Multiple sequence alignment - TraesCS5B01G062100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G062100 chr5B 100.000 7774 0 0 1 7774 69651175 69643402 0.000000e+00 14356.0
1 TraesCS5B01G062100 chr5B 100.000 81 0 0 8011 8091 69643165 69643085 5.060000e-32 150.0
2 TraesCS5B01G062100 chr5B 86.154 130 13 4 7646 7774 120945634 120945509 1.420000e-27 135.0
3 TraesCS5B01G062100 chr5A 96.890 4309 106 9 1558 5857 51035824 51040113 0.000000e+00 7190.0
4 TraesCS5B01G062100 chr5A 92.948 1489 77 17 5855 7330 51040192 51041665 0.000000e+00 2143.0
5 TraesCS5B01G062100 chr5A 89.731 1188 85 18 8 1184 51034052 51035213 0.000000e+00 1483.0
6 TraesCS5B01G062100 chr5A 92.346 405 18 9 1166 1560 51035235 51035636 1.520000e-156 564.0
7 TraesCS5B01G062100 chr5A 94.472 199 4 2 1488 1686 51035636 51035827 4.750000e-77 300.0
8 TraesCS5B01G062100 chr5A 96.296 81 3 0 5432 5512 49515377 49515297 5.090000e-27 134.0
9 TraesCS5B01G062100 chr5A 96.296 81 3 0 5432 5512 49957055 49956975 5.090000e-27 134.0
10 TraesCS5B01G062100 chr5D 96.198 3945 98 16 1 3933 61041902 61045806 0.000000e+00 6407.0
11 TraesCS5B01G062100 chr5D 95.113 3417 131 23 3932 7330 61045883 61049281 0.000000e+00 5352.0
12 TraesCS5B01G062100 chr5D 94.059 101 6 0 7487 7587 61049672 61049772 3.910000e-33 154.0
13 TraesCS5B01G062100 chr5D 89.109 101 7 2 7310 7410 61049386 61049482 1.100000e-23 122.0
14 TraesCS5B01G062100 chr7A 94.536 604 15 8 1371 1969 17070467 17071057 0.000000e+00 917.0
15 TraesCS5B01G062100 chr7A 96.341 82 3 0 2020 2101 17071046 17071127 1.420000e-27 135.0
16 TraesCS5B01G062100 chr3D 94.527 603 16 8 1371 1969 599578947 599579536 0.000000e+00 915.0
17 TraesCS5B01G062100 chr1A 91.339 127 10 1 7647 7773 519820967 519821092 1.080000e-38 172.0
18 TraesCS5B01G062100 chr6D 89.764 127 10 3 7648 7773 348092593 348092717 8.400000e-35 159.0
19 TraesCS5B01G062100 chr6B 86.154 130 13 4 7647 7774 99927765 99927891 1.420000e-27 135.0
20 TraesCS5B01G062100 chr3B 81.818 132 15 8 7646 7771 396712588 396712716 1.440000e-17 102.0
21 TraesCS5B01G062100 chr3B 82.222 90 12 4 7687 7774 53935123 53935036 3.130000e-09 75.0
22 TraesCS5B01G062100 chr3B 82.222 90 12 4 7687 7774 792726418 792726505 3.130000e-09 75.0
23 TraesCS5B01G062100 chr1B 81.818 132 15 8 7648 7774 588149345 588149218 1.440000e-17 102.0
24 TraesCS5B01G062100 chr7B 89.873 79 2 5 7644 7717 180694291 180694214 6.680000e-16 97.1
25 TraesCS5B01G062100 chr2B 90.541 74 2 4 7646 7714 154189405 154189478 8.650000e-15 93.5
26 TraesCS5B01G062100 chr2D 91.176 68 1 4 7652 7714 37905300 37905367 4.020000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G062100 chr5B 69643085 69651175 8090 True 7253.00 14356 100.00000 1 8091 2 chr5B.!!$R2 8090
1 TraesCS5B01G062100 chr5A 51034052 51041665 7613 False 2336.00 7190 93.27740 8 7330 5 chr5A.!!$F1 7322
2 TraesCS5B01G062100 chr5D 61041902 61049772 7870 False 3008.75 6407 93.61975 1 7587 4 chr5D.!!$F1 7586
3 TraesCS5B01G062100 chr7A 17070467 17071127 660 False 526.00 917 95.43850 1371 2101 2 chr7A.!!$F1 730
4 TraesCS5B01G062100 chr3D 599578947 599579536 589 False 915.00 915 94.52700 1371 1969 1 chr3D.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1001 0.106708 TTCTGTTGCGCTCTCTTGGT 59.893 50.000 9.73 0.00 0.00 3.67 F
2775 3034 0.330604 AGTGCCAGCAATCCAGTGAT 59.669 50.000 0.00 0.00 0.00 3.06 F
3111 3370 1.499502 GCTGCGGCTTTTGTCTCTC 59.500 57.895 11.21 0.00 35.22 3.20 F
4380 4717 1.065401 CAACGGCAGAAGCAACAAGAA 59.935 47.619 0.00 0.00 44.61 2.52 F
4869 5206 1.269723 CAAGAGTCACGCCAGTCACTA 59.730 52.381 0.00 0.00 29.60 2.74 F
6151 6591 1.212229 GGACACCGGAGTCGTTCTC 59.788 63.158 23.22 7.59 39.42 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2865 3124 0.533755 ACTGTTCCTCTGCAGTGCAC 60.534 55.000 15.37 9.40 43.45 4.57 R
4364 4701 0.670162 TGCTTCTTGTTGCTTCTGCC 59.330 50.000 0.00 0.00 38.71 4.85 R
4605 4942 1.021968 GGGTGACAACAAGCGACTTT 58.978 50.000 0.00 0.00 0.00 2.66 R
5215 5552 0.040067 CGCCTTCTTGCAGAACCAAC 60.040 55.000 0.00 0.00 29.89 3.77 R
6474 6914 1.000993 ATCAGCTCGGAGGTGGAGT 59.999 57.895 30.40 17.45 43.47 3.85 R
7692 8371 0.035152 TTACGTGGACTCCGGCTAGA 60.035 55.000 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 85 1.339291 TGCATTCATTTGCGTTGGTGA 59.661 42.857 0.00 0.00 45.77 4.02
108 114 3.758023 GCCCCCATTTTGAAGGATTTTTG 59.242 43.478 0.00 0.00 0.00 2.44
163 170 4.796038 AGCCATTCTTGTTTCTTGATGG 57.204 40.909 0.00 0.00 0.00 3.51
243 250 3.415212 TCTTCCAATCTTGTCTTGCAGG 58.585 45.455 0.00 0.00 0.00 4.85
386 393 2.391724 GAACTTGGGGACTCGTGGCA 62.392 60.000 0.00 0.00 0.00 4.92
630 637 3.528532 CCTTACCGTTTACCCAGTCATC 58.471 50.000 0.00 0.00 0.00 2.92
