6.812879 TGGCATAATCTTGAGCATAATCAG 57.187 37.500 0.00 0.00 0.00 2.90
3489 4452 6.421485 ACAAGTGATAGATTTCCTTGCATCT 58.579 36.000 0.00 0.00 36.78 2.90
3501 4464 0.179084 TTGCATCTAGGTACGCTGCC 60.179 55.000 0.00 0.00 31.89 4.85
3639 4602 2.636893 GGAGGCCTATGTGATCATGTCT 59.363 50.000 4.42 0.00 35.70 3.41
3687 4650 4.194720 CTCCTCGAGTTCGCCGGG 62.195 72.222 12.31 0.00 39.60 5.73
3807 4772 3.257393 CAATTACTCAAGCGCTCTCAGT 58.743 45.455 12.06 15.44 0.00 3.41
3816 4781 0.456995 GCGCTCTCAGTACTGTCACC 60.457 60.000 21.99 9.03 0.00 4.02
3839 4804 0.244994 CAGAACGGTCCTCTCACCTG 59.755 60.000 0.00 0.00 33.77 4.00
3843 4808 1.290324 CGGTCCTCTCACCTGTGTG 59.710 63.158 0.00 0.00 44.18 3.82
3851 4816 1.968493 TCTCACCTGTGTGGGTAAGTC 59.032 52.381 0.00 0.00 43.84 3.01
3870 4835 9.392259 GGTAAGTCTAACTAATATTTTGGTGCT 57.608 33.333 0.00 0.00 0.00 4.40
3892 4857 5.413523 GCTTTTTGATTTTGGAGCATGGATT 59.586 36.000 0.00 0.00 0.00 3.01
3893 4858 6.072342 GCTTTTTGATTTTGGAGCATGGATTT 60.072 34.615 0.00 0.00 0.00 2.17
3894 4859 7.522562 GCTTTTTGATTTTGGAGCATGGATTTT 60.523 33.333 0.00 0.00 0.00 1.82
3895 4860 8.915057 TTTTTGATTTTGGAGCATGGATTTTA 57.085 26.923 0.00 0.00 0.00 1.52
4179 5157 4.623002 TGTGCTTTCTACGTGTAATGACA 58.377 39.130 0.00 0.00 0.00 3.58
4181 5159 5.120053 TGTGCTTTCTACGTGTAATGACATG 59.880 40.000 0.00 0.35 46.41 3.21
4196 5174 9.676195 TGTAATGACATGTGAAATAAGTTTGTG 57.324 29.630 1.15 0.00 0.00 3.33
4199 5177 6.969366 TGACATGTGAAATAAGTTTGTGGAG 58.031 36.000 1.15 0.00 0.00 3.86
4205 5183 6.040278 TGTGAAATAAGTTTGTGGAGCAATCA 59.960 34.615 0.00 0.00 36.89 2.57
4208 5186 8.149647 TGAAATAAGTTTGTGGAGCAATCAATT 58.850 29.630 0.00 0.00 36.89 2.32
4212 5190 6.839124 AGTTTGTGGAGCAATCAATTCATA 57.161 33.333 0.00 0.00 36.89 2.15
4217 5195 7.734924 TGTGGAGCAATCAATTCATATCTAC 57.265 36.000 0.00 0.00 0.00 2.59
4316 5295 7.393796 CACAAGTATAGGGGATCTATCGTAGTT 59.606 40.741 0.00 0.00 39.30 2.24
4336 5315 8.373992 CGTAGTTCTTTTGATAAGTAAGAGTGC 58.626 37.037 0.00 0.00 30.32 4.40
4369 5348 4.268359 GAGGAGCAGAAGGAAATGACAAT 58.732 43.478 0.00 0.00 0.00 2.71
4380 5359 5.070001 AGGAAATGACAATCGGTTTTCAGA 58.930 37.500 3.35 0.00 0.00 3.27
4503 5482 2.893489 AGGTGGCTCAATCCTTTTTGTC 59.107 45.455 0.00 0.00 0.00 3.18
4544 5523 8.255206 TGGACGAACTCTTATATAAAGCAAAGA 58.745 33.333 0.00 0.00 0.00 2.52
4614 5593 4.431728 GCTCATATGATTCGCGTTCGTTAG 60.432 45.833 5.77 6.27 36.96 2.34
4646 5625 1.975680 GATATATGGGTGGACCGGTGT 59.024 52.381 14.63 0.00 44.64 4.16
4770 5749 7.369551 AGCATGAAACATATGGATCCAAATT 57.630 32.000 20.67 9.38 0.00 1.82
4773 5752 8.362639 GCATGAAACATATGGATCCAAATTAGT 58.637 33.333 20.67 10.45 0.00 2.24
4837 5816 4.285517 CCACTCTAGCAACCCATCATCTAT 59.714 45.833 0.00 0.00 0.00 1.98
4852 5831 9.014297 CCCATCATCTATTTATTACTTCCCAAC 57.986 37.037 0.00 0.00 0.00 3.77
4901 5880 5.405571 GTGAAGTGTCATGTAGTCGATGTTT 59.594 40.000 0.00 0.00 35.80 2.83
5010 5989 1.842562 CTCCCATGTCCTCAGGAACAT 59.157 52.381 0.00 0.00 31.38 2.71
5225 6204 1.661463 TTGGAGAGGAGATGGTGCTT 58.339 50.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.474660 AGAAGGGACAACAGGCCTCT 60.475 55.000 0.00 0.00 0.00 3.69
53 54 2.045047 AGTCTTCTCCATCCCTCCTTCA 59.955 50.000 0.00 0.00 0.00 3.02
77 78 1.002257 AGATCATTGCACCGCCACA 60.002 52.632 0.00 0.00 0.00 4.17
85 86 2.291365 CCATCGTTCCAGATCATTGCA 58.709 47.619 0.00 0.00 0.00 4.08
122 123 2.123597 TATCCTAGCCACCGCCGT 60.124 61.111 0.00 0.00 34.57 5.68
129 130 1.319541 GCAGACGTCTATCCTAGCCA 58.680 55.000 19.57 0.00 0.00 4.75
169 170 2.174360 GTTTACTCCCACGACCTACCT 58.826 52.381 0.00 0.00 0.00 3.08
289 298 6.943981 TGCTATGCACGTTGTCTATATTTTC 58.056 36.000 0.00 0.00 31.71 2.29
313 322 0.180642 TGAGCCGAGTCGAGGATAGT 59.819 55.000 15.64 0.00 0.00 2.12
316 325 0.671251 GATTGAGCCGAGTCGAGGAT 59.329 55.000 15.64 0.00 0.00 3.24
361 417 2.034053 GCATGAGAAGAGGAGACCTACG 59.966 54.545 0.00 0.00 31.76 3.51
390 446 2.201921 AGGTGAGCTCTTCTACGACA 57.798 50.000 16.19 0.00 0.00 4.35
393 449 7.028926 TCTTTATAAGGTGAGCTCTTCTACG 57.971 40.000 16.19 0.00 0.00 3.51
430 486 7.235399 AGTTTAGTCCCACCATGAAAATTGAAT 59.765 33.333 0.00 0.00 0.00 2.57
431 489 6.553100 AGTTTAGTCCCACCATGAAAATTGAA 59.447 34.615 0.00 0.00 0.00 2.69
