Multiple sequence alignment - TraesCS5B01G064000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G064000 chr5B 100.000 4764 0 0 1 4764 72011249 72006486 0.000000e+00 8798.0
1 TraesCS5B01G064000 chr5B 83.630 1686 212 36 2417 4055 71674866 71673198 0.000000e+00 1526.0
2 TraesCS5B01G064000 chr5B 83.450 858 113 12 2951 3780 72018289 72019145 0.000000e+00 771.0
3 TraesCS5B01G064000 chr5B 80.940 745 96 34 894 1620 72015939 72016655 9.010000e-152 547.0
4 TraesCS5B01G064000 chr5B 85.859 297 38 4 4006 4300 13347816 13347522 3.580000e-81 313.0
5 TraesCS5B01G064000 chr5B 92.040 201 16 0 2553 2753 72018009 72018209 2.810000e-72 283.0
6 TraesCS5B01G064000 chr5B 88.688 221 25 0 1404 1624 71683765 71683545 2.180000e-68 270.0
7 TraesCS5B01G064000 chr5B 88.393 224 24 1 3560 3781 71672383 71672160 7.860000e-68 268.0
8 TraesCS5B01G064000 chr5B 83.824 272 30 10 1834 2100 72017197 72017459 3.680000e-61 246.0
9 TraesCS5B01G064000 chr5B 88.742 151 13 1 1884 2030 71675287 71675137 1.050000e-41 182.0
10 TraesCS5B01G064000 chr5A 93.729 2743 109 17 2044 4764 47651192 47653893 0.000000e+00 4054.0
11 TraesCS5B01G064000 chr5A 88.290 1281 83 25 709 1958 47649934 47651178 0.000000e+00 1472.0
12 TraesCS5B01G064000 chr5A 84.935 843 101 12 2953 3770 47645478 47644637 0.000000e+00 830.0
13 TraesCS5B01G064000 chr5A 83.958 667 76 18 991 1639 47647346 47646693 1.130000e-170 610.0
14 TraesCS5B01G064000 chr5A 86.395 294 36 4 4007 4297 592689220 592689512 7.690000e-83 318.0
15 TraesCS5B01G064000 chr5A 91.469 211 18 0 2552 2762 47645766 47645556 1.680000e-74 291.0
16 TraesCS5B01G064000 chr5A 77.495 551 78 32 1834 2355 47646547 47646014 6.030000e-74 289.0
17 TraesCS5B01G064000 chr5D 95.140 2387 83 7 2397 4764 59245668 59248040 0.000000e+00 3735.0
18 TraesCS5B01G064000 chr5D 93.050 705 34 5 1672 2371 59244990 59245684 0.000000e+00 1016.0
19 TraesCS5B01G064000 chr5D 84.112 856 113 10 2960 3792 59223737 59222882 0.000000e+00 806.0
20 TraesCS5B01G064000 chr5D 82.670 779 99 22 3307 4055 59295741 59294969 0.000000e+00 658.0
21 TraesCS5B01G064000 chr5D 80.869 852 120 28 787 1620 59226013 59225187 8.700000e-177 630.0
22 TraesCS5B01G064000 chr5D 91.610 441 23 6 768 1207 59244020 59244447 8.820000e-167 597.0
23 TraesCS5B01G064000 chr5D 94.652 374 19 1 1251 1624 59244445 59244817 3.200000e-161 579.0
24 TraesCS5B01G064000 chr5D 83.051 590 65 14 1044 1624 59358775 59358212 1.980000e-138 503.0
25 TraesCS5B01G064000 chr5D 92.920 339 18 3 1245 1577 59363413 59363075 5.540000e-134 488.0
26 TraesCS5B01G064000 chr5D 83.182 440 54 12 3569 4006 59294145 59293724 7.480000e-103 385.0
27 TraesCS5B01G064000 chr5D 86.486 333 37 6 309 639 445208441 445208767 4.530000e-95 359.0
28 TraesCS5B01G064000 chr5D 92.381 210 16 0 2553 2762 59224029 59223820 2.790000e-77 300.0
29 TraesCS5B01G064000 chr5D 75.656 686 99 42 1706 2356 59224743 59224091 3.630000e-71 279.0
30 TraesCS5B01G064000 chr5D 90.551 127 6 2 712 838 59363883 59363763 3.810000e-36 163.0
31 TraesCS5B01G064000 chr5D 90.385 104 9 1 888 991 59358887 59358785 8.320000e-28 135.0
32 TraesCS5B01G064000 chr5D 88.000 100 9 3 1 100 398642847 398642751 1.080000e-21 115.0
33 TraesCS5B01G064000 chr5D 92.593 54 4 0 888 941 59363659 59363606 1.420000e-10 78.7
34 TraesCS5B01G064000 chr2D 89.401 1453 119 14 2425 3851 41478882 41477439 0.000000e+00 1797.0
35 TraesCS5B01G064000 chr2D 88.859 736 57 10 902 1625 41781640 41780918 0.000000e+00 881.0
36 TraesCS5B01G064000 chr2D 89.263 475 47 4 3855 4325 41468773 41468299 4.110000e-165 592.0
37 TraesCS5B01G064000 chr2D 87.798 336 32 6 309 639 569260850 569261181 7.480000e-103 385.0
38 TraesCS5B01G064000 chr2D 86.866 335 35 7 311 640 507459854 507459524 2.710000e-97 366.0
39 TraesCS5B01G064000 chr2D 84.314 102 5 4 778 879 41798549 41798459 6.570000e-14 89.8
40 TraesCS5B01G064000 chr2D 97.500 40 1 0 656 695 41800169 41800130 8.550000e-08 69.4
41 TraesCS5B01G064000 chr1A 87.390 341 32 7 311 641 146950045 146950384 9.670000e-102 381.0
42 TraesCS5B01G064000 chr1A 84.659 176 25 2 1301 1475 6320269 6320443 1.760000e-39 174.0
43 TraesCS5B01G064000 chr1A 87.838 74 6 3 4192 4263 312159646 312159718 3.060000e-12 84.2
44 TraesCS5B01G064000 chr6D 87.427 342 27 10 311 640 388554205 388553868 3.480000e-101 379.0
45 TraesCS5B01G064000 chr6D 85.185 297 36 7 4006 4295 472683988 472683693 1.000000e-76 298.0
46 TraesCS5B01G064000 chr3D 86.510 341 35 6 307 640 323247416 323247080 9.740000e-97 364.0
47 TraesCS5B01G064000 chr7D 86.176 340 37 7 311 640 121667423 121667084 4.530000e-95 359.0
48 TraesCS5B01G064000 chr7D 84.138 290 42 4 4006 4292 424655519 424655231 1.310000e-70 278.0
49 TraesCS5B01G064000 chr7B 87.421 318 30 6 332 640 49609214 49608898 1.630000e-94 357.0
50 TraesCS5B01G064000 chr7B 84.667 300 42 4 4000 4296 1560413 1560711 3.600000e-76 296.0
51 TraesCS5B01G064000 chr7B 84.880 291 39 5 4008 4295 405652586 405652874 6.030000e-74 289.0
52 TraesCS5B01G064000 chr1D 85.154 357 38 10 295 640 64114980 64115332 7.590000e-93 351.0
53 TraesCS5B01G064000 chr1D 83.276 293 46 3 4006 4296 279106917 279106626 2.830000e-67 267.0
54 TraesCS5B01G064000 chr1D 88.021 192 21 2 4008 4198 5353487 5353677 4.800000e-55 226.0
55 TraesCS5B01G064000 chr1D 84.659 176 25 2 1301 1475 4823669 4823843 1.760000e-39 174.0
56 TraesCS5B01G064000 chr1D 82.126 207 33 4 3559 3762 10153830 10153625 1.760000e-39 174.0
57 TraesCS5B01G064000 chr1D 81.281 203 34 4 3563 3762 10070106 10069905 1.370000e-35 161.0
58 TraesCS5B01G064000 chr1D 85.965 114 16 0 1072 1185 90148702 90148815 6.470000e-24 122.0
59 TraesCS5B01G064000 chr4B 87.814 279 29 5 4008 4284 374729995 374729720 5.950000e-84 322.0
60 TraesCS5B01G064000 chr4B 83.959 293 37 7 4007 4296 429084801 429085086 6.080000e-69 272.0
61 TraesCS5B01G064000 chr4B 78.767 292 52 7 4007 4296 39756224 39756507 2.260000e-43 187.0
62 TraesCS5B01G064000 chr4B 81.579 190 29 5 4006 4191 643652346 643652533 8.260000e-33 152.0
63 TraesCS5B01G064000 chr4B 88.776 98 8 3 1 97 661677102 661677007 3.010000e-22 117.0
64 TraesCS5B01G064000 chr6B 87.273 275 33 2 4010 4282 465696550 465696276 3.580000e-81 313.0
65 TraesCS5B01G064000 chr6B 90.323 93 7 2 1 93 60610434 60610344 2.330000e-23 121.0
66 TraesCS5B01G064000 chr4D 87.097 279 32 4 4008 4284 301022202 301021926 3.580000e-81 313.0
67 TraesCS5B01G064000 chr4A 85.714 301 38 5 4000 4296 117703103 117703402 3.580000e-81 313.0
68 TraesCS5B01G064000 chr4A 93.671 79 4 1 1 79 671270198 671270275 3.010000e-22 117.0
69 TraesCS5B01G064000 chr3A 85.467 289 38 4 4010 4295 449125449 449125162 1.000000e-76 298.0
70 TraesCS5B01G064000 chr6A 83.333 276 40 5 4010 4284 548417495 548417765 2.850000e-62 250.0
71 TraesCS5B01G064000 chr1B 79.803 203 37 4 3563 3762 14994175 14993974 1.380000e-30 145.0
72 TraesCS5B01G064000 chr1B 79.888 179 34 2 3577 3754 15096333 15096510 3.870000e-26 130.0
73 TraesCS5B01G064000 chr1B 88.776 98 9 2 1 98 615681684 615681779 8.380000e-23 119.0
74 TraesCS5B01G064000 chr3B 89.000 100 8 3 1 100 288291212 288291308 2.330000e-23 121.0
75 TraesCS5B01G064000 chr2A 89.000 100 8 3 1 99 426052332 426052429 2.330000e-23 121.0
76 TraesCS5B01G064000 chrUn 88.000 100 9 3 1 99 365681270 365681173 1.080000e-21 115.0
77 TraesCS5B01G064000 chrUn 88.000 100 9 3 1 99 366999736 366999833 1.080000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G064000 chr5B 72006486 72011249 4763 True 8798.000000 8798 100.000000 1 4764 1 chr5B.!!$R3 4763
1 TraesCS5B01G064000 chr5B 71672160 71675287 3127 True 658.666667 1526 86.921667 1884 4055 3 chr5B.!!$R4 2171
2 TraesCS5B01G064000 chr5B 72015939 72019145 3206 False 461.750000 771 85.063500 894 3780 4 chr5B.!!$F1 2886
3 TraesCS5B01G064000 chr5A 47649934 47653893 3959 False 2763.000000 4054 91.009500 709 4764 2 chr5A.!!$F2 4055
4 TraesCS5B01G064000 chr5A 47644637 47647346 2709 True 505.000000 830 84.464250 991 3770 4 chr5A.!!$R1 2779