631 638 3.055675 CCTTACCGTTTACCCAGTCATCA 60.056 47.826 0.00 0.00 0.00 3.07
644 651 4.457603 CCCAGTCATCATTTTTGACCGTTA 59.542 41.667 0.46 0.00 43.62 3.18
651 658 5.446143 TCATTTTTGACCGTTATGTGCTT 57.554 34.783 0.00 0.00 0.00 3.91
653 660 3.907894 TTTTGACCGTTATGTGCTTCC 57.092 42.857 0.00 0.00 0.00 3.46
668 675 2.469465 CTTCCGCTGGCCTTCCTTGA 62.469 60.000 3.32 0.00 0.00 3.02
768 776 4.090819 GAGAGTCTCTTGGTTTCCTAGGT 58.909 47.826 13.17 0.00 0.00 3.08
833 843 6.788684 TTCGGTTTCGTTCATAAGAAATCA 57.211 33.333 2.76 0.00 37.33 2.57
851 861 8.604640 AGAAATCATCTGCATATAAGACAGTG 57.395 34.615 0.00 0.00 36.88 3.66
866 876 4.372656 AGACAGTGACTAACTTTCAGTGC 58.627 43.478 0.00 1.75 44.94 4.40
914 924 5.337652 GCCGGAAATAGATCTTATGTAGGCT 60.338 44.000 5.05 0.00 35.82 4.58
921 931 9.732130 AAATAGATCTTATGTAGGCTGATTTCC 57.268 33.333 0.00 0.00 0.00 3.13
925 935 4.163458 TCTTATGTAGGCTGATTTCCGGTT 59.837 41.667 0.00 0.00 0.00 4.44
936 946 5.289434 GCTGATTTCCGGTTGATTTGAATTC 59.711 40.000 0.00 0.00 0.00 2.17
991 1001 0.106708 TTCTGTTGCGCTCTCTTGGT 59.893 50.000 9.73 0.00 0.00 3.67
1129 1139 6.775708 TCAGGTAAATATATTGGGGCACTAC 58.224 40.000 0.00 0.00 0.00 2.73
1134 1144 1.502690 ATATTGGGGCACTACGGTCA 58.497 50.000 0.00 0.00 0.00 4.02
1135 1145 1.502690 TATTGGGGCACTACGGTCAT 58.497 50.000 0.00 0.00 0.00 3.06
1259 1311 3.412386 ACAGTTGTTATCCTTGCTGTCC 58.588 45.455 0.00 0.00 32.52 4.02
1336 1388 3.865745 ACGTCATTATCTTAGCAGTGTGC 59.134 43.478 0.00 0.00 45.46 4.57
1356 1408 4.508861 GTGCTGTGCATTTTCAAGTTCAAT 59.491 37.500 0.00 0.00 41.91 2.57
1447 1507 1.406539 CAAAAATGGCCCATCTCCTCG 59.593 52.381 0.00 0.00 0.00 4.63
1591 1723 5.190330 TGGATTAGGTTGTTTAGGAGGTACC 59.810 44.000 2.73 2.73 39.35 3.34
1592 1724 5.397221 GGATTAGGTTGTTTAGGAGGTACCC 60.397 48.000 8.74 0.00 40.05 3.69
1593 1725 2.272698 AGGTTGTTTAGGAGGTACCCC 58.727 52.381 8.74 9.85 40.05 4.95
1594 1726 2.157895 AGGTTGTTTAGGAGGTACCCCT 60.158 50.000 21.38 21.38 46.66 4.79
1595 1727 3.079534 AGGTTGTTTAGGAGGTACCCCTA 59.920 47.826 19.70 19.70 42.86 3.53
1596 1728 3.198635 GGTTGTTTAGGAGGTACCCCTAC 59.801 52.174 22.09 16.93 39.01 3.18
1631 1763 8.737168 TCTTGTGAGGAATCAATATAAGTTGG 57.263 34.615 0.00 0.00 0.00 3.77
1655 1904 3.942829 TGACCTGTCAACAATCTGGATC 58.057 45.455 0.00 0.00 36.53 3.36
1760 2014 3.133901 TGTACCACATGTGACACTGTTCT 59.866 43.478 27.46 0.00 0.00 3.01
1761 2015 4.342665 TGTACCACATGTGACACTGTTCTA 59.657 41.667 27.46 4.59 0.00 2.10
1762 2016 3.995199 ACCACATGTGACACTGTTCTAG 58.005 45.455 27.46 8.00 0.00 2.43
1763 2017 3.641436 ACCACATGTGACACTGTTCTAGA 59.359 43.478 27.46 0.00 0.00 2.43
1764 2018 4.240888 CCACATGTGACACTGTTCTAGAG 58.759 47.826 27.46 0.96 0.00 2.43
1985 2239 2.932261 ACTGTCTTGTTTGGGGAGAAC 58.068 47.619 0.00 0.00 0.00 3.01
1991 2245 5.163141 TGTCTTGTTTGGGGAGAACAGATTA 60.163 40.000 0.00 0.00 38.17 1.75
2415 2669 2.942752 GCCATCTGAAACTGCATCCTCA 60.943 50.000 0.00 0.00 0.00 3.86
2649 2908 7.228706 TCACAGGAAAATCAAGACCTTAAGAAC 59.771 37.037 3.36 0.00 0.00 3.01
2748 3007 1.406069 GGATCAGAGAAAGAAGCCGCA 60.406 52.381 0.00 0.00 0.00 5.69
2757 3016 0.947244 AAGAAGCCGCAGTTTCACAG 59.053 50.000 0.00 0.00 35.79 3.66
2775 3034 0.330604 AGTGCCAGCAATCCAGTGAT 59.669 50.000 0.00 0.00 0.00 3.06
2804 3063 6.240894 TGCAGAACCTCAAGTCTGAAATATT 58.759 36.000 4.89 0.00 32.38 1.28
2853 3112 5.105595 GCTAAAAGAGGAGATGCAAAATGGT 60.106 40.000 0.00 0.00 0.00 3.55
2865 3124 4.059511 TGCAAAATGGTCTGCAGAATTTG 58.940 39.130 25.75 25.75 43.44 2.32
2866 3125 4.060205 GCAAAATGGTCTGCAGAATTTGT 58.940 39.130 27.89 17.00 38.48 2.83
3111 3370 1.499502 GCTGCGGCTTTTGTCTCTC 59.500 57.895 11.21 0.00 35.22 3.20
3390 3649 2.575279 AGGTGATGTTGAGAGGAAGCAT 59.425 45.455 0.00 0.00 0.00 3.79
4224 4561 7.020652 TGCTATACAGAAGCAGATAGCCCTG 62.021 48.000 9.57 0.00 44.78 4.45
4364 4701 2.759783 CTGATGTCTCAGGGCAACG 58.240 57.895 0.00 0.00 44.40 4.10
4380 4717 1.065401 CAACGGCAGAAGCAACAAGAA 59.935 47.619 0.00 0.00 44.61 2.52
4405 4742 5.573146 CACACAAAGTTCTTGAGGAGAAAC 58.427 41.667 0.00 0.00 45.59 2.78
4524 4861 2.983907 TGAAGGTTGACGTGGTTGTA 57.016 45.000 0.00 0.00 0.00 2.41
4605 4942 3.072915 TCAAGCAGAACCAGATCCTTGAA 59.927 43.478 4.83 0.00 36.66 2.69
4704 5041 2.873649 GCAAGAGTGGCAAGCTAAGAGT 60.874 50.000 0.00 0.00 0.00 3.24
4714 5051 3.594134 CAAGCTAAGAGTGAGGAACTGG 58.406 50.000 0.00 0.00 41.55 4.00
4716 5053 4.048970 AGCTAAGAGTGAGGAACTGGTA 57.951 45.455 0.00 0.00 41.55 3.25
4764 5101 3.699538 TCCTAAAGATCAGCTGCGACTTA 59.300 43.478 9.47 3.65 0.00 2.24
4800 5137 1.571215 CCCGTAACCGCAAAGTGGAC 61.571 60.000 3.24 0.00 36.58 4.02
4869 5206 1.269723 CAAGAGTCACGCCAGTCACTA 59.730 52.381 0.00 0.00 29.60 2.74
4936 5273 5.473504 GCAGGAAAACTTTATGACTCAAGGA 59.526 40.000 0.00 0.00 0.00 3.36