436 494 7.064229 ACTAAAGTTTAGTCCCACCATGAAAA 58.936 34.615 20.34 0.00 0.00 2.29
442 500 4.903049 TGAGACTAAAGTTTAGTCCCACCA 59.097 41.667 35.91 27.91 43.61 4.17
502 560 7.765695 AGCCTAACTGAAATTCTGAAATTCA 57.234 32.000 17.33 17.33 33.93 2.57
539 598 6.889722 TGCCTTATTGGAATTTTGCTAGTAGT 59.110 34.615 0.00 0.00 38.35 2.73
562 621 2.032681 AAAGTCGTGGCCCTCTGC 59.967 61.111 0.00 0.00 40.16 4.26
563 622 1.738099 CGAAAGTCGTGGCCCTCTG 60.738 63.158 0.00 0.00 34.72 3.35
564 623 2.657237 CGAAAGTCGTGGCCCTCT 59.343 61.111 0.00 0.00 34.72 3.69
565 624 2.434359 CCGAAAGTCGTGGCCCTC 60.434 66.667 0.00 0.00 38.40 4.30
566 625 4.699522 GCCGAAAGTCGTGGCCCT 62.700 66.667 0.00 0.00 43.06 5.19
570 629 2.742372 CCCTGCCGAAAGTCGTGG 60.742 66.667 0.00 0.00 38.40 4.94
571 630 2.027625 GACCCTGCCGAAAGTCGTG 61.028 63.158 0.00 0.00 38.40 4.35
572 631 2.342648 GACCCTGCCGAAAGTCGT 59.657 61.111 0.00 0.00 38.40 4.34
573 632 2.434359 GGACCCTGCCGAAAGTCG 60.434 66.667 0.00 0.00 40.07 4.18
574 633 0.955919 CTTGGACCCTGCCGAAAGTC 60.956 60.000 0.00 0.00 0.00 3.01
575 634 1.073199 CTTGGACCCTGCCGAAAGT 59.927 57.895 0.00 0.00 0.00 2.66
576 635 1.073199 ACTTGGACCCTGCCGAAAG 59.927 57.895 0.00 0.00 0.00 2.62
577 636 1.228124 CACTTGGACCCTGCCGAAA 60.228 57.895 0.00 0.00 0.00 3.46
578 637 2.429930 CACTTGGACCCTGCCGAA 59.570 61.111 0.00 0.00 0.00 4.30
579 638 3.636231 CCACTTGGACCCTGCCGA 61.636 66.667 0.00 0.00 37.39 5.54
580 639 3.612247 CTCCACTTGGACCCTGCCG 62.612 68.421 0.00 0.00 39.78 5.69
581 640 2.224159 TCTCCACTTGGACCCTGCC 61.224 63.158 0.00 0.00 39.78 4.85
582 641 1.003233 GTCTCCACTTGGACCCTGC 60.003 63.158 0.00 0.00 39.78 4.85
583 642 0.610687 GAGTCTCCACTTGGACCCTG 59.389 60.000 0.00 0.00 39.78 4.45
584 643 0.900647 CGAGTCTCCACTTGGACCCT 60.901 60.000 0.00 0.00 39.78 4.34
585 644 1.186267 ACGAGTCTCCACTTGGACCC 61.186 60.000 0.00 0.00 39.78 4.46
586 645 1.201880 GTACGAGTCTCCACTTGGACC 59.798 57.143 0.00 0.00 40.91 4.46
587 646 2.095161 CAGTACGAGTCTCCACTTGGAC 60.095 54.545 0.00 0.00 45.64 4.02
588 647 2.160205 CAGTACGAGTCTCCACTTGGA 58.840 52.381 0.00 0.00 43.08 3.53
589 648 1.202582 CCAGTACGAGTCTCCACTTGG 59.797 57.143 0.00 0.00 38.28 3.61
590 649 1.402984 GCCAGTACGAGTCTCCACTTG 60.403 57.143 0.00 0.00 39.72 3.16
591 650 0.889306 GCCAGTACGAGTCTCCACTT 59.111 55.000 0.00 0.00 30.63 3.16
592 651 0.251209 TGCCAGTACGAGTCTCCACT 60.251 55.000 0.00 0.00 34.57 4.00
593 652 0.171455 CTGCCAGTACGAGTCTCCAC 59.829 60.000 0.00 0.00 0.00 4.02
594 653 1.595993 GCTGCCAGTACGAGTCTCCA 61.596 60.000 0.00 0.00 0.00 3.86
595 654 1.139947 GCTGCCAGTACGAGTCTCC 59.860 63.158 0.00 0.00 0.00 3.71
596 655 0.099791 GAGCTGCCAGTACGAGTCTC 59.900 60.000 0.00 0.00 0.00 3.36
597 656 0.322997 AGAGCTGCCAGTACGAGTCT 60.323 55.000 0.00 0.00 0.00 3.24
598 657 0.179150 CAGAGCTGCCAGTACGAGTC 60.179 60.000 0.00 0.00 0.00 3.36
599 658 0.896019 ACAGAGCTGCCAGTACGAGT 60.896 55.000 0.00 0.00 0.00 4.18
600 659 0.244994 AACAGAGCTGCCAGTACGAG 59.755 55.000 0.00 0.00 0.00 4.18
601 660 0.679505 AAACAGAGCTGCCAGTACGA 59.320 50.000 0.00 0.00 0.00 3.43
602 661 0.792640 CAAACAGAGCTGCCAGTACG 59.207 55.000 0.00 0.00 0.00 3.67
603 662 1.160137 CCAAACAGAGCTGCCAGTAC 58.840 55.000 0.00 0.00 0.00 2.73
604 663 0.036732 CCCAAACAGAGCTGCCAGTA 59.963 55.000 0.00 0.00 0.00 2.74
605 664 1.228367 CCCAAACAGAGCTGCCAGT 60.228 57.895 0.00 0.00 0.00 4.00
606 665 2.633509 GCCCAAACAGAGCTGCCAG 61.634 63.158 0.00 0.00 0.00 4.85
607 666 2.598394 GCCCAAACAGAGCTGCCA 60.598 61.111 0.00 0.00 0.00 4.92
608 667 2.598394 TGCCCAAACAGAGCTGCC 60.598 61.111 0.00 0.00 0.00 4.85
609 668 1.860484 GAGTGCCCAAACAGAGCTGC 61.860 60.000 0.00 0.00 0.00 5.25
610 669 1.239968 GGAGTGCCCAAACAGAGCTG 61.240 60.000 0.00 0.00 34.14 4.24
611 670 1.073897 GGAGTGCCCAAACAGAGCT 59.926 57.895 0.00 0.00 34.14 4.09
612 671 0.957888 GAGGAGTGCCCAAACAGAGC 60.958 60.000 0.00 0.00 37.41 4.09
613 672 0.671781 CGAGGAGTGCCCAAACAGAG 60.672 60.000 0.00 0.00 37.41 3.35
614 673 1.371183 CGAGGAGTGCCCAAACAGA 59.629 57.895 0.00 0.00 37.41 3.41
615 674 0.535102 AACGAGGAGTGCCCAAACAG 60.535 55.000 0.00 0.00 37.41 3.16
616 675 0.759959 TAACGAGGAGTGCCCAAACA 59.240 50.000 0.00 0.00 37.41 2.83
