Multiple sequence alignment - TraesCS5B01G063200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G063200 chr5B 100.000 2452 0 0 1 2452 70904463 70902012 0.000000e+00 4529.0
1 TraesCS5B01G063200 chr5B 86.943 628 63 9 996 1606 376514251 376514876 0.000000e+00 688.0
2 TraesCS5B01G063200 chr1B 91.807 830 59 7 1630 2452 668255898 668256725 0.000000e+00 1147.0
3 TraesCS5B01G063200 chr1B 82.220 1288 146 29 627 1859 599266301 599267560 0.000000e+00 1033.0
4 TraesCS5B01G063200 chr1B 83.397 1054 108 29 909 1912 680928601 680927565 0.000000e+00 915.0
5 TraesCS5B01G063200 chr1B 83.234 1008 115 23 628 1605 61378888 61377905 0.000000e+00 876.0
6 TraesCS5B01G063200 chr1B 90.663 332 26 4 1958 2288 61376954 61376627 1.040000e-118 436.0
7 TraesCS5B01G063200 chr1B 83.951 486 34 13 1979 2445 599267575 599268035 2.250000e-115 425.0
8 TraesCS5B01G063200 chr1B 88.772 285 30 2 1587 1869 61377238 61376954 5.020000e-92 348.0
9 TraesCS5B01G063200 chr6B 82.984 1287 157 33 630 1867 703850168 703851441 0.000000e+00 1107.0
10 TraesCS5B01G063200 chr6B 88.696 575 38 13 1088 1637 227629268 227628696 0.000000e+00 676.0
11 TraesCS5B01G063200 chr6B 79.556 450 47 13 630 1074 227638235 227637826 1.860000e-71 279.0
12 TraesCS5B01G063200 chr6B 81.173 324 42 10 310 626 672287181 672287492 2.440000e-60 243.0
13 TraesCS5B01G063200 chr6B 81.013 316 45 11 318 626 583615533 583615226 1.130000e-58 237.0
14 TraesCS5B01G063200 chr6B 91.617 167 13 1 2286 2452 227628388 227628223 1.900000e-56 230.0
15 TraesCS5B01G063200 chr6B 85.714 196 15 5 4 199 514828537 514828719 6.920000e-46 195.0
16 TraesCS5B01G063200 chr3D 82.671 1258 133 30 629 1806 354004241 354002989 0.000000e+00 1037.0
17 TraesCS5B01G063200 chr3D 83.792 944 100 22 907 1806 5461608 5462542 0.000000e+00 846.0
18 TraesCS5B01G063200 chr3D 87.565 193 22 1 6 196 135588730 135588922 3.170000e-54 222.0
19 TraesCS5B01G063200 chr7A 83.627 1136 132 32 629 1733 74974729 74973617 0.000000e+00 1018.0
20 TraesCS5B01G063200 chr7A 88.281 512 37 7 1960 2452 12342760 12343267 2.100000e-165 592.0
21 TraesCS5B01G063200 chr7A 84.568 486 43 7 1987 2452 709015586 709015113 1.030000e-123 453.0
22 TraesCS5B01G063200 chr3B 86.359 931 98 17 948 1859 40911465 40912385 0.000000e+00 989.0
23 TraesCS5B01G063200 chr3B 84.553 492 33 20 1979 2452 40912400 40912866 4.810000e-122 448.0
24 TraesCS5B01G063200 chr4D 83.799 1037 121 24 628 1637 445488353 445489369 0.000000e+00 941.0
25 TraesCS5B01G063200 chr4D 81.308 321 45 11 313 626 36489591 36489903 1.880000e-61 246.0
26 TraesCS5B01G063200 chr7D 84.515 846 83 30 1091 1912 12982256 12983077 0.000000e+00 793.0
27 TraesCS5B01G063200 chr7D 88.867 512 33 9 1960 2452 12983015 12983521 2.080000e-170 608.0
28 TraesCS5B01G063200 chr7D 78.816 321 43 14 313 626 203995264 203994962 2.490000e-45 193.0
29 TraesCS5B01G063200 chr7D 77.124 306 49 12 331 629 3088712 3089003 9.080000e-35 158.0
30 TraesCS5B01G063200 chr7D 93.651 63 4 0 111 173 10634357 10634419 7.220000e-16 95.3
31 TraesCS5B01G063200 chr5A 86.103 662 49 23 1 629 255620094 255619443 0.000000e+00 673.0
32 TraesCS5B01G063200 chr7B 90.762 433 37 3 2023 2452 91678158 91678590 2.110000e-160 575.0
33 TraesCS5B01G063200 chr7B 85.794 359 37 8 993 1340 91677593 91677948 3.850000e-98 368.0
34 TraesCS5B01G063200 chr1D 85.072 489 41 9 1984 2452 406566555 406567031 1.030000e-128 470.0
35 TraesCS5B01G063200 chr6D 81.620 321 44 11 313 626 428627452 428627764 4.050000e-63 252.0
36 TraesCS5B01G063200 chr2D 81.677 322 42 13 313 626 142002934 142003246 4.050000e-63 252.0
37 TraesCS5B01G063200 chr1A 88.889 198 20 1 4 199 485030315 485030118 2.440000e-60 243.0
38 TraesCS5B01G063200 chr3A 88.384 198 21 1 4 199 467158394 467158197 1.130000e-58 237.0
39 TraesCS5B01G063200 chr2A 86.979 192 23 1 10 199 509157124 509156933 5.310000e-52 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G063200 chr5B 70902012 70904463 2451 True 4529.000000 4529 100.000000 1 2452 1 chr5B.!!$R1 2451
1 TraesCS5B01G063200 chr5B 376514251 376514876 625 False 688.000000 688 86.943000 996 1606 1 chr5B.!!$F1 610
2 TraesCS5B01G063200 chr1B 668255898 668256725 827 False 1147.000000 1147 91.807000 1630 2452 1 chr1B.!!$F1 822
3 TraesCS5B01G063200 chr1B 680927565 680928601 1036 True 915.000000 915 83.397000 909 1912 1 chr1B.!!$R1 1003
4 TraesCS5B01G063200 chr1B 599266301 599268035 1734 False 729.000000 1033 83.085500 627 2445 2 chr1B.!!$F2 1818
5 TraesCS5B01G063200 chr1B 61376627 61378888 2261 True 553.333333 876 87.556333 628 2288 3 chr1B.!!$R2 1660
6 TraesCS5B01G063200 chr6B 703850168 703851441 1273 False 1107.000000 1107 82.984000 630 1867 1 chr6B.!!$F3 1237
7 TraesCS5B01G063200 chr6B 227628223 227629268 1045 True 453.000000 676 90.156500 1088 2452 2 chr6B.!!$R3 1364
8 TraesCS5B01G063200 chr3D 354002989 354004241 1252 True 1037.000000 1037 82.671000 629 1806 1 chr3D.!!$R1 1177
9 TraesCS5B01G063200 chr3D 5461608 5462542 934 False 846.000000 846 83.792000 907 1806 1 chr3D.!!$F1 899
10 TraesCS5B01G063200 chr7A 74973617 74974729 1112 True 1018.000000 1018 83.627000 629 1733 1 chr7A.!!$R1 1104
11 TraesCS5B01G063200 chr7A 12342760 12343267 507 False 592.000000 592 88.281000 1960 2452 1 chr7A.!!$F1 492
12 TraesCS5B01G063200 chr3B 40911465 40912866 1401 False 718.500000 989 85.456000 948 2452 2 chr3B.!!$F1 1504
13 TraesCS5B01G063200 chr4D 445488353 445489369 1016 False 941.000000 941 83.799000 628 1637 1 chr4D.!!$F2 1009
14 TraesCS5B01G063200 chr7D 12982256 12983521 1265 False 700.500000 793 86.691000 1091 2452 2 chr7D.!!$F3 1361
15 TraesCS5B01G063200 chr5A 255619443 255620094 651 True 673.000000 673 86.103000 1 629 1 chr5A.!!$R1 628
16 TraesCS5B01G063200 chr7B 91677593 91678590 997 False 471.500000 575 88.278000 993 2452 2 chr7B.!!$F1 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 558 0.108186 GTGTGCAGGTCCATCGATCA 60.108 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1936 0.03601 ACAGCAGCATCACACTACCC 60.036 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.151202 GCAAAATCCTCAACTCCGTCA 58.849 47.619 0.00 0.00 0.00 4.35
46 47 1.222936 GTCACCCAGATCCAGCAGG 59.777 63.158 0.00 0.00 0.00 4.85