4953 5290 3.562567 AGGAAGAAAGAGAAGTCGTCG 57.437 47.619 0.00 0.00 0.00 5.12
5103 5440 1.502190 GGCAGGCAACGAGCTTTAC 59.498 57.895 0.00 0.00 44.79 2.01
5259 5596 2.299993 TGCGAAGAGATACCAAGCTG 57.700 50.000 0.00 0.00 0.00 4.24
5358 5695 9.654417 GGTCTTGAAAAATCAAATGAAATGTTG 57.346 29.630 0.00 0.00 0.00 3.33
5562 5899 9.730420 GAGAGTTCTGAGATAAGTGAAATAGTC 57.270 37.037 0.00 0.00 0.00 2.59
5574 5911 5.590818 AGTGAAATAGTCCAGAAGGAGGTA 58.409 41.667 0.00 0.00 46.92 3.08
5778 6115 3.001533 GCGTACCTTCGAACAAACTCAAA 59.998 43.478 0.00 0.00 0.00 2.69
5844 6181 5.127519 TCTTTTTGCATCTTCCCCATATGTG 59.872 40.000 1.24 0.00 0.00 3.21
5851 6188 5.565439 GCATCTTCCCCATATGTGTTTATGC 60.565 44.000 1.24 6.26 0.00 3.14
5894 6313 9.042450 TGTAGTTTCTACTTGAAGGATCCATAA 57.958 33.333 15.82 4.88 35.89 1.90
5932 6351 9.859427 AATCTGATATTTGTATTTGTGTTGTGG 57.141 29.630 0.00 0.00 0.00 4.17
5935 6354 8.402798 TGATATTTGTATTTGTGTTGTGGAGT 57.597 30.769 0.00 0.00 0.00 3.85
5937 6356 9.769093 GATATTTGTATTTGTGTTGTGGAGTAC 57.231 33.333 0.00 0.00 0.00 2.73
5939 6358 7.575414 TTTGTATTTGTGTTGTGGAGTACAT 57.425 32.000 0.00 0.00 39.48 2.29
5940 6359 8.678593 TTTGTATTTGTGTTGTGGAGTACATA 57.321 30.769 0.00 0.00 39.48 2.29
5941 6360 7.899178 TGTATTTGTGTTGTGGAGTACATAG 57.101 36.000 0.00 0.00 39.48 2.23
5942 6361 5.880054 ATTTGTGTTGTGGAGTACATAGC 57.120 39.130 0.00 0.00 39.48 2.97
5943 6362 4.344359 TTGTGTTGTGGAGTACATAGCA 57.656 40.909 0.00 0.00 39.48 3.49
5944 6363 4.551702 TGTGTTGTGGAGTACATAGCAT 57.448 40.909 0.00 0.00 39.48 3.79
5945 6364 4.252878 TGTGTTGTGGAGTACATAGCATG 58.747 43.478 0.00 0.00 39.48 4.06
5946 6365 3.063997 GTGTTGTGGAGTACATAGCATGC 59.936 47.826 10.51 10.51 39.48 4.06
5947 6366 3.270027 GTTGTGGAGTACATAGCATGCA 58.730 45.455 21.98 6.36 39.48 3.96
5948 6367 3.843893 TGTGGAGTACATAGCATGCAT 57.156 42.857 21.98 8.63 33.42 3.96
5949 6368 3.732212 TGTGGAGTACATAGCATGCATC 58.268 45.455 21.98 5.66 33.42 3.91
6039 6479 3.501062 CAGCTCTCAAAGATTGCTGTGAA 59.499 43.478 9.04 0.00 44.04 3.18
6151 6591 1.212229 GGACACCGGAGTCGTTCTC 59.788 63.158 23.22 7.59 39.42 2.87
6286 6726 2.680312 TGCTCAAGGACATACAGCTC 57.320 50.000 0.00 0.00 0.00 4.09
6304 6744 2.037527 GACCTCGTCCAGACCCCT 59.962 66.667 0.00 0.00 0.00 4.79
6469 6909 4.968553 TCCGAGAAGGACAAGGGT 57.031 55.556 0.00 0.00 45.98 4.34
6470 6910 2.667348 TCCGAGAAGGACAAGGGTC 58.333 57.895 0.00 0.00 45.98 4.46
6474 6914 0.966920 GAGAAGGACAAGGGTCGACA 59.033 55.000 18.91 0.00 45.28 4.35
6475 6915 0.680061 AGAAGGACAAGGGTCGACAC 59.320 55.000 18.91 15.14 45.28 3.67
7101 7541 2.176055 CGACTGACTGACGTCCCG 59.824 66.667 14.12 6.76 39.47 5.14
7106 7546 0.387367 CTGACTGACGTCCCGAGTTG 60.387 60.000 14.12 3.97 39.47 3.16
7107 7547 1.105167 TGACTGACGTCCCGAGTTGT 61.105 55.000 14.12 0.50 39.47 3.32
7181 7623 6.034683 GCTTTAATCTTCAGAAAATGCAGCAG 59.965 38.462 0.00 0.00 31.04 4.24
7234 7676 7.672983 TGCTGCTCTAGGTAAATAATTATGC 57.327 36.000 0.00 0.00 0.00 3.14
7299 7741 4.954202 AGGATGTAAATGGTAGTCGTCAGA 59.046 41.667 0.00 0.00 0.00 3.27
7338 7905 9.160576 TGTTAATCTTTCGTCGTAATTTTGTTG 57.839 29.630 0.00 0.00 0.00 3.33
7339 7906 9.161684 GTTAATCTTTCGTCGTAATTTTGTTGT 57.838 29.630 0.00 0.00 0.00 3.32
7340 7907 9.719279 TTAATCTTTCGTCGTAATTTTGTTGTT 57.281 25.926 0.00 0.00 0.00 2.83
7341 7908 7.831750 ATCTTTCGTCGTAATTTTGTTGTTC 57.168 32.000 0.00 0.00 0.00 3.18
7342 7909 7.007313 TCTTTCGTCGTAATTTTGTTGTTCT 57.993 32.000 0.00 0.00 0.00 3.01
7373 7940 7.595875 TGTACAATTCTGATGCTGTTTTTCATG 59.404 33.333 0.00 0.00 0.00 3.07
7375 7942 4.859304 TTCTGATGCTGTTTTTCATGCT 57.141 36.364 0.00 0.00 0.00 3.79
7385 7952 2.791383 TTTTCATGCTCGTTGGTTGG 57.209 45.000 0.00 0.00 0.00 3.77
7388 7955 0.396435 TCATGCTCGTTGGTTGGTCT 59.604 50.000 0.00 0.00 0.00 3.85
7389 7956 0.518636 CATGCTCGTTGGTTGGTCTG 59.481 55.000 0.00 0.00 0.00 3.51
7402 7969 3.636764 GGTTGGTCTGGTTCATGTTCTTT 59.363 43.478 0.00 0.00 0.00 2.52
7403 7970 4.261614 GGTTGGTCTGGTTCATGTTCTTTC 60.262 45.833 0.00 0.00 0.00 2.62
7405 7972 2.484264 GGTCTGGTTCATGTTCTTTCGG 59.516 50.000 0.00 0.00 0.00 4.30
7406 7973 3.399330 GTCTGGTTCATGTTCTTTCGGA 58.601 45.455 0.00 0.00 0.00 4.55
7407 7974 4.003648 GTCTGGTTCATGTTCTTTCGGAT 58.996 43.478 0.00 0.00 0.00 4.18
7408 7975 5.175859 GTCTGGTTCATGTTCTTTCGGATA 58.824 41.667 0.00 0.00 0.00 2.59
7409 7976 5.817816 GTCTGGTTCATGTTCTTTCGGATAT 59.182 40.000 0.00 0.00 0.00 1.63
7410 7977 6.984474 GTCTGGTTCATGTTCTTTCGGATATA 59.016 38.462 0.00 0.00 0.00 0.86
7411 7978 7.494625 GTCTGGTTCATGTTCTTTCGGATATAA 59.505 37.037 0.00 0.00 0.00 0.98
7412 7979 7.494625 TCTGGTTCATGTTCTTTCGGATATAAC 59.505 37.037 0.00 0.00 0.00 1.89
7413 7980 7.106890 TGGTTCATGTTCTTTCGGATATAACA 58.893 34.615 2.84 2.84 34.81 2.41