5 TraesCS5B01G064000 chr5D 59244020 59248040 4020 False 1481.750000 3735 93.613000 768 4764 4 chr5D.!!$F2 3996
6 TraesCS5B01G064000 chr5D 59293724 59295741 2017 True 521.500000 658 82.926000 3307 4055 2 chr5D.!!$R3 748
7 TraesCS5B01G064000 chr5D 59222882 59226013 3131 True 503.750000 806 83.254500 787 3792 4 chr5D.!!$R2 3005
8 TraesCS5B01G064000 chr5D 59358212 59358887 675 True 319.000000 503 86.718000 888 1624 2 chr5D.!!$R4 736
9 TraesCS5B01G064000 chr5D 59363075 59363883 808 True 243.233333 488 92.021333 712 1577 3 chr5D.!!$R5 865
10 TraesCS5B01G064000 chr2D 41477439 41478882 1443 True 1797.000000 1797 89.401000 2425 3851 1 chr2D.!!$R2 1426
11 TraesCS5B01G064000 chr2D 41780918 41781640 722 True 881.000000 881 88.859000 902 1625 1 chr2D.!!$R3 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 545 0.179129 GGGCCTCACGCATCAAATTG 60.179 55.0 0.84 0.0 40.31 2.32 F
916 985 0.246635 ATAAGCGAGCAGAACACGGT 59.753 50.0 0.00 0.0 45.03 4.83 F
2692 3917 0.178926 TAACGACCCCAGACCTCCAA 60.179 55.0 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 2504 2.158957 TGCGCTAGTCAAAATCCCTAGG 60.159 50.000 9.73 0.06 30.99 3.02 R
2724 3949 1.551883 GCCCATTTGAATGCCTTGTCT 59.448 47.619 0.00 0.00 35.08 3.41 R
4137 6746 0.037017 CCCCAATGGTCCAACGTACA 59.963 55.000 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.496524 AAAAAGCTTTTTCATTCGAGTTCG 57.503 33.333 27.51 0.00 35.61 3.95
47 48 4.813296 AAGCTTTTTCATTCGAGTTCGT 57.187 36.364 0.00 0.00 40.80 3.85
48 49 5.917541 AAGCTTTTTCATTCGAGTTCGTA 57.082 34.783 0.00 0.00 40.80 3.43
49 50 6.481954 AAGCTTTTTCATTCGAGTTCGTAT 57.518 33.333 0.00 0.00 40.80 3.06
50 51 5.858475 AGCTTTTTCATTCGAGTTCGTATG 58.142 37.500 12.95 12.95 44.75 2.39
51 52 4.492294 GCTTTTTCATTCGAGTTCGTATGC 59.508 41.667 13.96 1.23 43.64 3.14
52 53 5.599359 TTTTTCATTCGAGTTCGTATGCA 57.401 34.783 13.96 3.46 43.64 3.96
53 54 5.599359 TTTTCATTCGAGTTCGTATGCAA 57.401 34.783 13.96 8.59 43.64 4.08
54 55 5.599359 TTTCATTCGAGTTCGTATGCAAA 57.401 34.783 13.96 12.24 43.64 3.68
55 56 5.599359 TTCATTCGAGTTCGTATGCAAAA 57.401 34.783 13.96 3.88 43.64 2.44
56 57 5.203358 TCATTCGAGTTCGTATGCAAAAG 57.797 39.130 13.96 0.00 43.64 2.27
57 58 4.688879 TCATTCGAGTTCGTATGCAAAAGT 59.311 37.500 13.96 0.00 43.64 2.66
58 59 5.178623 TCATTCGAGTTCGTATGCAAAAGTT 59.821 36.000 13.96 0.00 43.64 2.66
59 60 6.366604 TCATTCGAGTTCGTATGCAAAAGTTA 59.633 34.615 13.96 0.00 43.64 2.24
60 61 6.715344 TTCGAGTTCGTATGCAAAAGTTAT 57.285 33.333 0.00 0.00 40.80 1.89
61 62 6.089920 TCGAGTTCGTATGCAAAAGTTATG 57.910 37.500 0.00 0.00 40.80 1.90
62 63 4.723862 CGAGTTCGTATGCAAAAGTTATGC 59.276 41.667 0.00 0.00 38.20 3.14
63 64 4.981794 AGTTCGTATGCAAAAGTTATGCC 58.018 39.130 0.00 0.00 43.16 4.40
64 65 4.102649 GTTCGTATGCAAAAGTTATGCCC 58.897 43.478 0.00 0.00 43.16 5.36
65 66 3.348119 TCGTATGCAAAAGTTATGCCCA 58.652 40.909 0.00 0.00 43.16 5.36
66 67 3.951037 TCGTATGCAAAAGTTATGCCCAT 59.049 39.130 0.00 0.00 43.16 4.00
67 68 4.400884 TCGTATGCAAAAGTTATGCCCATT 59.599 37.500 0.00 0.00 43.16 3.16
68 69 5.105554 TCGTATGCAAAAGTTATGCCCATTT 60.106 36.000 0.00 0.00 43.16 2.32
69 70 5.231991 CGTATGCAAAAGTTATGCCCATTTC 59.768 40.000 0.00 0.00 43.16 2.17
70 71 4.613925 TGCAAAAGTTATGCCCATTTCA 57.386 36.364 0.00 0.00 43.16 2.69
71 72 4.965814 TGCAAAAGTTATGCCCATTTCAA 58.034 34.783 0.00 0.00 43.16 2.69
72 73 5.371526 TGCAAAAGTTATGCCCATTTCAAA 58.628 33.333 0.00 0.00 43.16 2.69
73 74 5.238214 TGCAAAAGTTATGCCCATTTCAAAC 59.762 36.000 0.00 0.00 43.16 2.93
74 75 5.238214 GCAAAAGTTATGCCCATTTCAAACA 59.762 36.000 0.00 0.00 37.85 2.83
75 76 6.238593 GCAAAAGTTATGCCCATTTCAAACAA 60.239 34.615 0.00 0.00 37.85 2.83
76 77 7.521910 GCAAAAGTTATGCCCATTTCAAACAAT 60.522 33.333 0.00 0.00 37.85 2.71
77 78 8.351461 CAAAAGTTATGCCCATTTCAAACAATT 58.649 29.630 0.00 0.00 0.00 2.32
78 79 8.462589 AAAGTTATGCCCATTTCAAACAATTT 57.537 26.923 0.00 0.00 0.00 1.82
79 80 8.462589 AAGTTATGCCCATTTCAAACAATTTT 57.537 26.923 0.00 0.00 0.00 1.82
80 81 8.462589 AGTTATGCCCATTTCAAACAATTTTT 57.537 26.923 0.00 0.00 0.00 1.94
106 107 9.587772 TTGAGAACATTTTTAAAAATCCGAACA 57.412 25.926 20.71 15.37 36.52 3.18
107 108 9.243637 TGAGAACATTTTTAAAAATCCGAACAG 57.756 29.630 20.71 11.75 36.52 3.16
108 109 9.458374 GAGAACATTTTTAAAAATCCGAACAGA 57.542 29.630 20.71 0.00 36.52 3.41
109 110 9.981114 AGAACATTTTTAAAAATCCGAACAGAT 57.019 25.926 20.71 5.54 36.52 2.90
222 223 7.977789 AAAAAGGAAAGAAACTGAAAAAGCA 57.022 28.000 0.00 0.00 0.00 3.91
223 224 7.977789 AAAAGGAAAGAAACTGAAAAAGCAA 57.022 28.000 0.00 0.00 0.00 3.91
224 225 7.977789 AAAGGAAAGAAACTGAAAAAGCAAA 57.022 28.000 0.00 0.00 0.00 3.68
225 226 7.977789 AAGGAAAGAAACTGAAAAAGCAAAA 57.022 28.000 0.00 0.00 0.00 2.44
226 227 7.977789 AGGAAAGAAACTGAAAAAGCAAAAA 57.022 28.000 0.00 0.00 0.00 1.94
302 303 9.541143 AAAATTAGGAAAATCGAGAAAAGCAAA 57.459 25.926 0.00 0.00 0.00 3.68
303 304 9.541143 AAATTAGGAAAATCGAGAAAAGCAAAA 57.459 25.926 0.00 0.00 0.00 2.44
304 305 9.541143 AATTAGGAAAATCGAGAAAAGCAAAAA 57.459 25.926 0.00 0.00 0.00 1.94
305 306 8.574196 TTAGGAAAATCGAGAAAAGCAAAAAG 57.426 30.769 0.00 0.00 0.00 2.27
306 307 6.805713 AGGAAAATCGAGAAAAGCAAAAAGA 58.194 32.000 0.00 0.00 0.00 2.52
307 308 6.920210 AGGAAAATCGAGAAAAGCAAAAAGAG 59.080 34.615 0.00 0.00 0.00 2.85
308 309 6.918022 GGAAAATCGAGAAAAGCAAAAAGAGA 59.082 34.615 0.00 0.00 0.00 3.10
309 310 7.435192 GGAAAATCGAGAAAAGCAAAAAGAGAA 59.565 33.333 0.00 0.00 0.00 2.87
310 311 8.702163 AAAATCGAGAAAAGCAAAAAGAGAAA 57.298 26.923 0.00 0.00 0.00 2.52
311 312 8.702163 AAATCGAGAAAAGCAAAAAGAGAAAA 57.298 26.923 0.00 0.00 0.00 2.29
312 313 8.702163 AATCGAGAAAAGCAAAAAGAGAAAAA 57.298 26.923 0.00 0.00 0.00 1.94
357 358 7.861176 TTTTTGTACGGTAGAAATTTGATGC 57.139 32.000 10.76 0.00 0.00 3.91
358 359 4.850859 TGTACGGTAGAAATTTGATGCG 57.149 40.909 0.00 0.00 0.00 4.73
359 360 4.247258 TGTACGGTAGAAATTTGATGCGT 58.753 39.130 0.00 0.00 0.00 5.24
360 361 3.740044 ACGGTAGAAATTTGATGCGTG 57.260 42.857 0.00 0.00 0.00 5.34
361 362 3.331150 ACGGTAGAAATTTGATGCGTGA 58.669 40.909 0.00 0.00 0.00 4.35
362 363 3.370978 ACGGTAGAAATTTGATGCGTGAG 59.629 43.478 0.00 0.00 0.00 3.51
363 364 3.242413 CGGTAGAAATTTGATGCGTGAGG 60.242 47.826 0.00 0.00 0.00 3.86
364 365 3.689649 GGTAGAAATTTGATGCGTGAGGT 59.310 43.478 0.00 0.00 0.00 3.85
365 366 4.201822 GGTAGAAATTTGATGCGTGAGGTC 60.202 45.833 0.00 0.00 0.00 3.85
366 367 2.416547 AGAAATTTGATGCGTGAGGTCG 59.583 45.455 0.00 0.00 0.00 4.79
367 368 1.086696 AATTTGATGCGTGAGGTCGG 58.913 50.000 0.00 0.00 0.00 4.79
368 369 1.369091 ATTTGATGCGTGAGGTCGGC 61.369 55.000 0.00 0.00 0.00 5.54
369 370 2.449031 TTTGATGCGTGAGGTCGGCT 62.449 55.000 0.00 0.00 0.00 5.52
370 371 2.125512 GATGCGTGAGGTCGGCTT 60.126 61.111 0.00 0.00 0.00 4.35
371 372 2.125512 ATGCGTGAGGTCGGCTTC 60.126 61.111 0.00 0.00 0.00 3.86
372 373 2.835701 GATGCGTGAGGTCGGCTTCA 62.836 60.000 0.00 0.00 0.00 3.02
373 374 2.357034 GCGTGAGGTCGGCTTCAA 60.357 61.111 2.36 0.00 32.39 2.69
374 375 1.741770 GCGTGAGGTCGGCTTCAAT 60.742 57.895 2.36 0.00 32.39 2.57
375 376 1.298859 GCGTGAGGTCGGCTTCAATT 61.299 55.000 2.36 0.00 32.39 2.32
376 377 1.156736 CGTGAGGTCGGCTTCAATTT 58.843 50.000 2.36 0.00 32.39 1.82
377 378 1.535462 CGTGAGGTCGGCTTCAATTTT 59.465 47.619 2.36 0.00 32.39 1.82
378 379 2.031157 CGTGAGGTCGGCTTCAATTTTT 60.031 45.455 2.36 0.00 32.39 1.94
379 380 3.187637 CGTGAGGTCGGCTTCAATTTTTA 59.812 43.478 2.36 0.00 32.39 1.52
380 381 4.319911 CGTGAGGTCGGCTTCAATTTTTAA 60.320 41.667 2.36 0.00 32.39 1.52
381 382 5.525199 GTGAGGTCGGCTTCAATTTTTAAA 58.475 37.500 2.36 0.00 32.39 1.52
382 383 6.156519 GTGAGGTCGGCTTCAATTTTTAAAT 58.843 36.000 2.36 0.00 32.39 1.40
383 384 6.308041 GTGAGGTCGGCTTCAATTTTTAAATC 59.692 38.462 2.36 0.00 32.39 2.17
384 385 6.015856 TGAGGTCGGCTTCAATTTTTAAATCA 60.016 34.615 0.00 0.00 0.00 2.57
385 386 6.935167 AGGTCGGCTTCAATTTTTAAATCAT 58.065 32.000 0.00 0.00 0.00 2.45
386 387 7.386059 AGGTCGGCTTCAATTTTTAAATCATT 58.614 30.769 0.00 0.00 0.00 2.57
387 388 7.877612 AGGTCGGCTTCAATTTTTAAATCATTT 59.122 29.630 0.00 0.00 0.00 2.32
