Multiple sequence alignment - TraesCS5B01G062700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G062700 chr5B 100.000 8935 0 0 1 8935 70402797 70393863 0.000000e+00 16500.0
1 TraesCS5B01G062700 chr5B 91.736 363 27 2 5818 6178 506237151 506236790 1.340000e-137 501.0
2 TraesCS5B01G062700 chr5B 88.818 313 10 5 5420 5708 217909405 217909094 2.370000e-95 361.0
3 TraesCS5B01G062700 chr5B 92.857 98 5 1 5663 5760 506237257 506237162 3.360000e-29 141.0
4 TraesCS5B01G062700 chr5B 79.327 208 32 6 5163 5359 130811525 130811732 1.560000e-27 135.0
5 TraesCS5B01G062700 chr5D 98.173 1806 25 7 2478 4280 60247626 60249426 0.000000e+00 3145.0
6 TraesCS5B01G062700 chr5D 95.153 1836 49 14 7134 8931 60249414 60251247 0.000000e+00 2861.0
7 TraesCS5B01G062700 chr5D 96.277 1316 35 6 1 1315 60245047 60246349 0.000000e+00 2146.0
8 TraesCS5B01G062700 chr5D 96.830 757 23 1 1554 2310 60246890 60247645 0.000000e+00 1264.0
9 TraesCS5B01G062700 chr5D 91.484 364 28 2 5817 6178 442382800 442383162 1.730000e-136 497.0
10 TraesCS5B01G062700 chr5D 89.954 219 10 6 1341 1551 60246348 60246562 1.140000e-68 272.0
11 TraesCS5B01G062700 chr5D 77.682 233 44 7 1641 1867 415270111 415270341 1.560000e-27 135.0
12 TraesCS5B01G062700 chr4B 92.184 2239 106 30 4270 6463 471433639 471431425 0.000000e+00 3101.0
13 TraesCS5B01G062700 chr4B 85.398 1130 103 40 4271 5359 642407317 642408425 0.000000e+00 1116.0
14 TraesCS5B01G062700 chr4B 84.651 645 77 17 6499 7133 642411410 642412042 2.740000e-174 623.0
15 TraesCS5B01G062700 chr4B 85.547 256 18 8 5417 5670 642410614 642410852 5.360000e-62 250.0
16 TraesCS5B01G062700 chr4B 81.250 208 28 6 5163 5359 660474673 660474880 3.340000e-34 158.0
17 TraesCS5B01G062700 chr5A 97.565 1807 34 5 2478 4280 48759585 48761385 0.000000e+00 3085.0
18 TraesCS5B01G062700 chr5A 94.654 1590 48 9 7134 8700 48761373 48762948 0.000000e+00 2431.0
19 TraesCS5B01G062700 chr5A 89.506 1477 93 26 105 1551 48757112 48758556 0.000000e+00 1812.0
20 TraesCS5B01G062700 chr5A 95.556 765 26 3 1553 2310 48758841 48759604 0.000000e+00 1218.0
21 TraesCS5B01G062700 chr5A 92.896 183 13 0 8745 8927 48762945 48763127 5.320000e-67 267.0
22 TraesCS5B01G062700 chr1B 97.506 1203 28 2 4276 5477 138660809 138659608 0.000000e+00 2054.0
23 TraesCS5B01G062700 chr1B 96.639 714 23 1 6424 7136 138659076 138658363 0.000000e+00 1184.0
24 TraesCS5B01G062700 chr1B 98.905 548 5 1 5909 6455 138659616 138659069 0.000000e+00 977.0
25 TraesCS5B01G062700 chr1B 100.000 169 0 0 2311 2479 225811970 225811802 6.740000e-81 313.0
26 TraesCS5B01G062700 chr1B 92.857 98 5 1 5663 5760 31377764 31377859 3.360000e-29 141.0
27 TraesCS5B01G062700 chr1B 86.957 69 5 3 1643 1708 638906960 638906893 3.460000e-09 75.0
28 TraesCS5B01G062700 chr7D 87.479 1182 90 33 4277 5413 48357308 48358476 0.000000e+00 1310.0
29 TraesCS5B01G062700 chr7D 81.274 1052 121 43 4276 5281 634642055 634641034 0.000000e+00 782.0
30 TraesCS5B01G062700 chr7D 91.689 373 28 2 5817 6187 504423189 504423560 1.720000e-141 514.0
31 TraesCS5B01G062700 chr7D 91.421 373 29 2 5817 6187 526509879 526509508 8.000000e-140 508.0
32 TraesCS5B01G062700 chr7D 92.562 242 18 0 6892 7133 634639735 634639494 1.850000e-91 348.0
33 TraesCS5B01G062700 chr7D 92.857 98 5 1 5663 5760 526509984 526509889 3.360000e-29 141.0
34 TraesCS5B01G062700 chr6A 86.163 1178 94 36 4277 5408 55295682 55296836 0.000000e+00 1208.0
35 TraesCS5B01G062700 chr6A 83.385 644 69 20 6508 7133 55300188 55300811 6.060000e-156 562.0
36 TraesCS5B01G062700 chr6A 86.614 254 18 7 5417 5670 55299387 55299624 5.320000e-67 267.0
37 TraesCS5B01G062700 chr7A 85.533 1182 104 36 4277 5413 712816872 712818031 0.000000e+00 1173.0
38 TraesCS5B01G062700 chr7A 83.854 576 58 15 6570 7130 712821384 712821939 4.780000e-142 516.0
39 TraesCS5B01G062700 chr7A 87.088 364 39 6 4276 4639 64918371 64918016 1.080000e-108 405.0
40 TraesCS5B01G062700 chr7A 83.679 386 50 12 4276 4651 18944627 18944245 1.430000e-92 351.0
41 TraesCS5B01G062700 chr7A 87.402 254 15 7 5417 5670 712820573 712820809 8.840000e-70 276.0
42 TraesCS5B01G062700 chr1A 85.461 1183 104 33 4276 5413 149595840 149596999 0.000000e+00 1170.0
43 TraesCS5B01G062700 chr1A 84.507 568 55 16 6580 7133 149600659 149601207 1.710000e-146 531.0
44 TraesCS5B01G062700 chr1A 100.000 169 0 0 2311 2479 543930884 543931052 6.740000e-81 313.0
45 TraesCS5B01G062700 chr1A 86.614 254 18 6 5417 5670 149599543 149599780 5.320000e-67 267.0
46 TraesCS5B01G062700 chr1A 85.437 103 13 1 1902 2004 487330503 487330403 1.230000e-18 106.0
47 TraesCS5B01G062700 chr2B 84.229 1135 101 45 4318 5397 93929388 93928277 0.000000e+00 1033.0
48 TraesCS5B01G062700 chr2B 83.987 637 65 19 6516 7142 93904978 93904369 2.160000e-160 577.0
49 TraesCS5B01G062700 chr2B 90.237 379 33 3 5817 6192 59475293 59474916 8.060000e-135 492.0
50 TraesCS5B01G062700 chr2B 90.617 373 32 2 5817 6187 375201794 375201423 8.060000e-135 492.0
51 TraesCS5B01G062700 chr2B 98.315 178 2 1 2311 2487 265221328 265221505 2.420000e-80 311.0
52 TraesCS5B01G062700 chr2B 93.878 98 4 1 5663 5760 222488817 222488912 7.230000e-31 147.0
53 TraesCS5B01G062700 chr2B 92.857 98 5 1 5663 5760 59475398 59475303 3.360000e-29 141.0
54 TraesCS5B01G062700 chr3B 85.481 978 86 31 4277 5219 261407820 261408776 0.000000e+00 968.0