7414 7981 7.773224 TGGTTCATGTTCTTTCGGATATAACAT 59.227 33.333 6.44 6.44 40.44 2.71
7420 7987 8.153479 TGTTCTTTCGGATATAACATGAATGG 57.847 34.615 0.00 0.00 0.00 3.16
7421 7988 7.990314 TGTTCTTTCGGATATAACATGAATGGA 59.010 33.333 0.00 0.00 0.00 3.41
7422 7989 8.836413 GTTCTTTCGGATATAACATGAATGGAA 58.164 33.333 0.00 0.00 0.00 3.53
7423 7990 9.573166 TTCTTTCGGATATAACATGAATGGAAT 57.427 29.630 0.00 0.00 0.00 3.01
7426 7993 9.448438 TTTCGGATATAACATGAATGGAATAGG 57.552 33.333 0.00 0.00 0.00 2.57
7429 7996 9.534565 CGGATATAACATGAATGGAATAGGTAG 57.465 37.037 0.00 0.00 0.00 3.18
7434 8001 9.950496 ATAACATGAATGGAATAGGTAGTGATC 57.050 33.333 0.00 0.00 0.00 2.92
7435 8002 7.379059 ACATGAATGGAATAGGTAGTGATCA 57.621 36.000 0.00 0.00 0.00 2.92
7473 8124 2.652941 TGAAATGAAATCGCAAGCCC 57.347 45.000 0.00 0.00 37.18 5.19
7474 8125 2.170166 TGAAATGAAATCGCAAGCCCT 58.830 42.857 0.00 0.00 37.18 5.19
7476 8127 1.549203 AATGAAATCGCAAGCCCTGT 58.451 45.000 0.00 0.00 37.18 4.00
7485 8136 1.039856 GCAAGCCCTGTTCTTTGGAA 58.960 50.000 0.00 0.00 0.00 3.53
7530 8209 5.659440 ACAAAATGGACTCACAAGTTTGT 57.341 34.783 0.00 0.00 43.36 2.83
7541 8220 2.024414 ACAAGTTTGTGCTTCAGGGTC 58.976 47.619 0.00 0.00 40.49 4.46
7542 8221 2.301346 CAAGTTTGTGCTTCAGGGTCT 58.699 47.619 0.00 0.00 0.00 3.85
7557 8236 1.073964 GGTCTTTTAGAACGACCGCC 58.926 55.000 0.00 0.00 38.00 6.13
7558 8237 1.073964 GTCTTTTAGAACGACCGCCC 58.926 55.000 0.00 0.00 0.00 6.13
7559 8238 0.037046 TCTTTTAGAACGACCGCCCC 60.037 55.000 0.00 0.00 0.00 5.80
7587 8266 1.659794 GGCGCAACATTGTCAACCT 59.340 52.632 10.83 0.00 0.00 3.50
7588 8267 0.387239 GGCGCAACATTGTCAACCTC 60.387 55.000 10.83 0.00 0.00 3.85
7589 8268 0.387239 GCGCAACATTGTCAACCTCC 60.387 55.000 0.30 0.00 0.00 4.30
7590 8269 0.110238 CGCAACATTGTCAACCTCCG 60.110 55.000 0.00 0.00 0.00 4.63
7591 8270 0.240945 GCAACATTGTCAACCTCCGG 59.759 55.000 0.00 0.00 0.00 5.14
7592 8271 0.240945 CAACATTGTCAACCTCCGGC 59.759 55.000 0.00 0.00 0.00 6.13
7593 8272 0.893727 AACATTGTCAACCTCCGGCC 60.894 55.000 0.00 0.00 0.00 6.13
7594 8273 2.046285 CATTGTCAACCTCCGGCCC 61.046 63.158 0.00 0.00 0.00 5.80
7595 8274 3.282374 ATTGTCAACCTCCGGCCCC 62.282 63.158 0.00 0.00 0.00 5.80
7597 8276 3.961414 GTCAACCTCCGGCCCCAA 61.961 66.667 0.00 0.00 0.00 4.12
7598 8277 3.179339 TCAACCTCCGGCCCCAAA 61.179 61.111 0.00 0.00 0.00 3.28
7599 8278 2.037208 CAACCTCCGGCCCCAAAT 59.963 61.111 0.00 0.00 0.00 2.32
7600 8279 2.037208 AACCTCCGGCCCCAAATG 59.963 61.111 0.00 0.00 0.00 2.32
7601 8280 4.759205 ACCTCCGGCCCCAAATGC 62.759 66.667 0.00 0.00 0.00 3.56
7608 8287 4.440829 GCCCCAAATGCCCGAGGA 62.441 66.667 0.00 0.00 0.00 3.71
7609 8288 2.440247 CCCCAAATGCCCGAGGAC 60.440 66.667 0.00 0.00 0.00 3.85
7610 8289 2.824041 CCCAAATGCCCGAGGACG 60.824 66.667 0.00 0.00 39.43 4.79
7611 8290 3.508840 CCAAATGCCCGAGGACGC 61.509 66.667 0.00 0.00 38.29 5.19
7612 8291 2.745884 CAAATGCCCGAGGACGCA 60.746 61.111 0.00 0.00 39.79 5.24
7614 8293 1.819632 AAATGCCCGAGGACGCATC 60.820 57.895 6.37 0.00 44.80 3.91
7615 8294 3.757248 AATGCCCGAGGACGCATCC 62.757 63.158 6.37 0.00 44.80 3.51
7626 8305 2.261361 CGCATCCGTGGACAGTGA 59.739 61.111 0.00 0.00 0.00 3.41
7627 8306 2.094659 CGCATCCGTGGACAGTGAC 61.095 63.158 0.00 0.00 0.00 3.67
7628 8307 1.741770 GCATCCGTGGACAGTGACC 60.742 63.158 4.52 4.52 0.00 4.02
7629 8308 1.446099 CATCCGTGGACAGTGACCG 60.446 63.158 7.14 0.00 0.00 4.79
7630 8309 2.646175 ATCCGTGGACAGTGACCGG 61.646 63.158 0.00 0.00 39.98 5.28
7631 8310 3.299977 CCGTGGACAGTGACCGGA 61.300 66.667 9.46 0.00 41.08 5.14
7632 8311 2.646175 CCGTGGACAGTGACCGGAT 61.646 63.158 9.46 0.00 41.08 4.18
7633 8312 1.446099 CGTGGACAGTGACCGGATG 60.446 63.158 9.46 3.58 0.00 3.51
7634 8313 1.079127 GTGGACAGTGACCGGATGG 60.079 63.158 9.46 0.00 42.84 3.51
7635 8314 2.125106 GGACAGTGACCGGATGGC 60.125 66.667 9.46 2.81 39.70 4.40
7636 8315 2.662596 GACAGTGACCGGATGGCA 59.337 61.111 9.46 0.00 39.70 4.92
7637 8316 1.741770 GACAGTGACCGGATGGCAC 60.742 63.158 9.46 10.89 40.45 5.01
7653 8332 4.817318 TGGCACATTAAGATTTTTCCCC 57.183 40.909 0.00 0.00 0.00 4.81
7654 8333 4.424842 TGGCACATTAAGATTTTTCCCCT 58.575 39.130 0.00 0.00 0.00 4.79
7655 8334 5.584913 TGGCACATTAAGATTTTTCCCCTA 58.415 37.500 0.00 0.00 0.00 3.53
7656 8335 5.656416 TGGCACATTAAGATTTTTCCCCTAG 59.344 40.000 0.00 0.00 0.00 3.02
7657 8336 5.069119 GGCACATTAAGATTTTTCCCCTAGG 59.931 44.000 0.06 0.06 0.00 3.02
7658 8337 5.069119 GCACATTAAGATTTTTCCCCTAGGG 59.931 44.000 22.25 22.25 46.11 3.53
7659 8338 6.194967 CACATTAAGATTTTTCCCCTAGGGT 58.805 40.000 26.66 6.56 44.74 4.34
7660 8339 6.667848 CACATTAAGATTTTTCCCCTAGGGTT 59.332 38.462 26.66 13.54 44.74 4.11
7661 8340 7.180229 CACATTAAGATTTTTCCCCTAGGGTTT 59.820 37.037 26.66 9.50 44.74 3.27