388 389 7.956943 GGTCGGCTTCAATTTTTAAATCATTTG 59.043 33.333 0.00 0.00 0.00 2.32
389 390 7.956943 GTCGGCTTCAATTTTTAAATCATTTGG 59.043 33.333 0.00 0.00 0.00 3.28
390 391 7.875041 TCGGCTTCAATTTTTAAATCATTTGGA 59.125 29.630 0.00 0.00 0.00 3.53
391 392 7.956943 CGGCTTCAATTTTTAAATCATTTGGAC 59.043 33.333 0.00 0.00 0.00 4.02
392 393 8.782144 GGCTTCAATTTTTAAATCATTTGGACA 58.218 29.630 0.00 0.00 0.00 4.02
402 403 5.769484 AATCATTTGGACATCTGATGAGC 57.231 39.130 23.59 14.10 31.05 4.26
403 404 4.498894 TCATTTGGACATCTGATGAGCT 57.501 40.909 23.59 1.64 0.00 4.09
404 405 4.449131 TCATTTGGACATCTGATGAGCTC 58.551 43.478 23.59 6.82 0.00 4.09
405 406 4.163649 TCATTTGGACATCTGATGAGCTCT 59.836 41.667 23.59 0.86 0.00 4.09
406 407 3.815856 TTGGACATCTGATGAGCTCTC 57.184 47.619 23.59 10.17 0.00 3.20
407 408 2.743553 TGGACATCTGATGAGCTCTCA 58.256 47.619 23.59 14.32 44.59 3.27
408 409 2.694109 TGGACATCTGATGAGCTCTCAG 59.306 50.000 25.26 25.26 43.61 3.35
409 410 2.546373 GGACATCTGATGAGCTCTCAGC 60.546 54.545 25.90 17.06 45.44 4.26
437 438 9.936759 AAAAAGACAAATTGAAGGTCTGTAAAA 57.063 25.926 0.00 0.00 40.80 1.52
438 439 9.936759 AAAAGACAAATTGAAGGTCTGTAAAAA 57.063 25.926 0.00 0.00 40.80 1.94
440 441 9.533253 AAGACAAATTGAAGGTCTGTAAAAATG 57.467 29.630 0.00 0.00 40.80 2.32
441 442 8.695456 AGACAAATTGAAGGTCTGTAAAAATGT 58.305 29.630 0.00 0.00 40.21 2.71
442 443 9.313118 GACAAATTGAAGGTCTGTAAAAATGTT 57.687 29.630 0.00 0.00 0.00 2.71
443 444 9.665719 ACAAATTGAAGGTCTGTAAAAATGTTT 57.334 25.926 0.00 0.00 0.00 2.83
447 448 9.965824 ATTGAAGGTCTGTAAAAATGTTTACTG 57.034 29.630 17.45 16.56 46.29 2.74
448 449 8.514330 TGAAGGTCTGTAAAAATGTTTACTGT 57.486 30.769 17.45 3.74 46.29 3.55
449 450 8.962679 TGAAGGTCTGTAAAAATGTTTACTGTT 58.037 29.630 17.45 8.95 46.29 3.16
450 451 9.447040 GAAGGTCTGTAAAAATGTTTACTGTTC 57.553 33.333 17.45 12.86 46.29 3.18
451 452 8.514330 AGGTCTGTAAAAATGTTTACTGTTCA 57.486 30.769 17.45 1.80 46.29 3.18
452 453 9.131791 AGGTCTGTAAAAATGTTTACTGTTCAT 57.868 29.630 17.45 10.51 46.29 2.57
453 454 9.180678 GGTCTGTAAAAATGTTTACTGTTCATG 57.819 33.333 17.45 0.00 46.29 3.07
454 455 9.730420 GTCTGTAAAAATGTTTACTGTTCATGT 57.270 29.630 17.45 0.00 46.29 3.21
463 464 9.515020 AATGTTTACTGTTCATGTACTGTTTTG 57.485 29.630 17.65 0.00 33.15 2.44
464 465 7.476667 TGTTTACTGTTCATGTACTGTTTTGG 58.523 34.615 17.65 0.00 33.15 3.28
465 466 7.337184 TGTTTACTGTTCATGTACTGTTTTGGA 59.663 33.333 17.65 0.27 33.15 3.53
466 467 5.751243 ACTGTTCATGTACTGTTTTGGAC 57.249 39.130 8.82 0.00 0.00 4.02
467 468 4.578928 ACTGTTCATGTACTGTTTTGGACC 59.421 41.667 8.82 0.00 0.00 4.46
468 469 3.562141 TGTTCATGTACTGTTTTGGACCG 59.438 43.478 4.01 0.00 0.00 4.79
469 470 3.755112 TCATGTACTGTTTTGGACCGA 57.245 42.857 0.00 0.00 0.00 4.69
470 471 4.280436 TCATGTACTGTTTTGGACCGAT 57.720 40.909 0.00 0.00 0.00 4.18
471 472 4.647611 TCATGTACTGTTTTGGACCGATT 58.352 39.130 0.00 0.00 0.00 3.34
472 473 5.067273 TCATGTACTGTTTTGGACCGATTT 58.933 37.500 0.00 0.00 0.00 2.17
473 474 4.822036 TGTACTGTTTTGGACCGATTTG 57.178 40.909 0.00 0.00 0.00 2.32
474 475 4.200874 TGTACTGTTTTGGACCGATTTGT 58.799 39.130 0.00 0.00 0.00 2.83
475 476 3.982576 ACTGTTTTGGACCGATTTGTC 57.017 42.857 0.00 0.00 34.42 3.18
486 487 5.934935 GACCGATTTGTCCTTTTTACTGA 57.065 39.130 0.00 0.00 0.00 3.41
487 488 5.928153 GACCGATTTGTCCTTTTTACTGAG 58.072 41.667 0.00 0.00 0.00 3.35
488 489 5.617252 ACCGATTTGTCCTTTTTACTGAGA 58.383 37.500 0.00 0.00 0.00 3.27
489 490 5.701290 ACCGATTTGTCCTTTTTACTGAGAG 59.299 40.000 0.00 0.00 0.00 3.20
490 491 5.390991 CCGATTTGTCCTTTTTACTGAGAGC 60.391 44.000 0.00 0.00 0.00 4.09
491 492 5.409826 CGATTTGTCCTTTTTACTGAGAGCT 59.590 40.000 0.00 0.00 0.00 4.09
492 493 6.566197 ATTTGTCCTTTTTACTGAGAGCTG 57.434 37.500 0.00 0.00 0.00 4.24
493 494 3.403038 TGTCCTTTTTACTGAGAGCTGC 58.597 45.455 0.00 0.00 0.00 5.25
494 495 3.071602 TGTCCTTTTTACTGAGAGCTGCT 59.928 43.478 0.00 0.00 0.00 4.24
495 496 4.283467 TGTCCTTTTTACTGAGAGCTGCTA 59.717 41.667 0.15 0.00 0.00 3.49
496 497 5.221641 TGTCCTTTTTACTGAGAGCTGCTAA 60.222 40.000 0.15 0.00 0.00 3.09
497 498 5.701290 GTCCTTTTTACTGAGAGCTGCTAAA 59.299 40.000 0.15 0.00 0.00 1.85
498 499 6.204882 GTCCTTTTTACTGAGAGCTGCTAAAA 59.795 38.462 0.15 1.68 0.00 1.52
499 500 6.942576 TCCTTTTTACTGAGAGCTGCTAAAAT 59.057 34.615 0.15 0.00 0.00 1.82
500 501 8.100791 TCCTTTTTACTGAGAGCTGCTAAAATA 58.899 33.333 0.15 0.00 0.00 1.40
501 502 8.897752 CCTTTTTACTGAGAGCTGCTAAAATAT 58.102 33.333 0.15 0.00 0.00 1.28
502 503 9.928236 CTTTTTACTGAGAGCTGCTAAAATATC 57.072 33.333 0.15 0.00 0.00 1.63
503 504 8.438676 TTTTACTGAGAGCTGCTAAAATATCC 57.561 34.615 0.15 0.00 0.00 2.59
504 505 5.620738 ACTGAGAGCTGCTAAAATATCCA 57.379 39.130 0.15 0.00 0.00 3.41
505 506 5.994250 ACTGAGAGCTGCTAAAATATCCAA 58.006 37.500 0.15 0.00 0.00 3.53
506 507 6.418101 ACTGAGAGCTGCTAAAATATCCAAA 58.582 36.000 0.15 0.00 0.00 3.28
507 508 7.059156 ACTGAGAGCTGCTAAAATATCCAAAT 58.941 34.615 0.15 0.00 0.00 2.32
508 509 7.013083 ACTGAGAGCTGCTAAAATATCCAAATG 59.987 37.037 0.15 0.00 0.00 2.32
509 510 7.056006 TGAGAGCTGCTAAAATATCCAAATGA 58.944 34.615 0.15 0.00 0.00 2.57
510 511 7.012704 TGAGAGCTGCTAAAATATCCAAATGAC 59.987 37.037 0.15 0.00 0.00 3.06
511 512 7.059156 AGAGCTGCTAAAATATCCAAATGACT 58.941 34.615 0.15 0.00 0.00 3.41
512 513 7.559170 AGAGCTGCTAAAATATCCAAATGACTT 59.441 33.333 0.15 0.00 0.00 3.01
513 514 7.486647 AGCTGCTAAAATATCCAAATGACTTG 58.513 34.615 0.00 0.00 34.52 3.16
514 515 7.340232 AGCTGCTAAAATATCCAAATGACTTGA 59.660 33.333 0.00 0.00 37.17 3.02
515 516 7.975616 GCTGCTAAAATATCCAAATGACTTGAA 59.024 33.333 0.00 0.00 37.17 2.69
516 517 9.859427 CTGCTAAAATATCCAAATGACTTGAAA 57.141 29.630 0.00 0.00 37.17 2.69
524 525 7.662604 ATCCAAATGACTTGAAATTTGAAGC 57.337 32.000 16.14 10.14 43.41 3.86
525 526 5.691305 TCCAAATGACTTGAAATTTGAAGCG 59.309 36.000 16.14 0.00 43.41 4.68
526 527 5.107375 CCAAATGACTTGAAATTTGAAGCGG 60.107 40.000 16.14 5.14 43.41 5.52
527 528 3.641437 TGACTTGAAATTTGAAGCGGG 57.359 42.857 16.14 0.00 0.00 6.13
528 529 2.288152 TGACTTGAAATTTGAAGCGGGC 60.288 45.455 16.14 5.53 0.00 6.13
529 530 1.000843 ACTTGAAATTTGAAGCGGGCC 59.999 47.619 16.14 0.00 0.00 5.80
530 531 1.273327 CTTGAAATTTGAAGCGGGCCT 59.727 47.619 0.84 0.00 0.00 5.19
531 532 0.887933 TGAAATTTGAAGCGGGCCTC 59.112 50.000 0.84 0.00 0.00 4.70
532 533 0.887933 GAAATTTGAAGCGGGCCTCA 59.112 50.000 0.84 0.00 0.00 3.86
533 534 0.603065 AAATTTGAAGCGGGCCTCAC 59.397 50.000 0.84 0.00 0.00 3.51
534 535 1.586154 AATTTGAAGCGGGCCTCACG 61.586 55.000 0.84 0.00 0.00 4.35
541 542 2.745884 CGGGCCTCACGCATCAAA 60.746 61.111 0.84 0.00 40.31 2.69
542 543 2.114670 CGGGCCTCACGCATCAAAT 61.115 57.895 0.84 0.00 40.31 2.32
543 544 1.656818 CGGGCCTCACGCATCAAATT 61.657 55.000 0.84 0.00 40.31 1.82
544 545 0.179129 GGGCCTCACGCATCAAATTG 60.179 55.000 0.84 0.00 40.31 2.32
545 546 0.527565 GGCCTCACGCATCAAATTGT 59.472 50.000 0.00 0.00 40.31 2.71
546 547 1.468054 GGCCTCACGCATCAAATTGTC 60.468 52.381 0.00 0.00 40.31 3.18
547 548 1.470098 GCCTCACGCATCAAATTGTCT 59.530 47.619 0.00 0.00 37.47 3.41
548 549 2.677836 GCCTCACGCATCAAATTGTCTA 59.322 45.455 0.00 0.00 37.47 2.59
549 550 3.126858 GCCTCACGCATCAAATTGTCTAA 59.873 43.478 0.00 0.00 37.47 2.10
550 551 4.651994 CCTCACGCATCAAATTGTCTAAC 58.348 43.478 0.00 0.00 0.00 2.34
551 552 4.320667 TCACGCATCAAATTGTCTAACG 57.679 40.909 0.00 0.00 0.00 3.18
552 553 2.840176 CACGCATCAAATTGTCTAACGC 59.160 45.455 0.00 0.00 0.00 4.84
553 554 2.482336 ACGCATCAAATTGTCTAACGCA 59.518 40.909 0.00 0.00 0.00 5.24
554 555 2.840176 CGCATCAAATTGTCTAACGCAC 59.160 45.455 0.00 0.00 0.00 5.34
555 556 3.666638 CGCATCAAATTGTCTAACGCACA 60.667 43.478 0.00 0.00 0.00 4.57
556 557 4.225984 GCATCAAATTGTCTAACGCACAA 58.774 39.130 0.00 0.00 38.12 3.33
557 558 4.679197 GCATCAAATTGTCTAACGCACAAA 59.321 37.500 0.00 0.00 37.30 2.83
558 559 5.174761 GCATCAAATTGTCTAACGCACAAAA 59.825 36.000 0.00 0.00 37.30 2.44
559 560 6.292061 GCATCAAATTGTCTAACGCACAAAAA 60.292 34.615 0.00 0.00 37.30 1.94