617 676 1.270678 ACTAACGAGGAGTGCCCAAAC 60.271 52.381 0.00 0.00 37.41 2.93
618 677 1.053424 ACTAACGAGGAGTGCCCAAA 58.947 50.000 0.00 0.00 37.41 3.28
619 678 0.320374 CACTAACGAGGAGTGCCCAA 59.680 55.000 0.00 0.00 38.06 4.12
620 679 1.972198 CACTAACGAGGAGTGCCCA 59.028 57.895 0.00 0.00 38.06 5.36
621 680 4.913126 CACTAACGAGGAGTGCCC 57.087 61.111 0.00 0.00 38.06 5.36
624 683 1.153823 CCCGCACTAACGAGGAGTG 60.154 63.158 10.43 10.43 45.90 3.51
625 684 1.183676 AACCCGCACTAACGAGGAGT 61.184 55.000 0.00 0.00 34.06 3.85
626 685 0.037605 AAACCCGCACTAACGAGGAG 60.038 55.000 0.00 0.00 34.06 3.69
627 686 0.393820 AAAACCCGCACTAACGAGGA 59.606 50.000 0.00 0.00 34.06 3.71
628 687 0.515564 CAAAACCCGCACTAACGAGG 59.484 55.000 0.00 0.00 34.06 4.63
629 688 1.223187 ACAAAACCCGCACTAACGAG 58.777 50.000 0.00 0.00 34.06 4.18
630 689 2.522836 TACAAAACCCGCACTAACGA 57.477 45.000 0.00 0.00 34.06 3.85
631 690 2.659826 CGTTACAAAACCCGCACTAACG 60.660 50.000 0.00 0.00 32.98 3.18
632 691 2.287644 ACGTTACAAAACCCGCACTAAC 59.712 45.455 0.00 0.00 31.46 2.34
633 692 2.559440 ACGTTACAAAACCCGCACTAA 58.441 42.857 0.00 0.00 31.46 2.24
634 693 2.237393 ACGTTACAAAACCCGCACTA 57.763 45.000 0.00 0.00 31.46 2.74
635 694 1.331447 GAACGTTACAAAACCCGCACT 59.669 47.619 0.00 0.00 31.46 4.40
636 695 1.597690 GGAACGTTACAAAACCCGCAC 60.598 52.381 5.39 0.00 31.46 5.34
637 696 0.662085 GGAACGTTACAAAACCCGCA 59.338 50.000 5.39 0.00 31.46 5.69
638 697 0.040157 GGGAACGTTACAAAACCCGC 60.040 55.000 13.62 0.00 31.46 6.13
639 698 1.264826 CTGGGAACGTTACAAAACCCG 59.735 52.381 13.62 5.56 40.08 5.28
640 699 2.574450 TCTGGGAACGTTACAAAACCC 58.426 47.619 13.62 12.93 37.99 4.11
641 700 5.945466 TTATCTGGGAACGTTACAAAACC 57.055 39.130 13.62 2.64 31.46 3.27
642 701 7.964559 GGTTATTATCTGGGAACGTTACAAAAC 59.035 37.037 13.62 1.02 0.00 2.43
643 702 7.884354 AGGTTATTATCTGGGAACGTTACAAAA 59.116 33.333 13.62 5.22 0.00 2.44
644 703 7.334921 CAGGTTATTATCTGGGAACGTTACAAA 59.665 37.037 13.62 0.00 0.00 2.83
645 704 6.819649 CAGGTTATTATCTGGGAACGTTACAA 59.180 38.462 13.62 0.00 0.00 2.41
646 705 6.154877 TCAGGTTATTATCTGGGAACGTTACA 59.845 38.462 13.62 8.85 0.00 2.41
647 706 6.478016 GTCAGGTTATTATCTGGGAACGTTAC 59.522 42.308 0.42 0.42 0.00 2.50
648 707 6.154877 TGTCAGGTTATTATCTGGGAACGTTA 59.845 38.462 0.00 0.00 0.00 3.18
649 708 5.046159 TGTCAGGTTATTATCTGGGAACGTT 60.046 40.000 0.00 0.00 0.00 3.99
650 709 4.468510 TGTCAGGTTATTATCTGGGAACGT 59.531 41.667 0.00 0.00 0.00 3.99
651 710 5.018539 TGTCAGGTTATTATCTGGGAACG 57.981 43.478 0.00 0.00 0.00 3.95
652 711 6.831976 AGATGTCAGGTTATTATCTGGGAAC 58.168 40.000 0.00 0.00 0.00 3.62
653 712 6.846505 AGAGATGTCAGGTTATTATCTGGGAA 59.153 38.462 0.00 0.00 0.00 3.97
654 713 6.268617 CAGAGATGTCAGGTTATTATCTGGGA 59.731 42.308 0.00 0.00 0.00 4.37
655 714 6.042552 ACAGAGATGTCAGGTTATTATCTGGG 59.957 42.308 0.00 0.00 36.75 4.45
656 715 7.060383 ACAGAGATGTCAGGTTATTATCTGG 57.940 40.000 0.00 0.00 36.75 3.86
657 716 8.633561 TGTACAGAGATGTCAGGTTATTATCTG 58.366 37.037 0.00 0.00 38.06 2.90
658 717 8.768501 TGTACAGAGATGTCAGGTTATTATCT 57.231 34.615 0.00 0.00 0.00 1.98
663 722 9.815306 AGTATATGTACAGAGATGTCAGGTTAT 57.185 33.333 0.33 0.00 33.09 1.89
664 723 9.286170 GAGTATATGTACAGAGATGTCAGGTTA 57.714 37.037 0.33 0.00 33.09 2.85
665 724 8.001875 AGAGTATATGTACAGAGATGTCAGGTT 58.998 37.037 0.33 0.00 33.09 3.50
666 725 7.522542 AGAGTATATGTACAGAGATGTCAGGT 58.477 38.462 0.33 0.00 33.09 4.00
667 726 7.882791 AGAGAGTATATGTACAGAGATGTCAGG 59.117 40.741 0.33 0.00 33.09 3.86
668 727 8.846943 AGAGAGTATATGTACAGAGATGTCAG 57.153 38.462 0.33 0.00 33.09 3.51
669 728 9.634021 AAAGAGAGTATATGTACAGAGATGTCA 57.366 33.333 0.33 0.00 33.09 3.58
674 733 9.175312 ACGAAAAAGAGAGTATATGTACAGAGA 57.825 33.333 0.33 0.00 33.09 3.10
675 734 9.440784 GACGAAAAAGAGAGTATATGTACAGAG 57.559 37.037 0.33 0.00 33.09 3.35
676 735 9.175312 AGACGAAAAAGAGAGTATATGTACAGA 57.825 33.333 0.33 0.00 33.09 3.41
677 736 9.227490 CAGACGAAAAAGAGAGTATATGTACAG 57.773 37.037 0.33 0.00 33.09 2.74
678 737 8.953313 TCAGACGAAAAAGAGAGTATATGTACA 58.047 33.333 0.00 0.00 33.09 2.90
679 738 9.784680 TTCAGACGAAAAAGAGAGTATATGTAC 57.215 33.333 0.00 0.00 0.00 2.90