71 72 3.878778 CTTCCCACATAAACTCCTGGAG 58.121 50.000 22.00 22.00 35.52 3.86
76 77 1.899814 ACATAAACTCCTGGAGCGACA 59.100 47.619 23.43 6.96 32.04 4.35
77 78 2.093973 ACATAAACTCCTGGAGCGACAG 60.094 50.000 23.43 13.06 38.21 3.51
138 141 0.601046 GCCAAAAGGCCAGAAAGTGC 60.601 55.000 5.01 0.00 0.00 4.40
156 159 1.480137 TGCTTATTCGGCCCATTTTGG 59.520 47.619 0.00 0.00 37.25 3.28
183 186 1.303643 GTTTCTCTGTGGCCTGGGG 60.304 63.158 3.32 0.00 0.00 4.96
209 212 2.654749 GGGCTACTGACCAAAATTGC 57.345 50.000 0.00 0.00 42.34 3.56
245 248 1.152881 GCGGGGGAGCTTGATTGAT 60.153 57.895 0.00 0.00 0.00 2.57
247 250 0.820891 CGGGGGAGCTTGATTGATGG 60.821 60.000 0.00 0.00 0.00 3.51
254 257 3.276857 GAGCTTGATTGATGGCAGAGAA 58.723 45.455 0.00 0.00 0.00 2.87
255 258 3.693085 GAGCTTGATTGATGGCAGAGAAA 59.307 43.478 0.00 0.00 0.00 2.52
256 259 3.442977 AGCTTGATTGATGGCAGAGAAAC 59.557 43.478 0.00 0.00 0.00 2.78
257 260 3.442977 GCTTGATTGATGGCAGAGAAACT 59.557 43.478 0.00 0.00 0.00 2.66
258 261 4.438472 GCTTGATTGATGGCAGAGAAACTC 60.438 45.833 0.00 0.00 0.00 3.01
259 262 4.290711 TGATTGATGGCAGAGAAACTCA 57.709 40.909 0.00 0.00 32.06 3.41
260 263 4.851843 TGATTGATGGCAGAGAAACTCAT 58.148 39.130 0.00 0.00 32.06 2.90
261 264 5.258841 TGATTGATGGCAGAGAAACTCATT 58.741 37.500 0.00 0.00 32.06 2.57
262 265 5.124936 TGATTGATGGCAGAGAAACTCATTG 59.875 40.000 0.00 0.00 32.06 2.82
263 266 2.751259 TGATGGCAGAGAAACTCATTGC 59.249 45.455 0.00 0.00 32.99 3.56
264 267 2.574006 TGGCAGAGAAACTCATTGCT 57.426 45.000 10.94 0.00 33.85 3.91
265 268 2.156917 TGGCAGAGAAACTCATTGCTG 58.843 47.619 10.94 0.00 33.85 4.41
266 269 2.224597 TGGCAGAGAAACTCATTGCTGA 60.225 45.455 10.94 0.00 33.85 4.26
267 270 3.015327 GGCAGAGAAACTCATTGCTGAT 58.985 45.455 10.94 0.00 33.85 2.90
268 271 4.194640 GGCAGAGAAACTCATTGCTGATA 58.805 43.478 10.94 0.00 33.85 2.15
269 272 4.272991 GGCAGAGAAACTCATTGCTGATAG 59.727 45.833 10.94 0.00 33.85 2.08
270 273 4.874966 GCAGAGAAACTCATTGCTGATAGT 59.125 41.667 0.00 0.00 31.69 2.12
271 274 5.006552 GCAGAGAAACTCATTGCTGATAGTC 59.993 44.000 0.00 0.00 31.69 2.59
272 275 6.104665 CAGAGAAACTCATTGCTGATAGTCA 58.895 40.000 0.00 0.00 32.06 3.41
273 276 6.256104 CAGAGAAACTCATTGCTGATAGTCAG 59.744 42.308 2.65 2.65 39.05 3.51
274 277 6.047511 AGAAACTCATTGCTGATAGTCAGT 57.952 37.500 8.58 0.00 45.94 3.41
275 278 5.873712 AGAAACTCATTGCTGATAGTCAGTG 59.126 40.000 8.58 0.34 45.94 3.66
276 279 4.134379 ACTCATTGCTGATAGTCAGTGG 57.866 45.455 8.58 0.00 45.94 4.00
277 280 3.517100 ACTCATTGCTGATAGTCAGTGGT 59.483 43.478 8.58 0.00 45.94 4.16
278 281 4.118410 CTCATTGCTGATAGTCAGTGGTC 58.882 47.826 8.58 0.00 45.94 4.02
279 282 2.654749 TTGCTGATAGTCAGTGGTCG 57.345 50.000 8.58 0.00 45.94 4.79
280 283 1.834188 TGCTGATAGTCAGTGGTCGA 58.166 50.000 8.58 0.00 45.94 4.20
281 284 2.167662 TGCTGATAGTCAGTGGTCGAA 58.832 47.619 8.58 0.00 45.94 3.71
282 285 2.760650 TGCTGATAGTCAGTGGTCGAAT 59.239 45.455 8.58 0.00 45.94 3.34
283 286 3.181486 TGCTGATAGTCAGTGGTCGAATC 60.181 47.826 8.58 0.00 45.94 2.52
284 287 3.067461 GCTGATAGTCAGTGGTCGAATCT 59.933 47.826 8.58 0.00 45.94 2.40
285 288 4.791411 GCTGATAGTCAGTGGTCGAATCTC 60.791 50.000 8.58 0.00 45.94 2.75
286 289 3.312697 TGATAGTCAGTGGTCGAATCTCG 59.687 47.826 0.00 0.00 42.10 4.04
287 290 0.811915 AGTCAGTGGTCGAATCTCGG 59.188 55.000 0.00 0.00 40.88 4.63
288 291 0.802607 GTCAGTGGTCGAATCTCGGC 60.803 60.000 0.00 0.00 44.91 5.54
289 292 1.874019 CAGTGGTCGAATCTCGGCG 60.874 63.158 0.00 0.00 46.90 6.46
290 293 2.582498 GTGGTCGAATCTCGGCGG 60.582 66.667 7.21 0.00 46.90 6.13
291 294 3.833645 TGGTCGAATCTCGGCGGG 61.834 66.667 7.21 2.41 46.90 6.13
292 295 4.587189 GGTCGAATCTCGGCGGGG 62.587 72.222 7.05 0.00 46.90 5.73
293 296 3.524606 GTCGAATCTCGGCGGGGA 61.525 66.667 7.05 6.43 40.88 4.81
294 297 2.756691 TCGAATCTCGGCGGGGAA 60.757 61.111 7.05 0.00 40.88 3.97
295 298 2.279517 CGAATCTCGGCGGGGAAG 60.280 66.667 7.05 0.00 36.00 3.46
296 299 2.589159 GAATCTCGGCGGGGAAGC 60.589 66.667 7.05 0.00 0.00 3.86
297 300 3.083997 AATCTCGGCGGGGAAGCT 61.084 61.111 7.05 0.00 37.29 3.74
298 301 2.980213 GAATCTCGGCGGGGAAGCTC 62.980 65.000 7.05 1.71 37.29 4.09
302 305 4.530857 CGGCGGGGAAGCTCGATT 62.531 66.667 0.00 0.00 37.29 3.34
303 306 2.589159 GGCGGGGAAGCTCGATTC 60.589 66.667 0.00 0.00 37.29 2.52
304 307 2.186903 GCGGGGAAGCTCGATTCA 59.813 61.111 1.49 0.00 0.00 2.57
305 308 2.174319 GCGGGGAAGCTCGATTCAC 61.174 63.158 1.49 0.00 31.46 3.18
306 309 4.542075 GGGGAAGCTCGATTCACC 57.458 61.111 4.33 4.33 45.19 4.02
307 310 1.521681 GGGGAAGCTCGATTCACCG 60.522 63.158 4.33 0.00 42.69 4.94
308 311 1.515954 GGGAAGCTCGATTCACCGA 59.484 57.895 1.49 0.00 37.03 4.69
309 312 0.108329 GGGAAGCTCGATTCACCGAA 60.108 55.000 1.49 0.00 38.17 4.30
310 313 1.281899 GGAAGCTCGATTCACCGAAG 58.718 55.000 1.49 0.00 38.17 3.79
311 314 1.135083 GGAAGCTCGATTCACCGAAGA 60.135 52.381 1.49 0.00 38.17 2.87
312 315 2.189342 GAAGCTCGATTCACCGAAGAG 58.811 52.381 0.00 0.00 38.17 2.85
313 316 1.464734 AGCTCGATTCACCGAAGAGA 58.535 50.000 0.00 0.00 38.17 3.10
314 317 1.819288 AGCTCGATTCACCGAAGAGAA 59.181 47.619 0.00 0.00 38.17 2.87
315 318 2.428890 AGCTCGATTCACCGAAGAGAAT 59.571 45.455 0.00 0.00 38.17 2.40
316 319 2.792116 GCTCGATTCACCGAAGAGAATC 59.208 50.000 0.00 0.00 41.75 2.52
327 330 4.288645 GAGAATCTCGTCGCCGAC 57.711 61.111 7.29 7.29 38.40 4.79
346 349 4.736896 GCGGTGGACCTGGTCGAC 62.737 72.222 27.73 27.73 39.85 4.20
347 350 4.415332 CGGTGGACCTGGTCGACG 62.415 72.222 28.17 22.75 41.12 5.12
348 351 2.987547 GGTGGACCTGGTCGACGA 60.988 66.667 28.17 4.47 41.12 4.20
349 352 2.257676 GTGGACCTGGTCGACGAC 59.742 66.667 23.27 19.70 32.32 4.34
350 353 3.359523 TGGACCTGGTCGACGACG 61.360 66.667 20.92 10.49 41.26 5.12
351 354 4.112341 GGACCTGGTCGACGACGG 62.112 72.222 20.92 18.92 40.21 4.79
352 355 3.360340 GACCTGGTCGACGACGGT 61.360 66.667 22.53 22.53 40.21 4.83
353 356 3.606065 GACCTGGTCGACGACGGTG 62.606 68.421 25.94 16.78 40.21 4.94
354 357 4.415332 CCTGGTCGACGACGGTGG 62.415 72.222 20.92 17.44 40.21 4.61
382 385 4.479993 CGAGCAGGGGCAGGGAAG 62.480 72.222 0.00 0.00 44.61 3.46
383 386 4.120755 GAGCAGGGGCAGGGAAGG 62.121 72.222 0.00 0.00 44.61 3.46
386 389 4.052518 CAGGGGCAGGGAAGGGTG 62.053 72.222 0.00 0.00 0.00 4.61