7662 8341 7.399191 ACATTAAGATTTTTCCCCTAGGGTTTC 59.601 37.037 26.66 12.72 44.74 2.78
7663 8342 3.964411 AGATTTTTCCCCTAGGGTTTCG 58.036 45.455 26.66 11.24 44.74 3.46
7664 8343 1.913778 TTTTTCCCCTAGGGTTTCGC 58.086 50.000 26.66 0.00 44.74 4.70
7665 8344 0.038599 TTTTCCCCTAGGGTTTCGCC 59.961 55.000 26.66 0.00 44.74 5.54
7666 8345 0.843343 TTTCCCCTAGGGTTTCGCCT 60.843 55.000 26.66 0.00 44.74 5.52
7667 8346 0.043032 TTCCCCTAGGGTTTCGCCTA 59.957 55.000 26.66 0.00 44.74 3.93
7668 8347 0.398098 TCCCCTAGGGTTTCGCCTAG 60.398 60.000 26.66 7.80 44.74 3.02
7671 8350 2.912020 CTAGGGTTTCGCCTAGGGT 58.088 57.895 11.72 0.00 37.43 4.34
7672 8351 1.201424 CTAGGGTTTCGCCTAGGGTT 58.799 55.000 11.72 0.00 37.43 4.11
7673 8352 1.138464 CTAGGGTTTCGCCTAGGGTTC 59.862 57.143 11.72 0.00 37.43 3.62
7674 8353 1.077930 GGGTTTCGCCTAGGGTTCC 60.078 63.158 11.72 5.52 37.43 3.62
7675 8354 1.681076 GGTTTCGCCTAGGGTTCCA 59.319 57.895 11.72 0.00 0.00 3.53
7676 8355 0.675837 GGTTTCGCCTAGGGTTCCAC 60.676 60.000 11.72 0.00 0.00 4.02
7677 8356 0.675837 GTTTCGCCTAGGGTTCCACC 60.676 60.000 11.72 0.00 37.60 4.61
7678 8357 0.838987 TTTCGCCTAGGGTTCCACCT 60.839 55.000 11.72 0.00 44.75 4.00
7679 8358 0.838987 TTCGCCTAGGGTTCCACCTT 60.839 55.000 11.72 0.00 42.09 3.50
7680 8359 0.838987 TCGCCTAGGGTTCCACCTTT 60.839 55.000 11.72 0.00 42.09 3.11
7681 8360 0.037734 CGCCTAGGGTTCCACCTTTT 59.962 55.000 11.72 0.00 42.09 2.27
7682 8361 1.835494 GCCTAGGGTTCCACCTTTTC 58.165 55.000 11.72 0.00 42.09 2.29
7683 8362 1.616187 GCCTAGGGTTCCACCTTTTCC 60.616 57.143 11.72 0.00 42.09 3.13
7684 8363 1.993301 CCTAGGGTTCCACCTTTTCCT 59.007 52.381 0.00 0.00 42.09 3.36
7685 8364 2.026169 CCTAGGGTTCCACCTTTTCCTC 60.026 54.545 0.00 0.00 42.09 3.71
7686 8365 0.778083 AGGGTTCCACCTTTTCCTCC 59.222 55.000 0.00 0.00 37.69 4.30
7687 8366 0.608308 GGGTTCCACCTTTTCCTCCG 60.608 60.000 0.00 0.00 38.64 4.63
7688 8367 0.608308 GGTTCCACCTTTTCCTCCGG 60.608 60.000 0.00 0.00 34.73 5.14
7689 8368 1.074248 TTCCACCTTTTCCTCCGGC 59.926 57.895 0.00 0.00 0.00 6.13
7690 8369 2.741486 TTCCACCTTTTCCTCCGGCG 62.741 60.000 0.00 0.00 0.00 6.46
7691 8370 2.345991 CACCTTTTCCTCCGGCGA 59.654 61.111 9.30 0.00 0.00 5.54
7692 8371 1.078426 CACCTTTTCCTCCGGCGAT 60.078 57.895 9.30 0.00 0.00 4.58
7693 8372 1.090052 CACCTTTTCCTCCGGCGATC 61.090 60.000 9.30 0.00 0.00 3.69
7694 8373 1.265454 ACCTTTTCCTCCGGCGATCT 61.265 55.000 9.30 0.00 0.00 2.75
7695 8374 0.750850 CCTTTTCCTCCGGCGATCTA 59.249 55.000 9.30 0.00 0.00 1.98
7696 8375 1.269831 CCTTTTCCTCCGGCGATCTAG 60.270 57.143 9.30 0.00 0.00 2.43
7697 8376 0.104304 TTTTCCTCCGGCGATCTAGC 59.896 55.000 9.30 0.00 0.00 3.42
7705 8384 2.646143 GCGATCTAGCCGGAGTCC 59.354 66.667 5.05 0.00 0.00 3.85
7706 8385 2.194212 GCGATCTAGCCGGAGTCCA 61.194 63.158 5.05 0.00 0.00 4.02
7707 8386 1.655329 CGATCTAGCCGGAGTCCAC 59.345 63.158 5.05 0.00 0.00 4.02
7708 8387 1.655329 GATCTAGCCGGAGTCCACG 59.345 63.158 5.05 0.00 0.00 4.94
7709 8388 1.076923 ATCTAGCCGGAGTCCACGT 60.077 57.895 5.05 0.00 0.00 4.49
7710 8389 0.182061 ATCTAGCCGGAGTCCACGTA 59.818 55.000 5.05 0.00 0.00 3.57
7711 8390 0.035152 TCTAGCCGGAGTCCACGTAA 60.035 55.000 5.05 0.00 0.00 3.18
7712 8391 0.813184 CTAGCCGGAGTCCACGTAAA 59.187 55.000 5.05 0.00 0.00 2.01
7713 8392 1.203052 CTAGCCGGAGTCCACGTAAAA 59.797 52.381 5.05 0.00 0.00 1.52
7714 8393 0.611714 AGCCGGAGTCCACGTAAAAT 59.388 50.000 5.05 0.00 0.00 1.82
7715 8394 1.004595 GCCGGAGTCCACGTAAAATC 58.995 55.000 5.05 0.00 0.00 2.17
7716 8395 1.405121 GCCGGAGTCCACGTAAAATCT 60.405 52.381 5.05 0.00 0.00 2.40
7717 8396 2.537401 CCGGAGTCCACGTAAAATCTC 58.463 52.381 10.49 0.00 0.00 2.75
7718 8397 2.165845 CCGGAGTCCACGTAAAATCTCT 59.834 50.000 10.49 0.00 0.00 3.10
7719 8398 3.436496 CGGAGTCCACGTAAAATCTCTC 58.564 50.000 10.49 0.00 0.00 3.20
7720 8399 3.734293 CGGAGTCCACGTAAAATCTCTCC 60.734 52.174 10.49 0.00 37.45 3.71
7721 8400 3.436496 GAGTCCACGTAAAATCTCTCCG 58.564 50.000 0.00 0.00 0.00 4.63
7722 8401 2.165845 AGTCCACGTAAAATCTCTCCGG 59.834 50.000 0.00 0.00 0.00 5.14
7723 8402 1.134907 TCCACGTAAAATCTCTCCGGC 60.135 52.381 0.00 0.00 0.00 6.13
7724 8403 1.134788 CCACGTAAAATCTCTCCGGCT 60.135 52.381 0.00 0.00 0.00 5.52
7725 8404 2.100252 CCACGTAAAATCTCTCCGGCTA 59.900 50.000 0.00 0.00 0.00 3.93
7726 8405 3.114065 CACGTAAAATCTCTCCGGCTAC 58.886 50.000 0.00 0.00 0.00 3.58
7727 8406 2.100418 ACGTAAAATCTCTCCGGCTACC 59.900 50.000 0.00 0.00 0.00 3.18
7739 8418 3.688553 GGCTACCGATCTCTTTGGG 57.311 57.895 0.00 0.00 32.37 4.12
7740 8419 0.831307 GGCTACCGATCTCTTTGGGT 59.169 55.000 0.00 0.00 36.57 4.51
7741 8420 1.202545 GGCTACCGATCTCTTTGGGTC 60.203 57.143 0.00 0.00 34.02 4.46
7742 8421 1.536284 GCTACCGATCTCTTTGGGTCG 60.536 57.143 0.00 0.00 34.02 4.79