681 740 9.877178 ATTTCAGACGAAAAAGAGAGTATATGT 57.123 29.630 0.00 0.00 44.12 2.29
684 743 9.923143 TTCATTTCAGACGAAAAAGAGAGTATA 57.077 29.630 0.00 0.00 44.12 1.47
685 744 8.833231 TTCATTTCAGACGAAAAAGAGAGTAT 57.167 30.769 0.00 0.00 44.12 2.12
686 745 8.833231 ATTCATTTCAGACGAAAAAGAGAGTA 57.167 30.769 0.00 0.00 44.12 2.59
687 746 7.736447 ATTCATTTCAGACGAAAAAGAGAGT 57.264 32.000 0.00 0.00 44.12 3.24
688 747 8.386606 CCTATTCATTTCAGACGAAAAAGAGAG 58.613 37.037 0.00 0.00 44.12 3.20
689 748 7.148407 GCCTATTCATTTCAGACGAAAAAGAGA 60.148 37.037 0.00 0.00 44.12 3.10
690 749 6.963805 GCCTATTCATTTCAGACGAAAAAGAG 59.036 38.462 0.00 0.00 44.12 2.85
691 750 6.429692 TGCCTATTCATTTCAGACGAAAAAGA 59.570 34.615 0.00 0.00 44.12 2.52
692 751 6.611381 TGCCTATTCATTTCAGACGAAAAAG 58.389 36.000 0.00 0.00 44.12 2.27
693 752 6.206634 ACTGCCTATTCATTTCAGACGAAAAA 59.793 34.615 0.00 0.00 44.12 1.94
694 753 5.705441 ACTGCCTATTCATTTCAGACGAAAA 59.295 36.000 0.00 0.00 44.12 2.29
695 754 5.122239 CACTGCCTATTCATTTCAGACGAAA 59.878 40.000 0.00 0.00 44.99 3.46
696 755 4.631377 CACTGCCTATTCATTTCAGACGAA 59.369 41.667 0.00 0.00 0.00 3.85
697 756 4.183865 CACTGCCTATTCATTTCAGACGA 58.816 43.478 0.00 0.00 0.00 4.20
698 757 3.242543 GCACTGCCTATTCATTTCAGACG 60.243 47.826 0.00 0.00 0.00 4.18
699 758 3.944015 AGCACTGCCTATTCATTTCAGAC 59.056 43.478 0.00 0.00 0.00 3.51
700 759 4.194640 GAGCACTGCCTATTCATTTCAGA 58.805 43.478 0.00 0.00 0.00 3.27
701 760 3.314635 GGAGCACTGCCTATTCATTTCAG 59.685 47.826 0.00 0.00 0.00 3.02
702 761 3.054139 AGGAGCACTGCCTATTCATTTCA 60.054 43.478 0.00 0.00 32.92 2.69
703 762 3.314635 CAGGAGCACTGCCTATTCATTTC 59.685 47.826 0.00 0.00 40.97 2.17
704 763 3.285484 CAGGAGCACTGCCTATTCATTT 58.715 45.455 0.00 0.00 40.97 2.32
705 764 2.928334 CAGGAGCACTGCCTATTCATT 58.072 47.619 0.00 0.00 40.97 2.57
706 765 2.634815 CAGGAGCACTGCCTATTCAT 57.365 50.000 0.00 0.00 40.97 2.57
716 775 4.021925 GGAACCGGCAGGAGCACT 62.022 66.667 10.86 0.00 44.61 4.40
717 776 3.959991 GAGGAACCGGCAGGAGCAC 62.960 68.421 10.86 0.00 44.61 4.40
718 777 3.706373 GAGGAACCGGCAGGAGCA 61.706 66.667 10.86 0.00 44.61 4.26
719 778 4.475135 GGAGGAACCGGCAGGAGC 62.475 72.222 10.86 0.05 41.02 4.70
728 787 2.000447 CATTCGTTTCTCGGAGGAACC 59.000 52.381 20.74 6.17 40.32 3.62
729 788 2.955614 TCATTCGTTTCTCGGAGGAAC 58.044 47.619 17.57 17.57 34.83 3.62
730 789 3.671008 TTCATTCGTTTCTCGGAGGAA 57.329 42.857 4.96 0.00 43.96 3.36
731 790 3.887621 ATTCATTCGTTTCTCGGAGGA 57.112 42.857 4.96 0.00 36.01 3.71
732 791 4.270325 GGTAATTCATTCGTTTCTCGGAGG 59.730 45.833 4.96 0.00 40.32 4.30
733 792 5.109903 AGGTAATTCATTCGTTTCTCGGAG 58.890 41.667 0.00 0.00 40.32 4.63
734 793 5.080969 AGGTAATTCATTCGTTTCTCGGA 57.919 39.130 0.00 0.00 40.32 4.55
735 794 6.897259 TTAGGTAATTCATTCGTTTCTCGG 57.103 37.500 0.00 0.00 40.32 4.63
736 795 7.906160 ACATTAGGTAATTCATTCGTTTCTCG 58.094 34.615 0.00 0.00 41.41 4.04
738 797 9.326413 CCTACATTAGGTAATTCATTCGTTTCT 57.674 33.333 0.00 0.00 41.18 2.52
739 798 9.321562 TCCTACATTAGGTAATTCATTCGTTTC 57.678 33.333 0.00 0.00 46.32 2.78
740 799 9.847224 ATCCTACATTAGGTAATTCATTCGTTT 57.153 29.630 0.00 0.00 46.32 3.60
741 800 9.847224 AATCCTACATTAGGTAATTCATTCGTT 57.153 29.630 0.00 0.00 46.32 3.85
755 814 5.765182 CCTTGCCCTGTTAATCCTACATTAG 59.235 44.000 0.00 0.00 0.00 1.73
918 977 3.581332 AGGGTATTTGACTTCTTCGGTGA 59.419 43.478 0.00 0.00 0.00 4.02
937 999 1.067776 CCGATAACGCCTAGCTTAGGG 60.068 57.143 0.00 0.00 46.32 3.53
943 1005 2.260481 GATAAGCCGATAACGCCTAGC 58.740 52.381 0.00 0.00 38.29 3.42
944 1006 2.516923 CGATAAGCCGATAACGCCTAG 58.483 52.381 0.00 0.00 38.29 3.02
945 1007 1.401931 GCGATAAGCCGATAACGCCTA 60.402 52.381 0.00 0.00 40.04 3.93
947 1009 1.779683 GCGATAAGCCGATAACGCC 59.220 57.895 0.00 0.00 40.04 5.68
961 1023 4.753233 CTCTGCAAGCTTATATAGGCGAT 58.247 43.478 10.83 2.30 33.04 4.58
962 1024 4.179926 CTCTGCAAGCTTATATAGGCGA 57.820 45.455 10.83 1.99 33.04 5.54
1020 1095 1.153686 GGCCTCGGTTACTCGGAAC 60.154 63.158 0.00 0.00 0.00 3.62
1039 1114 2.357034 TGCTGCTTCCGAACGACC 60.357 61.111 0.00 0.00 0.00 4.79
1044 1119 0.883153 TACGTACTGCTGCTTCCGAA 59.117 50.000 0.00 0.00 0.00 4.30