390 393 4.048470 GGCAGGGAAGGGTGGGTC 62.048 72.222 0.00 0.00 0.00 4.46
391 394 3.256960 GCAGGGAAGGGTGGGTCA 61.257 66.667 0.00 0.00 0.00 4.02
392 395 2.757077 CAGGGAAGGGTGGGTCAC 59.243 66.667 0.00 0.00 0.00 3.67
393 396 2.928396 AGGGAAGGGTGGGTCACG 60.928 66.667 0.00 0.00 34.83 4.35
394 397 2.926242 GGGAAGGGTGGGTCACGA 60.926 66.667 0.00 0.00 34.83 4.35
395 398 2.346365 GGAAGGGTGGGTCACGAC 59.654 66.667 0.00 0.00 34.83 4.34
396 399 2.048503 GAAGGGTGGGTCACGACG 60.049 66.667 0.00 0.00 34.83 5.12
397 400 2.841044 AAGGGTGGGTCACGACGT 60.841 61.111 0.00 0.00 34.83 4.34
398 401 3.159858 AAGGGTGGGTCACGACGTG 62.160 63.158 21.88 21.88 34.83 4.49
399 402 4.675029 GGGTGGGTCACGACGTGG 62.675 72.222 26.55 9.38 34.83 4.94
400 403 3.608662 GGTGGGTCACGACGTGGA 61.609 66.667 26.55 11.55 34.83 4.02
401 404 2.355481 GTGGGTCACGACGTGGAC 60.355 66.667 26.55 21.02 33.87 4.02
402 405 2.520020 TGGGTCACGACGTGGACT 60.520 61.111 26.55 0.00 33.87 3.85
403 406 1.228215 TGGGTCACGACGTGGACTA 60.228 57.895 26.55 15.05 33.87 2.59
404 407 1.239296 TGGGTCACGACGTGGACTAG 61.239 60.000 26.55 1.03 33.87 2.57
405 408 1.154073 GGTCACGACGTGGACTAGC 60.154 63.158 26.55 13.69 33.87 3.42
406 409 1.577922 GTCACGACGTGGACTAGCA 59.422 57.895 26.55 3.61 33.87 3.49
407 410 0.454620 GTCACGACGTGGACTAGCAG 60.455 60.000 26.55 0.00 33.87 4.24
408 411 1.801913 CACGACGTGGACTAGCAGC 60.802 63.158 20.26 0.00 0.00 5.25
409 412 2.577112 CGACGTGGACTAGCAGCG 60.577 66.667 0.00 0.00 0.00 5.18
410 413 2.202623 GACGTGGACTAGCAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
411 414 2.989824 ACGTGGACTAGCAGCGGT 60.990 61.111 0.00 0.00 0.00 5.68
412 415 2.507102 CGTGGACTAGCAGCGGTG 60.507 66.667 10.98 10.98 0.00 4.94
413 416 2.125512 GTGGACTAGCAGCGGTGG 60.126 66.667 17.54 1.98 0.00 4.61
414 417 2.283604 TGGACTAGCAGCGGTGGA 60.284 61.111 17.54 0.00 0.00 4.02
415 418 2.351244 TGGACTAGCAGCGGTGGAG 61.351 63.158 17.54 0.00 0.00 3.86
416 419 2.052690 GGACTAGCAGCGGTGGAGA 61.053 63.158 17.54 0.00 0.00 3.71
417 420 1.435515 GACTAGCAGCGGTGGAGAG 59.564 63.158 17.54 1.26 0.00 3.20
418 421 2.105930 CTAGCAGCGGTGGAGAGC 59.894 66.667 17.54 0.58 0.00 4.09
419 422 3.764810 CTAGCAGCGGTGGAGAGCG 62.765 68.421 17.54 0.00 46.03 5.03
443 446 4.379243 CAGGCGGTCGAGGTGCTT 62.379 66.667 3.80 0.00 0.00 3.91
444 447 3.626924 AGGCGGTCGAGGTGCTTT 61.627 61.111 3.80 0.00 0.00 3.51
445 448 3.423154 GGCGGTCGAGGTGCTTTG 61.423 66.667 3.80 0.00 0.00 2.77
446 449 4.090057 GCGGTCGAGGTGCTTTGC 62.090 66.667 0.00 0.00 0.00 3.68
447 450 3.777925 CGGTCGAGGTGCTTTGCG 61.778 66.667 0.00 0.00 0.00 4.85
448 451 4.090057 GGTCGAGGTGCTTTGCGC 62.090 66.667 0.00 0.00 38.45 6.09
485 488 3.152400 CGGCTACCGGCTAGGGTT 61.152 66.667 0.00 0.00 46.96 4.11
486 489 2.504519 GGCTACCGGCTAGGGTTG 59.495 66.667 0.00 0.00 46.96 3.77
487 490 2.504519 GCTACCGGCTAGGGTTGG 59.495 66.667 0.00 0.00 46.96 3.77
488 491 3.103091 GCTACCGGCTAGGGTTGGG 62.103 68.421 0.00 0.00 46.96 4.12
489 492 2.365901 TACCGGCTAGGGTTGGGG 60.366 66.667 0.00 0.00 46.96 4.96
490 493 2.884179 CTACCGGCTAGGGTTGGGGA 62.884 65.000 0.00 0.00 46.96 4.81
491 494 2.884179 TACCGGCTAGGGTTGGGGAG 62.884 65.000 0.00 0.00 46.96 4.30
492 495 3.480133 CGGCTAGGGTTGGGGAGG 61.480 72.222 0.00 0.00 0.00 4.30
493 496 3.097162 GGCTAGGGTTGGGGAGGG 61.097 72.222 0.00 0.00 0.00 4.30
494 497 3.097162 GCTAGGGTTGGGGAGGGG 61.097 72.222 0.00 0.00 0.00 4.79
495 498 2.368329 CTAGGGTTGGGGAGGGGG 60.368 72.222 0.00 0.00 0.00 5.40
496 499 2.882676 TAGGGTTGGGGAGGGGGA 60.883 66.667 0.00 0.00 0.00 4.81
497 500 2.501943 CTAGGGTTGGGGAGGGGGAA 62.502 65.000 0.00 0.00 0.00 3.97
498 501 2.501943 TAGGGTTGGGGAGGGGGAAG 62.502 65.000 0.00 0.00 0.00 3.46
499 502 2.204244 GGTTGGGGAGGGGGAAGA 60.204 66.667 0.00 0.00 0.00 2.87
500 503 2.309504 GGTTGGGGAGGGGGAAGAG 61.310 68.421 0.00 0.00 0.00 2.85
501 504 2.127297 TTGGGGAGGGGGAAGAGG 59.873 66.667 0.00 0.00 0.00 3.69
502 505 2.506693 TTGGGGAGGGGGAAGAGGA 61.507 63.158 0.00 0.00 0.00 3.71
503 506 2.040359 GGGGAGGGGGAAGAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
504 507 2.788589 GGGAGGGGGAAGAGGAGT 59.211 66.667 0.00 0.00 0.00 3.85
505 508 1.383386 GGGAGGGGGAAGAGGAGTC 60.383 68.421 0.00 0.00 0.00 3.36
506 509 1.758906 GGAGGGGGAAGAGGAGTCG 60.759 68.421 0.00 0.00 0.00 4.18
507 510 2.364448 AGGGGGAAGAGGAGTCGC 60.364 66.667 0.00 0.00 0.00 5.19
508 511 3.839432 GGGGGAAGAGGAGTCGCG 61.839 72.222 0.00 0.00 0.00 5.87
509 512 3.839432 GGGGAAGAGGAGTCGCGG 61.839 72.222 6.13 0.00 0.00 6.46
510 513 3.839432 GGGAAGAGGAGTCGCGGG 61.839 72.222 6.13 0.00 0.00 6.13
511 514 3.069318 GGAAGAGGAGTCGCGGGT 61.069 66.667 6.13 0.00 0.00 5.28
512 515 2.182030 GAAGAGGAGTCGCGGGTG 59.818 66.667 6.13 0.00 0.00 4.61
513 516 3.991536 GAAGAGGAGTCGCGGGTGC 62.992 68.421 6.13 0.00 37.91 5.01
530 533 4.787280 CGGAGGACTGGAGGGGCT 62.787 72.222 0.00 0.00 0.00 5.19
531 534 2.766229 GGAGGACTGGAGGGGCTC 60.766 72.222 0.00 0.00 0.00 4.70
532 535 3.151022 GAGGACTGGAGGGGCTCG 61.151 72.222 0.00 0.00 0.00 5.03
533 536 3.663815 GAGGACTGGAGGGGCTCGA 62.664 68.421 0.00 0.00 0.00 4.04
534 537 3.151022 GGACTGGAGGGGCTCGAG 61.151 72.222 8.45 8.45 41.12 4.04
535 538 3.844090 GACTGGAGGGGCTCGAGC 61.844 72.222 29.38 29.38 39.41 5.03
540 543 4.803426 GAGGGGCTCGAGCGTGTG 62.803 72.222 29.81 0.00 43.26 3.82
546 549 2.807045 CTCGAGCGTGTGCAGGTC 60.807 66.667 0.00 0.00 46.23 3.85
547 550 4.357947 TCGAGCGTGTGCAGGTCC 62.358 66.667 0.00 0.00 46.23 4.46
548 551 4.662961 CGAGCGTGTGCAGGTCCA 62.663 66.667 0.00 0.00 46.23 4.02
549 552 2.046892 GAGCGTGTGCAGGTCCAT 60.047 61.111 0.00 0.00 46.23 3.41
550 553 2.046892 AGCGTGTGCAGGTCCATC 60.047 61.111 0.00 0.00 46.23 3.51
551 554 3.490759 GCGTGTGCAGGTCCATCG 61.491 66.667 0.00 0.00 42.15 3.84
552 555 2.261361 CGTGTGCAGGTCCATCGA 59.739 61.111 0.00 0.00 0.00 3.59
553 556 1.153568 CGTGTGCAGGTCCATCGAT 60.154 57.895 0.00 0.00 0.00 3.59
554 557 1.148157 CGTGTGCAGGTCCATCGATC 61.148 60.000 0.00 0.00 0.00 3.69
555 558 0.108186 GTGTGCAGGTCCATCGATCA 60.108 55.000 0.00 0.00 0.00 2.92
556 559 0.108186 TGTGCAGGTCCATCGATCAC 60.108 55.000 0.00 0.00 0.00 3.06
557 560 0.176680 GTGCAGGTCCATCGATCACT 59.823 55.000 0.00 0.00 0.00 3.41