55 TraesCS5B01G062700 chr3B 84.423 719 75 19 4277 4978 626091976 626091278 0.000000e+00 673.0
56 TraesCS5B01G062700 chr3B 86.133 375 37 10 6766 7137 261450971 261451333 3.020000e-104 390.0
57 TraesCS5B01G062700 chr3B 100.000 170 0 0 2310 2479 556051948 556051779 1.870000e-81 315.0
58 TraesCS5B01G062700 chr3B 85.256 312 28 7 5417 5728 261411503 261411796 1.130000e-78 305.0
59 TraesCS5B01G062700 chr3B 83.271 269 31 7 6210 6465 626090551 626090284 1.500000e-57 235.0
60 TraesCS5B01G062700 chr3B 81.250 208 28 5 5163 5359 787677217 787677010 3.340000e-34 158.0
61 TraesCS5B01G062700 chr3B 88.430 121 11 2 5626 5746 626090724 626090607 9.350000e-30 143.0
62 TraesCS5B01G062700 chr3B 73.171 205 43 11 1657 1852 628801078 628800877 7.490000e-06 63.9
63 TraesCS5B01G062700 chr3A 91.153 373 30 2 5817 6187 474443828 474444199 3.720000e-138 503.0
64 TraesCS5B01G062700 chr3A 100.000 28 0 0 1659 1686 722447877 722447850 1.600000e-02 52.8
65 TraesCS5B01G062700 chr4A 83.495 515 59 19 4276 4781 355263428 355262931 2.940000e-124 457.0
66 TraesCS5B01G062700 chr4A 85.339 457 40 20 4277 4722 183848010 183847570 1.770000e-121 448.0
67 TraesCS5B01G062700 chr4A 77.403 593 103 27 6565 7133 183847012 183846427 3.110000e-84 324.0
68 TraesCS5B01G062700 chr2A 100.000 170 0 0 2310 2479 639066128 639065959 1.870000e-81 315.0
69 TraesCS5B01G062700 chr7B 100.000 169 0 0 2311 2479 645125162 645124994 6.740000e-81 313.0
70 TraesCS5B01G062700 chr7B 100.000 169 0 0 2311 2479 699828078 699827910 6.740000e-81 313.0
71 TraesCS5B01G062700 chr7B 100.000 169 0 0 2311 2479 700410739 700410907 6.740000e-81 313.0
72 TraesCS5B01G062700 chr7B 92.857 98 5 1 5663 5760 743565527 743565432 3.360000e-29 141.0
73 TraesCS5B01G062700 chr6B 96.237 186 4 3 2297 2479 46961782 46961967 1.460000e-77 302.0
74 TraesCS5B01G062700 chr4D 83.333 336 45 8 4454 4781 506350468 506350136 5.240000e-77 300.0
75 TraesCS5B01G062700 chr1D 81.250 208 28 6 5163 5359 333615282 333615489 3.340000e-34 158.0
76 TraesCS5B01G062700 chr3D 92.857 98 5 1 5663 5760 588084766 588084861 3.360000e-29 141.0
77 TraesCS5B01G062700 chr3D 77.561 205 41 4 1654 1853 488906949 488906745 1.580000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G062700 chr5B 70393863 70402797 8934 True 16500.000000 16500 100.000000 1 8935 1 chr5B.!!$R1 8934
1 TraesCS5B01G062700 chr5D 60245047 60251247 6200 False 1937.600000 3145 95.277400 1 8931 5 chr5D.!!$F3 8930
2 TraesCS5B01G062700 chr4B 471431425 471433639 2214 True 3101.000000 3101 92.184000 4270 6463 1 chr4B.!!$R1 2193
3 TraesCS5B01G062700 chr4B 642407317 642412042 4725 False 663.000000 1116 85.198667 4271 7133 3 chr4B.!!$F2 2862
4 TraesCS5B01G062700 chr5A 48757112 48763127 6015 False 1762.600000 3085 94.035400 105 8927 5 chr5A.!!$F1 8822
5 TraesCS5B01G062700 chr1B 138658363 138660809 2446 True 1405.000000 2054 97.683333 4276 7136 3 chr1B.!!$R3 2860
6 TraesCS5B01G062700 chr7D 48357308 48358476 1168 False 1310.000000 1310 87.479000 4277 5413 1 chr7D.!!$F1 1136
7 TraesCS5B01G062700 chr7D 634639494 634642055 2561 True 565.000000 782 86.918000 4276 7133 2 chr7D.!!$R2 2857
8 TraesCS5B01G062700 chr6A 55295682 55300811 5129 False 679.000000 1208 85.387333 4277 7133 3 chr6A.!!$F1 2856
9 TraesCS5B01G062700 chr7A 712816872 712821939 5067 False 655.000000 1173 85.596333 4277 7130 3 chr7A.!!$F1 2853
10 TraesCS5B01G062700 chr1A 149595840 149601207 5367 False 656.000000 1170 85.527333 4276 7133 3 chr1A.!!$F2 2857
11 TraesCS5B01G062700 chr2B 93928277 93929388 1111 True 1033.000000 1033 84.229000 4318 5397 1 chr2B.!!$R2 1079
12 TraesCS5B01G062700 chr2B 93904369 93904978 609 True 577.000000 577 83.987000 6516 7142 1 chr2B.!!$R1 626
13 TraesCS5B01G062700 chr3B 261407820 261411796 3976 False 636.500000 968 85.368500 4277 5728 2 chr3B.!!$F2 1451
14 TraesCS5B01G062700 chr3B 626090284 626091976 1692 True 350.333333 673 85.374667 4277 6465 3 chr3B.!!$R4 2188
15 TraesCS5B01G062700 chr4A 183846427 183848010 1583 True 386.000000 448 81.371000 4277 7133 2 chr4A.!!$R2 2856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 840 4.506255 CATCCCCCTTCCCGCCAC 62.506 72.222 0.00 0.0 0.00 5.01 F
1338 1360 0.034477 AAGTAGGATTTGGGGCGTGG 60.034 55.000 0.00 0.0 0.00 4.94 F
2438 2832 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.0 0.00 4.94 F
2483 2877 0.036164 TTACCACTGCGCCAATGACT 59.964 50.000 4.18 0.0 0.00 3.41 F
2682 3076 1.338105 TGATGCTCCTGTCGGTCTTTG 60.338 52.381 0.00 0.0 0.00 2.77 F
4059 4459 2.432628 CGCCTCTTTCGCCGAACT 60.433 61.111 0.00 0.0 0.00 3.01 F
4486 4887 1.007387 GCCACTCCTGTTTTTGCCG 60.007 57.895 0.00 0.0 0.00 5.69 F
5965 9190 0.530744 CTAGGCACAAGTCGTAGCCA 59.469 55.000 5.01 0.0 41.54 4.75 F
6849 10881 1.701024 CCTGGGATGGGGATTGGGA 60.701 63.158 0.00 0.0 0.00 4.37 F
7495 11884 2.998670 CTGATGGTGTTGACTGCACTAG 59.001 50.000 0.00 0.0 37.07 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 2822 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 R
2449 2843 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33 R
4050 4450 1.164411 AATTCATGCAAGTTCGGCGA 58.836 45.000 4.99 4.99 0.00 5.54 R
4273 4673 5.293324 GTGGCAAAAACAAAGTTTTCCCTAG 59.707 40.000 17.85 0.00 0.00 3.02 R
4393 4793 5.622770 GTCAAAACGTCCATTGACCTAAT 57.377 39.130 21.77 0.00 46.10 1.73 R
5843 9068 1.521681 GACCTGTATCCGCTGGTGC 60.522 63.158 0.00 0.00 40.14 5.01 R