605 606 6.484818 TTTACGAATTCTTTTCTAACCGGG 57.515 37.500 6.32 0.00 0.00 5.73
606 607 4.011966 ACGAATTCTTTTCTAACCGGGT 57.988 40.909 6.32 0.00 0.00 5.28
607 608 3.749609 ACGAATTCTTTTCTAACCGGGTG 59.250 43.478 0.00 0.00 0.00 4.61
608 609 3.425758 CGAATTCTTTTCTAACCGGGTGC 60.426 47.826 0.00 0.00 0.00 5.01
609 610 2.642154 TTCTTTTCTAACCGGGTGCA 57.358 45.000 0.00 0.00 0.00 4.57
610 611 2.178912 TCTTTTCTAACCGGGTGCAG 57.821 50.000 0.00 1.10 0.00 4.41
611 612 1.695242 TCTTTTCTAACCGGGTGCAGA 59.305 47.619 0.00 3.87 0.00 4.26
612 613 2.304761 TCTTTTCTAACCGGGTGCAGAT 59.695 45.455 0.00 0.00 0.00 2.90
613 614 2.107950 TTTCTAACCGGGTGCAGATG 57.892 50.000 0.00 0.00 0.00 2.90
614 615 1.271856 TTCTAACCGGGTGCAGATGA 58.728 50.000 0.00 0.00 0.00 2.92
615 616 0.824109 TCTAACCGGGTGCAGATGAG 59.176 55.000 0.00 0.00 0.00 2.90
616 617 0.537188 CTAACCGGGTGCAGATGAGT 59.463 55.000 0.00 0.00 0.00 3.41
617 618 0.535335 TAACCGGGTGCAGATGAGTC 59.465 55.000 0.00 0.00 0.00 3.36
618 619 1.194781 AACCGGGTGCAGATGAGTCT 61.195 55.000 6.32 0.00 34.14 3.24
637 638 3.122971 GGCACCGAAACGCCCTAC 61.123 66.667 0.00 0.00 42.82 3.18
638 639 2.047560 GCACCGAAACGCCCTACT 60.048 61.111 0.00 0.00 0.00 2.57
639 640 2.098831 GCACCGAAACGCCCTACTC 61.099 63.158 0.00 0.00 0.00 2.59
640 641 1.804326 CACCGAAACGCCCTACTCG 60.804 63.158 0.00 0.00 0.00 4.18
641 642 1.973281 ACCGAAACGCCCTACTCGA 60.973 57.895 0.00 0.00 33.13 4.04
642 643 1.226603 CCGAAACGCCCTACTCGAG 60.227 63.158 11.84 11.84 33.13 4.04
643 644 1.226603 CGAAACGCCCTACTCGAGG 60.227 63.158 18.41 0.00 46.25 4.63
651 652 3.225608 CCTACTCGAGGGGAATGGT 57.774 57.895 18.41 0.00 42.39 3.55
652 653 1.497161 CCTACTCGAGGGGAATGGTT 58.503 55.000 18.41 0.00 42.39 3.67
653 654 1.838077 CCTACTCGAGGGGAATGGTTT 59.162 52.381 18.41 0.00 42.39 3.27
654 655 2.238898 CCTACTCGAGGGGAATGGTTTT 59.761 50.000 18.41 0.00 42.39 2.43
655 656 2.200373 ACTCGAGGGGAATGGTTTTG 57.800 50.000 18.41 0.00 0.00 2.44
656 657 1.271926 ACTCGAGGGGAATGGTTTTGG 60.272 52.381 18.41 0.00 0.00 3.28
657 658 0.610785 TCGAGGGGAATGGTTTTGGC 60.611 55.000 0.00 0.00 0.00 4.52
658 659 1.604147 CGAGGGGAATGGTTTTGGCC 61.604 60.000 0.00 0.00 0.00 5.36
659 660 0.544120 GAGGGGAATGGTTTTGGCCA 60.544 55.000 0.00 0.00 43.48 5.36
660 661 0.835971 AGGGGAATGGTTTTGGCCAC 60.836 55.000 3.88 0.00 41.94 5.01
661 662 1.291906 GGGAATGGTTTTGGCCACG 59.708 57.895 3.88 0.00 41.94 4.94
662 663 1.468506 GGGAATGGTTTTGGCCACGT 61.469 55.000 3.88 0.00 41.94 4.49
663 664 0.391228 GGAATGGTTTTGGCCACGTT 59.609 50.000 3.88 0.43 41.94 3.99
664 665 1.614413 GGAATGGTTTTGGCCACGTTA 59.386 47.619 3.88 0.00 41.94 3.18
665 666 2.036089 GGAATGGTTTTGGCCACGTTAA 59.964 45.455 3.88 0.00 41.94 2.01
666 667 3.306433 GGAATGGTTTTGGCCACGTTAAT 60.306 43.478 3.88 0.00 41.94 1.40
667 668 2.802787 TGGTTTTGGCCACGTTAATG 57.197 45.000 3.88 0.00 32.81 1.90
668 669 2.032620 TGGTTTTGGCCACGTTAATGT 58.967 42.857 3.88 0.00 32.81 2.71
669 670 3.220110 TGGTTTTGGCCACGTTAATGTA 58.780 40.909 3.88 0.00 32.81 2.29
670 671 3.635373 TGGTTTTGGCCACGTTAATGTAA 59.365 39.130 3.88 0.00 32.81 2.41
671 672 4.231439 GGTTTTGGCCACGTTAATGTAAG 58.769 43.478 3.88 0.00 0.00 2.34
672 673 4.261698 GGTTTTGGCCACGTTAATGTAAGT 60.262 41.667 3.88 0.00 0.00 2.24
673 674 4.491234 TTTGGCCACGTTAATGTAAGTG 57.509 40.909 3.88 0.00 0.00 3.16
681 682 6.236017 CACGTTAATGTAAGTGGAACATGT 57.764 37.500 0.00 0.00 44.52 3.21
682 683 6.664515 CACGTTAATGTAAGTGGAACATGTT 58.335 36.000 11.78 11.78 44.52 2.71
683 684 7.136119 CACGTTAATGTAAGTGGAACATGTTT 58.864 34.615 13.36 0.00 44.52 2.83
684 685 7.646130 CACGTTAATGTAAGTGGAACATGTTTT 59.354 33.333 13.36 5.51 44.52 2.43
685 686 7.858879 ACGTTAATGTAAGTGGAACATGTTTTC 59.141 33.333 13.36 9.03 44.52 2.29
686 687 7.858382 CGTTAATGTAAGTGGAACATGTTTTCA 59.142 33.333 13.36 11.54 44.52 2.69
687 688 8.964150 GTTAATGTAAGTGGAACATGTTTTCAC 58.036 33.333 25.56 25.56 44.52 3.18
688 689 6.959639 ATGTAAGTGGAACATGTTTTCACT 57.040 33.333 27.95 27.95 44.52 3.41
689 690 6.767524 TGTAAGTGGAACATGTTTTCACTT 57.232 33.333 35.76 35.76 44.52 3.16
690 691 7.867305 TGTAAGTGGAACATGTTTTCACTTA 57.133 32.000 34.50 34.50 44.52 2.24
691 692 8.282455 TGTAAGTGGAACATGTTTTCACTTAA 57.718 30.769 36.70 29.67 43.01 1.85
692 693 8.740906 TGTAAGTGGAACATGTTTTCACTTAAA 58.259 29.630 36.70 33.50 43.01 1.52
693 694 9.233232 GTAAGTGGAACATGTTTTCACTTAAAG 57.767 33.333 36.70 3.60 43.01 1.85
694 695 6.273071 AGTGGAACATGTTTTCACTTAAAGC 58.727 36.000 27.95 12.48 44.52 3.51
695 696 6.096846 AGTGGAACATGTTTTCACTTAAAGCT 59.903 34.615 27.95 14.41 44.52 3.74
696 697 6.756542 GTGGAACATGTTTTCACTTAAAGCTT 59.243 34.615 25.60 0.00 44.52 3.74
697 698 7.918562 GTGGAACATGTTTTCACTTAAAGCTTA 59.081 33.333 25.60 0.00 44.52 3.09
698 699 8.637986 TGGAACATGTTTTCACTTAAAGCTTAT 58.362 29.630 13.36 0.00 0.00 1.73
701 702 9.626045 AACATGTTTTCACTTAAAGCTTATAGC 57.374 29.630 4.92 0.00 42.84 2.97
740 750 9.713713 TTTTCACTTAAAGCAAACCTAAAACTT 57.286 25.926 0.00 0.00 0.00 2.66
741 751 9.713713 TTTCACTTAAAGCAAACCTAAAACTTT 57.286 25.926 0.00 0.00 35.00 2.66
742 752 8.696410 TCACTTAAAGCAAACCTAAAACTTTG 57.304 30.769 0.00 0.00 33.01 2.77
743 753 8.524487 TCACTTAAAGCAAACCTAAAACTTTGA 58.476 29.630 0.00 0.00 33.01 2.69
744 754 9.145865 CACTTAAAGCAAACCTAAAACTTTGAA 57.854 29.630 0.00 0.00 33.01 2.69
745 755 9.884636 ACTTAAAGCAAACCTAAAACTTTGAAT 57.115 25.926 0.00 0.00 33.01 2.57
778 788 1.808891 CGAAACCACCTTCGTTCCTGT 60.809 52.381 0.00 0.00 42.53 4.00
916 985 0.246635 ATAAGCGAGCAGAACACGGT 59.753 50.000 0.00 0.00 45.03 4.83
1028 1114 1.187087 CGCCTCTTCCACTACTCCTT 58.813 55.000 0.00 0.00 0.00 3.36
1110 1205 3.744719 CGAGCGGTGAACCTCGGA 61.745 66.667 0.00 0.00 45.20 4.55
1196 1295 5.185454 TCTCCTGGTAATTAACGTCGTAGA 58.815 41.667 0.00 0.00 0.00 2.59
1202 1301 5.004630 TGGTAATTAACGTCGTAGATTTGCG 59.995 40.000 0.00 0.00 40.67 4.85
1213 1312 5.118664 GTCGTAGATTTGCGTATGCATACAT 59.881 40.000 30.83 19.27 46.86 2.29
1214 1313 6.307077 GTCGTAGATTTGCGTATGCATACATA 59.693 38.462 30.83 18.72 46.86 2.29
1227 1330 5.100644 ATGCATACATACCAACACACGTGT 61.101 41.667 17.22 17.22 39.24 4.49
1281 1419 6.094881 CCCTGTTTTTAGTTTCTTGACTGACA 59.905 38.462 0.00 0.00 0.00 3.58
1599 1742 4.424711 ATCATGGCGCCCAACGGT 62.425 61.111 26.77 2.11 43.93 4.83
1650 1939 4.634012 ACTACTATGTTTGCCAACTGGA 57.366 40.909 0.00 0.00 37.39 3.86
1673 1962 5.868763 ACAACAAGTGTATGCTAGCAAGCC 61.869 45.833 23.54 12.74 43.18 4.35
1736 2504 2.421424 CCTCCAATGTTGACTAGCTTGC 59.579 50.000 0.00 0.00 0.00 4.01
1971 2740 1.221840 CTGCAACGGCTATGGGACT 59.778 57.895 0.00 0.00 41.91 3.85
2016 2789 6.315144 TCAGGGTAAATACATTGAACATCACG 59.685 38.462 0.00 0.00 0.00 4.35
2018 2794 5.220970 GGGTAAATACATTGAACATCACGGG 60.221 44.000 0.00 0.00 0.00 5.28
2095 2974 6.842163 AGCAACACTTGTACATTATGCTTAC 58.158 36.000 13.20 0.00 39.69 2.34
2249 3266 8.888579 ACTTGATCGGATATACCTAGTTTTTG 57.111 34.615 0.00 0.00 36.31 2.44
2250 3267 7.931948 ACTTGATCGGATATACCTAGTTTTTGG 59.068 37.037 0.00 0.00 36.31 3.28
2327 3347 7.775729 CAAGTTTTTGGTGTTCACGATATAC 57.224 36.000 0.00 0.00 0.00 1.47
2368 3388 5.851047 TGTGCGTTATCATCATCATCATC 57.149 39.130 0.00 0.00 0.00 2.92
2369 3389 5.299148 TGTGCGTTATCATCATCATCATCA 58.701 37.500 0.00 0.00 0.00 3.07
2370 3390 5.935789 TGTGCGTTATCATCATCATCATCAT 59.064 36.000 0.00 0.00 0.00 2.45
2371 3391 6.091713 TGTGCGTTATCATCATCATCATCATC 59.908 38.462 0.00 0.00 0.00 2.92
2372 3392 6.091713 GTGCGTTATCATCATCATCATCATCA 59.908 38.462 0.00 0.00 0.00 3.07
2373 3393 6.821665 TGCGTTATCATCATCATCATCATCAT 59.178 34.615 0.00 0.00 0.00 2.45
2374 3394 7.011109 TGCGTTATCATCATCATCATCATCATC 59.989 37.037 0.00 0.00 0.00 2.92
2375 3395 7.011109 GCGTTATCATCATCATCATCATCATCA 59.989 37.037 0.00 0.00 0.00 3.07
2376 3396 9.046296 CGTTATCATCATCATCATCATCATCAT 57.954 33.333 0.00 0.00 0.00 2.45
2408 3428 7.439356 TCATCATCATCATCATCATCATCATCG 59.561 37.037 0.00 0.00 0.00 3.84
2510 3547 5.733620 AGAAATAGGTACCGTTGTTCTCA 57.266 39.130 6.18 0.00 0.00 3.27
2516 3553 2.059541 GTACCGTTGTTCTCACTCTGC 58.940 52.381 0.00 0.00 0.00 4.26