1052 1127 1.811428 CTGCTACGTACGTACTGCTG 58.189 55.000 28.70 25.63 0.00 4.41
1057 1132 1.981254 TTTGGCTGCTACGTACGTAC 58.019 50.000 23.60 19.21 0.00 3.67
1058 1133 2.164017 TCATTTGGCTGCTACGTACGTA 59.836 45.455 25.41 25.41 0.00 3.57
1059 1134 1.067425 TCATTTGGCTGCTACGTACGT 60.067 47.619 25.98 25.98 0.00 3.57
1060 1135 1.588404 CTCATTTGGCTGCTACGTACG 59.412 52.381 15.01 15.01 0.00 3.67
1257 1341 1.330521 CCACATGCGTTGGCTGTATAC 59.669 52.381 0.00 0.00 40.82 1.47
1259 1343 1.031571 CCCACATGCGTTGGCTGTAT 61.032 55.000 0.00 0.00 40.82 2.29
1264 1378 3.443045 CCTCCCACATGCGTTGGC 61.443 66.667 0.00 0.00 40.52 4.52
1266 1380 2.390599 CGACCTCCCACATGCGTTG 61.391 63.158 0.00 0.00 0.00 4.10
1294 1417 3.259314 ATGGCAGGACAGGGCACA 61.259 61.111 0.00 0.00 44.01 4.57
1295 1418 2.753043 CATGGCAGGACAGGGCAC 60.753 66.667 0.00 0.00 44.01 5.01
1296 1419 4.051167 CCATGGCAGGACAGGGCA 62.051 66.667 0.00 0.00 45.36 5.36
1308 1431 4.559063 CAGAGAGCCCGGCCATGG 62.559 72.222 7.63 7.63 0.00 3.66
1309 1432 2.826777 AAACAGAGAGCCCGGCCATG 62.827 60.000 5.55 2.48 0.00 3.66
1310 1433 1.271840 TAAACAGAGAGCCCGGCCAT 61.272 55.000 5.55 0.00 0.00 4.40
1311 1434 1.485294 TTAAACAGAGAGCCCGGCCA 61.485 55.000 5.55 0.00 0.00 5.36
1312 1435 0.322187 TTTAAACAGAGAGCCCGGCC 60.322 55.000 5.55 0.00 0.00 6.13
1313 1436 1.751437 ATTTAAACAGAGAGCCCGGC 58.249 50.000 0.00 0.00 0.00 6.13
1314 1437 4.010349 AGAAATTTAAACAGAGAGCCCGG 58.990 43.478 0.00 0.00 0.00 5.73
1315 1438 5.181245 TCAAGAAATTTAAACAGAGAGCCCG 59.819 40.000 0.00 0.00 0.00 6.13
1316 1439 6.207614 AGTCAAGAAATTTAAACAGAGAGCCC 59.792 38.462 0.00 0.00 0.00 5.19
1329 1456 4.851558 GCGCGTTAATCAGTCAAGAAATTT 59.148 37.500 8.43 0.00 0.00 1.82
1468 1597 0.252881 TGAAGGTCTCCCAGCCAGAT 60.253 55.000 0.00 0.00 0.00 2.90
1634 1769 1.609208 GCCATAATCCGCATCCTGTT 58.391 50.000 0.00 0.00 0.00 3.16
1655 1790 0.670162 TGCAAGAAGAGCCTGTTTGC 59.330 50.000 12.71 12.71 43.21 3.68
1775 2046 8.071854 TGAGACCTCCCTCCTTAAAGAAATATA 58.928 37.037 0.00 0.00 32.32 0.86
1776 2047 6.909158 TGAGACCTCCCTCCTTAAAGAAATAT 59.091 38.462 0.00 0.00 32.32 1.28
1777 2048 6.156429 GTGAGACCTCCCTCCTTAAAGAAATA 59.844 42.308 0.00 0.00 32.32 1.40
1778 2049 5.045505 GTGAGACCTCCCTCCTTAAAGAAAT 60.046 44.000 0.00 0.00 32.32 2.17
1779 2050 4.286291 GTGAGACCTCCCTCCTTAAAGAAA 59.714 45.833 0.00 0.00 32.32 2.52
1781 2052 3.077695 AGTGAGACCTCCCTCCTTAAAGA 59.922 47.826 0.00 0.00 32.32 2.52
1782 2053 3.445987 AGTGAGACCTCCCTCCTTAAAG 58.554 50.000 0.00 0.00 32.32 1.85
1783 2054 3.562108 AGTGAGACCTCCCTCCTTAAA 57.438 47.619 0.00 0.00 32.32 1.52
1786 2057 3.012959 TGATTAGTGAGACCTCCCTCCTT 59.987 47.826 0.00 0.00 32.32 3.36
1787 2058 2.587777 TGATTAGTGAGACCTCCCTCCT 59.412 50.000 0.00 0.00 32.32 3.69
1788 2059 2.696187 GTGATTAGTGAGACCTCCCTCC 59.304 54.545 0.00 0.00 32.32 4.30
1789 2060 3.637769 AGTGATTAGTGAGACCTCCCTC 58.362 50.000 0.00 0.00 0.00 4.30
1790 2061 3.767309 AGTGATTAGTGAGACCTCCCT 57.233 47.619 0.00 0.00 0.00 4.20
1792 2086 7.826918 ATAAGTAGTGATTAGTGAGACCTCC 57.173 40.000 0.00 0.00 0.00 4.30
1820 2114 5.659079 ACTTGGTTTCATTGGTTTCCACTTA 59.341 36.000 0.00 0.00 30.78 2.24
1823 2117 4.119136 CACTTGGTTTCATTGGTTTCCAC 58.881 43.478 0.00 0.00 30.78 4.02
1826 2120 6.593770 AGTTTTCACTTGGTTTCATTGGTTTC 59.406 34.615 0.00 0.00 0.00 2.78
1827 2121 6.472016 AGTTTTCACTTGGTTTCATTGGTTT 58.528 32.000 0.00 0.00 0.00 3.27
1828 2122 6.048732 AGTTTTCACTTGGTTTCATTGGTT 57.951 33.333 0.00 0.00 0.00 3.67
1829 2123 5.675684 AGTTTTCACTTGGTTTCATTGGT 57.324 34.783 0.00 0.00 0.00 3.67
1830 2124 6.568869 TGTAGTTTTCACTTGGTTTCATTGG 58.431 36.000 0.00 0.00 34.06 3.16
1831 2125 8.647143 AATGTAGTTTTCACTTGGTTTCATTG 57.353 30.769 0.00 0.00 34.06 2.82
1832 2126 9.313118 GAAATGTAGTTTTCACTTGGTTTCATT 57.687 29.630 0.00 0.00 35.98 2.57
1833 2127 8.474025 TGAAATGTAGTTTTCACTTGGTTTCAT 58.526 29.630 0.00 0.00 39.91 2.57
1834 2128 7.831753 TGAAATGTAGTTTTCACTTGGTTTCA 58.168 30.769 0.00 0.00 39.91 2.69
1884 2178 2.797792 CGTCAGCTCTCTGCCATACTTC 60.798 54.545 0.00 0.00 44.23 3.01
1900 2197 5.227908 ACTTACATGTTTGTAGGACGTCAG 58.772 41.667 18.91 3.06 39.43 3.51
1902 2199 6.535274 AAACTTACATGTTTGTAGGACGTC 57.465 37.500 7.13 7.13 39.43 4.34