558 561 0.904649 TGCAGGTCCATCGATCACTT 59.095 50.000 0.00 0.00 0.00 3.16
559 562 1.134699 TGCAGGTCCATCGATCACTTC 60.135 52.381 0.00 0.00 0.00 3.01
560 563 1.134699 GCAGGTCCATCGATCACTTCA 60.135 52.381 0.00 0.00 0.00 3.02
561 564 2.544685 CAGGTCCATCGATCACTTCAC 58.455 52.381 0.00 0.00 0.00 3.18
562 565 1.135139 AGGTCCATCGATCACTTCACG 59.865 52.381 0.00 0.00 0.00 4.35
563 566 1.560923 GTCCATCGATCACTTCACGG 58.439 55.000 0.00 0.00 0.00 4.94
564 567 1.135083 GTCCATCGATCACTTCACGGT 60.135 52.381 0.00 0.00 0.00 4.83
565 568 1.135112 TCCATCGATCACTTCACGGTG 60.135 52.381 0.56 0.56 37.79 4.94
566 569 1.280982 CATCGATCACTTCACGGTGG 58.719 55.000 8.50 0.00 37.75 4.61
567 570 0.460284 ATCGATCACTTCACGGTGGC 60.460 55.000 8.50 0.00 37.75 5.01
568 571 1.374125 CGATCACTTCACGGTGGCA 60.374 57.895 8.50 0.00 37.75 4.92
569 572 1.626654 CGATCACTTCACGGTGGCAC 61.627 60.000 9.70 9.70 37.75 5.01
570 573 1.626654 GATCACTTCACGGTGGCACG 61.627 60.000 12.17 9.61 37.75 5.34
571 574 3.345808 CACTTCACGGTGGCACGG 61.346 66.667 21.86 21.86 38.39 4.94
572 575 4.619227 ACTTCACGGTGGCACGGG 62.619 66.667 26.02 16.08 38.97 5.28
583 586 3.899395 GCACGGGCCGTAATTTCT 58.101 55.556 33.65 3.64 38.32 2.52
584 587 2.177044 GCACGGGCCGTAATTTCTT 58.823 52.632 33.65 2.71 38.32 2.52
585 588 0.524414 GCACGGGCCGTAATTTCTTT 59.476 50.000 33.65 1.79 38.32 2.52
586 589 1.466866 GCACGGGCCGTAATTTCTTTC 60.467 52.381 33.65 8.31 38.32 2.62
587 590 1.131693 CACGGGCCGTAATTTCTTTCC 59.868 52.381 33.65 0.00 38.32 3.13
588 591 1.271488 ACGGGCCGTAATTTCTTTCCA 60.271 47.619 33.31 0.00 38.73 3.53
589 592 1.813786 CGGGCCGTAATTTCTTTCCAA 59.186 47.619 19.97 0.00 0.00 3.53
590 593 2.229302 CGGGCCGTAATTTCTTTCCAAA 59.771 45.455 19.97 0.00 0.00 3.28
591 594 3.119280 CGGGCCGTAATTTCTTTCCAAAT 60.119 43.478 19.97 0.00 0.00 2.32
592 595 4.430007 GGGCCGTAATTTCTTTCCAAATC 58.570 43.478 0.00 0.00 0.00 2.17
593 596 4.430007 GGCCGTAATTTCTTTCCAAATCC 58.570 43.478 0.00 0.00 0.00 3.01
594 597 4.430007 GCCGTAATTTCTTTCCAAATCCC 58.570 43.478 0.00 0.00 0.00 3.85
595 598 4.668289 CCGTAATTTCTTTCCAAATCCCG 58.332 43.478 0.00 0.00 0.00 5.14
596 599 4.102649 CGTAATTTCTTTCCAAATCCCGC 58.897 43.478 0.00 0.00 0.00 6.13
597 600 4.142469 CGTAATTTCTTTCCAAATCCCGCT 60.142 41.667 0.00 0.00 0.00 5.52
598 601 4.890158 AATTTCTTTCCAAATCCCGCTT 57.110 36.364 0.00 0.00 0.00 4.68
599 602 3.934457 TTTCTTTCCAAATCCCGCTTC 57.066 42.857 0.00 0.00 0.00 3.86
600 603 1.834188 TCTTTCCAAATCCCGCTTCC 58.166 50.000 0.00 0.00 0.00 3.46
601 604 0.817654 CTTTCCAAATCCCGCTTCCC 59.182 55.000 0.00 0.00 0.00 3.97
602 605 0.113385 TTTCCAAATCCCGCTTCCCA 59.887 50.000 0.00 0.00 0.00 4.37
603 606 0.113385 TTCCAAATCCCGCTTCCCAA 59.887 50.000 0.00 0.00 0.00 4.12
604 607 0.334676 TCCAAATCCCGCTTCCCAAT 59.665 50.000 0.00 0.00 0.00 3.16
605 608 1.194218 CCAAATCCCGCTTCCCAATT 58.806 50.000 0.00 0.00 0.00 2.32
606 609 1.554617 CCAAATCCCGCTTCCCAATTT 59.445 47.619 0.00 0.00 0.00 1.82
607 610 2.418609 CCAAATCCCGCTTCCCAATTTC 60.419 50.000 0.00 0.00 0.00 2.17
608 611 1.485124 AATCCCGCTTCCCAATTTCC 58.515 50.000 0.00 0.00 0.00 3.13
609 612 0.631212 ATCCCGCTTCCCAATTTCCT 59.369 50.000 0.00 0.00 0.00 3.36
610 613 0.407918 TCCCGCTTCCCAATTTCCTT 59.592 50.000 0.00 0.00 0.00 3.36
611 614 0.532115 CCCGCTTCCCAATTTCCTTG 59.468 55.000 0.00 0.00 34.42 3.61
620 623 1.928868 CAATTTCCTTGGAGCCAGGT 58.071 50.000 0.00 0.00 0.00 4.00
621 624 2.250924 CAATTTCCTTGGAGCCAGGTT 58.749 47.619 0.00 0.00 0.00 3.50
622 625 2.634453 CAATTTCCTTGGAGCCAGGTTT 59.366 45.455 0.00 0.00 0.00 3.27
623 626 2.470057 TTTCCTTGGAGCCAGGTTTT 57.530 45.000 0.00 0.00 0.00 2.43
624 627 1.995376 TTCCTTGGAGCCAGGTTTTC 58.005 50.000 0.00 0.00 0.00 2.29
625 628 0.112412 TCCTTGGAGCCAGGTTTTCC 59.888 55.000 0.00 0.00 41.05 3.13
647 650 6.778821 TCCCAAGAGTAAAATTCATCAGTGA 58.221 36.000 0.00 0.00 0.00 3.41
651 654 9.388506 CCAAGAGTAAAATTCATCAGTGATACT 57.611 33.333 5.03 3.70 32.09 2.12
677 680 3.837093 CGTCGCGCAGTCACTTTA 58.163 55.556 8.75 0.00 0.00 1.85
721 724 3.061322 GCAATACGGTCACTGTGTACAA 58.939 45.455 7.79 0.00 0.00 2.41
724 727 2.902705 ACGGTCACTGTGTACAATGT 57.097 45.000 7.79 0.00 0.00 2.71
725 728 2.479837 ACGGTCACTGTGTACAATGTG 58.520 47.619 18.15 18.15 0.00 3.21
726 729 2.101750 ACGGTCACTGTGTACAATGTGA 59.898 45.455 21.16 21.16 37.14 3.58
739 742 5.690857 TGTACAATGTGACGTGAAAATACGA 59.309 36.000 0.00 0.00 46.46 3.43
740 743 5.013861 ACAATGTGACGTGAAAATACGAC 57.986 39.130 0.00 0.00 46.46 4.34
746 749 3.243468 TGACGTGAAAATACGACCACTGA 60.243 43.478 0.00 0.00 46.46 3.41
758 761 0.539901 ACCACTGAGTGCCGTAGACT 60.540 55.000 7.16 0.00 31.34 3.24
807 810 2.365635 AGCTCCACATAGGCGGGT 60.366 61.111 0.00 0.00 37.29 5.28
825 828 5.237996 GGCGGGTAGAGGATTTATGTTAAAC 59.762 44.000 0.00 0.00 0.00 2.01
847 850 2.046700 CTTTTGCGGGAGGGCGTA 60.047 61.111 0.00 0.00 35.06 4.42
889 894 3.117512 GCTAGAAATCCCCAATTCTCCCA 60.118 47.826 0.00 0.00 37.16 4.37
900 905 3.564133 CCAATTCTCCCACTCCAAATCCA 60.564 47.826 0.00 0.00 0.00 3.41
928 942 2.731571 GCACGCCCATCCCTAGTCA 61.732 63.158 0.00 0.00 0.00 3.41
951 966 4.626081 GCCACGCGCCCATCCTAT 62.626 66.667 5.73 0.00 0.00 2.57
1027 1064 1.478510 CTGCTAGTTCTGTCCGGTCAT 59.521 52.381 0.00 0.00 0.00 3.06
1055 1092 3.556306 CCGGACAGTGGTGGTGGT 61.556 66.667 0.00 0.00 0.00 4.16
1068 1437 2.123428 GGTGGTGCTCATCCCATGC 61.123 63.158 0.00 0.00 32.32 4.06
1076 1445 1.427809 CTCATCCCATGCCCTCACTA 58.572 55.000 0.00 0.00 0.00 2.74
1144 1513 4.105057 AGGGTTGGGTGTTCTACAAATGTA 59.895 41.667 0.00 0.00 0.00 2.29
1155 1524 7.172532 GTGTTCTACAAATGTACCAATCACTCA 59.827 37.037 0.00 0.00 0.00 3.41
1172 1554 9.692749 CAATCACTCAGTAAGTAACTTGAGTTA 57.307 33.333 3.43 0.00 41.03 2.24
1185 1567 9.106070 AGTAACTTGAGTTAATTTCGTTCTTGT 57.894 29.630 5.24 0.00 41.58 3.16
1188 1570 7.981142 ACTTGAGTTAATTTCGTTCTTGTCAA 58.019 30.769 0.00 0.00 0.00 3.18
1189 1571 8.455682 ACTTGAGTTAATTTCGTTCTTGTCAAA 58.544 29.630 0.00 0.00 0.00 2.69
1190 1572 8.835467 TTGAGTTAATTTCGTTCTTGTCAAAG 57.165 30.769 0.00 0.00 34.45 2.77
1191 1573 7.981142 TGAGTTAATTTCGTTCTTGTCAAAGT 58.019 30.769 0.00 0.00 34.78 2.66
1192 1574 8.455682 TGAGTTAATTTCGTTCTTGTCAAAGTT 58.544 29.630 0.00 0.00 34.78 2.66
1196 1578 4.630894 TTCGTTCTTGTCAAAGTTGCAT 57.369 36.364 0.00 0.00 34.78 3.96