2692 3917 0.178926 TAACGACCCCAGACCTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
2825 4050 2.953648 TCGGCTCAACTGTCGGAATATA 59.046 45.455 0.00 0.00 0.00 0.86
2832 4057 4.082408 TCAACTGTCGGAATATATAGGCCG 60.082 45.833 16.07 16.07 44.83 6.13
3114 4358 6.919662 CACAAACTGTGCAAGTGATAGATTTT 59.080 34.615 0.00 0.00 41.89 1.82
3330 4574 3.771160 CTCGCTGGCGGGTTACCT 61.771 66.667 14.94 0.00 40.25 3.08
3408 4652 5.188327 TCACCGTGCAACAAAATATTGAA 57.812 34.783 0.00 0.00 38.94 2.69
3680 4956 0.893727 GAGGGCAACGTTTGGATGGT 60.894 55.000 0.00 0.00 37.60 3.55
3733 5009 4.102210 CACTGGAGTATGGAGTGGATGATT 59.898 45.833 0.00 0.00 34.63 2.57
3913 6497 3.784338 CCATTTGCAACACATGTATCCC 58.216 45.455 0.00 0.00 0.00 3.85
3936 6520 7.069702 TCCCGTGTTGAAATATATACACCACTA 59.930 37.037 9.77 0.21 38.06 2.74
4053 6638 5.105392 TGCTGCGGGATTTCAAAGATTAATT 60.105 36.000 0.00 0.00 0.00 1.40
4100 6685 9.023962 TGAAATGACCTACATCAAAAGCTATTT 57.976 29.630 0.00 0.00 38.38 1.40
4102 6687 9.860898 AAATGACCTACATCAAAAGCTATTTTC 57.139 29.630 0.00 0.00 35.95 2.29
4125 6734 2.757314 TGGAAGCAATTGTGTGTGAACA 59.243 40.909 7.40 0.00 0.00 3.18
4126 6735 3.194329 TGGAAGCAATTGTGTGTGAACAA 59.806 39.130 7.40 0.00 43.82 2.83
4127 6736 4.180057 GGAAGCAATTGTGTGTGAACAAA 58.820 39.130 7.40 0.00 42.98 2.83
4128 6737 4.268405 GGAAGCAATTGTGTGTGAACAAAG 59.732 41.667 7.40 0.00 42.98 2.77
4129 6738 4.717233 AGCAATTGTGTGTGAACAAAGA 57.283 36.364 7.40 0.00 42.98 2.52
4130 6739 4.675510 AGCAATTGTGTGTGAACAAAGAG 58.324 39.130 7.40 0.00 42.98 2.85
4131 6740 4.158394 AGCAATTGTGTGTGAACAAAGAGT 59.842 37.500 7.40 0.00 42.98 3.24
4132 6741 5.356751 AGCAATTGTGTGTGAACAAAGAGTA 59.643 36.000 7.40 0.00 42.98 2.59
4133 6742 6.039717 AGCAATTGTGTGTGAACAAAGAGTAT 59.960 34.615 7.40 0.00 42.98 2.12
4134 6743 6.142798 GCAATTGTGTGTGAACAAAGAGTATG 59.857 38.462 7.40 0.00 42.98 2.39
4135 6744 4.811555 TGTGTGTGAACAAAGAGTATGC 57.188 40.909 0.00 0.00 0.00 3.14
4136 6745 4.195416 TGTGTGTGAACAAAGAGTATGCA 58.805 39.130 0.00 0.00 0.00 3.96
4137 6746 4.821260 TGTGTGTGAACAAAGAGTATGCAT 59.179 37.500 3.79 3.79 0.00 3.96
4138 6747 5.149273 GTGTGTGAACAAAGAGTATGCATG 58.851 41.667 10.16 0.00 0.00 4.06
4139 6748 4.821260 TGTGTGAACAAAGAGTATGCATGT 59.179 37.500 10.16 0.00 0.00 3.21
4140 6749 5.994668 TGTGTGAACAAAGAGTATGCATGTA 59.005 36.000 10.16 0.00 0.00 2.29
4141 6750 6.073276 TGTGTGAACAAAGAGTATGCATGTAC 60.073 38.462 10.16 0.00 0.00 2.90
4142 6751 5.120053 TGTGAACAAAGAGTATGCATGTACG 59.880 40.000 10.16 0.00 0.00 3.67
4143 6752 5.120208 GTGAACAAAGAGTATGCATGTACGT 59.880 40.000 10.16 0.00 0.00 3.57
4144 6753 5.699001 TGAACAAAGAGTATGCATGTACGTT 59.301 36.000 10.16 3.57 0.00 3.99
4145 6754 5.530519 ACAAAGAGTATGCATGTACGTTG 57.469 39.130 10.16 15.34 0.00 4.10
4146 6755 4.391830 ACAAAGAGTATGCATGTACGTTGG 59.608 41.667 10.16 0.55 0.00 3.77
4147 6756 4.465632 AAGAGTATGCATGTACGTTGGA 57.534 40.909 10.16 0.00 0.00 3.53
4148 6757 3.782046 AGAGTATGCATGTACGTTGGAC 58.218 45.455 10.16 0.00 0.00 4.02
4199 6808 5.278463 GGGTATGCATGTGCTACAAAATAGG 60.278 44.000 10.16 0.00 42.66 2.57
4264 6874 5.929058 TGCATGTTGAGAGAATAGAGTCT 57.071 39.130 0.00 0.00 0.00 3.24
4271 6881 2.962421 GAGAGAATAGAGTCTGTGGGGG 59.038 54.545 1.86 0.00 0.00 5.40
4343 6953 1.337703 TGCAGGTCATGAAAGTTGTGC 59.662 47.619 0.00 1.24 0.00 4.57
4358 6968 7.439955 TGAAAGTTGTGCGAACTAGAAAATCTA 59.560 33.333 0.00 0.00 0.00 1.98
4391 7001 7.401955 TGGAAATCAATACACACATATGCAA 57.598 32.000 1.58 0.00 0.00 4.08
4546 7160 4.749099 CCTCTCTCTGTTTTTGTCACTCTG 59.251 45.833 0.00 0.00 0.00 3.35
4579 7194 5.893824 AGGGAAGAACTCTGAATTTTTGTGT 59.106 36.000 0.00 0.00 0.00 3.72
4586 7201 5.133221 ACTCTGAATTTTTGTGTAGCACCT 58.867 37.500 0.00 0.00 32.73 4.00
4652 7267 4.574013 GCAAACATGATGTAGAGCTAGCTT 59.426 41.667 20.42 11.34 0.00 3.74
4668 7283 4.321899 GCTAGCTTGATCTCCTACTGGATG 60.322 50.000 7.70 0.00 42.29 3.51
4718 7333 4.716003 GGCCTACAAACGAGCCTT 57.284 55.556 0.00 0.00 42.34 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.325150 CGAACTCGAATGAAAAAGCTTTTTATA 57.675 29.630 31.58 24.19 39.92 0.98
21 22 7.860872 ACGAACTCGAATGAAAAAGCTTTTTAT 59.139 29.630 31.58 22.00 39.92 1.40
22 23 7.190871 ACGAACTCGAATGAAAAAGCTTTTTA 58.809 30.769 31.58 21.15 39.92 1.52
23 24 6.033966 ACGAACTCGAATGAAAAAGCTTTTT 58.966 32.000 31.89 31.89 41.34 1.94
24 25 5.578776 ACGAACTCGAATGAAAAAGCTTTT 58.421 33.333 18.74 18.74 43.02 2.27
25 26 5.169836 ACGAACTCGAATGAAAAAGCTTT 57.830 34.783 5.69 5.69 43.02 3.51
26 27 4.813296 ACGAACTCGAATGAAAAAGCTT 57.187 36.364 6.05 0.00 43.02 3.74
27 28 5.671329 GCATACGAACTCGAATGAAAAAGCT 60.671 40.000 6.05 0.00 43.02 3.74
28 29 4.492294 GCATACGAACTCGAATGAAAAAGC 59.508 41.667 6.05 0.00 43.02 3.51
29 30 5.617609 TGCATACGAACTCGAATGAAAAAG 58.382 37.500 6.05 0.00 43.02 2.27
30 31 5.599359 TGCATACGAACTCGAATGAAAAA 57.401 34.783 6.05 0.00 43.02 1.94
31 32 5.599359 TTGCATACGAACTCGAATGAAAA 57.401 34.783 6.05 0.00 43.02 2.29
32 33 5.599359 TTTGCATACGAACTCGAATGAAA 57.401 34.783 6.05 0.00 43.02 2.69
33 34 5.178623 ACTTTTGCATACGAACTCGAATGAA 59.821 36.000 6.05 0.00 43.02 2.57
34 35 4.688879 ACTTTTGCATACGAACTCGAATGA 59.311 37.500 6.05 0.00 43.02 2.57
35 36 4.957971 ACTTTTGCATACGAACTCGAATG 58.042 39.130 6.05 0.00 43.02 2.67
36 37 5.607119 AACTTTTGCATACGAACTCGAAT 57.393 34.783 6.05 0.00 43.02 3.34
37 38 6.530567 CATAACTTTTGCATACGAACTCGAA 58.469 36.000 6.05 0.00 43.02 3.71
38 39 5.445407 GCATAACTTTTGCATACGAACTCGA 60.445 40.000 6.05 0.00 39.73 4.04
39 40 4.723862 GCATAACTTTTGCATACGAACTCG 59.276 41.667 0.00 0.00 41.50 4.18
40 41 5.028375 GGCATAACTTTTGCATACGAACTC 58.972 41.667 6.55 0.00 41.95 3.01
41 42 4.142469 GGGCATAACTTTTGCATACGAACT 60.142 41.667 6.55 0.00 41.95 3.01
42 43 4.102649 GGGCATAACTTTTGCATACGAAC 58.897 43.478 6.55 0.00 41.95 3.95
43 44 3.759086 TGGGCATAACTTTTGCATACGAA 59.241 39.130 6.55 0.00 41.95 3.85
44 45 3.348119 TGGGCATAACTTTTGCATACGA 58.652 40.909 6.55 0.00 41.95 3.43
45 46 3.773860 TGGGCATAACTTTTGCATACG 57.226 42.857 6.55 0.00 41.95 3.06
46 47 6.105333 TGAAATGGGCATAACTTTTGCATAC 58.895 36.000 6.55 0.00 41.95 2.39
47 48 6.291648 TGAAATGGGCATAACTTTTGCATA 57.708 33.333 6.55 0.00 41.95 3.14
48 49 5.163281 TGAAATGGGCATAACTTTTGCAT 57.837 34.783 6.55 0.00 41.95 3.96
49 50 4.613925 TGAAATGGGCATAACTTTTGCA 57.386 36.364 6.55 0.00 41.95 4.08
50 51 5.238214 TGTTTGAAATGGGCATAACTTTTGC 59.762 36.000 0.00 0.00 39.41 3.68
51 52 6.857777 TGTTTGAAATGGGCATAACTTTTG 57.142 33.333 0.00 0.00 0.00 2.44
52 53 8.462589 AATTGTTTGAAATGGGCATAACTTTT 57.537 26.923 0.00 0.00 0.00 2.27
53 54 8.462589 AAATTGTTTGAAATGGGCATAACTTT 57.537 26.923 0.00 0.00 0.00 2.66
54 55 8.462589 AAAATTGTTTGAAATGGGCATAACTT 57.537 26.923 0.00 0.00 0.00 2.66
55 56 8.462589 AAAAATTGTTTGAAATGGGCATAACT 57.537 26.923 0.00 0.00 0.00 2.24
80 81 9.587772 TGTTCGGATTTTTAAAAATGTTCTCAA 57.412 25.926 26.69 10.46 38.64 3.02
81 82 9.243637 CTGTTCGGATTTTTAAAAATGTTCTCA 57.756 29.630 26.69 18.16 38.64 3.27
82 83 9.458374 TCTGTTCGGATTTTTAAAAATGTTCTC 57.542 29.630 26.69 14.69 38.64 2.87
83 84 9.981114 ATCTGTTCGGATTTTTAAAAATGTTCT 57.019 25.926 26.69 7.12 38.64 3.01
198 199 7.977789 TGCTTTTTCAGTTTCTTTCCTTTTT 57.022 28.000 0.00 0.00 0.00 1.94
199 200 7.977789 TTGCTTTTTCAGTTTCTTTCCTTTT 57.022 28.000 0.00 0.00 0.00 2.27
200 201 7.977789 TTTGCTTTTTCAGTTTCTTTCCTTT 57.022 28.000 0.00 0.00 0.00 3.11
201 202 7.977789 TTTTGCTTTTTCAGTTTCTTTCCTT 57.022 28.000 0.00 0.00 0.00 3.36
202 203 7.977789 TTTTTGCTTTTTCAGTTTCTTTCCT 57.022 28.000 0.00 0.00 0.00 3.36
276 277 9.541143 TTTGCTTTTCTCGATTTTCCTAATTTT 57.459 25.926 0.00 0.00 0.00 1.82
277 278 9.541143 TTTTGCTTTTCTCGATTTTCCTAATTT 57.459 25.926 0.00 0.00 0.00 1.82
278 279 9.541143 TTTTTGCTTTTCTCGATTTTCCTAATT 57.459 25.926 0.00 0.00 0.00 1.40
279 280 9.196552 CTTTTTGCTTTTCTCGATTTTCCTAAT 57.803 29.630 0.00 0.00 0.00 1.73
280 281 8.410141 TCTTTTTGCTTTTCTCGATTTTCCTAA 58.590 29.630 0.00 0.00 0.00 2.69
281 282 7.936584 TCTTTTTGCTTTTCTCGATTTTCCTA 58.063 30.769 0.00 0.00 0.00 2.94