1923 2305 9.769093 GCTCGAAGATTAGCACTAAATTTAAAA 57.231 29.630 0.00 0.00 38.63 1.52
1980 2362 7.221450 TGTGGGTGGATTAATAACTACTATGC 58.779 38.462 0.00 0.00 0.00 3.14
1984 2366 7.924541 TCTTTGTGGGTGGATTAATAACTACT 58.075 34.615 0.00 0.00 0.00 2.57
1985 2367 8.570068 TTCTTTGTGGGTGGATTAATAACTAC 57.430 34.615 0.00 0.00 0.00 2.73
1986 2368 9.184523 CATTCTTTGTGGGTGGATTAATAACTA 57.815 33.333 0.00 0.00 0.00 2.24
1987 2369 7.893302 TCATTCTTTGTGGGTGGATTAATAACT 59.107 33.333 0.00 0.00 0.00 2.24
2003 2385 2.489329 CTGGCGTTGGATCATTCTTTGT 59.511 45.455 0.00 0.00 0.00 2.83
2054 2460 8.850452 GCTGACTAAATGTTTAAGCAATTGTAC 58.150 33.333 7.40 0.00 33.18 2.90
2062 2469 5.030874 ACACGCTGACTAAATGTTTAAGC 57.969 39.130 0.00 0.00 0.00 3.09
2092 2508 1.515521 GAGTCCAGTGCCGGTTTTGG 61.516 60.000 1.90 8.65 0.00 3.28
2149 2575 8.135382 AGTGTTGGTGTACTAGTCAAATATCT 57.865 34.615 0.00 0.00 0.00 1.98
2171 2597 5.728471 TGGAAGAGAATGAGCTTTCTAGTG 58.272 41.667 0.57 0.00 36.10 2.74
2173 2599 8.366401 TCATATGGAAGAGAATGAGCTTTCTAG 58.634 37.037 2.13 0.00 36.10 2.43
2198 2634 6.500684 TCAATGGAATTTGACTGCTAGTTC 57.499 37.500 0.00 0.00 31.22 3.01
2495 2960 9.524106 CACATGCATGTTCAATAATGTCTTTAT 57.476 29.630 29.48 0.00 39.39 1.40
2496 2961 7.488792 GCACATGCATGTTCAATAATGTCTTTA 59.511 33.333 29.48 0.00 39.39 1.85
2497 2962 6.311935 GCACATGCATGTTCAATAATGTCTTT 59.688 34.615 29.48 0.00 39.39 2.52
2498 2963 5.808540 GCACATGCATGTTCAATAATGTCTT 59.191 36.000 29.48 0.00 39.39 3.01
2499 2964 5.345702 GCACATGCATGTTCAATAATGTCT 58.654 37.500 29.48 0.29 39.39 3.41
2500 2965 4.505191 GGCACATGCATGTTCAATAATGTC 59.495 41.667 29.48 13.58 44.36 3.06
2501 2966 4.435425 GGCACATGCATGTTCAATAATGT 58.565 39.130 29.48 2.68 44.36 2.71
2502 2967 3.805422 GGGCACATGCATGTTCAATAATG 59.195 43.478 29.48 16.32 44.36 1.90
2503 2968 3.451540 TGGGCACATGCATGTTCAATAAT 59.548 39.130 29.48 2.70 44.36 1.28
2504 2969 2.830321 TGGGCACATGCATGTTCAATAA 59.170 40.909 29.48 10.66 44.36 1.40
2505 2970 2.166050 GTGGGCACATGCATGTTCAATA 59.834 45.455 29.48 11.87 44.36 1.90
2506 2971 1.066716 GTGGGCACATGCATGTTCAAT 60.067 47.619 29.48 5.15 44.36 2.57
2507 2972 0.317799 GTGGGCACATGCATGTTCAA 59.682 50.000 29.48 15.35 44.36 2.69
2508 2973 0.540133 AGTGGGCACATGCATGTTCA 60.540 50.000 29.48 22.67 44.36 3.18
2509 2974 0.604578 AAGTGGGCACATGCATGTTC 59.395 50.000 29.48 24.33 44.36 3.18
2510 2975 0.319083 CAAGTGGGCACATGCATGTT 59.681 50.000 29.48 11.65 44.36 2.71
2511 2976 1.969085 CAAGTGGGCACATGCATGT 59.031 52.632 26.61 26.61 44.36 3.21
2512 2977 4.902308 CAAGTGGGCACATGCATG 57.098 55.556 25.09 25.09 44.36 4.06
2516 2981 0.892755 AATCAGCAAGTGGGCACATG 59.107 50.000 0.00 0.00 35.83 3.21
2517 2982 0.892755 CAATCAGCAAGTGGGCACAT 59.107 50.000 0.00 0.00 35.83 3.21
2518 2983 1.808531 GCAATCAGCAAGTGGGCACA 61.809 55.000 0.00 0.00 44.79 4.57
2519 2984 1.080298 GCAATCAGCAAGTGGGCAC 60.080 57.895 0.00 0.00 44.79 5.01
2520 2985 3.368822 GCAATCAGCAAGTGGGCA 58.631 55.556 0.00 0.00 44.79 5.36
2529 2994 8.519492 TTTGATTTAAAACAGTAGCAATCAGC 57.481 30.769 0.00 0.00 46.19 4.26
2543 3008 7.384115 TGTTCACCACGTTGTTTTGATTTAAAA 59.616 29.630 0.00 0.00 35.96 1.52
2544 3009 6.866770 TGTTCACCACGTTGTTTTGATTTAAA 59.133 30.769 0.00 0.00 0.00 1.52
2545 3010 6.387465 TGTTCACCACGTTGTTTTGATTTAA 58.613 32.000 0.00 0.00 0.00 1.52
2546 3011 5.950883 TGTTCACCACGTTGTTTTGATTTA 58.049 33.333 0.00 0.00 0.00 1.40
2547 3012 4.810790 TGTTCACCACGTTGTTTTGATTT 58.189 34.783 0.00 0.00 0.00 2.17
2548 3013 4.420168 CTGTTCACCACGTTGTTTTGATT 58.580 39.130 0.00 0.00 0.00 2.57
2549 3014 3.733684 GCTGTTCACCACGTTGTTTTGAT 60.734 43.478 0.00 0.00 0.00 2.57
2550 3015 2.414824 GCTGTTCACCACGTTGTTTTGA 60.415 45.455 0.00 0.00 0.00 2.69
2551 3016 1.917303 GCTGTTCACCACGTTGTTTTG 59.083 47.619 0.00 0.00 0.00 2.44
2552 3017 1.542030 TGCTGTTCACCACGTTGTTTT 59.458 42.857 0.00 0.00 0.00 2.43
2553 3018 1.135517 GTGCTGTTCACCACGTTGTTT 60.136 47.619 0.00 0.00 39.79 2.83
2554 3019 0.450184 GTGCTGTTCACCACGTTGTT 59.550 50.000 0.00 0.00 39.79 2.83
2555 3020 0.392461 AGTGCTGTTCACCACGTTGT 60.392 50.000 0.00 0.00 46.81 3.32
2556 3021 0.732571 AAGTGCTGTTCACCACGTTG 59.267 50.000 0.00 0.00 46.81 4.10