1216 1640 4.907582 GCATTTTTCACATTTTGCTCTTGC 59.092 37.500 0.00 0.00 40.20 4.01
1320 1744 3.120321 ACCAAGCAGTTGATGTCGTTA 57.880 42.857 0.00 0.00 35.46 3.18
1342 1766 0.322906 GCAACAAAGGAGAGGAGGGG 60.323 60.000 0.00 0.00 0.00 4.79
1347 1771 1.836802 CAAAGGAGAGGAGGGGAGAAG 59.163 57.143 0.00 0.00 0.00 2.85
1354 1778 4.290942 GAGAGGAGGGGAGAAGTCATTAA 58.709 47.826 0.00 0.00 0.00 1.40
1356 1780 4.016105 AGAGGAGGGGAGAAGTCATTAAGA 60.016 45.833 0.00 0.00 0.00 2.10
1372 1796 7.565680 GTCATTAAGACTAGGAATGGAAGGAA 58.434 38.462 0.00 0.00 44.09 3.36
1383 1807 4.162888 GGAATGGAAGGAAAAGGATTGCAT 59.837 41.667 0.00 0.00 36.67 3.96
1405 1830 2.425312 CTCGACTGGCAACTGATAGAGT 59.575 50.000 0.00 0.00 39.15 3.24
1449 1874 0.959372 GCAGCAGAACATGAGCAGGT 60.959 55.000 0.00 0.00 33.24 4.00
1527 1952 1.089920 CTTGGGTAGTGTGATGCTGC 58.910 55.000 0.00 0.00 0.00 5.25
1605 2036 5.545588 CAACAGAAGAAGTGATGAAGGAGA 58.454 41.667 0.00 0.00 0.00 3.71
1641 2762 9.646427 GAAGAATAAGAAGAAGAAGAAGTGCTA 57.354 33.333 0.00 0.00 0.00 3.49
1772 2920 7.063308 CAGTTTGGTTGTATCAAATGTTATGGC 59.937 37.037 0.00 0.00 36.64 4.40
1774 2922 7.946381 TTGGTTGTATCAAATGTTATGGCTA 57.054 32.000 0.00 0.00 0.00 3.93
1806 2954 8.457261 GCCAGAAATGTATGAAATGATCTATCC 58.543 37.037 0.00 0.00 0.00 2.59
1876 3151 6.600882 AATTGTGAAATGAGAAGAATGGCT 57.399 33.333 0.00 0.00 0.00 4.75
1877 3152 7.707624 AATTGTGAAATGAGAAGAATGGCTA 57.292 32.000 0.00 0.00 0.00 3.93
1878 3153 7.893124 ATTGTGAAATGAGAAGAATGGCTAT 57.107 32.000 0.00 0.00 0.00 2.97
1879 3154 6.932356 TGTGAAATGAGAAGAATGGCTATC 57.068 37.500 0.00 0.00 0.00 2.08
1880 3155 6.656902 TGTGAAATGAGAAGAATGGCTATCT 58.343 36.000 0.00 0.00 0.00 1.98
1881 3156 7.795047 TGTGAAATGAGAAGAATGGCTATCTA 58.205 34.615 0.00 0.00 0.00 1.98
1882 3157 8.435187 TGTGAAATGAGAAGAATGGCTATCTAT 58.565 33.333 0.00 0.00 0.00 1.98
1883 3158 8.934825 GTGAAATGAGAAGAATGGCTATCTATC 58.065 37.037 0.00 0.00 0.00 2.08
1884 3159 8.654094 TGAAATGAGAAGAATGGCTATCTATCA 58.346 33.333 8.97 8.97 31.37 2.15
1885 3160 9.669887 GAAATGAGAAGAATGGCTATCTATCAT 57.330 33.333 11.44 11.44 36.12 2.45
1886 3161 9.451002 AAATGAGAAGAATGGCTATCTATCATG 57.549 33.333 15.03 0.00 35.41 3.07
1887 3162 7.787623 TGAGAAGAATGGCTATCTATCATGA 57.212 36.000 0.00 0.00 0.00 3.07
1888 3163 8.376803 TGAGAAGAATGGCTATCTATCATGAT 57.623 34.615 13.81 13.81 0.00 2.45
1889 3164 9.484806 TGAGAAGAATGGCTATCTATCATGATA 57.515 33.333 14.64 14.64 0.00 2.15
1919 3194 9.304731 CTGAAATGGAAATAAATGGTGTGTATG 57.695 33.333 0.00 0.00 0.00 2.39
1925 3200 9.076781 TGGAAATAAATGGTGTGTATGATATGG 57.923 33.333 0.00 0.00 0.00 2.74
1933 3208 9.547279 AATGGTGTGTATGATATGGTCTATCTA 57.453 33.333 0.00 0.00 0.00 1.98
1949 3224 9.135189 TGGTCTATCTAAAATGGAATTCATTGG 57.865 33.333 7.93 0.00 44.68 3.16
1950 3225 9.136323 GGTCTATCTAAAATGGAATTCATTGGT 57.864 33.333 7.93 1.39 44.68 3.67
1956 3231 8.912988 TCTAAAATGGAATTCATTGGTATGACC 58.087 33.333 7.93 0.00 44.68 4.02
1957 3232 7.493499 AAAATGGAATTCATTGGTATGACCA 57.507 32.000 7.93 0.00 44.68 4.02
1958 3233 7.679732 AAATGGAATTCATTGGTATGACCAT 57.320 32.000 7.93 0.00 41.96 3.55
2040 3330 7.650903 GGAAAGAATGGCATCAAGAATGTAATC 59.349 37.037 0.00 0.00 37.71 1.75
2089 3380 6.585695 AAAATGACAAGCATGAGAAGACAT 57.414 33.333 0.00 0.00 37.28 3.06
2098 3389 5.987098 AGCATGAGAAGACATACAAGACAT 58.013 37.500 0.00 0.00 0.00 3.06
2327 3748 3.864540 GCCCTTTTATGTGCTTGTTTCCC 60.865 47.826 0.00 0.00 0.00 3.97
2399 3821 2.234143 GCAAGGGCTTGTTTCTCTTCT 58.766 47.619 0.00 0.00 42.31 2.85
2448 3870 0.251033 TGCTTCCTTCTGTGCAGCAT 60.251 50.000 0.00 0.00 35.56 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.154462 CGGAGTTGAGGATTTTGCAGT 58.846 47.619 0.00 0.00 0.00 4.40
31 32 2.611800 TGCCTGCTGGATCTGGGT 60.612 61.111 14.77 0.00 34.57 4.51
46 47 1.745653 GGAGTTTATGTGGGAAGCTGC 59.254 52.381 0.00 0.00 0.00 5.25
58 59 2.457598 TCTGTCGCTCCAGGAGTTTAT 58.542 47.619 18.37 0.00 33.14 1.40
76 77 1.449246 GCTGCCGCAGAACAGATCT 60.449 57.895 24.80 0.00 39.68 2.75
77 78 1.023513 AAGCTGCCGCAGAACAGATC 61.024 55.000 24.80 4.20 39.10 2.75
156 159 1.423395 CACAGAGAAACGAGACCTGC 58.577 55.000 0.00 0.00 0.00 4.85
161 164 0.318441 CAGGCCACAGAGAAACGAGA 59.682 55.000 5.01 0.00 0.00 4.04
162 165 0.671781 CCAGGCCACAGAGAAACGAG 60.672 60.000 5.01 0.00 0.00 4.18
183 186 1.108776 TGGTCAGTAGCCCACGTATC 58.891 55.000 0.00 0.00 0.00 2.24
203 206 1.247567 CCGTCCACCTCTTGCAATTT 58.752 50.000 0.00 0.00 0.00 1.82
209 212 2.660064 CCTCCCCGTCCACCTCTTG 61.660 68.421 0.00 0.00 0.00 3.02
230 233 0.396139 TGCCATCAATCAAGCTCCCC 60.396 55.000 0.00 0.00 0.00 4.81
238 241 4.290711 TGAGTTTCTCTGCCATCAATCA 57.709 40.909 0.00 0.00 0.00 2.57
239 242 5.579718 CAATGAGTTTCTCTGCCATCAATC 58.420 41.667 0.00 0.00 0.00 2.67
245 248 2.156917 CAGCAATGAGTTTCTCTGCCA 58.843 47.619 7.16 0.00 33.84 4.92
247 250 4.874966 ACTATCAGCAATGAGTTTCTCTGC 59.125 41.667 3.78 3.78 33.64 4.26
262 265 7.973522 CGAGATTCGACCACTGACTATCAGC 62.974 52.000 5.74 0.00 44.71 4.26
263 266 4.553742 CGAGATTCGACCACTGACTATCAG 60.554 50.000 4.27 4.27 45.61 2.90
264 267 3.312697 CGAGATTCGACCACTGACTATCA 59.687 47.826 0.00 0.00 43.74 2.15
265 268 3.304123 CCGAGATTCGACCACTGACTATC 60.304 52.174 0.00 0.00 43.74 2.08
266 269 2.619177 CCGAGATTCGACCACTGACTAT 59.381 50.000 0.00 0.00 43.74 2.12
267 270 2.014857 CCGAGATTCGACCACTGACTA 58.985 52.381 0.00 0.00 43.74 2.59
268 271 0.811915 CCGAGATTCGACCACTGACT 59.188 55.000 0.00 0.00 43.74 3.41
269 272 0.802607 GCCGAGATTCGACCACTGAC 60.803 60.000 0.00 0.00 43.74 3.51
270 273 1.511305 GCCGAGATTCGACCACTGA 59.489 57.895 0.00 0.00 43.74 3.41
271 274 1.874019 CGCCGAGATTCGACCACTG 60.874 63.158 0.00 0.00 43.74 3.66
272 275 2.490217 CGCCGAGATTCGACCACT 59.510 61.111 0.00 0.00 43.74 4.00
273 276 2.582498 CCGCCGAGATTCGACCAC 60.582 66.667 0.00 0.00 43.74 4.16
274 277 3.833645 CCCGCCGAGATTCGACCA 61.834 66.667 0.00 0.00 43.74 4.02
275 278 4.587189 CCCCGCCGAGATTCGACC 62.587 72.222 0.00 0.00 43.74 4.79
276 279 2.955751 CTTCCCCGCCGAGATTCGAC 62.956 65.000 0.00 0.00 43.74 4.20
277 280 2.756691 TTCCCCGCCGAGATTCGA 60.757 61.111 0.00 0.00 43.74 3.71
278 281 2.279517 CTTCCCCGCCGAGATTCG 60.280 66.667 0.00 0.00 40.07 3.34