282 283 6.805713 TCTTTTTGCTTTTCTCGATTTTCCT 58.194 32.000 0.00 0.00 0.00 3.36
283 284 6.918022 TCTCTTTTTGCTTTTCTCGATTTTCC 59.082 34.615 0.00 0.00 0.00 3.13
284 285 7.914537 TCTCTTTTTGCTTTTCTCGATTTTC 57.085 32.000 0.00 0.00 0.00 2.29
285 286 8.702163 TTTCTCTTTTTGCTTTTCTCGATTTT 57.298 26.923 0.00 0.00 0.00 1.82
286 287 8.702163 TTTTCTCTTTTTGCTTTTCTCGATTT 57.298 26.923 0.00 0.00 0.00 2.17
287 288 8.702163 TTTTTCTCTTTTTGCTTTTCTCGATT 57.298 26.923 0.00 0.00 0.00 3.34
333 334 6.579292 CGCATCAAATTTCTACCGTACAAAAA 59.421 34.615 0.00 0.00 0.00 1.94
334 335 6.081049 CGCATCAAATTTCTACCGTACAAAA 58.919 36.000 0.00 0.00 0.00 2.44
335 336 5.179742 ACGCATCAAATTTCTACCGTACAAA 59.820 36.000 0.00 0.00 0.00 2.83
336 337 4.691685 ACGCATCAAATTTCTACCGTACAA 59.308 37.500 0.00 0.00 0.00 2.41
337 338 4.092237 CACGCATCAAATTTCTACCGTACA 59.908 41.667 0.00 0.00 0.00 2.90
338 339 4.327898 TCACGCATCAAATTTCTACCGTAC 59.672 41.667 0.00 0.00 0.00 3.67
339 340 4.496360 TCACGCATCAAATTTCTACCGTA 58.504 39.130 0.00 0.00 0.00 4.02
340 341 3.331150 TCACGCATCAAATTTCTACCGT 58.669 40.909 0.00 0.00 0.00 4.83
341 342 3.242413 CCTCACGCATCAAATTTCTACCG 60.242 47.826 0.00 0.00 0.00 4.02
342 343 3.689649 ACCTCACGCATCAAATTTCTACC 59.310 43.478 0.00 0.00 0.00 3.18
343 344 4.492570 CGACCTCACGCATCAAATTTCTAC 60.493 45.833 0.00 0.00 0.00 2.59
344 345 3.616821 CGACCTCACGCATCAAATTTCTA 59.383 43.478 0.00 0.00 0.00 2.10
345 346 2.416547 CGACCTCACGCATCAAATTTCT 59.583 45.455 0.00 0.00 0.00 2.52
346 347 2.476185 CCGACCTCACGCATCAAATTTC 60.476 50.000 0.00 0.00 0.00 2.17
347 348 1.468520 CCGACCTCACGCATCAAATTT 59.531 47.619 0.00 0.00 0.00 1.82
348 349 1.086696 CCGACCTCACGCATCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
349 350 1.369091 GCCGACCTCACGCATCAAAT 61.369 55.000 0.00 0.00 0.00 2.32
350 351 2.032634 GCCGACCTCACGCATCAAA 61.033 57.895 0.00 0.00 0.00 2.69
351 352 2.434185 GCCGACCTCACGCATCAA 60.434 61.111 0.00 0.00 0.00 2.57
352 353 2.835701 GAAGCCGACCTCACGCATCA 62.836 60.000 0.00 0.00 0.00 3.07
353 354 2.125512 AAGCCGACCTCACGCATC 60.126 61.111 0.00 0.00 0.00 3.91
354 355 2.125512 GAAGCCGACCTCACGCAT 60.126 61.111 0.00 0.00 0.00 4.73
355 356 2.449031 ATTGAAGCCGACCTCACGCA 62.449 55.000 0.00 0.00 0.00 5.24
356 357 1.298859 AATTGAAGCCGACCTCACGC 61.299 55.000 0.00 0.00 0.00 5.34
357 358 1.156736 AAATTGAAGCCGACCTCACG 58.843 50.000 0.00 0.00 0.00 4.35
358 359 3.643159 AAAAATTGAAGCCGACCTCAC 57.357 42.857 0.00 0.00 0.00 3.51
359 360 5.776173 TTTAAAAATTGAAGCCGACCTCA 57.224 34.783 0.00 0.00 0.00 3.86
360 361 6.386654 TGATTTAAAAATTGAAGCCGACCTC 58.613 36.000 0.00 0.00 0.00 3.85
361 362 6.339587 TGATTTAAAAATTGAAGCCGACCT 57.660 33.333 0.00 0.00 0.00 3.85
362 363 7.595311 AATGATTTAAAAATTGAAGCCGACC 57.405 32.000 0.00 0.00 0.00 4.79
363 364 7.956943 CCAAATGATTTAAAAATTGAAGCCGAC 59.043 33.333 0.00 0.00 0.00 4.79
364 365 7.875041 TCCAAATGATTTAAAAATTGAAGCCGA 59.125 29.630 0.00 0.00 0.00 5.54
365 366 7.956943 GTCCAAATGATTTAAAAATTGAAGCCG 59.043 33.333 0.00 0.00 0.00 5.52
366 367 8.782144 TGTCCAAATGATTTAAAAATTGAAGCC 58.218 29.630 0.00 0.00 0.00 4.35
376 377 8.192774 GCTCATCAGATGTCCAAATGATTTAAA 58.807 33.333 10.34 0.00 30.09 1.52
377 378 7.558807 AGCTCATCAGATGTCCAAATGATTTAA 59.441 33.333 10.34 0.00 30.09 1.52
378 379 7.058525 AGCTCATCAGATGTCCAAATGATTTA 58.941 34.615 10.34 0.00 30.09 1.40
379 380 5.892119 AGCTCATCAGATGTCCAAATGATTT 59.108 36.000 10.34 0.00 30.09 2.17
380 381 5.446860 AGCTCATCAGATGTCCAAATGATT 58.553 37.500 10.34 0.00 30.09 2.57
381 382 5.050126 AGCTCATCAGATGTCCAAATGAT 57.950 39.130 10.34 0.00 32.70 2.45
382 383 4.163649 AGAGCTCATCAGATGTCCAAATGA 59.836 41.667 17.77 0.00 0.00 2.57
383 384 4.452825 AGAGCTCATCAGATGTCCAAATG 58.547 43.478 17.77 0.00 0.00 2.32
384 385 4.163649 TGAGAGCTCATCAGATGTCCAAAT 59.836 41.667 17.77 0.00 34.14 2.32
385 386 3.516700 TGAGAGCTCATCAGATGTCCAAA 59.483 43.478 17.77 0.00 34.14 3.28
386 387 3.102204 TGAGAGCTCATCAGATGTCCAA 58.898 45.455 17.77 0.00 34.14 3.53
387 388 2.694109 CTGAGAGCTCATCAGATGTCCA 59.306 50.000 26.28 6.72 45.80 4.02
388 389 2.546373 GCTGAGAGCTCATCAGATGTCC 60.546 54.545 30.86 17.54 45.80 4.02
389 390 2.101082 TGCTGAGAGCTCATCAGATGTC 59.899 50.000 30.86 19.98 45.80 3.06
390 391 2.108970 TGCTGAGAGCTCATCAGATGT 58.891 47.619 30.86 7.33 45.80 3.06
391 392 2.892784 TGCTGAGAGCTCATCAGATG 57.107 50.000 30.86 16.27 45.80 2.90
392 393 3.908643 TTTGCTGAGAGCTCATCAGAT 57.091 42.857 30.86 8.64 45.80 2.90
393 394 3.690475 TTTTGCTGAGAGCTCATCAGA 57.310 42.857 30.86 19.75 45.80 3.27
411 412 9.936759 TTTTACAGACCTTCAATTTGTCTTTTT 57.063 25.926 0.00 0.00 37.25 1.94
412 413 9.936759 TTTTTACAGACCTTCAATTTGTCTTTT 57.063 25.926 0.00 0.00 37.25 2.27
414 415 9.533253 CATTTTTACAGACCTTCAATTTGTCTT 57.467 29.630 0.00 0.00 37.25 3.01
415 416 8.695456 ACATTTTTACAGACCTTCAATTTGTCT 58.305 29.630 0.00 0.00 39.86 3.41
416 417 8.871686 ACATTTTTACAGACCTTCAATTTGTC 57.128 30.769 0.00 0.00 0.00 3.18
417 418 9.665719 AAACATTTTTACAGACCTTCAATTTGT 57.334 25.926 0.00 0.00 0.00 2.83
421 422 9.965824 CAGTAAACATTTTTACAGACCTTCAAT 57.034 29.630 15.08 0.00 46.66 2.57
422 423 8.962679 ACAGTAAACATTTTTACAGACCTTCAA 58.037 29.630 15.08 0.00 46.66 2.69
423 424 8.514330 ACAGTAAACATTTTTACAGACCTTCA 57.486 30.769 15.08 0.00 46.66 3.02
424 425 9.447040 GAACAGTAAACATTTTTACAGACCTTC 57.553 33.333 15.08 5.54 46.66 3.46
425 426 8.962679 TGAACAGTAAACATTTTTACAGACCTT 58.037 29.630 15.08 0.72 46.66 3.50
426 427 8.514330 TGAACAGTAAACATTTTTACAGACCT 57.486 30.769 15.08 0.86 46.66 3.85
427 428 9.180678 CATGAACAGTAAACATTTTTACAGACC 57.819 33.333 15.08 6.74 46.66 3.85
428 429 9.730420 ACATGAACAGTAAACATTTTTACAGAC 57.270 29.630 15.08 8.61 46.66 3.51
437 438 9.515020 CAAAACAGTACATGAACAGTAAACATT 57.485 29.630 0.00 0.00 0.00 2.71
438 439 8.134895 CCAAAACAGTACATGAACAGTAAACAT 58.865 33.333 0.00 0.00 0.00 2.71
439 440 7.337184 TCCAAAACAGTACATGAACAGTAAACA 59.663 33.333 0.00 0.00 0.00 2.83
440 441 7.642586 GTCCAAAACAGTACATGAACAGTAAAC 59.357 37.037 0.00 0.00 0.00 2.01
441 442 7.201750 GGTCCAAAACAGTACATGAACAGTAAA 60.202 37.037 0.00 0.00 0.00 2.01
442 443 6.261381 GGTCCAAAACAGTACATGAACAGTAA 59.739 38.462 0.00 0.00 0.00 2.24
443 444 5.761234 GGTCCAAAACAGTACATGAACAGTA 59.239 40.000 0.00 0.00 0.00 2.74
444 445 4.578928 GGTCCAAAACAGTACATGAACAGT 59.421 41.667 0.00 0.00 0.00 3.55
445 446 4.319477 CGGTCCAAAACAGTACATGAACAG 60.319 45.833 0.00 0.00 0.00 3.16
446 447 3.562141 CGGTCCAAAACAGTACATGAACA 59.438 43.478 0.00 0.00 0.00 3.18
447 448 3.810941 TCGGTCCAAAACAGTACATGAAC 59.189 43.478 0.00 0.00 0.00 3.18
448 449 4.074627 TCGGTCCAAAACAGTACATGAA 57.925 40.909 0.00 0.00 0.00 2.57
449 450 3.755112 TCGGTCCAAAACAGTACATGA 57.245 42.857 0.00 0.00 0.00 3.07
450 451 5.153513 CAAATCGGTCCAAAACAGTACATG 58.846 41.667 0.00 0.00 0.00 3.21
451 452 4.825085 ACAAATCGGTCCAAAACAGTACAT 59.175 37.500 0.00 0.00 0.00 2.29
452 453 4.200874 ACAAATCGGTCCAAAACAGTACA 58.799 39.130 0.00 0.00 0.00 2.90
453 454 4.779987 GACAAATCGGTCCAAAACAGTAC 58.220 43.478 0.00 0.00 0.00 2.73
455 456 3.982576 GACAAATCGGTCCAAAACAGT 57.017 42.857 0.00 0.00 0.00 3.55
464 465 5.699458 TCTCAGTAAAAAGGACAAATCGGTC 59.301 40.000 0.00 0.00 37.06 4.79
465 466 5.617252 TCTCAGTAAAAAGGACAAATCGGT 58.383 37.500 0.00 0.00 0.00 4.69
466 467 5.390991 GCTCTCAGTAAAAAGGACAAATCGG 60.391 44.000 0.00 0.00 0.00 4.18
467 468 5.409826 AGCTCTCAGTAAAAAGGACAAATCG 59.590 40.000 0.00 0.00 0.00 3.34
468 469 6.606768 CAGCTCTCAGTAAAAAGGACAAATC 58.393 40.000 0.00 0.00 0.00 2.17
469 470 5.048434 GCAGCTCTCAGTAAAAAGGACAAAT 60.048 40.000 0.00 0.00 0.00 2.32
470 471 4.275936 GCAGCTCTCAGTAAAAAGGACAAA 59.724 41.667 0.00 0.00 0.00 2.83
471 472 3.815401 GCAGCTCTCAGTAAAAAGGACAA 59.185 43.478 0.00 0.00 0.00 3.18
472 473 3.071602 AGCAGCTCTCAGTAAAAAGGACA 59.928 43.478 0.00 0.00 0.00 4.02
473 474 3.669536 AGCAGCTCTCAGTAAAAAGGAC 58.330 45.455 0.00 0.00 0.00 3.85
474 475 5.483685 TTAGCAGCTCTCAGTAAAAAGGA 57.516 39.130 0.00 0.00 0.00 3.36
475 476 6.560253 TTTTAGCAGCTCTCAGTAAAAAGG 57.440 37.500 0.00 0.00 0.00 3.11