2557 3022 0.732571 CAAGTGCTGTTCACCACGTT 59.267 50.000 0.00 0.00 46.81 3.99
2558 3023 1.714899 GCAAGTGCTGTTCACCACGT 61.715 55.000 0.00 0.00 46.81 4.49
2559 3024 1.009675 GCAAGTGCTGTTCACCACG 60.010 57.895 0.00 0.00 46.81 4.94
2560 3025 0.029834 CTGCAAGTGCTGTTCACCAC 59.970 55.000 4.69 0.00 46.81 4.16
2561 3026 0.107263 TCTGCAAGTGCTGTTCACCA 60.107 50.000 4.69 0.00 46.81 4.17
2562 3027 1.242076 ATCTGCAAGTGCTGTTCACC 58.758 50.000 4.69 0.00 46.81 4.02
2563 3028 4.409570 CATAATCTGCAAGTGCTGTTCAC 58.590 43.478 4.69 0.00 45.98 3.18
2564 3029 4.690184 CATAATCTGCAAGTGCTGTTCA 57.310 40.909 4.69 0.00 42.66 3.18
2577 3042 7.916914 TCCACATCATGATAAGCATAATCTG 57.083 36.000 8.15 0.00 34.82 2.90
2584 3049 9.440773 GTCTTTATATCCACATCATGATAAGCA 57.559 33.333 8.15 0.00 0.00 3.91
2585 3050 9.440773 TGTCTTTATATCCACATCATGATAAGC 57.559 33.333 8.15 3.07 0.00 3.09
2603 3068 9.524106 CACATGCATGTTCAATAATGTCTTTAT 57.476 29.630 29.48 0.00 39.39 1.40
2604 3069 7.488792 GCACATGCATGTTCAATAATGTCTTTA 59.511 33.333 29.48 0.00 39.39 1.85
2605 3070 6.311935 GCACATGCATGTTCAATAATGTCTTT 59.688 34.615 29.48 0.00 39.39 2.52
2606 3071 5.808540 GCACATGCATGTTCAATAATGTCTT 59.191 36.000 29.48 0.00 39.39 3.01
2607 3072 5.345702 GCACATGCATGTTCAATAATGTCT 58.654 37.500 29.48 0.29 39.39 3.41
2608 3073 4.505191 GGCACATGCATGTTCAATAATGTC 59.495 41.667 29.48 13.58 44.36 3.06
2609 3074 4.435425 GGCACATGCATGTTCAATAATGT 58.565 39.130 29.48 2.68 44.36 2.71
2610 3075 3.805422 GGGCACATGCATGTTCAATAATG 59.195 43.478 29.48 16.32 44.36 1.90
2611 3076 3.451540 TGGGCACATGCATGTTCAATAAT 59.548 39.130 29.48 2.70 44.36 1.28
2612 3077 2.830321 TGGGCACATGCATGTTCAATAA 59.170 40.909 29.48 10.66 44.36 1.40
2613 3078 2.166050 GTGGGCACATGCATGTTCAATA 59.834 45.455 29.48 11.87 44.36 1.90
2614 3079 1.066716 GTGGGCACATGCATGTTCAAT 60.067 47.619 29.48 5.15 44.36 2.57
2615 3080 0.317799 GTGGGCACATGCATGTTCAA 59.682 50.000 29.48 15.35 44.36 2.69
2616 3081 0.540133 AGTGGGCACATGCATGTTCA 60.540 50.000 29.48 22.67 44.36 3.18
2617 3082 0.604578 AAGTGGGCACATGCATGTTC 59.395 50.000 29.48 24.33 44.36 3.18
2618 3083 0.319083 CAAGTGGGCACATGCATGTT 59.681 50.000 29.48 11.65 44.36 2.71
2619 3084 1.969085 CAAGTGGGCACATGCATGT 59.031 52.632 26.61 26.61 44.36 3.21
2620 3085 4.902308 CAAGTGGGCACATGCATG 57.098 55.556 25.09 25.09 44.36 4.06
2624 3089 0.892755 AATCAGCAAGTGGGCACATG 59.107 50.000 0.00 0.00 35.83 3.21
2625 3090 0.892755 CAATCAGCAAGTGGGCACAT 59.107 50.000 0.00 0.00 35.83 3.21
2626 3091 1.808531 GCAATCAGCAAGTGGGCACA 61.809 55.000 0.00 0.00 44.79 4.57
2627 3092 1.080298 GCAATCAGCAAGTGGGCAC 60.080 57.895 0.00 0.00 44.79 5.01
2628 3093 3.368822 GCAATCAGCAAGTGGGCA 58.631 55.556 0.00 0.00 44.79 5.36
2637 3102 8.519492 TTTGATTTAAAACAGTAGCAATCAGC 57.481 30.769 0.00 0.00 46.19 4.26
2651 3116 7.384115 TGTTCACCACGTTGTTTTGATTTAAAA 59.616 29.630 0.00 0.00 35.96 1.52
2652 3117 6.866770 TGTTCACCACGTTGTTTTGATTTAAA 59.133 30.769 0.00 0.00 0.00 1.52
2653 3118 6.387465 TGTTCACCACGTTGTTTTGATTTAA 58.613 32.000 0.00 0.00 0.00 1.52
2654 3119 5.950883 TGTTCACCACGTTGTTTTGATTTA 58.049 33.333 0.00 0.00 0.00 1.40
2655 3120 4.810790 TGTTCACCACGTTGTTTTGATTT 58.189 34.783 0.00 0.00 0.00 2.17
2656 3121 4.420168 CTGTTCACCACGTTGTTTTGATT 58.580 39.130 0.00 0.00 0.00 2.57
2657 3122 3.733684 GCTGTTCACCACGTTGTTTTGAT 60.734 43.478 0.00 0.00 0.00 2.57
2658 3123 2.414824 GCTGTTCACCACGTTGTTTTGA 60.415 45.455 0.00 0.00 0.00 2.69
2659 3124 1.917303 GCTGTTCACCACGTTGTTTTG 59.083 47.619 0.00 0.00 0.00 2.44
2660 3125 1.542030 TGCTGTTCACCACGTTGTTTT 59.458 42.857 0.00 0.00 0.00 2.43
2661 3126 1.135517 GTGCTGTTCACCACGTTGTTT 60.136 47.619 0.00 0.00 39.79 2.83
2662 3127 0.450184 GTGCTGTTCACCACGTTGTT 59.550 50.000 0.00 0.00 39.79 2.83
2663 3128 0.392461 AGTGCTGTTCACCACGTTGT 60.392 50.000 0.00 0.00 46.81 3.32
2664 3129 0.732571 AAGTGCTGTTCACCACGTTG 59.267 50.000 0.00 0.00 46.81 4.10
2665 3130 0.732571 CAAGTGCTGTTCACCACGTT 59.267 50.000 0.00 0.00 46.81 3.99
2666 3131 1.714899 GCAAGTGCTGTTCACCACGT 61.715 55.000 0.00 0.00 46.81 4.49
2667 3132 1.009675 GCAAGTGCTGTTCACCACG 60.010 57.895 0.00 0.00 46.81 4.94
2668 3133 0.029834 CTGCAAGTGCTGTTCACCAC 59.970 55.000 4.69 0.00 46.81 4.16