279 282 2.589159 GCTTCCCCGCCGAGATTC 60.589 66.667 0.00 0.00 0.00 2.52
280 283 3.083997 AGCTTCCCCGCCGAGATT 61.084 61.111 0.00 0.00 0.00 2.40
281 284 3.541713 GAGCTTCCCCGCCGAGAT 61.542 66.667 0.00 0.00 0.00 2.75
285 288 4.530857 AATCGAGCTTCCCCGCCG 62.531 66.667 0.00 0.00 0.00 6.46
286 289 2.589159 GAATCGAGCTTCCCCGCC 60.589 66.667 0.00 0.00 0.00 6.13
287 290 2.174319 GTGAATCGAGCTTCCCCGC 61.174 63.158 0.00 0.00 0.00 6.13
288 291 1.521681 GGTGAATCGAGCTTCCCCG 60.522 63.158 0.00 0.00 0.00 5.73
289 292 1.521681 CGGTGAATCGAGCTTCCCC 60.522 63.158 0.00 0.00 0.00 4.81
290 293 0.108329 TTCGGTGAATCGAGCTTCCC 60.108 55.000 0.00 0.00 40.42 3.97
291 294 1.135083 TCTTCGGTGAATCGAGCTTCC 60.135 52.381 0.00 0.00 40.42 3.46
292 295 2.159366 TCTCTTCGGTGAATCGAGCTTC 60.159 50.000 0.00 0.00 40.42 3.86
293 296 1.819288 TCTCTTCGGTGAATCGAGCTT 59.181 47.619 0.00 0.00 40.42 3.74
294 297 1.464734 TCTCTTCGGTGAATCGAGCT 58.535 50.000 0.00 0.00 40.42 4.09
295 298 2.279582 TTCTCTTCGGTGAATCGAGC 57.720 50.000 0.00 0.00 40.42 5.03
299 302 4.035278 ACGAGATTCTCTTCGGTGAATC 57.965 45.455 11.75 10.78 46.66 2.52
300 303 3.487711 CGACGAGATTCTCTTCGGTGAAT 60.488 47.826 26.33 0.00 44.61 2.57
301 304 2.159558 CGACGAGATTCTCTTCGGTGAA 60.160 50.000 26.33 0.00 44.61 3.18
302 305 1.397343 CGACGAGATTCTCTTCGGTGA 59.603 52.381 26.33 0.00 44.61 4.02
303 306 1.816370 CGACGAGATTCTCTTCGGTG 58.184 55.000 26.33 8.17 44.61 4.94
329 332 4.736896 GTCGACCAGGTCCACCGC 62.737 72.222 14.46 0.00 42.08 5.68
330 333 4.415332 CGTCGACCAGGTCCACCG 62.415 72.222 14.46 9.62 42.08 4.94
331 334 2.987547 TCGTCGACCAGGTCCACC 60.988 66.667 14.46 1.03 0.00 4.61
332 335 2.257676 GTCGTCGACCAGGTCCAC 59.742 66.667 14.60 10.76 0.00 4.02
333 336 3.359523 CGTCGTCGACCAGGTCCA 61.360 66.667 19.29 0.00 39.71 4.02
334 337 4.112341 CCGTCGTCGACCAGGTCC 62.112 72.222 19.29 0.00 39.71 4.46
335 338 3.360340 ACCGTCGTCGACCAGGTC 61.360 66.667 19.29 9.92 39.71 3.85
336 339 3.667282 CACCGTCGTCGACCAGGT 61.667 66.667 19.29 17.73 39.71 4.00
337 340 4.415332 CCACCGTCGTCGACCAGG 62.415 72.222 19.29 17.10 39.71 4.45
365 368 4.479993 CTTCCCTGCCCCTGCTCG 62.480 72.222 0.00 0.00 38.71 5.03
366 369 4.120755 CCTTCCCTGCCCCTGCTC 62.121 72.222 0.00 0.00 38.71 4.26
369 372 4.052518 CACCCTTCCCTGCCCCTG 62.053 72.222 0.00 0.00 0.00 4.45
373 376 4.048470 GACCCACCCTTCCCTGCC 62.048 72.222 0.00 0.00 0.00 4.85
374 377 3.256960 TGACCCACCCTTCCCTGC 61.257 66.667 0.00 0.00 0.00 4.85
375 378 2.757077 GTGACCCACCCTTCCCTG 59.243 66.667 0.00 0.00 0.00 4.45
376 379 2.928396 CGTGACCCACCCTTCCCT 60.928 66.667 0.00 0.00 0.00 4.20
377 380 2.926242 TCGTGACCCACCCTTCCC 60.926 66.667 0.00 0.00 0.00 3.97
378 381 2.346365 GTCGTGACCCACCCTTCC 59.654 66.667 0.00 0.00 0.00 3.46
379 382 2.048503 CGTCGTGACCCACCCTTC 60.049 66.667 0.00 0.00 0.00 3.46
380 383 2.841044 ACGTCGTGACCCACCCTT 60.841 61.111 0.00 0.00 0.00 3.95
381 384 3.612681 CACGTCGTGACCCACCCT 61.613 66.667 20.75 0.00 35.23 4.34
382 385 4.675029 CCACGTCGTGACCCACCC 62.675 72.222 26.53 0.00 35.23 4.61
383 386 3.608662 TCCACGTCGTGACCCACC 61.609 66.667 26.53 0.00 35.23 4.61
384 387 1.518056 TAGTCCACGTCGTGACCCAC 61.518 60.000 26.53 15.73 35.23 4.61
385 388 1.228215 TAGTCCACGTCGTGACCCA 60.228 57.895 26.53 10.34 35.23 4.51
386 389 1.505353 CTAGTCCACGTCGTGACCC 59.495 63.158 26.53 12.94 35.23 4.46
387 390 1.154073 GCTAGTCCACGTCGTGACC 60.154 63.158 26.53 15.35 35.23 4.02
388 391 0.454620 CTGCTAGTCCACGTCGTGAC 60.455 60.000 26.53 20.12 35.23 3.67
389 392 1.873863 CTGCTAGTCCACGTCGTGA 59.126 57.895 26.53 9.94 35.23 4.35
390 393 1.801913 GCTGCTAGTCCACGTCGTG 60.802 63.158 18.54 18.54 0.00 4.35
391 394 2.567049 GCTGCTAGTCCACGTCGT 59.433 61.111 0.00 0.00 0.00 4.34
392 395 2.577112 CGCTGCTAGTCCACGTCG 60.577 66.667 0.00 0.00 0.00 5.12
393 396 2.202623 CCGCTGCTAGTCCACGTC 60.203 66.667 0.00 0.00 0.00 4.34
394 397 2.989824 ACCGCTGCTAGTCCACGT 60.990 61.111 0.00 0.00 0.00 4.49
395 398 2.507102 CACCGCTGCTAGTCCACG 60.507 66.667 0.00 0.00 0.00 4.94
396 399 2.125512 CCACCGCTGCTAGTCCAC 60.126 66.667 0.00 0.00 0.00 4.02
397 400 2.283604 TCCACCGCTGCTAGTCCA 60.284 61.111 0.00 0.00 0.00 4.02
398 401 2.010582 CTCTCCACCGCTGCTAGTCC 62.011 65.000 0.00 0.00 0.00 3.85
399 402 1.435515 CTCTCCACCGCTGCTAGTC 59.564 63.158 0.00 0.00 0.00 2.59
400 403 2.716017 GCTCTCCACCGCTGCTAGT 61.716 63.158 0.00 0.00 0.00 2.57
401 404 2.105930 GCTCTCCACCGCTGCTAG 59.894 66.667 0.00 0.00 0.00 3.42
402 405 3.826754 CGCTCTCCACCGCTGCTA 61.827 66.667 0.00 0.00 0.00 3.49
426 429 3.883744 AAAGCACCTCGACCGCCTG 62.884 63.158 0.00 0.00 0.00 4.85
427 430 3.626924 AAAGCACCTCGACCGCCT 61.627 61.111 0.00 0.00 0.00 5.52
428 431 3.423154 CAAAGCACCTCGACCGCC 61.423 66.667 0.00 0.00 0.00 6.13
429 432 4.090057 GCAAAGCACCTCGACCGC 62.090 66.667 0.00 0.00 0.00 5.68
430 433 3.777925 CGCAAAGCACCTCGACCG 61.778 66.667 0.00 0.00 0.00 4.79
469 472 2.504519 CAACCCTAGCCGGTAGCC 59.495 66.667 1.90 0.00 45.47 3.93
470 473 2.504519 CCAACCCTAGCCGGTAGC 59.495 66.667 1.90 0.00 44.25 3.58
471 474 2.440817 CCCCAACCCTAGCCGGTAG 61.441 68.421 1.90 3.63 33.98 3.18
472 475 2.365901 CCCCAACCCTAGCCGGTA 60.366 66.667 1.90 0.00 33.98 4.02
473 476 4.342086 TCCCCAACCCTAGCCGGT 62.342 66.667 1.90 0.00 37.93 5.28
474 477 3.480133 CTCCCCAACCCTAGCCGG 61.480 72.222 0.00 0.00 0.00 6.13
475 478 3.480133 CCTCCCCAACCCTAGCCG 61.480 72.222 0.00 0.00 0.00 5.52
476 479 3.097162 CCCTCCCCAACCCTAGCC 61.097 72.222 0.00 0.00 0.00 3.93
477 480 3.097162 CCCCTCCCCAACCCTAGC 61.097 72.222 0.00 0.00 0.00 3.42
478 481 2.368329 CCCCCTCCCCAACCCTAG 60.368 72.222 0.00 0.00 0.00 3.02
479 482 2.501943 CTTCCCCCTCCCCAACCCTA 62.502 65.000 0.00 0.00 0.00 3.53
480 483 3.895600 TTCCCCCTCCCCAACCCT 61.896 66.667 0.00 0.00 0.00 4.34
481 484 3.347590 CTTCCCCCTCCCCAACCC 61.348 72.222 0.00 0.00 0.00 4.11
482 485 2.204244 TCTTCCCCCTCCCCAACC 60.204 66.667 0.00 0.00 0.00 3.77
483 486 2.309504 CCTCTTCCCCCTCCCCAAC 61.310 68.421 0.00 0.00 0.00 3.77
484 487 2.127297 CCTCTTCCCCCTCCCCAA 59.873 66.667 0.00 0.00 0.00 4.12
485 488 2.879490 TCCTCTTCCCCCTCCCCA 60.879 66.667 0.00 0.00 0.00 4.96
486 489 2.040359 CTCCTCTTCCCCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