6146 9373 1.189524 ACCCAGGCTGCGTACAGTAA 61.190 55.000 9.56 0.00 46.30 2.24 R
7268 11657 0.173708 CCGAGAAAGAGAGAACGGGG 59.826 60.000 0.00 0.00 37.28 5.73 R
7807 12202 0.179936 CTCCAGGGCCTCAGCTAAAG 59.820 60.000 0.95 0.00 39.73 1.85 R
8865 13288 0.542805 GGGTACTCCGTTTATGGCCA 59.457 55.000 8.56 8.56 33.83 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.201242 AGCCCAACTTTTTCCAATAGATTTAA 57.799 30.769 0.00 0.00 0.00 1.52
475 487 7.725818 TTGCAAACATCATTCAAAGCAAATA 57.274 28.000 0.00 0.00 37.74 1.40
818 840 4.506255 CATCCCCCTTCCCGCCAC 62.506 72.222 0.00 0.00 0.00 5.01
1191 1213 1.137404 CCTCAAGGCCAAATTCGCG 59.863 57.895 5.01 0.00 0.00 5.87
1298 1320 0.389687 GCAGCCCTCTCGCTCATATC 60.390 60.000 0.00 0.00 36.82 1.63
1313 1335 1.131638 ATATCCCTCCGCAAGAAGCA 58.868 50.000 0.00 0.00 46.13 3.91
1314 1336 0.178068 TATCCCTCCGCAAGAAGCAC 59.822 55.000 0.00 0.00 46.13 4.40
1315 1337 2.543067 ATCCCTCCGCAAGAAGCACC 62.543 60.000 0.00 0.00 46.13 5.01
1316 1338 2.032528 CCTCCGCAAGAAGCACCA 59.967 61.111 0.00 0.00 46.13 4.17
1317 1339 1.600636 CCTCCGCAAGAAGCACCAA 60.601 57.895 0.00 0.00 46.13 3.67
1318 1340 1.576421 CTCCGCAAGAAGCACCAAC 59.424 57.895 0.00 0.00 46.13 3.77
1319 1341 1.153066 TCCGCAAGAAGCACCAACA 60.153 52.632 0.00 0.00 46.13 3.33
1320 1342 0.749818 TCCGCAAGAAGCACCAACAA 60.750 50.000 0.00 0.00 46.13 2.83
1321 1343 0.318107 CCGCAAGAAGCACCAACAAG 60.318 55.000 0.00 0.00 46.13 3.16
1322 1344 0.381801 CGCAAGAAGCACCAACAAGT 59.618 50.000 0.00 0.00 46.13 3.16
1323 1345 1.601903 CGCAAGAAGCACCAACAAGTA 59.398 47.619 0.00 0.00 46.13 2.24
1324 1346 2.349817 CGCAAGAAGCACCAACAAGTAG 60.350 50.000 0.00 0.00 46.13 2.57
1325 1347 2.030805 GCAAGAAGCACCAACAAGTAGG 60.031 50.000 0.00 0.00 44.79 3.18
1326 1348 3.476552 CAAGAAGCACCAACAAGTAGGA 58.523 45.455 0.00 0.00 0.00 2.94
1327 1349 4.074970 CAAGAAGCACCAACAAGTAGGAT 58.925 43.478 0.00 0.00 0.00 3.24
1328 1350 4.373156 AGAAGCACCAACAAGTAGGATT 57.627 40.909 0.00 0.00 0.00 3.01
1329 1351 4.729868 AGAAGCACCAACAAGTAGGATTT 58.270 39.130 0.00 0.00 0.00 2.17
1330 1352 4.520492 AGAAGCACCAACAAGTAGGATTTG 59.480 41.667 0.00 0.00 0.00 2.32
1331 1353 3.157087 AGCACCAACAAGTAGGATTTGG 58.843 45.455 0.00 0.00 43.61 3.28
1332 1354 2.231235 GCACCAACAAGTAGGATTTGGG 59.769 50.000 4.34 0.00 42.49 4.12
1333 1355 2.825532 CACCAACAAGTAGGATTTGGGG 59.174 50.000 4.34 0.00 42.49 4.96
1334 1356 1.824852 CCAACAAGTAGGATTTGGGGC 59.175 52.381 0.00 0.00 35.76 5.80
1335 1357 1.472480 CAACAAGTAGGATTTGGGGCG 59.528 52.381 0.00 0.00 0.00 6.13
1336 1358 0.696501 ACAAGTAGGATTTGGGGCGT 59.303 50.000 0.00 0.00 0.00 5.68
1337 1359 1.094785 CAAGTAGGATTTGGGGCGTG 58.905 55.000 0.00 0.00 0.00 5.34
1338 1360 0.034477 AAGTAGGATTTGGGGCGTGG 60.034 55.000 0.00 0.00 0.00 4.94
1339 1361 1.205460 AGTAGGATTTGGGGCGTGGT 61.205 55.000 0.00 0.00 0.00 4.16
1437 1489 1.347378 TCAGCCTATGTCTTGTGTGCA 59.653 47.619 0.00 0.00 0.00 4.57
1494 1553 1.616159 TTGCTACTCCAGTTTTGGGC 58.384 50.000 0.00 0.00 45.10 5.36
1548 1607 3.010920 GGTGGACCTTTTTACCCTGGTAT 59.989 47.826 0.00 0.00 32.30 2.73
1549 1608 4.014406 GTGGACCTTTTTACCCTGGTATG 58.986 47.826 0.00 0.00 32.30 2.39
1550 1609 3.658705 TGGACCTTTTTACCCTGGTATGT 59.341 43.478 0.00 0.00 32.30 2.29
1551 1610 4.850963 TGGACCTTTTTACCCTGGTATGTA 59.149 41.667 0.00 0.00 32.30 2.29
1552 1611 5.045432 TGGACCTTTTTACCCTGGTATGTAG 60.045 44.000 0.00 0.00 32.30 2.74
1589 1976 7.935755 GGAAAGATCTATCATGAAGATGGTGAA 59.064 37.037 18.93 0.00 37.57 3.18
1633 2027 4.455877 GGGACCTTGTTCTGAACTTATGTG 59.544 45.833 20.18 6.76 0.00 3.21
1635 2029 5.179555 GGACCTTGTTCTGAACTTATGTGTC 59.820 44.000 20.18 15.78 0.00 3.67
1691 2085 2.287915 CCTTGTTGAAGGTGTTGTCTCG 59.712 50.000 0.00 0.00 43.63 4.04
1767 2161 2.203640 ACTGTCTCCGGCTGGACA 60.204 61.111 11.27 18.57 40.17 4.02
1853 2247 9.916397 GACTTAATCGTAGGTGTTAAATTCATG 57.084 33.333 0.00 0.00 0.00 3.07
1910 2304 6.706270 TCTTGTACTCCTTTTGTTGATGTCTC 59.294 38.462 0.00 0.00 0.00 3.36
1917 2311 2.957402 TTGTTGATGTCTCTGGCCTT 57.043 45.000 3.32 0.00 0.00 4.35
1979 2373 1.837439 ACAATGATGTAGAGGCCGGAA 59.163 47.619 5.05 0.00 38.24 4.30
2045 2439 2.573009 TGTGAATCAAGGAGCTGGATCA 59.427 45.455 0.00 0.00 0.00 2.92
2262 2656 1.017387 CGCTGCTACCCCAAAGAATC 58.983 55.000 0.00 0.00 0.00 2.52
2297 2691 6.751888 CGATGTTCTGTCATGTGTAATGACTA 59.248 38.462 16.88 5.38 46.25 2.59
2298 2692 7.436376 CGATGTTCTGTCATGTGTAATGACTAT 59.564 37.037 16.88 6.35 46.25 2.12
2299 2693 9.750125 GATGTTCTGTCATGTGTAATGACTATA 57.250 33.333 16.88 4.65 46.25 1.31
2301 2695 9.750125 TGTTCTGTCATGTGTAATGACTATATC 57.250 33.333 16.88 6.98 46.25 1.63
2302 2696 9.973450 GTTCTGTCATGTGTAATGACTATATCT 57.027 33.333 16.88 0.00 46.25 1.98
2317 2711 8.721133 TGACTATATCTTATGACTAAAGGGCA 57.279 34.615 0.00 0.00 37.36 5.36
2318 2712 8.807118 TGACTATATCTTATGACTAAAGGGCAG 58.193 37.037 0.00 0.00 35.79 4.85
2319 2713 7.616313 ACTATATCTTATGACTAAAGGGCAGC 58.384 38.462 0.00 0.00 35.79 5.25
2320 2714 3.560636 TCTTATGACTAAAGGGCAGCC 57.439 47.619 1.26 1.26 35.79 4.85
2321 2715 2.172717 TCTTATGACTAAAGGGCAGCCC 59.827 50.000 24.90 24.90 45.90 5.19
2331 2725 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2332 2726 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2333 2727 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2334 2728 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2335 2729 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