476 477 9.928236 GATATTTTAGCAGCTCTCAGTAAAAAG 57.072 33.333 0.00 0.00 0.00 2.27
477 478 8.893727 GGATATTTTAGCAGCTCTCAGTAAAAA 58.106 33.333 0.00 0.00 0.00 1.94
478 479 8.046708 TGGATATTTTAGCAGCTCTCAGTAAAA 58.953 33.333 0.00 0.00 0.00 1.52
479 480 7.564793 TGGATATTTTAGCAGCTCTCAGTAAA 58.435 34.615 0.00 0.00 0.00 2.01
480 481 7.124573 TGGATATTTTAGCAGCTCTCAGTAA 57.875 36.000 0.00 0.00 0.00 2.24
481 482 6.731292 TGGATATTTTAGCAGCTCTCAGTA 57.269 37.500 0.00 0.00 0.00 2.74
482 483 5.620738 TGGATATTTTAGCAGCTCTCAGT 57.379 39.130 0.00 0.00 0.00 3.41
483 484 6.932356 TTTGGATATTTTAGCAGCTCTCAG 57.068 37.500 0.00 0.00 0.00 3.35
484 485 7.012704 GTCATTTGGATATTTTAGCAGCTCTCA 59.987 37.037 0.00 0.00 0.00 3.27
485 486 7.228308 AGTCATTTGGATATTTTAGCAGCTCTC 59.772 37.037 0.00 0.00 0.00 3.20
486 487 7.059156 AGTCATTTGGATATTTTAGCAGCTCT 58.941 34.615 0.00 0.00 0.00 4.09
487 488 7.269477 AGTCATTTGGATATTTTAGCAGCTC 57.731 36.000 0.00 0.00 0.00 4.09
488 489 7.340232 TCAAGTCATTTGGATATTTTAGCAGCT 59.660 33.333 0.00 0.00 37.39 4.24
489 490 7.483307 TCAAGTCATTTGGATATTTTAGCAGC 58.517 34.615 0.00 0.00 37.39 5.25
490 491 9.859427 TTTCAAGTCATTTGGATATTTTAGCAG 57.141 29.630 0.00 0.00 37.39 4.24
498 499 9.374838 GCTTCAAATTTCAAGTCATTTGGATAT 57.625 29.630 3.65 0.00 39.76 1.63
499 500 7.541783 CGCTTCAAATTTCAAGTCATTTGGATA 59.458 33.333 3.65 0.00 39.76 2.59
500 501 6.366877 CGCTTCAAATTTCAAGTCATTTGGAT 59.633 34.615 3.65 0.00 39.76 3.41
501 502 5.691305 CGCTTCAAATTTCAAGTCATTTGGA 59.309 36.000 3.65 0.00 39.76 3.53
502 503 5.107375 CCGCTTCAAATTTCAAGTCATTTGG 60.107 40.000 3.65 0.00 39.76 3.28
503 504 5.107375 CCCGCTTCAAATTTCAAGTCATTTG 60.107 40.000 3.65 0.00 40.39 2.32
504 505 4.990426 CCCGCTTCAAATTTCAAGTCATTT 59.010 37.500 3.65 0.00 0.00 2.32
505 506 4.559153 CCCGCTTCAAATTTCAAGTCATT 58.441 39.130 3.65 0.00 0.00 2.57
506 507 3.614870 GCCCGCTTCAAATTTCAAGTCAT 60.615 43.478 3.65 0.00 0.00 3.06
507 508 2.288152 GCCCGCTTCAAATTTCAAGTCA 60.288 45.455 3.65 0.00 0.00 3.41
508 509 2.328473 GCCCGCTTCAAATTTCAAGTC 58.672 47.619 3.65 0.00 0.00 3.01
509 510 1.000843 GGCCCGCTTCAAATTTCAAGT 59.999 47.619 3.65 0.00 0.00 3.16
510 511 1.273327 AGGCCCGCTTCAAATTTCAAG 59.727 47.619 0.00 0.00 0.00 3.02
511 512 1.272212 GAGGCCCGCTTCAAATTTCAA 59.728 47.619 0.00 0.00 0.00 2.69
512 513 0.887933 GAGGCCCGCTTCAAATTTCA 59.112 50.000 0.00 0.00 0.00 2.69
513 514 0.887933 TGAGGCCCGCTTCAAATTTC 59.112 50.000 0.00 0.00 0.00 2.17
514 515 0.603065 GTGAGGCCCGCTTCAAATTT 59.397 50.000 0.00 0.00 33.88 1.82
515 516 1.586154 CGTGAGGCCCGCTTCAAATT 61.586 55.000 0.00 0.00 33.88 1.82
516 517 2.040544 CGTGAGGCCCGCTTCAAAT 61.041 57.895 0.00 0.00 33.88 2.32
517 518 2.668212 CGTGAGGCCCGCTTCAAA 60.668 61.111 0.00 0.00 33.88 2.69
524 525 1.656818 AATTTGATGCGTGAGGCCCG 61.657 55.000 0.00 0.00 42.61 6.13
525 526 0.179129 CAATTTGATGCGTGAGGCCC 60.179 55.000 0.00 0.00 42.61 5.80
526 527 0.527565 ACAATTTGATGCGTGAGGCC 59.472 50.000 2.79 0.00 42.61 5.19
527 528 1.470098 AGACAATTTGATGCGTGAGGC 59.530 47.619 2.79 0.00 43.96 4.70
528 529 4.651994 GTTAGACAATTTGATGCGTGAGG 58.348 43.478 2.79 0.00 0.00 3.86
529 530 4.326205 CGTTAGACAATTTGATGCGTGAG 58.674 43.478 2.79 0.00 0.00 3.51
530 531 3.424302 GCGTTAGACAATTTGATGCGTGA 60.424 43.478 2.79 0.00 0.00 4.35
531 532 2.840176 GCGTTAGACAATTTGATGCGTG 59.160 45.455 2.79 0.00 0.00 5.34
532 533 2.482336 TGCGTTAGACAATTTGATGCGT 59.518 40.909 2.79 0.00 0.00 5.24
533 534 2.840176 GTGCGTTAGACAATTTGATGCG 59.160 45.455 2.79 2.09 0.00 4.73
534 535 3.820689 TGTGCGTTAGACAATTTGATGC 58.179 40.909 2.79 0.00 0.00 3.91
535 536 6.746104 TTTTGTGCGTTAGACAATTTGATG 57.254 33.333 2.79 0.00 33.41 3.07
580 581 7.013178 ACCCGGTTAGAAAAGAATTCGTAAAAA 59.987 33.333 0.00 0.00 0.00 1.94
581 582 6.486320 ACCCGGTTAGAAAAGAATTCGTAAAA 59.514 34.615 0.00 0.00 0.00 1.52
582 583 5.997129 ACCCGGTTAGAAAAGAATTCGTAAA 59.003 36.000 0.00 0.00 0.00 2.01
583 584 5.409214 CACCCGGTTAGAAAAGAATTCGTAA 59.591 40.000 0.00 0.00 0.00 3.18
584 585 4.931002 CACCCGGTTAGAAAAGAATTCGTA 59.069 41.667 0.00 0.00 0.00 3.43
585 586 3.749609 CACCCGGTTAGAAAAGAATTCGT 59.250 43.478 0.00 0.00 0.00 3.85
586 587 3.425758 GCACCCGGTTAGAAAAGAATTCG 60.426 47.826 0.00 0.00 0.00 3.34
587 588 3.504520 TGCACCCGGTTAGAAAAGAATTC 59.495 43.478 0.00 0.00 0.00 2.17
588 589 3.492337 TGCACCCGGTTAGAAAAGAATT 58.508 40.909 0.00 0.00 0.00 2.17
589 590 3.081804 CTGCACCCGGTTAGAAAAGAAT 58.918 45.455 0.00 0.00 0.00 2.40
590 591 2.105134 TCTGCACCCGGTTAGAAAAGAA 59.895 45.455 0.00 0.00 0.00 2.52
591 592 1.695242 TCTGCACCCGGTTAGAAAAGA 59.305 47.619 0.00 0.00 0.00 2.52
592 593 2.178912 TCTGCACCCGGTTAGAAAAG 57.821 50.000 0.00 0.00 0.00 2.27
593 594 2.039216 TCATCTGCACCCGGTTAGAAAA 59.961 45.455 0.00 0.00 0.00 2.29
594 595 1.626321 TCATCTGCACCCGGTTAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
595 596 1.207089 CTCATCTGCACCCGGTTAGAA 59.793 52.381 0.00 0.00 0.00 2.10
596 597 0.824109 CTCATCTGCACCCGGTTAGA 59.176 55.000 0.00 4.22 0.00 2.10
597 598 0.537188 ACTCATCTGCACCCGGTTAG 59.463 55.000 0.00 0.00 0.00 2.34
598 599 0.535335 GACTCATCTGCACCCGGTTA 59.465 55.000 0.00 0.00 0.00 2.85
599 600 1.194781 AGACTCATCTGCACCCGGTT 61.195 55.000 0.00 0.00 32.29 4.44
600 601 1.610673 AGACTCATCTGCACCCGGT 60.611 57.895 0.00 0.00 32.29 5.28
601 602 1.153489 CAGACTCATCTGCACCCGG 60.153 63.158 0.00 0.00 45.83 5.73
602 603 4.509756 CAGACTCATCTGCACCCG 57.490 61.111 0.00 0.00 45.83 5.28
609 610 0.904865 TTCGGTGCCCAGACTCATCT 60.905 55.000 0.00 0.00 34.57 2.90
610 611 0.036388 TTTCGGTGCCCAGACTCATC 60.036 55.000 0.00 0.00 0.00 2.92
611 612 0.321653 GTTTCGGTGCCCAGACTCAT 60.322 55.000 0.00 0.00 0.00 2.90
612 613 1.070786 GTTTCGGTGCCCAGACTCA 59.929 57.895 0.00 0.00 0.00 3.41
613 614 2.027625 CGTTTCGGTGCCCAGACTC 61.028 63.158 0.00 0.00 0.00 3.36
614 615 2.030562 CGTTTCGGTGCCCAGACT 59.969 61.111 0.00 0.00 0.00 3.24
615 616 3.723348 GCGTTTCGGTGCCCAGAC 61.723 66.667 0.00 0.00 0.00 3.51
621 622 2.047560 AGTAGGGCGTTTCGGTGC 60.048 61.111 0.00 0.00 0.00 5.01
622 623 1.804326 CGAGTAGGGCGTTTCGGTG 60.804 63.158 6.06 0.00 0.00 4.94
623 624 1.930908 CTCGAGTAGGGCGTTTCGGT 61.931 60.000 3.62 0.00 34.08 4.69
624 625 1.226603 CTCGAGTAGGGCGTTTCGG 60.227 63.158 3.62 2.67 34.08 4.30
625 626 1.226603 CCTCGAGTAGGGCGTTTCG 60.227 63.158 12.31 7.26 42.32 3.46
626 627 4.808649 CCTCGAGTAGGGCGTTTC 57.191 61.111 12.31 0.00 42.32 2.78
633 634 1.497161 AACCATTCCCCTCGAGTAGG 58.503 55.000 12.31 11.92 46.09 3.18
634 635 3.270877 CAAAACCATTCCCCTCGAGTAG 58.729 50.000 12.31 1.85 0.00 2.57
635 636 2.026636 CCAAAACCATTCCCCTCGAGTA 60.027 50.000 12.31 0.00 0.00 2.59
636 637 1.271926 CCAAAACCATTCCCCTCGAGT 60.272 52.381 12.31 0.00 0.00 4.18
637 638 1.463674 CCAAAACCATTCCCCTCGAG 58.536 55.000 5.13 5.13 0.00 4.04
638 639 0.610785 GCCAAAACCATTCCCCTCGA 60.611 55.000 0.00 0.00 0.00 4.04
639 640 1.604147 GGCCAAAACCATTCCCCTCG 61.604 60.000 0.00 0.00 0.00 4.63
640 641 0.544120 TGGCCAAAACCATTCCCCTC 60.544 55.000 0.61 0.00 33.75 4.30
641 642 0.835971 GTGGCCAAAACCATTCCCCT 60.836 55.000 7.24 0.00 43.01 4.79
642 643 1.676968 GTGGCCAAAACCATTCCCC 59.323 57.895 7.24 0.00 43.01 4.81
643 644 1.291906 CGTGGCCAAAACCATTCCC 59.708 57.895 7.24 0.00 43.01 3.97
644 645 0.391228 AACGTGGCCAAAACCATTCC 59.609 50.000 7.24 0.00 43.01 3.01
645 646 3.372660 TTAACGTGGCCAAAACCATTC 57.627 42.857 7.24 0.00 43.01 2.67
646 647 3.070302 ACATTAACGTGGCCAAAACCATT 59.930 39.130 7.24 0.00 43.01 3.16
647 648 2.630580 ACATTAACGTGGCCAAAACCAT 59.369 40.909 7.24 0.00 43.01 3.55
648 649 2.032620 ACATTAACGTGGCCAAAACCA 58.967 42.857 7.24 0.00 37.38 3.67
649 650 2.804697 ACATTAACGTGGCCAAAACC 57.195 45.000 7.24 0.00 0.00 3.27
650 651 4.677832 CACTTACATTAACGTGGCCAAAAC 59.322 41.667 7.24 0.00 0.00 2.43
651 652 4.261656 CCACTTACATTAACGTGGCCAAAA 60.262 41.667 7.24 0.00 40.27 2.44
652 653 3.253677 CCACTTACATTAACGTGGCCAAA 59.746 43.478 7.24 0.00 40.27 3.28
653 654 2.814919 CCACTTACATTAACGTGGCCAA 59.185 45.455 7.24 0.00 40.27 4.52