487 490 1.383386 GACTCCTCTTCCCCCTCCC 60.383 68.421 0.00 0.00 0.00 4.30
488 491 1.758906 CGACTCCTCTTCCCCCTCC 60.759 68.421 0.00 0.00 0.00 4.30
489 492 2.428085 GCGACTCCTCTTCCCCCTC 61.428 68.421 0.00 0.00 0.00 4.30
490 493 2.364448 GCGACTCCTCTTCCCCCT 60.364 66.667 0.00 0.00 0.00 4.79
491 494 3.839432 CGCGACTCCTCTTCCCCC 61.839 72.222 0.00 0.00 0.00 5.40
492 495 3.839432 CCGCGACTCCTCTTCCCC 61.839 72.222 8.23 0.00 0.00 4.81
493 496 3.839432 CCCGCGACTCCTCTTCCC 61.839 72.222 8.23 0.00 0.00 3.97
494 497 3.069318 ACCCGCGACTCCTCTTCC 61.069 66.667 8.23 0.00 0.00 3.46
495 498 2.182030 CACCCGCGACTCCTCTTC 59.818 66.667 8.23 0.00 0.00 2.87
496 499 4.070552 GCACCCGCGACTCCTCTT 62.071 66.667 8.23 0.00 0.00 2.85
508 511 3.775654 CTCCAGTCCTCCGCACCC 61.776 72.222 0.00 0.00 0.00 4.61
509 512 3.775654 CCTCCAGTCCTCCGCACC 61.776 72.222 0.00 0.00 0.00 5.01
510 513 3.775654 CCCTCCAGTCCTCCGCAC 61.776 72.222 0.00 0.00 0.00 5.34
513 516 4.787280 AGCCCCTCCAGTCCTCCG 62.787 72.222 0.00 0.00 0.00 4.63
514 517 2.766229 GAGCCCCTCCAGTCCTCC 60.766 72.222 0.00 0.00 0.00 4.30
515 518 3.151022 CGAGCCCCTCCAGTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
516 519 3.670629 CTCGAGCCCCTCCAGTCCT 62.671 68.421 0.00 0.00 0.00 3.85
517 520 3.151022 CTCGAGCCCCTCCAGTCC 61.151 72.222 0.00 0.00 0.00 3.85
518 521 3.844090 GCTCGAGCCCCTCCAGTC 61.844 72.222 27.22 0.00 34.31 3.51
523 526 4.803426 CACACGCTCGAGCCCCTC 62.803 72.222 30.66 4.28 37.91 4.30
529 532 2.807045 GACCTGCACACGCTCGAG 60.807 66.667 8.45 8.45 39.64 4.04
530 533 4.357947 GGACCTGCACACGCTCGA 62.358 66.667 0.00 0.00 39.64 4.04
531 534 3.939837 ATGGACCTGCACACGCTCG 62.940 63.158 0.00 0.00 39.64 5.03
532 535 2.046892 ATGGACCTGCACACGCTC 60.047 61.111 0.00 0.00 39.64 5.03
533 536 2.046892 GATGGACCTGCACACGCT 60.047 61.111 0.00 0.00 39.64 5.07
534 537 3.490759 CGATGGACCTGCACACGC 61.491 66.667 0.00 0.00 39.24 5.34
535 538 1.148157 GATCGATGGACCTGCACACG 61.148 60.000 0.54 0.00 0.00 4.49
536 539 0.108186 TGATCGATGGACCTGCACAC 60.108 55.000 0.54 0.00 0.00 3.82
537 540 0.108186 GTGATCGATGGACCTGCACA 60.108 55.000 0.54 0.00 0.00 4.57
538 541 0.176680 AGTGATCGATGGACCTGCAC 59.823 55.000 0.54 2.53 0.00 4.57
539 542 0.904649 AAGTGATCGATGGACCTGCA 59.095 50.000 0.54 0.00 0.00 4.41
540 543 1.134699 TGAAGTGATCGATGGACCTGC 60.135 52.381 0.54 0.00 0.00 4.85
541 544 2.544685 GTGAAGTGATCGATGGACCTG 58.455 52.381 0.54 0.00 0.00 4.00
542 545 1.135139 CGTGAAGTGATCGATGGACCT 59.865 52.381 0.54 0.00 0.00 3.85
543 546 1.560923 CGTGAAGTGATCGATGGACC 58.439 55.000 0.54 0.00 0.00 4.46
544 547 1.135083 ACCGTGAAGTGATCGATGGAC 60.135 52.381 0.54 0.00 0.00 4.02
545 548 1.135112 CACCGTGAAGTGATCGATGGA 60.135 52.381 0.54 0.00 40.34 3.41
546 549 1.280982 CACCGTGAAGTGATCGATGG 58.719 55.000 0.54 0.00 40.34 3.51
547 550 1.280982 CCACCGTGAAGTGATCGATG 58.719 55.000 0.54 0.00 40.34 3.84
548 551 0.460284 GCCACCGTGAAGTGATCGAT 60.460 55.000 0.00 0.00 40.34 3.59
549 552 1.080093 GCCACCGTGAAGTGATCGA 60.080 57.895 0.00 0.00 40.34 3.59
550 553 1.374125 TGCCACCGTGAAGTGATCG 60.374 57.895 0.00 0.00 40.34 3.69
551 554 1.626654 CGTGCCACCGTGAAGTGATC 61.627 60.000 0.00 0.00 40.34 2.92
552 555 1.667830 CGTGCCACCGTGAAGTGAT 60.668 57.895 0.00 0.00 40.34 3.06
553 556 2.279851 CGTGCCACCGTGAAGTGA 60.280 61.111 0.00 0.00 40.34 3.41
554 557 3.345808 CCGTGCCACCGTGAAGTG 61.346 66.667 0.00 0.00 37.51 3.16
555 558 4.619227 CCCGTGCCACCGTGAAGT 62.619 66.667 0.00 0.00 0.00 3.01
566 569 0.524414 AAAGAAATTACGGCCCGTGC 59.476 50.000 21.20 2.90 41.39 5.34
567 570 1.131693 GGAAAGAAATTACGGCCCGTG 59.868 52.381 21.20 0.00 41.39 4.94
568 571 1.271488 TGGAAAGAAATTACGGCCCGT 60.271 47.619 15.63 15.63 44.35 5.28
569 572 1.455248 TGGAAAGAAATTACGGCCCG 58.545 50.000 0.00 0.00 0.00 6.13
570 573 3.945981 TTTGGAAAGAAATTACGGCCC 57.054 42.857 0.00 0.00 0.00 5.80
571 574 4.430007 GGATTTGGAAAGAAATTACGGCC 58.570 43.478 0.00 0.00 0.00 6.13
572 575 4.430007 GGGATTTGGAAAGAAATTACGGC 58.570 43.478 0.00 0.00 0.00 5.68
573 576 4.668289 CGGGATTTGGAAAGAAATTACGG 58.332 43.478 0.00 0.00 0.00 4.02
574 577 4.102649 GCGGGATTTGGAAAGAAATTACG 58.897 43.478 0.00 0.00 32.48 3.18
575 578 5.324784 AGCGGGATTTGGAAAGAAATTAC 57.675 39.130 0.00 0.00 0.00 1.89
576 579 5.105513 GGAAGCGGGATTTGGAAAGAAATTA 60.106 40.000 0.00 0.00 0.00 1.40
577 580 4.322725 GGAAGCGGGATTTGGAAAGAAATT 60.323 41.667 0.00 0.00 0.00 1.82
578 581 3.195610 GGAAGCGGGATTTGGAAAGAAAT 59.804 43.478 0.00 0.00 0.00 2.17
579 582 2.560981 GGAAGCGGGATTTGGAAAGAAA 59.439 45.455 0.00 0.00 0.00 2.52
580 583 2.167662 GGAAGCGGGATTTGGAAAGAA 58.832 47.619 0.00 0.00 0.00 2.52
581 584 1.615919 GGGAAGCGGGATTTGGAAAGA 60.616 52.381 0.00 0.00 0.00 2.52
582 585 0.817654 GGGAAGCGGGATTTGGAAAG 59.182 55.000 0.00 0.00 0.00 2.62
583 586 0.113385 TGGGAAGCGGGATTTGGAAA 59.887 50.000 0.00 0.00 0.00 3.13
584 587 0.113385 TTGGGAAGCGGGATTTGGAA 59.887 50.000 0.00 0.00 0.00 3.53
585 588 0.334676 ATTGGGAAGCGGGATTTGGA 59.665 50.000 0.00 0.00 0.00 3.53
586 589 1.194218 AATTGGGAAGCGGGATTTGG 58.806 50.000 0.00 0.00 0.00 3.28
587 590 2.418609 GGAAATTGGGAAGCGGGATTTG 60.419 50.000 0.00 0.00 0.00 2.32
588 591 1.831106 GGAAATTGGGAAGCGGGATTT 59.169 47.619 0.00 0.00 0.00 2.17
589 592 1.007118 AGGAAATTGGGAAGCGGGATT 59.993 47.619 0.00 0.00 0.00 3.01
590 593 0.631212 AGGAAATTGGGAAGCGGGAT 59.369 50.000 0.00 0.00 0.00 3.85
591 594 0.407918 AAGGAAATTGGGAAGCGGGA 59.592 50.000 0.00 0.00 0.00 5.14
592 595 0.532115 CAAGGAAATTGGGAAGCGGG 59.468 55.000 0.00 0.00 35.08 6.13
601 604 1.928868 ACCTGGCTCCAAGGAAATTG 58.071 50.000 10.13 0.00 38.74 2.32
602 605 2.702270 AACCTGGCTCCAAGGAAATT 57.298 45.000 10.13 0.00 0.00 1.82
603 606 2.702270 AAACCTGGCTCCAAGGAAAT 57.298 45.000 10.13 0.00 0.00 2.17
604 607 2.316108 GAAAACCTGGCTCCAAGGAAA 58.684 47.619 10.13 0.00 0.00 3.13
605 608 1.480498 GGAAAACCTGGCTCCAAGGAA 60.480 52.381 10.13 0.00 0.00 3.36
606 609 0.112412 GGAAAACCTGGCTCCAAGGA 59.888 55.000 10.13 0.00 0.00 3.36
607 610 0.900182 GGGAAAACCTGGCTCCAAGG 60.900 60.000 11.06 0.00 35.85 3.61
608 611 0.178964 TGGGAAAACCTGGCTCCAAG 60.179 55.000 11.06 0.00 41.11 3.61
609 612 0.263172 TTGGGAAAACCTGGCTCCAA 59.737 50.000 11.06 7.32 41.11 3.53