2341 2735 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2342 2736 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2343 2737 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2344 2738 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2347 2741 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2362 2756 3.400054 CAGGGTCGGGGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
2363 2757 4.735599 AGGGTCGGGGAAGGGTCC 62.736 72.222 0.00 0.00 44.10 4.46
2369 2763 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2370 2764 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2371 2765 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2372 2766 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2373 2767 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2374 2768 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2375 2769 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2376 2770 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2386 2780 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2387 2781 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2388 2782 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2389 2783 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2390 2784 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2391 2785 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2392 2786 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2393 2787 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2394 2788 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2395 2789 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2396 2790 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2397 2791 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2398 2792 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2399 2793 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2400 2794 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2401 2795 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2402 2796 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2403 2797 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2404 2798 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2405 2799 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2406 2800 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2407 2801 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2408 2802 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2409 2803 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2410 2804 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2411 2805 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2412 2806 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2424 2818 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2425 2819 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2426 2820 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2427 2821 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2428 2822 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2429 2823 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2430 2824 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2431 2825 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2432 2826 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2433 2827 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2434 2828 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2435 2829 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2436 2830 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2437 2831 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2438 2832 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2439 2833 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2440 2834 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2441 2835 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2442 2836 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2443 2837 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2444 2838 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2445 2839 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2446 2840 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2457 2851 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2458 2852 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2459 2853 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2460 2854 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2461 2855 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2462 2856 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2463 2857 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2464 2858 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2465 2859 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2466 2860 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2467 2861 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2468 2862 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2469 2863 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2470 2864 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2471 2865 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2472 2866 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2476 2870 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2477 2871 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2478 2872 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2479 2873 0.609131 AGCTTTACCACTGCGCCAAT 60.609 50.000 4.18 0.00 0.00 3.16