7743 8422 1.749634 CTACCGATCTCTTTGGGTCGT 59.250 52.381 0.00 0.00 34.02 4.34
7744 8423 0.531200 ACCGATCTCTTTGGGTCGTC 59.469 55.000 0.00 0.00 32.37 4.20
7745 8424 0.525668 CCGATCTCTTTGGGTCGTCG 60.526 60.000 0.00 0.00 32.55 5.12
7746 8425 0.525668 CGATCTCTTTGGGTCGTCGG 60.526 60.000 0.00 0.00 0.00 4.79
7747 8426 0.531200 GATCTCTTTGGGTCGTCGGT 59.469 55.000 0.00 0.00 0.00 4.69
7748 8427 0.246635 ATCTCTTTGGGTCGTCGGTG 59.753 55.000 0.00 0.00 0.00 4.94
7749 8428 0.824595 TCTCTTTGGGTCGTCGGTGA 60.825 55.000 0.00 0.00 0.00 4.02
7750 8429 0.388649 CTCTTTGGGTCGTCGGTGAG 60.389 60.000 0.00 0.00 0.00 3.51
7751 8430 0.824595 TCTTTGGGTCGTCGGTGAGA 60.825 55.000 0.00 0.00 0.00 3.27
7752 8431 0.246635 CTTTGGGTCGTCGGTGAGAT 59.753 55.000 0.00 0.00 0.00 2.75
7753 8432 0.245539 TTTGGGTCGTCGGTGAGATC 59.754 55.000 0.00 0.00 0.00 2.75
7754 8433 0.611062 TTGGGTCGTCGGTGAGATCT 60.611 55.000 0.00 0.00 0.00 2.75
7755 8434 0.253894 TGGGTCGTCGGTGAGATCTA 59.746 55.000 0.00 0.00 0.00 1.98
7756 8435 1.133884 TGGGTCGTCGGTGAGATCTAT 60.134 52.381 0.00 0.00 0.00 1.98
7757 8436 1.536331 GGGTCGTCGGTGAGATCTATC 59.464 57.143 0.00 0.00 0.00 2.08
7758 8437 2.219458 GGTCGTCGGTGAGATCTATCA 58.781 52.381 0.00 0.00 0.00 2.15
7759 8438 2.814919 GGTCGTCGGTGAGATCTATCAT 59.185 50.000 0.00 0.00 0.00 2.45
7760 8439 3.120130 GGTCGTCGGTGAGATCTATCATC 60.120 52.174 0.00 0.00 0.00 2.92
7761 8440 3.749088 GTCGTCGGTGAGATCTATCATCT 59.251 47.826 0.00 0.00 0.00 2.90
7762 8441 3.997681 TCGTCGGTGAGATCTATCATCTC 59.002 47.826 0.00 4.88 43.55 2.75
7763 8442 3.126171 CGTCGGTGAGATCTATCATCTCC 59.874 52.174 8.75 0.00 42.83 3.71
7764 8443 3.442273 GTCGGTGAGATCTATCATCTCCC 59.558 52.174 8.75 8.42 42.83 4.30
7765 8444 2.421775 CGGTGAGATCTATCATCTCCCG 59.578 54.545 18.67 18.67 44.33 5.14
7766 8445 2.165437 GGTGAGATCTATCATCTCCCGC 59.835 54.545 8.75 0.98 42.83 6.13
7767 8446 2.165437 GTGAGATCTATCATCTCCCGCC 59.835 54.545 8.75 0.00 42.83 6.13
7768 8447 1.403679 GAGATCTATCATCTCCCGCCG 59.596 57.143 0.00 0.00 38.81 6.46
7769 8448 1.178276 GATCTATCATCTCCCGCCGT 58.822 55.000 0.00 0.00 0.00 5.68
7770 8449 0.891373 ATCTATCATCTCCCGCCGTG 59.109 55.000 0.00 0.00 0.00 4.94
7771 8450 0.467474 TCTATCATCTCCCGCCGTGT 60.467 55.000 0.00 0.00 0.00 4.49
7772 8451 0.319040 CTATCATCTCCCGCCGTGTG 60.319 60.000 0.00 0.00 0.00 3.82
7773 8452 1.040893 TATCATCTCCCGCCGTGTGT 61.041 55.000 0.00 0.00 0.00 3.72
8029 8708 4.521062 GACGGAGGCAGCAGCGAT 62.521 66.667 0.00 0.00 43.41 4.58
8030 8709 4.827087 ACGGAGGCAGCAGCGATG 62.827 66.667 0.00 0.00 43.41 3.84
8032 8711 4.479993 GGAGGCAGCAGCGATGGT 62.480 66.667 0.00 0.00 43.41 3.55
8033 8712 2.501128 GAGGCAGCAGCGATGGTA 59.499 61.111 4.50 0.00 43.41 3.25
8034 8713 1.593750 GAGGCAGCAGCGATGGTAG 60.594 63.158 4.50 1.26 43.41 3.18
8035 8714 3.275338 GGCAGCAGCGATGGTAGC 61.275 66.667 4.50 11.65 43.41 3.58
8036 8715 3.634072 GCAGCAGCGATGGTAGCG 61.634 66.667 4.50 0.00 40.04 4.26
8037 8716 2.963854 CAGCAGCGATGGTAGCGG 60.964 66.667 4.50 0.00 40.04 5.52
8056 8735 4.222847 GGAGCGGTCGGGTGGATC 62.223 72.222 8.77 0.00 0.00 3.36
8057 8736 3.458163 GAGCGGTCGGGTGGATCA 61.458 66.667 0.00 0.00 0.00 2.92
8058 8737 3.432051 GAGCGGTCGGGTGGATCAG 62.432 68.421 0.00 0.00 0.00 2.90
8059 8738 4.530857 GCGGTCGGGTGGATCAGG 62.531 72.222 0.00 0.00 0.00 3.86
8060 8739 3.849951 CGGTCGGGTGGATCAGGG 61.850 72.222 0.00 0.00 0.00 4.45
8061 8740 4.176752 GGTCGGGTGGATCAGGGC 62.177 72.222 0.00 0.00 0.00 5.19
8062 8741 3.399181 GTCGGGTGGATCAGGGCA 61.399 66.667 0.00 0.00 0.00 5.36
8063 8742 3.083349 TCGGGTGGATCAGGGCAG 61.083 66.667 0.00 0.00 0.00 4.85
8064 8743 4.181010 CGGGTGGATCAGGGCAGG 62.181 72.222 0.00 0.00 0.00 4.85
8065 8744 4.512914 GGGTGGATCAGGGCAGGC 62.513 72.222 0.00 0.00 0.00 4.85
8066 8745 3.731728 GGTGGATCAGGGCAGGCA 61.732 66.667 0.00 0.00 0.00 4.75
8067 8746 2.356278 GTGGATCAGGGCAGGCAA 59.644 61.111 0.00 0.00 0.00 4.52
8068 8747 1.751927 GTGGATCAGGGCAGGCAAG 60.752 63.158 0.00 0.00 0.00 4.01
8069 8748 1.924939 TGGATCAGGGCAGGCAAGA 60.925 57.895 0.00 0.00 0.00 3.02
8070 8749 1.153005 GGATCAGGGCAGGCAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
8071 8750 1.153005 GATCAGGGCAGGCAAGAGG 60.153 63.158 0.00 0.00 0.00 3.69
8072 8751 2.621517 GATCAGGGCAGGCAAGAGGG 62.622 65.000 0.00 0.00 0.00 4.30
8073 8752 4.437587 CAGGGCAGGCAAGAGGGG 62.438 72.222 0.00 0.00 0.00 4.79
8076 8755 3.984732 GGCAGGCAAGAGGGGGTT 61.985 66.667 0.00 0.00 0.00 4.11
8077 8756 2.118294 GCAGGCAAGAGGGGGTTT 59.882 61.111 0.00 0.00 0.00 3.27
8078 8757 1.382629 GCAGGCAAGAGGGGGTTTA 59.617 57.895 0.00 0.00 0.00 2.01
8079 8758 0.681243 GCAGGCAAGAGGGGGTTTAG 60.681 60.000 0.00 0.00 0.00 1.85
8080 8759 0.991920 CAGGCAAGAGGGGGTTTAGA 59.008 55.000 0.00 0.00 0.00 2.10