654 655 2.038689 TCCACTTACATTAACGTGGCCA 59.961 45.455 0.00 0.00 44.99 5.36
655 656 2.702261 TCCACTTACATTAACGTGGCC 58.298 47.619 0.00 0.00 44.99 5.36
656 657 3.499157 TGTTCCACTTACATTAACGTGGC 59.501 43.478 0.00 0.00 44.99 5.01
657 658 5.180492 ACATGTTCCACTTACATTAACGTGG 59.820 40.000 0.00 0.00 46.35 4.94
658 659 6.236017 ACATGTTCCACTTACATTAACGTG 57.764 37.500 0.00 0.00 40.94 4.49
659 660 6.870971 AACATGTTCCACTTACATTAACGT 57.129 33.333 4.92 0.00 34.11 3.99
660 661 7.858382 TGAAAACATGTTCCACTTACATTAACG 59.142 33.333 12.39 0.00 34.11 3.18
661 662 8.964150 GTGAAAACATGTTCCACTTACATTAAC 58.036 33.333 24.90 9.86 34.11 2.01
662 663 8.908903 AGTGAAAACATGTTCCACTTACATTAA 58.091 29.630 27.31 4.42 34.11 1.40
663 664 8.458573 AGTGAAAACATGTTCCACTTACATTA 57.541 30.769 27.31 1.31 34.11 1.90
664 665 7.346751 AGTGAAAACATGTTCCACTTACATT 57.653 32.000 27.31 11.74 34.11 2.71
665 666 6.959639 AGTGAAAACATGTTCCACTTACAT 57.040 33.333 27.31 14.37 36.70 2.29
666 667 6.767524 AAGTGAAAACATGTTCCACTTACA 57.232 33.333 34.13 17.75 32.25 2.41
667 668 9.233232 CTTTAAGTGAAAACATGTTCCACTTAC 57.767 33.333 35.68 21.81 34.52 2.34
668 669 7.918562 GCTTTAAGTGAAAACATGTTCCACTTA 59.081 33.333 34.12 34.12 34.12 2.24
669 670 6.756542 GCTTTAAGTGAAAACATGTTCCACTT 59.243 34.615 35.40 35.40 35.26 3.16
670 671 6.096846 AGCTTTAAGTGAAAACATGTTCCACT 59.903 34.615 27.31 27.31 0.00 4.00
671 672 6.273071 AGCTTTAAGTGAAAACATGTTCCAC 58.727 36.000 24.85 24.85 0.00 4.02
672 673 6.463995 AGCTTTAAGTGAAAACATGTTCCA 57.536 33.333 12.39 10.31 0.00 3.53
675 676 9.626045 GCTATAAGCTTTAAGTGAAAACATGTT 57.374 29.630 3.20 4.92 38.45 2.71
707 708 9.008965 AGGTTTGCTTTAAGTGAAAACATTTTT 57.991 25.926 15.94 0.00 33.42 1.94
710 711 9.660180 TTTAGGTTTGCTTTAAGTGAAAACATT 57.340 25.926 15.94 9.65 33.42 2.71
740 750 3.603158 TCGCACTTGGCTAGTATTCAA 57.397 42.857 0.24 0.00 41.67 2.69
741 751 3.603158 TTCGCACTTGGCTAGTATTCA 57.397 42.857 0.24 0.00 41.67 2.57
742 752 3.063588 GGTTTCGCACTTGGCTAGTATTC 59.936 47.826 0.24 0.00 41.67 1.75
743 753 3.007635 GGTTTCGCACTTGGCTAGTATT 58.992 45.455 0.24 0.00 41.67 1.89
744 754 2.027561 TGGTTTCGCACTTGGCTAGTAT 60.028 45.455 0.24 0.00 41.67 2.12
745 755 1.345089 TGGTTTCGCACTTGGCTAGTA 59.655 47.619 0.24 0.00 41.67 1.82
746 756 0.107831 TGGTTTCGCACTTGGCTAGT 59.892 50.000 0.00 0.00 41.67 2.57
747 757 0.517316 GTGGTTTCGCACTTGGCTAG 59.483 55.000 0.00 0.00 41.67 3.42
748 758 0.887387 GGTGGTTTCGCACTTGGCTA 60.887 55.000 0.00 0.00 41.67 3.93
775 785 4.157840 GGGGTCAAAACTAATGGCTAACAG 59.842 45.833 0.00 0.00 0.00 3.16
778 788 3.703921 GGGGGTCAAAACTAATGGCTAA 58.296 45.455 0.00 0.00 0.00 3.09
910 979 2.603473 TGCTCTGCCCTACCGTGT 60.603 61.111 0.00 0.00 0.00 4.49
916 985 1.374947 GGTGTTGTGCTCTGCCCTA 59.625 57.895 0.00 0.00 0.00 3.53
960 1032 1.153349 GATCCACTGGGCTCGGTTC 60.153 63.158 0.00 0.00 0.00 3.62
1028 1114 3.169155 AAGCACAGCACGAGGAGCA 62.169 57.895 0.00 0.00 0.00 4.26
1110 1205 4.954118 TCCGTGACCAGCCACCCT 62.954 66.667 0.00 0.00 33.67 4.34
1202 1301 7.827015 ACACGTGTGTTGGTATGTATGCATAC 61.827 42.308 26.72 26.72 46.52 2.39
1257 1388 7.083875 TGTCAGTCAAGAAACTAAAAACAGG 57.916 36.000 0.00 0.00 0.00 4.00
1599 1742 8.982723 AGTATTATCTTTACCTGCAAGAAGAGA 58.017 33.333 0.00 0.00 33.94 3.10
1650 1939 3.189287 GCTTGCTAGCATACACTTGTTGT 59.811 43.478 20.13 0.00 46.95 3.32
1673 1962 2.783284 GTCTGTTTTGAACGCACATGTG 59.217 45.455 21.83 21.83 0.00 3.21
1736 2504 2.158957 TGCGCTAGTCAAAATCCCTAGG 60.159 50.000 9.73 0.06 30.99 3.02
2018 2794 2.674380 CAAGTGGAGCAGTGGCCC 60.674 66.667 0.00 0.00 42.56 5.80
2095 2974 2.552743 GTGATCTCCACATGATGCATGG 59.447 50.000 2.46 0.00 45.16 3.66
2368 3388 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
2369 3389 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
2370 3390 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
2371 3391 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
2372 3392 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
2373 3393 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
2374 3394 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
2375 3395 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
2376 3396 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
2377 3397 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
2378 3398 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
2379 3399 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
2510 3547 4.803098 ACGTATTCCTAACTTGCAGAGT 57.197 40.909 0.00 0.00 41.47 3.24
2516 3553 8.765219 CCAAGAATGATACGTATTCCTAACTTG 58.235 37.037 9.92 17.32 35.62 3.16
2724 3949 1.551883 GCCCATTTGAATGCCTTGTCT 59.448 47.619 0.00 0.00 35.08 3.41
2795 4020 3.265791 ACAGTTGAGCCGATCTTTGATC 58.734 45.455 0.00 0.00 0.00 2.92
2832 4057 4.066139 ATGCCAAGGTCAGCCCCC 62.066 66.667 0.00 0.00 34.57 5.40
3114 4358 2.782222 GGCGTACCTGGATGCGAGA 61.782 63.158 0.00 0.00 31.71 4.04
3186 4430 3.414759 TTTAGGCTCTCCAGGGATACA 57.585 47.619 0.00 0.00 33.62 2.29
3232 4476 0.247736 GATGAGTGCTTCCTGACGGT 59.752 55.000 0.00 0.00 0.00 4.83
3330 4574 0.249447 GCACATCGATGACGGATCCA 60.249 55.000 31.33 0.00 40.21 3.41
3408 4652 5.645497 GCTTGAGTAGTTGGTCTTGATGAAT 59.355 40.000 0.00 0.00 0.00 2.57
3483 4728 9.816787 TCTAAAACCAAAAGGGAATAGTTACAT 57.183 29.630 0.00 0.00 41.15 2.29
3680 4956 5.721480 TCACATTCTTGAGAGTCCAATAGGA 59.279 40.000 0.00 0.00 43.21 2.94
3733 5009 9.177608 CTTTTCAAGGAGATGTATCCATTGTTA 57.822 33.333 0.00 0.00 42.26 2.41
3936 6520 5.044105 ACCCAAGCCTAAACTTATGGAGAAT 60.044 40.000 0.00 0.00 0.00 2.40
4086 6671 6.869913 TGCTTCCAAGAAAATAGCTTTTGATG 59.130 34.615 0.00 0.00 34.73 3.07
4100 6685 3.698539 TCACACACAATTGCTTCCAAGAA 59.301 39.130 5.05 0.00 33.80 2.52
4102 6687 3.713858 TCACACACAATTGCTTCCAAG 57.286 42.857 5.05 0.00 33.80 3.61
4125 6734 4.630069 GTCCAACGTACATGCATACTCTTT 59.370 41.667 0.00 0.00 0.00 2.52
4126 6735 4.181578 GTCCAACGTACATGCATACTCTT 58.818 43.478 0.00 0.00 0.00 2.85
4127 6736 3.430374 GGTCCAACGTACATGCATACTCT 60.430 47.826 0.00 0.00 0.00 3.24
4128 6737 2.864343 GGTCCAACGTACATGCATACTC 59.136 50.000 0.00 0.00 0.00 2.59
4129 6738 2.235155 TGGTCCAACGTACATGCATACT 59.765 45.455 0.00 0.00 0.00 2.12
4130 6739 2.623535 TGGTCCAACGTACATGCATAC 58.376 47.619 0.00 0.00 0.00 2.39
4131 6740 3.552132 ATGGTCCAACGTACATGCATA 57.448 42.857 0.00 0.00 0.00 3.14
4132 6741 2.418368 ATGGTCCAACGTACATGCAT 57.582 45.000 0.00 0.00 0.00 3.96
4133 6742 1.809547 CAATGGTCCAACGTACATGCA 59.190 47.619 0.00 0.00 0.00 3.96
4134 6743 1.132262 CCAATGGTCCAACGTACATGC 59.868 52.381 0.00 0.00 0.00 4.06
4135 6744 1.742831 CCCAATGGTCCAACGTACATG 59.257 52.381 0.00 0.00 0.00 3.21
4136 6745 1.340600 CCCCAATGGTCCAACGTACAT 60.341 52.381 0.00 0.00 0.00 2.29
4137 6746 0.037017 CCCCAATGGTCCAACGTACA 59.963 55.000 0.00 0.00 0.00 2.90
4138 6747 0.325602 TCCCCAATGGTCCAACGTAC 59.674 55.000 0.00 0.00 34.77 3.67
4139 6748 1.065053 CATCCCCAATGGTCCAACGTA 60.065 52.381 0.00 0.00 34.77 3.57
4140 6749 0.323360 CATCCCCAATGGTCCAACGT 60.323 55.000 0.00 0.00 34.77 3.99
4141 6750 2.492418 CATCCCCAATGGTCCAACG 58.508 57.895 0.00 0.00 34.77 4.10
4199 6808 3.874543 TGCCACGTCATTATCCATTACAC 59.125 43.478 0.00 0.00 0.00 2.90
4264 6874 5.789574 AATCTAAATAGTTGACCCCCACA 57.210 39.130 0.00 0.00 0.00 4.17
4343 6953 9.190858 CCATTCTGATCTAGATTTTCTAGTTCG 57.809 37.037 6.70 8.67 45.11 3.95
4358 6968 7.830697 TGTGTGTATTGATTTCCATTCTGATCT 59.169 33.333 0.00 0.00 0.00 2.75
4546 7160 6.287589 TCAGAGTTCTTCCCTATTCTTGTC 57.712 41.667 0.00 0.00 0.00 3.18
4579 7194 4.584325 AGAAAAGCAACATTCAAGGTGCTA 59.416 37.500 6.94 0.00 31.89 3.49
4586 7201 6.757947 CAGGAAGAAAGAAAAGCAACATTCAA 59.242 34.615 0.00 0.00 0.00 2.69
4623 7238 6.409704 AGCTCTACATCATGTTTGCTTTCTA 58.590 36.000 0.00 0.00 29.59 2.10
4668 7283 3.061848 CGGTTGTGGGATGGCACC 61.062 66.667 0.00 0.00 0.00 5.01
4718 7333 0.973632 ACGTGACTTGTATGAGCCCA 59.026 50.000 0.00 0.00 0.00 5.36
4725 7340 3.508762 CGCTTTAGGACGTGACTTGTAT 58.491 45.455 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.