2480 2874 0.456653 GCTTTACCACTGCGCCAATG 60.457 55.000 4.18 0.00 0.00 2.82
2481 2875 1.164411 CTTTACCACTGCGCCAATGA 58.836 50.000 4.18 0.00 0.00 2.57
2482 2876 0.878416 TTTACCACTGCGCCAATGAC 59.122 50.000 4.18 0.00 0.00 3.06
2483 2877 0.036164 TTACCACTGCGCCAATGACT 59.964 50.000 4.18 0.00 0.00 3.41
2682 3076 1.338105 TGATGCTCCTGTCGGTCTTTG 60.338 52.381 0.00 0.00 0.00 2.77
2779 3173 6.664816 TCCTGCCAATCATCTTACTTTTCATT 59.335 34.615 0.00 0.00 0.00 2.57
3111 3505 9.841295 AGGGCACTTTCGATAAATAATACTAAA 57.159 29.630 0.00 0.00 0.00 1.85
3195 3589 6.609616 AGGATCTTTAGTTAGTTCTCTCAGGG 59.390 42.308 0.00 0.00 0.00 4.45
3386 3783 3.930229 TGGTGCGAATGTGACACTATTAC 59.070 43.478 7.20 1.61 34.70 1.89
3496 3893 7.520453 GCTGTGATAAAGAACTGACAAATGTGA 60.520 37.037 0.00 0.00 0.00 3.58
4050 4450 4.236935 CACACAATTTATTGCGCCTCTTT 58.763 39.130 4.18 0.00 41.38 2.52
4059 4459 2.432628 CGCCTCTTTCGCCGAACT 60.433 61.111 0.00 0.00 0.00 3.01
4262 4662 6.747280 CAGCTAACTTAATTAACACACCATGC 59.253 38.462 0.00 0.00 0.00 4.06
4267 4667 5.943416 ACTTAATTAACACACCATGCTGCTA 59.057 36.000 0.00 0.00 0.00 3.49
4268 4668 6.432783 ACTTAATTAACACACCATGCTGCTAA 59.567 34.615 0.00 0.00 0.00 3.09
4269 4669 5.920193 AATTAACACACCATGCTGCTAAT 57.080 34.783 0.00 0.00 0.00 1.73
4273 4673 4.701956 ACACACCATGCTGCTAATAAAC 57.298 40.909 0.00 0.00 0.00 2.01
4347 4747 6.054295 GCCACTCTAGAATTCAACATCTCAT 58.946 40.000 8.44 0.00 0.00 2.90
4393 4793 9.571816 TGACAATATATCACAAATGCCATTCTA 57.428 29.630 0.00 0.00 0.00 2.10
4486 4887 1.007387 GCCACTCCTGTTTTTGCCG 60.007 57.895 0.00 0.00 0.00 5.69
4496 4897 7.065324 CACTCCTGTTTTTGCCGAATATTACTA 59.935 37.037 0.00 0.00 0.00 1.82
4774 5198 3.365364 GCTCCACACAAGTTGAACATAGC 60.365 47.826 10.54 8.90 0.00 2.97
4950 5454 1.570501 AGGTTCCATATGGCATGGTGT 59.429 47.619 17.58 0.00 40.06 4.16
5270 5839 1.961394 AGCATCTATGGCATTGGCTTG 59.039 47.619 4.78 4.39 40.87 4.01
5278 5847 6.175471 TCTATGGCATTGGCTTGTATATCTG 58.825 40.000 4.78 0.00 40.87 2.90
5605 8806 7.611467 TGCACTGTTCCATTATCTTGTTTCTAT 59.389 33.333 0.00 0.00 0.00 1.98
5623 8848 7.964867 TGTTTCTATATTACCAGGGATCCCATA 59.035 37.037 32.69 20.19 38.92 2.74
5624 8849 9.004231 GTTTCTATATTACCAGGGATCCCATAT 57.996 37.037 32.69 24.82 38.92 1.78
5677 8902 5.772672 TGTACCAATGCCATGACTTTTTACT 59.227 36.000 0.00 0.00 0.00 2.24
5679 8904 4.832266 ACCAATGCCATGACTTTTTACTGA 59.168 37.500 0.00 0.00 0.00 3.41
5680 8905 5.304101 ACCAATGCCATGACTTTTTACTGAA 59.696 36.000 0.00 0.00 0.00 3.02
5813 9038 9.917129 TCTTTTCTCACGATTACAAAGTATACA 57.083 29.630 5.50 0.00 0.00 2.29
5889 9114 7.262772 AGTCGAATCGAATTCACCTATTAACA 58.737 34.615 7.01 0.00 37.72 2.41
5965 9190 0.530744 CTAGGCACAAGTCGTAGCCA 59.469 55.000 5.01 0.00 41.54 4.75
6146 9373 8.630054 TGGATTAAGCTAACAATGTTTACTGT 57.370 30.769 3.17 0.00 0.00 3.55
6411 9653 4.447290 TGAACAGATCAAACTCCAACGAA 58.553 39.130 0.00 0.00 34.30 3.85
6849 10881 1.701024 CCTGGGATGGGGATTGGGA 60.701 63.158 0.00 0.00 0.00 4.37
7042 11430 8.573885 AGAATGGCATTTGTGATATATTGTCAG 58.426 33.333 14.93 0.00 0.00 3.51
7268 11657 6.454795 TCTTAGTGGCATTTTGAATTGAACC 58.545 36.000 0.00 0.00 0.00 3.62
7398 11787 7.433680 ACTTAAAATCAGTCCCAATTGTCAAC 58.566 34.615 4.43 0.00 0.00 3.18
7495 11884 2.998670 CTGATGGTGTTGACTGCACTAG 59.001 50.000 0.00 0.00 37.07 2.57
7656 12051 3.465742 TGGATAAGACATGCTCAGCTC 57.534 47.619 0.00 0.00 0.00 4.09
7807 12202 0.323725 TCAGGGCTTTGGGATTCAGC 60.324 55.000 0.00 0.00 0.00 4.26
7938 12333 4.279671 AGGAGTATCTGGAATGCTAGAACG 59.720 45.833 0.00 0.00 35.12 3.95
8161 12557 1.678627 CTGGACCTGATCTACCAGTCG 59.321 57.143 14.89 0.00 43.16 4.18
8234 12632 4.526970 ACTTGACAAATCAGTGACACCTT 58.473 39.130 0.84 0.00 35.83 3.50
8286 12684 5.106078 GGTAGAATAACGGCATGGTTTTCAA 60.106 40.000 0.00 0.00 0.00 2.69
8307 12705 1.254284 CCAAATTGTTAGCCGGGCCA 61.254 55.000 17.02 3.52 0.00 5.36
8323 12721 2.616842 GGGCCATGAAATTGTAGGTACG 59.383 50.000 4.39 0.00 0.00 3.67
8326 12724 3.936453 GCCATGAAATTGTAGGTACGTCA 59.064 43.478 0.00 0.00 0.00 4.35
8403 12803 6.461110 AAATGATACTGAAAGGGCATCTTG 57.539 37.500 0.00 0.00 39.30 3.02
8700 13123 4.377839 TTCAGCTCTCACTTCCTAATCG 57.622 45.455 0.00 0.00 0.00 3.34
8706 13129 3.628008 TCTCACTTCCTAATCGCAGGTA 58.372 45.455 0.00 0.00 36.99 3.08
8722 13145 3.617263 GCAGGTACCTTTTAGACACATCG 59.383 47.826 13.15 0.00 0.00 3.84
8733 13156 1.137086 AGACACATCGTATGCTGACCC 59.863 52.381 0.00 0.00 0.00 4.46
8922 13345 2.142761 TCTCACTGCAGCCCACACT 61.143 57.895 15.27 0.00 0.00 3.55
8927 13350 1.375652 CTGCAGCCCACACTCTCTG 60.376 63.158 0.00 0.00 0.00 3.35
8928 13351 2.046507 GCAGCCCACACTCTCTGG 60.047 66.667 0.00 0.00 0.00 3.86
8932 13355 2.667418 CCCACACTCTCTGGGCTG 59.333 66.667 0.00 0.00 42.22 4.85
8933 13356 2.219875 CCCACACTCTCTGGGCTGT 61.220 63.158 0.00 0.00 42.22 4.40
8934 13357 1.294780 CCACACTCTCTGGGCTGTC 59.705 63.158 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.654262 AGGTGATCCCGTGATATGTACTTT 59.346 41.667 0.00 0.00 38.74 2.66
451 463 6.621316 ATTTGCTTTGAATGATGTTTGCAA 57.379 29.167 0.00 0.00 37.39 4.08
1071 1093 2.022129 GTCGCACTCCTTCACGTGG 61.022 63.158 17.00 0.00 0.00 4.94
1191 1213 1.950973 GAGGCTGGAAGGACTCGGAC 61.951 65.000 0.00 0.00 31.19 4.79