8081 8760 1.065126 CAGGCAAGAGGGGGTTTAGAG 60.065 57.143 0.00 0.00 0.00 2.43
8082 8761 0.256177 GGCAAGAGGGGGTTTAGAGG 59.744 60.000 0.00 0.00 0.00 3.69
8083 8762 1.286248 GCAAGAGGGGGTTTAGAGGA 58.714 55.000 0.00 0.00 0.00 3.71
8084 8763 1.210722 GCAAGAGGGGGTTTAGAGGAG 59.789 57.143 0.00 0.00 0.00 3.69
8085 8764 1.840635 CAAGAGGGGGTTTAGAGGAGG 59.159 57.143 0.00 0.00 0.00 4.30
8086 8765 1.405243 AGAGGGGGTTTAGAGGAGGA 58.595 55.000 0.00 0.00 0.00 3.71
8087 8766 1.948243 AGAGGGGGTTTAGAGGAGGAT 59.052 52.381 0.00 0.00 0.00 3.24
8088 8767 3.148331 AGAGGGGGTTTAGAGGAGGATA 58.852 50.000 0.00 0.00 0.00 2.59
8089 8768 3.116668 AGAGGGGGTTTAGAGGAGGATAC 60.117 52.174 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.670854 GAGGGCGGTGACAAGAGAAC 60.671 60.000 0.00 0.00 0.00 3.01
80 85 3.272020 TCCTTCAAAATGGGGGCTAATCT 59.728 43.478 0.00 0.00 0.00 2.40
108 114 4.992688 TCACACACCAAAATCACAAGAAC 58.007 39.130 0.00 0.00 0.00 3.01
243 250 3.674997 TGGATTTACCAGAACACTGCTC 58.325 45.455 0.00 0.00 44.64 4.26
386 393 1.267806 CAGAAACGTGCCAAGATTGCT 59.732 47.619 0.00 0.00 0.00 3.91
449 456 0.254178 AAACAGAGGGCATCAGCGAT 59.746 50.000 0.58 0.00 43.41 4.58
630 637 4.621034 GGAAGCACATAACGGTCAAAAATG 59.379 41.667 0.00 0.00 0.00 2.32
631 638 4.614993 CGGAAGCACATAACGGTCAAAAAT 60.615 41.667 0.00 0.00 0.00 1.82
651 658 1.852157 AATCAAGGAAGGCCAGCGGA 61.852 55.000 5.01 0.00 36.29 5.54
653 660 0.171903 CAAATCAAGGAAGGCCAGCG 59.828 55.000 5.01 0.00 36.29 5.18
799 807 1.459592 CGAAACCGAAACTAGGCACAG 59.540 52.381 0.00 0.00 0.00 3.66
833 843 8.243961 AGTTAGTCACTGTCTTATATGCAGAT 57.756 34.615 0.00 0.00 32.83 2.90
866 876 1.893808 ACCTGCGGCACAACAGAAG 60.894 57.895 0.00 0.00 34.53 2.85
885 895 2.640316 AGATCTATTTCCGGCCAACC 57.360 50.000 2.24 0.00 0.00 3.77
914 924 5.621104 CGGAATTCAAATCAACCGGAAATCA 60.621 40.000 9.46 0.00 37.28 2.57
921 931 2.627863 TGCGGAATTCAAATCAACCG 57.372 45.000 7.93 0.00 42.63 4.44
925 935 4.582701 ACTTGTTGCGGAATTCAAATCA 57.417 36.364 7.93 0.00 0.00 2.57
953 963 0.908198 ACAGCACTCCTTGGATCCTC 59.092 55.000 14.23 0.00 0.00 3.71
967 977 1.224069 GAGAGCGCAACAGAACAGCA 61.224 55.000 11.47 0.00 0.00 4.41
991 1001 1.077716 TCCTCGACATCAGAGCCGA 60.078 57.895 0.00 0.00 34.56 5.54
1114 1124 2.680251 TGACCGTAGTGCCCCAATATA 58.320 47.619 0.00 0.00 0.00 0.86
1117 1127 1.502690 TATGACCGTAGTGCCCCAAT 58.497 50.000 0.00 0.00 0.00 3.16
1123 1133 5.769367 TCAACAGATATATGACCGTAGTGC 58.231 41.667 3.93 0.00 0.00 4.40
1129 1139 7.597386 TGAAGATCTCAACAGATATATGACCG 58.403 38.462 3.93 0.00 39.71 4.79
1259 1311 2.014128 CCTATACCAACCAACGCAAGG 58.986 52.381 0.00 0.00 46.39 3.61
1336 1388 5.051816 ACCATTGAACTTGAAAATGCACAG 58.948 37.500 0.00 0.00 31.34 3.66
1344 1396 4.586841 CCACCCTTACCATTGAACTTGAAA 59.413 41.667 0.00 0.00 0.00 2.69
1356 1408 1.145571 AAAGCAGTCCACCCTTACCA 58.854 50.000 0.00 0.00 0.00 3.25
1447 1507 5.006746 ACTTTGATGACTTTCAACGAGACAC 59.993 40.000 0.00 0.00 35.42 3.67
1591 1723 5.590259 CCTCACAAGAATTTACCATGTAGGG 59.410 44.000 0.00 0.00 43.89 3.53
1592 1724 6.414732 TCCTCACAAGAATTTACCATGTAGG 58.585 40.000 0.00 0.00 45.67 3.18
1593 1725 7.921786 TTCCTCACAAGAATTTACCATGTAG 57.078 36.000 0.00 0.00 0.00 2.74
1594 1726 8.106462 TGATTCCTCACAAGAATTTACCATGTA 58.894 33.333 0.00 0.00 34.12 2.29
1595 1727 6.947733 TGATTCCTCACAAGAATTTACCATGT 59.052 34.615 0.00 0.00 34.12 3.21
1596 1728 7.395190 TGATTCCTCACAAGAATTTACCATG 57.605 36.000 0.00 0.00 34.12 3.66
1631 1763 9.011307 CTGATCCAGATTGTTGACAGGTCAATC 62.011 44.444 16.97 11.11 41.51 2.67
1760 2014 7.632028 GCGGTGCCCACATTATATTATACTCTA 60.632 40.741 0.40 0.00 0.00 2.43
1761 2015 6.640518 CGGTGCCCACATTATATTATACTCT 58.359 40.000 0.40 0.00 0.00 3.24
1762 2016 5.293569 GCGGTGCCCACATTATATTATACTC 59.706 44.000 0.40 0.00 0.00 2.59
1763 2017 5.183228 GCGGTGCCCACATTATATTATACT 58.817 41.667 0.40 0.00 0.00 2.12
1764 2018 4.938832 TGCGGTGCCCACATTATATTATAC 59.061 41.667 0.40 0.00 0.00 1.47
1970 2224 6.648879 TTTAATCTGTTCTCCCCAAACAAG 57.351 37.500 0.00 0.00 36.27 3.16
2415 2669 1.000283 CGGCTGTCAGAGTCAGTTTCT 60.000 52.381 3.32 0.00 35.60 2.52
2748 3007 1.610522 GATTGCTGGCACTGTGAAACT 59.389 47.619 12.86 0.00 38.04 2.66
2757 3016 1.945394 CTATCACTGGATTGCTGGCAC 59.055 52.381 0.00 0.00 34.89 5.01
2804 3063 5.285401 TCTTGAATTCCTCCTGGGTATGTA 58.715 41.667 2.27 0.00 36.25 2.29
2865 3124 0.533755 ACTGTTCCTCTGCAGTGCAC 60.534 55.000 15.37 9.40 43.45 4.57
2866 3125 1.832219 ACTGTTCCTCTGCAGTGCA 59.168 52.632 18.58 18.58 43.45 4.57
3111 3370 2.108700 CTTGTTTCACCGTGCTTTTCG 58.891 47.619 0.00 0.00 0.00 3.46
3390 3649 7.231317 ACTTGTATTTGCTCCTTGATTGAGAAA 59.769 33.333 0.00 0.00 31.26 2.52
3787 4046 7.432148 TCCTATGGTTTTCAAGCTCAGTATA 57.568 36.000 0.00 0.00 0.00 1.47