610 613 0.178964 CTTGGGAAAACCTGGCTCCA 60.179 55.000 11.06 2.19 41.11 3.86
611 614 0.112412 TCTTGGGAAAACCTGGCTCC 59.888 55.000 0.00 0.00 41.11 4.70
612 615 1.202940 ACTCTTGGGAAAACCTGGCTC 60.203 52.381 0.00 0.00 41.11 4.70
613 616 0.853530 ACTCTTGGGAAAACCTGGCT 59.146 50.000 0.00 0.00 41.11 4.75
614 617 2.579410 TACTCTTGGGAAAACCTGGC 57.421 50.000 0.00 0.00 41.11 4.85
615 618 6.041523 TGAATTTTACTCTTGGGAAAACCTGG 59.958 38.462 0.00 0.00 41.11 4.45
616 619 7.049799 TGAATTTTACTCTTGGGAAAACCTG 57.950 36.000 0.00 0.00 41.11 4.00
617 620 7.508977 TGATGAATTTTACTCTTGGGAAAACCT 59.491 33.333 0.00 0.00 41.11 3.50
618 621 7.666623 TGATGAATTTTACTCTTGGGAAAACC 58.333 34.615 0.00 0.00 40.81 3.27
619 622 8.360390 ACTGATGAATTTTACTCTTGGGAAAAC 58.640 33.333 0.00 0.00 0.00 2.43
620 623 8.359642 CACTGATGAATTTTACTCTTGGGAAAA 58.640 33.333 0.00 0.00 0.00 2.29
621 624 7.723616 TCACTGATGAATTTTACTCTTGGGAAA 59.276 33.333 0.00 0.00 0.00 3.13
622 625 7.230747 TCACTGATGAATTTTACTCTTGGGAA 58.769 34.615 0.00 0.00 0.00 3.97
623 626 6.778821 TCACTGATGAATTTTACTCTTGGGA 58.221 36.000 0.00 0.00 0.00 4.37
624 627 7.636150 ATCACTGATGAATTTTACTCTTGGG 57.364 36.000 0.00 0.00 38.69 4.12
625 628 9.388506 AGTATCACTGATGAATTTTACTCTTGG 57.611 33.333 1.42 0.00 38.69 3.61
668 671 5.221263 CCTGTGTACAGTGACTAAAGTGACT 60.221 44.000 10.80 0.00 43.14 3.41
677 680 2.293677 CGAGTTCCTGTGTACAGTGACT 59.706 50.000 10.80 12.50 42.27 3.41
698 701 1.289109 ACACAGTGACCGTATTGCGC 61.289 55.000 7.81 0.00 39.71 6.09
721 724 3.430895 GTGGTCGTATTTTCACGTCACAT 59.569 43.478 14.58 0.00 41.66 3.21
724 727 3.054166 CAGTGGTCGTATTTTCACGTCA 58.946 45.455 0.00 0.00 42.51 4.35
725 728 3.311106 TCAGTGGTCGTATTTTCACGTC 58.689 45.455 0.00 0.00 42.51 4.34
726 729 3.243636 ACTCAGTGGTCGTATTTTCACGT 60.244 43.478 0.00 0.00 42.51 4.49
727 730 3.121279 CACTCAGTGGTCGTATTTTCACG 59.879 47.826 0.00 0.00 43.28 4.35
739 742 0.539901 AGTCTACGGCACTCAGTGGT 60.540 55.000 7.00 0.00 33.64 4.16
740 743 0.109086 CAGTCTACGGCACTCAGTGG 60.109 60.000 7.00 0.00 33.64 4.00
746 749 0.675837 TACGAGCAGTCTACGGCACT 60.676 55.000 7.94 0.00 39.54 4.40
825 828 1.675641 CCCTCCCGCAAAAGGACAG 60.676 63.158 0.00 0.00 34.35 3.51
859 862 2.119495 GGGGATTTCTAGCTGACCAGA 58.881 52.381 0.00 0.00 0.00 3.86
889 894 2.741878 CGGCGAACTATGGATTTGGAGT 60.742 50.000 0.00 0.00 0.00 3.85
922 936 2.655364 CGTGGCGGCGATGACTAG 60.655 66.667 12.98 0.00 0.00 2.57
923 937 4.865761 GCGTGGCGGCGATGACTA 62.866 66.667 12.98 0.00 0.00 2.59
973 989 4.754667 GTCGTCGGGGGCAAGGAC 62.755 72.222 0.00 0.00 0.00 3.85
975 991 4.323477 TTGTCGTCGGGGGCAAGG 62.323 66.667 0.00 0.00 0.00 3.61
991 1028 1.160137 GCAGAAGACATGGCGAAGTT 58.840 50.000 0.00 0.00 0.00 2.66
1055 1092 2.002407 TGAGGGCATGGGATGAGCA 61.002 57.895 0.00 0.00 0.00 4.26
1068 1437 4.392921 CACTATTGACTGGTAGTGAGGG 57.607 50.000 6.68 0.00 46.75 4.30
1076 1445 3.514309 GTGGTACCTCACTATTGACTGGT 59.486 47.826 14.36 0.60 35.15 4.00
1144 1513 7.062749 TCAAGTTACTTACTGAGTGATTGGT 57.937 36.000 0.00 0.00 39.48 3.67
1172 1554 5.406649 TGCAACTTTGACAAGAACGAAATT 58.593 33.333 0.00 0.00 33.72 1.82
1185 1567 6.746364 GCAAAATGTGAAAAATGCAACTTTGA 59.254 30.769 0.00 0.00 34.10 2.69
1188 1570 6.316890 AGAGCAAAATGTGAAAAATGCAACTT 59.683 30.769 0.00 0.00 36.30 2.66
1189 1571 5.818857 AGAGCAAAATGTGAAAAATGCAACT 59.181 32.000 0.00 0.00 36.30 3.16
1190 1572 6.051646 AGAGCAAAATGTGAAAAATGCAAC 57.948 33.333 0.00 0.00 36.30 4.17
1191 1573 6.487960 CAAGAGCAAAATGTGAAAAATGCAA 58.512 32.000 0.00 0.00 36.30 4.08
1192 1574 5.504337 GCAAGAGCAAAATGTGAAAAATGCA 60.504 36.000 0.00 0.00 41.58 3.96
1196 1578 6.544622 CAAAGCAAGAGCAAAATGTGAAAAA 58.455 32.000 0.00 0.00 45.49 1.94
1216 1640 0.250901 ACACCCAGTAGGCTGCAAAG 60.251 55.000 5.14 0.00 41.26 2.77
1237 1661 3.766545 TCCATCTCCCAAAACCAGAAAG 58.233 45.455 0.00 0.00 0.00 2.62
1307 1731 3.990092 TGTTGCTCTAACGACATCAACT 58.010 40.909 0.00 0.00 42.34 3.16
1320 1744 1.627834 CCTCCTCTCCTTTGTTGCTCT 59.372 52.381 0.00 0.00 0.00 4.09
1347 1771 7.125792 TCCTTCCATTCCTAGTCTTAATGAC 57.874 40.000 0.00 0.00 45.67 3.06
1354 1778 5.101529 TCCTTTTCCTTCCATTCCTAGTCT 58.898 41.667 0.00 0.00 0.00 3.24
1356 1780 6.190587 CAATCCTTTTCCTTCCATTCCTAGT 58.809 40.000 0.00 0.00 0.00 2.57
1383 1807 2.685388 CTCTATCAGTTGCCAGTCGAGA 59.315 50.000 0.00 0.00 0.00 4.04
1449 1874 4.041938 TCCCATCAATGCACTATCATGCTA 59.958 41.667 0.00 0.00 46.28 3.49
1454 1879 5.073554 ACCTAATCCCATCAATGCACTATCA 59.926 40.000 0.00 0.00 0.00 2.15
1469 1894 3.495806 CCAAGATCTCTGCACCTAATCCC 60.496 52.174 0.00 0.00 0.00 3.85
1511 1936 0.036010 ACAGCAGCATCACACTACCC 60.036 55.000 0.00 0.00 0.00 3.69
1527 1952 0.107456 AGAACACAGAGGGCACACAG 59.893 55.000 0.00 0.00 0.00 3.66
1641 2762 7.230510 TCACTACCAAAATGAGCACTTGTATTT 59.769 33.333 0.00 0.00 0.00 1.40
1644 2765 5.616270 TCACTACCAAAATGAGCACTTGTA 58.384 37.500 0.00 0.00 0.00 2.41
1772 2920 7.572523 TTTCATACATTTCTGGCCTTGATAG 57.427 36.000 3.32 0.00 0.00 2.08
1774 2922 6.608405 TCATTTCATACATTTCTGGCCTTGAT 59.392 34.615 3.32 0.00 0.00 2.57
1890 3165 9.253832 ACACACCATTTATTTCCATTTCAGATA 57.746 29.630 0.00 0.00 0.00 1.98
1891 3166 8.137745 ACACACCATTTATTTCCATTTCAGAT 57.862 30.769 0.00 0.00 0.00 2.90
1892 3167 7.537596 ACACACCATTTATTTCCATTTCAGA 57.462 32.000 0.00 0.00 0.00 3.27
1893 3168 9.304731 CATACACACCATTTATTTCCATTTCAG 57.695 33.333 0.00 0.00 0.00 3.02
1894 3169 9.029368 TCATACACACCATTTATTTCCATTTCA 57.971 29.630 0.00 0.00 0.00 2.69
1899 3174 9.076781 CCATATCATACACACCATTTATTTCCA 57.923 33.333 0.00 0.00 0.00 3.53
1900 3175 9.077885 ACCATATCATACACACCATTTATTTCC 57.922 33.333 0.00 0.00 0.00 3.13
1902 3177 9.866655 AGACCATATCATACACACCATTTATTT 57.133 29.630 0.00 0.00 0.00 1.40
1924 3199 9.136323 ACCAATGAATTCCATTTTAGATAGACC 57.864 33.333 2.27 0.00 42.55 3.85
1961 3236 9.050154 ACCCATTCTTTCCATTTCAGAAATATT 57.950 29.630 8.12 0.00 33.01 1.28
2040 3330 7.558161 TTATTGATGTCAATACTGCTTCCAG 57.442 36.000 13.48 0.00 45.40 3.86
2062 3353 9.230122 TGTCTTCTCATGCTTGTCATTTTATTA 57.770 29.630 0.00 0.00 31.79 0.98
2120 3412 2.606725 GCTACTGCTGATGCACTACAAG 59.393 50.000 0.00 0.00 45.31 3.16
2327 3748 0.038526 CAGCAAAAAGGAGCAGCTGG 60.039 55.000 17.12 0.00 46.55 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.