1298 1320 2.747855 GGTGCTTCTTGCGGAGGG 60.748 66.667 0.00 0.00 46.63 4.30
1313 1335 2.821625 GCCCCAAATCCTACTTGTTGGT 60.822 50.000 0.00 0.00 39.13 3.67
1314 1336 1.824852 GCCCCAAATCCTACTTGTTGG 59.175 52.381 0.00 0.00 40.24 3.77
1315 1337 1.472480 CGCCCCAAATCCTACTTGTTG 59.528 52.381 0.00 0.00 0.00 3.33
1316 1338 1.074889 ACGCCCCAAATCCTACTTGTT 59.925 47.619 0.00 0.00 0.00 2.83
1317 1339 0.696501 ACGCCCCAAATCCTACTTGT 59.303 50.000 0.00 0.00 0.00 3.16
1318 1340 1.094785 CACGCCCCAAATCCTACTTG 58.905 55.000 0.00 0.00 0.00 3.16
1319 1341 0.034477 CCACGCCCCAAATCCTACTT 60.034 55.000 0.00 0.00 0.00 2.24
1320 1342 1.205460 ACCACGCCCCAAATCCTACT 61.205 55.000 0.00 0.00 0.00 2.57
1321 1343 0.542805 TACCACGCCCCAAATCCTAC 59.457 55.000 0.00 0.00 0.00 3.18
1322 1344 0.542805 GTACCACGCCCCAAATCCTA 59.457 55.000 0.00 0.00 0.00 2.94
1323 1345 1.205460 AGTACCACGCCCCAAATCCT 61.205 55.000 0.00 0.00 0.00 3.24
1324 1346 0.746923 GAGTACCACGCCCCAAATCC 60.747 60.000 0.00 0.00 0.00 3.01
1325 1347 0.252197 AGAGTACCACGCCCCAAATC 59.748 55.000 0.00 0.00 0.00 2.17
1326 1348 0.035439 CAGAGTACCACGCCCCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
1327 1349 1.373435 CAGAGTACCACGCCCCAAA 59.627 57.895 0.00 0.00 0.00 3.28
1328 1350 1.823169 GACAGAGTACCACGCCCCAA 61.823 60.000 0.00 0.00 0.00 4.12
1329 1351 2.203728 ACAGAGTACCACGCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
1330 1352 1.823169 TTGACAGAGTACCACGCCCC 61.823 60.000 0.00 0.00 0.00 5.80
1331 1353 0.034337 TTTGACAGAGTACCACGCCC 59.966 55.000 0.00 0.00 0.00 6.13
1332 1354 1.145803 GTTTGACAGAGTACCACGCC 58.854 55.000 0.00 0.00 0.00 5.68
1333 1355 1.860676 TGTTTGACAGAGTACCACGC 58.139 50.000 0.00 0.00 0.00 5.34
1334 1356 3.914312 AGATGTTTGACAGAGTACCACG 58.086 45.455 0.00 0.00 0.00 4.94
1335 1357 5.050091 CACAAGATGTTTGACAGAGTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
1336 1358 5.056480 CACAAGATGTTTGACAGAGTACCA 58.944 41.667 0.00 0.00 0.00 3.25
1337 1359 4.083802 GCACAAGATGTTTGACAGAGTACC 60.084 45.833 0.00 0.00 0.00 3.34
1338 1360 4.376413 CGCACAAGATGTTTGACAGAGTAC 60.376 45.833 0.00 0.00 0.00 2.73
1339 1361 3.740832 CGCACAAGATGTTTGACAGAGTA 59.259 43.478 0.00 0.00 0.00 2.59
1390 1442 3.131577 CCACCGCTCCAACATACTACTAA 59.868 47.826 0.00 0.00 0.00 2.24
1392 1444 1.480954 CCACCGCTCCAACATACTACT 59.519 52.381 0.00 0.00 0.00 2.57
1437 1489 2.687935 ACAAGGTGTTCAACGAAATGCT 59.312 40.909 0.00 0.00 0.00 3.79
1494 1553 2.364324 CCTGATCCCATCTTGCCATTTG 59.636 50.000 0.00 0.00 0.00 2.32
1548 1607 5.958380 AGATCTTTCCATAGTCACACCTACA 59.042 40.000 0.00 0.00 0.00 2.74
1549 1608 6.472686 AGATCTTTCCATAGTCACACCTAC 57.527 41.667 0.00 0.00 0.00 3.18
1550 1609 8.004801 TGATAGATCTTTCCATAGTCACACCTA 58.995 37.037 0.00 0.00 0.00 3.08
1551 1610 6.841229 TGATAGATCTTTCCATAGTCACACCT 59.159 38.462 0.00 0.00 0.00 4.00
1552 1611 7.055667 TGATAGATCTTTCCATAGTCACACC 57.944 40.000 0.00 0.00 0.00 4.16
1589 1976 2.485426 CAGACATGAAGCGGTGTTTCAT 59.515 45.455 0.00 3.45 42.51 2.57
1633 2027 2.017752 GCTGCTAAGCCCAATCGAC 58.982 57.895 0.00 0.00 44.22 4.20
1691 2085 0.955428 TGAAGACCAGCATCGGCAAC 60.955 55.000 0.00 0.00 44.61 4.17
1781 2175 1.920351 AGAATGGATAAACACCCCCGT 59.080 47.619 0.00 0.00 0.00 5.28
1853 2247 5.467705 ACTACGGTAGAAACATCACAAGAC 58.532 41.667 21.39 0.00 0.00 3.01
1979 2373 5.900865 TTTTCGAACAGGGTGTTAAAACT 57.099 34.783 0.00 0.00 41.28 2.66
2262 2656 4.058124 TGACAGAACATCGACCAAAGAAG 58.942 43.478 0.00 0.00 0.00 2.85
2297 2691 5.280727 GGGCTGCCCTTTAGTCATAAGATAT 60.281 44.000 30.42 0.00 41.34 1.63
2298 2692 4.041691 GGGCTGCCCTTTAGTCATAAGATA 59.958 45.833 30.42 0.00 41.34 1.98
2299 2693 3.181439 GGGCTGCCCTTTAGTCATAAGAT 60.181 47.826 30.42 0.00 41.34 2.40
2300 2694 2.172717 GGGCTGCCCTTTAGTCATAAGA 59.827 50.000 30.42 0.00 41.34 2.10
2301 2695 2.576615 GGGCTGCCCTTTAGTCATAAG 58.423 52.381 30.42 0.00 41.34 1.73
2302 2696 1.134220 CGGGCTGCCCTTTAGTCATAA 60.134 52.381 33.39 0.00 42.67 1.90
2303 2697 0.468226 CGGGCTGCCCTTTAGTCATA 59.532 55.000 33.39 0.00 42.67 2.15
2304 2698 1.224592 CGGGCTGCCCTTTAGTCAT 59.775 57.895 33.39 0.00 42.67 3.06
2305 2699 2.668632 CGGGCTGCCCTTTAGTCA 59.331 61.111 33.39 0.00 42.67 3.41
2306 2700 2.124695 CCGGGCTGCCCTTTAGTC 60.125 66.667 33.39 7.46 42.67 2.59
2307 2701 2.933834 ACCGGGCTGCCCTTTAGT 60.934 61.111 33.39 21.92 42.67 2.24
2308 2702 2.438434 CACCGGGCTGCCCTTTAG 60.438 66.667 33.39 21.30 42.67 1.85
2309 2703 4.733542 GCACCGGGCTGCCCTTTA 62.734 66.667 33.39 0.00 42.67 1.85
2314 2708 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2315 2709 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2316 2710 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2317 2711 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2318 2712 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2319 2713 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2345 2739 3.400054 GACCCTTCCCCGACCCTG 61.400 72.222 0.00 0.00 0.00 4.45
2346 2740 4.735599 GGACCCTTCCCCGACCCT 62.736 72.222 0.00 0.00 35.57 4.34