2669 3134 0.107263 TCTGCAAGTGCTGTTCACCA 60.107 50.000 4.69 0.00 46.81 4.17
2670 3135 1.242076 ATCTGCAAGTGCTGTTCACC 58.758 50.000 4.69 0.00 46.81 4.02
2671 3136 4.409570 CATAATCTGCAAGTGCTGTTCAC 58.590 43.478 4.69 0.00 45.98 3.18
2672 3137 4.690184 CATAATCTGCAAGTGCTGTTCA 57.310 40.909 4.69 0.00 42.66 3.18
2685 3150 7.916914 TCCACATCATGATAAGCATAATCTG 57.083 36.000 8.15 0.00 34.82 2.90
2689 3154 9.387257 GTGATATCCACATCATGATAAGCATAA 57.613 33.333 8.15 0.00 45.03 1.90
2690 3155 8.953368 GTGATATCCACATCATGATAAGCATA 57.047 34.615 8.15 0.49 45.03 3.14
2691 3156 7.860918 GTGATATCCACATCATGATAAGCAT 57.139 36.000 8.15 0.00 45.03 3.79
2705 3170 0.034059 CCGAGGGCAGTGATATCCAC 59.966 60.000 0.00 0.00 46.03 4.02
2706 3171 0.398522 ACCGAGGGCAGTGATATCCA 60.399 55.000 0.00 0.00 0.00 3.41
2707 3172 0.034059 CACCGAGGGCAGTGATATCC 59.966 60.000 0.00 0.00 36.01 2.59
2708 3173 0.034059 CCACCGAGGGCAGTGATATC 59.966 60.000 0.00 0.00 36.01 1.63
2709 3174 0.691078 ACCACCGAGGGCAGTGATAT 60.691 55.000 0.00 0.00 43.89 1.63
3034 3848 6.337356 CCAAACATACAAAGTTCCACAAAGT 58.663 36.000 0.00 0.00 0.00 2.66
3185 4011 1.439679 GTTTGAAGCGAACCTCCGAT 58.560 50.000 0.00 0.00 0.00 4.18
3239 4065 2.892215 TGCCAAGATCAAACATGAAGCA 59.108 40.909 0.00 0.00 0.00 3.91
3315 4278 3.007182 CCCTGTCCATGCAGAAAAATTGT 59.993 43.478 2.22 0.00 38.70 2.71
3440 4403 1.298157 TTGCGCGATGTTAGCTGCTT 61.298 50.000 12.10 0.00 36.00 3.91
3441 4404 1.298157 TTTGCGCGATGTTAGCTGCT 61.298 50.000 12.10 7.57 36.00 4.24
3444 4407 1.794222 GGTTTGCGCGATGTTAGCT 59.206 52.632 12.10 0.00 0.00 3.32
3489 4452 3.467226 GGGCTGGCAGCGTACCTA 61.467 66.667 31.22 0.00 43.62 3.08
3526 4489 2.250939 CCAGCGGCTCGTTCAACAA 61.251 57.895 0.00 0.00 0.00 2.83
3559 4522 2.367567 AGTACGTTTTCAGGCTCTCCAA 59.632 45.455 0.00 0.00 33.74 3.53
3639 4602 1.613928 TGGGGATGACAGCCGGTTA 60.614 57.895 1.90 0.00 0.00 2.85
3789 4754 3.082548 AGTACTGAGAGCGCTTGAGTAA 58.917 45.455 13.26 0.00 0.00 2.24
3807 4772 1.270094 CCGTTCTGCTTGGTGACAGTA 60.270 52.381 0.00 0.00 44.54 2.74
3816 4781 0.318441 TGAGAGGACCGTTCTGCTTG 59.682 55.000 0.00 0.00 0.00 4.01
3843 4808 8.618677 GCACCAAAATATTAGTTAGACTTACCC 58.381 37.037 0.00 0.00 0.00 3.69
3870 4835 7.820578 AAAATCCATGCTCCAAAATCAAAAA 57.179 28.000 0.00 0.00 0.00 1.94
3876 4841 9.299465 ACAAAAATAAAATCCATGCTCCAAAAT 57.701 25.926 0.00 0.00 0.00 1.82
3956 4934 1.185315 CCCATTCGCCTGTGGAAAAT 58.815 50.000 0.00 0.00 37.72 1.82
4179 5157 6.403866 TTGCTCCACAAACTTATTTCACAT 57.596 33.333 0.00 0.00 34.56 3.21
4181 5159 6.446318 TGATTGCTCCACAAACTTATTTCAC 58.554 36.000 0.00 0.00 42.86 3.18
4190 5168 7.486647 AGATATGAATTGATTGCTCCACAAAC 58.513 34.615 0.00 0.00 42.86 2.93
4259 5238 4.655963 AGAAGACATGTGTAGCAAATGGT 58.344 39.130 1.15 0.00 33.67 3.55
4316 5295 6.032956 TCGGCACTCTTACTTATCAAAAGA 57.967 37.500 0.00 0.00 0.00 2.52
4336 5315 2.434359 GCTCCTCGTTGGGTTCGG 60.434 66.667 0.00 0.00 36.20 4.30
4369 5348 5.932303 CAGAGAATACCTTTCTGAAAACCGA 59.068 40.000 4.18 0.00 40.54 4.69
4380 5359 3.755378 CAGTGCTTGCAGAGAATACCTTT 59.245 43.478 0.00 0.00 0.00 3.11
4503 5482 0.868406 GTCCAGACTTGTCCTTTGCG 59.132 55.000 0.00 0.00 0.00 4.85
4544 5523 2.362369 CCATGTGTCCTCGGGAGCT 61.362 63.158 0.00 0.00 29.39 4.09
4631 5610 1.228429 CAAACACCGGTCCACCCAT 60.228 57.895 2.59 0.00 0.00 4.00
4646 5625 2.383855 CAAGGAAGGACAACACCCAAA 58.616 47.619 0.00 0.00 0.00 3.28
4770 5749 2.235155 TGCATTGCTTCGTAAGGGACTA 59.765 45.455 10.49 0.00 38.49 2.59
4773 5752 2.418368 ATGCATTGCTTCGTAAGGGA 57.582 45.000 10.49 0.00 38.47 4.20
4808 5787 1.065126 GGGTTGCTAGAGTGGCAGAAT 60.065 52.381 0.00 0.00 40.90 2.40
4814 5793 2.437281 AGATGATGGGTTGCTAGAGTGG 59.563 50.000 0.00 0.00 0.00 4.00
4837 5816 4.011698 GGAAGGCGTTGGGAAGTAATAAA 58.988 43.478 0.00 0.00 0.00 1.40
4901 5880 6.120905 GTCTCTCCTCTAGTGGTGTTATGTA 58.879 44.000 10.56 0.00 0.00 2.29
5010 5989 8.245491 TGAATATGCTTTGTGAGTAGTTACGTA 58.755 33.333 0.00 0.00 0.00 3.57
5156 6135 5.943416 TCTTTGTCTCAAAACCTCAGTTTGA 59.057 36.000 0.20 0.20 45.54 2.69
5160 6139 4.752101 CGATCTTTGTCTCAAAACCTCAGT 59.248 41.667 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.