2352 2746 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2353 2747 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2354 2748 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2355 2749 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2356 2750 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2357 2751 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2358 2752 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2359 2753 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2360 2754 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2365 2759 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2366 2760 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2367 2761 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2368 2762 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2369 2763 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2370 2764 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2371 2765 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2372 2766 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2373 2767 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2374 2768 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2375 2769 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2376 2770 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2377 2771 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2378 2772 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2379 2773 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2380 2774 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2381 2775 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2382 2776 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2383 2777 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2384 2778 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2385 2779 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2386 2780 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2387 2781 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2388 2782 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2389 2783 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2390 2784 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2391 2785 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2392 2786 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2393 2787 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2394 2788 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2395 2789 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2396 2790 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2397 2791 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2398 2792 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2399 2793 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2400 2794 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2401 2795 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2402 2796 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2416 2810 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2417 2811 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2418 2812 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2419 2813 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2420 2814 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2421 2815 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2422 2816 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2423 2817 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2424 2818 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2425 2819 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2426 2820 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2427 2821 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2428 2822 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2429 2823 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2430 2824 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2440 2834 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2441 2835 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2442 2836 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2443 2837 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2444 2838 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2445 2839 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2446 2840 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2447 2841 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2448 2842 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2449 2843 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2450 2844 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2451 2845 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2452 2846 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2453 2847 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2454 2848 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2459 2853 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2460 2854 0.609131 ATTGGCGCAGTGGTAAAGCT 60.609 50.000 10.83 0.00 0.00 3.74
2461 2855 0.456653 CATTGGCGCAGTGGTAAAGC 60.457 55.000 10.83 0.00 0.00 3.51
2462 2856 1.135689 GTCATTGGCGCAGTGGTAAAG 60.136 52.381 10.83 0.00 0.00 1.85
2463 2857 0.878416 GTCATTGGCGCAGTGGTAAA 59.122 50.000 10.83 0.00 0.00 2.01
2464 2858 0.036164 AGTCATTGGCGCAGTGGTAA 59.964 50.000 10.83 0.00 0.00 2.85
2465 2859 0.899019 TAGTCATTGGCGCAGTGGTA 59.101 50.000 10.83 0.00 0.00 3.25
2466 2860 0.253044 ATAGTCATTGGCGCAGTGGT 59.747 50.000 10.83 0.00 0.00 4.16
2467 2861 2.238942 TATAGTCATTGGCGCAGTGG 57.761 50.000 10.83 0.00 0.00 4.00
2468 2862 3.657634 AGATATAGTCATTGGCGCAGTG 58.342 45.455 10.83 4.46 0.00 3.66
2469 2863 4.342862 AAGATATAGTCATTGGCGCAGT 57.657 40.909 10.83 0.00 0.00 4.40
2470 2864 6.035435 GTCATAAGATATAGTCATTGGCGCAG 59.965 42.308 10.83 0.00 0.00 5.18
2471 2865 5.869344 GTCATAAGATATAGTCATTGGCGCA 59.131 40.000 10.83 0.00 0.00 6.09
2472 2866 6.035435 CAGTCATAAGATATAGTCATTGGCGC 59.965 42.308 0.00 0.00 0.00 6.53
2473 2867 7.093354 ACAGTCATAAGATATAGTCATTGGCG 58.907 38.462 0.00 0.00 0.00 5.69
2474 2868 9.579768 CTACAGTCATAAGATATAGTCATTGGC 57.420 37.037 0.00 0.00 0.00 4.52
2475 2869 9.579768 GCTACAGTCATAAGATATAGTCATTGG 57.420 37.037 0.00 0.00 0.00 3.16
2478 2872 9.527157 AGTGCTACAGTCATAAGATATAGTCAT 57.473 33.333 0.00 0.00 0.00 3.06
2479 2873 8.926092 AGTGCTACAGTCATAAGATATAGTCA 57.074 34.615 0.00 0.00 0.00 3.41
2779 3173 0.251564 AAAACCATCACGGGCCATCA 60.252 50.000 4.39 0.00 40.22 3.07
3029 3423 1.825090 ACGCCAATGCTGAATTCTCA 58.175 45.000 7.05 5.30 34.43 3.27
3195 3589 4.883585 TGATTCACTGCCCATGATTAGTTC 59.116 41.667 0.00 0.00 0.00 3.01
3366 3763 4.625742 AGTGTAATAGTGTCACATTCGCAC 59.374 41.667 5.62 13.42 34.94 5.34
3367 3764 4.816392 AGTGTAATAGTGTCACATTCGCA 58.184 39.130 5.62 4.23 34.94 5.10
3368 3765 4.267928 GGAGTGTAATAGTGTCACATTCGC 59.732 45.833 5.62 5.02 31.71 4.70
3386 3783 6.840780 ATTATGTTTTTCCTTGGAGGAGTG 57.159 37.500 0.00 0.00 46.73 3.51
4050 4450 1.164411 AATTCATGCAAGTTCGGCGA 58.836 45.000 4.99 4.99 0.00 5.54
4059 4459 6.907741 TCGAAGAACACATAAATTCATGCAA 58.092 32.000 0.00 0.00 0.00 4.08
4262 4662 8.793592 ACAAAGTTTTCCCTAGTTTATTAGCAG 58.206 33.333 0.00 0.00 0.00 4.24
4268 4668 9.104965 GCAAAAACAAAGTTTTCCCTAGTTTAT 57.895 29.630 8.16 0.00 0.00 1.40
4269 4669 7.549842 GGCAAAAACAAAGTTTTCCCTAGTTTA 59.450 33.333 8.16 0.00 0.00 2.01
4273 4673 5.293324 GTGGCAAAAACAAAGTTTTCCCTAG 59.707 40.000 17.85 0.00 0.00 3.02
4393 4793 5.622770 GTCAAAACGTCCATTGACCTAAT 57.377 39.130 21.77 0.00 46.10 1.73
4496 4897 7.457024 ACCTAAACGTTACTTTAATGGCAAT 57.543 32.000 0.00 0.00 0.00 3.56
4774 5198 3.588955 TGTAGCTGATGCAACTACTGTG 58.411 45.455 15.93 0.00 42.74 3.66
4950 5454 6.920758 GTGCAACTACATGTTATTTTGTGGAA 59.079 34.615 2.30 0.00 37.07 3.53
5270 5839 6.382869 AAAATGTTGAGCCAGCAGATATAC 57.617 37.500 0.00 0.00 0.00 1.47
5338 5918 8.294577 TCATCTAATCTAAATGCAATGACATGC 58.705 33.333 0.00 0.00 46.58 4.06
5605 8806 4.855018 TGCAATATGGGATCCCTGGTAATA 59.145 41.667 31.05 19.54 36.94 0.98
5623 8848 7.039993 ATGTCATACATACATGCTGATTGCAAT 60.040 33.333 12.83 12.83 45.73 3.56
5624 8849 6.263617 ATGTCATACATACATGCTGATTGCAA 59.736 34.615 0.00 0.00 45.73 4.08
5797 9022 4.208460 CCAGCCGTGTATACTTTGTAATCG 59.792 45.833 4.17 0.00 0.00 3.34
5837 9062 3.390183 TATCCGCTGGTGCTGGCTG 62.390 63.158 0.00 0.00 36.97 4.85
5843 9068 1.521681 GACCTGTATCCGCTGGTGC 60.522 63.158 0.00 0.00 40.14 5.01
5856 9081 3.992260 ATTCGATTCGACTAGGACCTG 57.008 47.619 8.55 0.00 34.89 4.00
5889 9114 7.182930 AGGATTAGGAATTTGTAGTCCAAGTCT 59.817 37.037 10.39 0.00 41.01 3.24
6146 9373 1.189524 ACCCAGGCTGCGTACAGTAA 61.190 55.000 9.56 0.00 46.30 2.24
6411 9653 3.439857 TCTTTTTATGCTCCTGCTGGT 57.560 42.857 9.73 0.00 40.48 4.00
6678 10684 4.596180 GCCGACGCAATCCGCATG 62.596 66.667 0.00 0.00 42.60 4.06
6849 10881 3.949113 AGAAAATTTGTACACACACCCGT 59.051 39.130 0.00 0.00 33.30 5.28
7042 11430 9.245962 CATCTCATTTTTGCCATTCTTAGATTC 57.754 33.333 0.00 0.00 0.00 2.52
7268 11657 0.173708 CCGAGAAAGAGAGAACGGGG 59.826 60.000 0.00 0.00 37.28 5.73
7384 11773 2.814336 GACTGAGGTTGACAATTGGGAC 59.186 50.000 10.83 5.09 0.00 4.46
7398 11787 1.079266 GCTGCTCACCAGACTGAGG 60.079 63.158 3.32 0.00 44.64 3.86
7495 11884 1.555075 TCCTTGTGGTATCTGGCTCAC 59.445 52.381 0.00 0.00 34.23 3.51
7656 12051 7.862873 TGCAGTATCAGAACTACGAAATATCAG 59.137 37.037 0.00 0.00 0.00 2.90
7691 12086 5.163457 ACTCTCCAAGCTTATGTCTCTTAGC 60.163 44.000 0.00 0.00 0.00 3.09
7807 12202 0.179936 CTCCAGGGCCTCAGCTAAAG 59.820 60.000 0.95 0.00 39.73 1.85
8161 12557 4.281657 ACTAAGAAATCCCAGGAAATGCC 58.718 43.478 0.00 0.00 0.00 4.40
8199 12597 3.483808 TGTCAAGTTACCATCACAGCA 57.516 42.857 0.00 0.00 0.00 4.41
8234 12632 1.122632 TCGCAAACAGACCCACCCTA 61.123 55.000 0.00 0.00 0.00 3.53
8286 12684 1.254975 GCCCGGCTAACAATTTGGGT 61.255 55.000 0.71 0.00 38.93 4.51
8323 12721 4.010349 ACGGAATCCTCCTTGAAATTGAC 58.990 43.478 0.00 0.00 39.93 3.18
8326 12724 6.246163 AGTAAACGGAATCCTCCTTGAAATT 58.754 36.000 0.00 0.00 39.93 1.82
8383 12782 4.574674 ACAAGATGCCCTTTCAGTATCA 57.425 40.909 0.00 0.00 31.42 2.15
8479 12901 6.325286 GGAGGAGTAAGTCAGGAGATAAACAT 59.675 42.308 0.00 0.00 0.00 2.71
8483 12905 5.735733 AGGAGGAGTAAGTCAGGAGATAA 57.264 43.478 0.00 0.00 0.00 1.75
8659 13082 3.784701 ATACCGCACAACTACAGAGAG 57.215 47.619 0.00 0.00 0.00 3.20
8700 13123 3.617263 CGATGTGTCTAAAAGGTACCTGC 59.383 47.826 17.14 2.76 0.00 4.85
8706 13129 4.870426 CAGCATACGATGTGTCTAAAAGGT 59.130 41.667 0.00 0.00 0.00 3.50
8722 13145 1.144057 CTGTCCCGGGTCAGCATAC 59.856 63.158 30.62 16.19 0.00 2.39
8742 13165 2.618709 GGACTTGGATTTAGCGGATTGG 59.381 50.000 0.00 0.00 0.00 3.16
8807 13230 1.195900 GTGCGTTGAGTCGGCATTTTA 59.804 47.619 6.61 0.00 0.00 1.52
8864 13287 1.142262 GGGTACTCCGTTTATGGCCAT 59.858 52.381 24.45 24.45 33.83 4.40
8865 13288 0.542805 GGGTACTCCGTTTATGGCCA 59.457 55.000 8.56 8.56 33.83 5.36
8902 13325 2.359230 GTGGGCTGCAGTGAGACC 60.359 66.667 16.64 7.20 42.32 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.