4106 4443 2.333926 TGACTGCTTCATTACGAACCG 58.666 47.619 0.00 0.00 0.00 4.44
4224 4561 1.137086 TGCCGTCCATCTTCTAGAAGC 59.863 52.381 25.04 13.60 38.28 3.86
4364 4701 0.670162 TGCTTCTTGTTGCTTCTGCC 59.330 50.000 0.00 0.00 38.71 4.85
4380 4717 3.118261 TCTCCTCAAGAACTTTGTGTGCT 60.118 43.478 0.00 0.00 35.65 4.40
4405 4742 2.358582 TGTTCTGTGTCAAACATGCCAG 59.641 45.455 0.00 0.00 38.39 4.85
4524 4861 3.562343 ATCTCATGCAAGATGAGCTGT 57.438 42.857 10.38 0.00 43.79 4.40
4605 4942 1.021968 GGGTGACAACAAGCGACTTT 58.978 50.000 0.00 0.00 0.00 2.66
4698 5035 5.010719 CAGTTGTACCAGTTCCTCACTCTTA 59.989 44.000 0.00 0.00 30.92 2.10
4704 5041 1.765904 TGCAGTTGTACCAGTTCCTCA 59.234 47.619 0.00 0.00 0.00 3.86
4714 5051 2.224314 GCCTTTCACTCTGCAGTTGTAC 59.776 50.000 14.67 0.00 0.00 2.90
4716 5053 1.312815 GCCTTTCACTCTGCAGTTGT 58.687 50.000 14.67 11.24 0.00 3.32
4743 5080 2.593346 AGTCGCAGCTGATCTTTAGG 57.407 50.000 20.43 0.00 0.00 2.69
4764 5101 4.681978 GCCTCCACGTCCTTGCGT 62.682 66.667 0.00 0.00 46.88 5.24
4800 5137 3.993081 ACTTTGACTCAGCTTTCATCTCG 59.007 43.478 0.00 0.00 0.00 4.04
4869 5206 8.646004 TCTATCAGCTTAATAATCTCAGCTTGT 58.354 33.333 0.00 0.00 40.75 3.16
4936 5273 3.568853 TCTTCCGACGACTTCTCTTTCTT 59.431 43.478 0.00 0.00 0.00 2.52
5103 5440 3.760151 TGTTCATCAGCCTGATTTCTTGG 59.240 43.478 3.97 0.00 34.28 3.61
5215 5552 0.040067 CGCCTTCTTGCAGAACCAAC 60.040 55.000 0.00 0.00 29.89 3.77
5238 5575 3.384789 ACAGCTTGGTATCTCTTCGCATA 59.615 43.478 0.00 0.00 0.00 3.14
5259 5596 2.163211 GCTCTTCCTGCCAGATTTCAAC 59.837 50.000 0.00 0.00 0.00 3.18
5358 5695 3.851051 CTTGTGAAGCTCCTCCCTC 57.149 57.895 0.00 0.00 0.00 4.30
5562 5899 4.471386 TCCTCTTTCAATACCTCCTTCTGG 59.529 45.833 0.00 0.00 0.00 3.86
5574 5911 5.395103 CCTTCGACTGATCTCCTCTTTCAAT 60.395 44.000 0.00 0.00 0.00 2.57
5607 5944 0.764271 TGTCCTTCAGTGCATCCACA 59.236 50.000 0.00 0.00 44.53 4.17
5806 6143 6.656632 TGCAAAAAGAACATGGTATGGTTA 57.343 33.333 0.00 0.00 33.60 2.85
5807 6144 5.543507 TGCAAAAAGAACATGGTATGGTT 57.456 34.783 0.00 0.00 33.60 3.67
5808 6145 5.481473 AGATGCAAAAAGAACATGGTATGGT 59.519 36.000 0.00 0.00 33.60 3.55
5811 6148 6.351286 GGGAAGATGCAAAAAGAACATGGTAT 60.351 38.462 0.00 0.00 0.00 2.73
5866 6285 8.603898 TGGATCCTTCAAGTAGAAACTACATA 57.396 34.615 14.23 0.00 35.40 2.29
5918 6337 6.370442 TGCTATGTACTCCACAACACAAATAC 59.630 38.462 0.00 0.00 41.55 1.89
5931 6350 6.382869 AAAAAGATGCATGCTATGTACTCC 57.617 37.500 20.33 0.00 0.00 3.85
5932 6351 9.390795 CAATAAAAAGATGCATGCTATGTACTC 57.609 33.333 20.33 4.42 0.00 2.59
5939 6358 8.911965 TGGTAATCAATAAAAAGATGCATGCTA 58.088 29.630 20.33 5.73 0.00 3.49
5940 6359 7.784037 TGGTAATCAATAAAAAGATGCATGCT 58.216 30.769 20.33 4.11 0.00 3.79
5941 6360 8.597662 ATGGTAATCAATAAAAAGATGCATGC 57.402 30.769 11.82 11.82 0.00 4.06
6005 6445 2.838736 TGAGAGCTGAGGTGACAAAAC 58.161 47.619 0.00 0.00 0.00 2.43
6039 6479 2.293399 GAGTTTTGGTCATCGCTTGGTT 59.707 45.455 0.00 0.00 0.00 3.67
6286 6726 2.547640 TAGGGGTCTGGACGAGGTCG 62.548 65.000 0.00 0.00 46.33 4.79
6391 6831 2.559840 CTGCCGCTGCTTGTTCTG 59.440 61.111 0.70 0.00 38.71 3.02
6469 6909 1.674651 CTCGGAGGTGGAGTGTCGA 60.675 63.158 0.00 0.00 0.00 4.20
6470 6910 2.878429 CTCGGAGGTGGAGTGTCG 59.122 66.667 0.00 0.00 0.00 4.35
6474 6914 1.000993 ATCAGCTCGGAGGTGGAGT 59.999 57.895 30.40 17.45 43.47 3.85
6475 6915 1.440893 CATCAGCTCGGAGGTGGAG 59.559 63.158 30.40 21.12 43.47 3.86
6973 7413 3.618780 CTCCACCAGCTGCACCCTC 62.619 68.421 8.66 0.00 0.00 4.30
7101 7541 3.191371 CACTGGGCTGGATAAAACAACTC 59.809 47.826 0.00 0.00 0.00 3.01
7181 7623 7.704789 AAAATGATGAAACAAGAGCAAAGTC 57.295 32.000 0.00 0.00 0.00 3.01
7234 7676 6.853720 TGAAGAAACTAGGATAGACAGTTCG 58.146 40.000 0.00 0.00 42.77 3.95
7264 7706 7.924541 ACCATTTACATCCTTACTTGAGGTAA 58.075 34.615 0.00 0.00 37.25 2.85
7265 7707 7.504926 ACCATTTACATCCTTACTTGAGGTA 57.495 36.000 0.00 0.00 38.04 3.08
7266 7708 6.388619 ACCATTTACATCCTTACTTGAGGT 57.611 37.500 0.00 0.00 38.04 3.85
7338 7905 6.538021 AGCATCAGAATTGTACATGAGAGAAC 59.462 38.462 0.00 0.00 0.00 3.01
7339 7906 6.537660 CAGCATCAGAATTGTACATGAGAGAA 59.462 38.462 0.00 0.00 0.00 2.87
7340 7907 6.047231 CAGCATCAGAATTGTACATGAGAGA 58.953 40.000 0.00 0.00 0.00 3.10
7341 7908 5.816258 ACAGCATCAGAATTGTACATGAGAG 59.184 40.000 0.00 0.00 0.00 3.20
7342 7909 5.737860 ACAGCATCAGAATTGTACATGAGA 58.262 37.500 0.00 0.00 0.00 3.27
7373 7940 0.818040 AACCAGACCAACCAACGAGC 60.818 55.000 0.00 0.00 0.00 5.03
7375 7942 0.542333 TGAACCAGACCAACCAACGA 59.458 50.000 0.00 0.00 0.00 3.85
7385 7952 3.399330 TCCGAAAGAACATGAACCAGAC 58.601 45.455 0.00 0.00 0.00 3.51
7388 7955 7.106890 TGTTATATCCGAAAGAACATGAACCA 58.893 34.615 0.00 0.00 0.00 3.67
7389 7956 7.548196 TGTTATATCCGAAAGAACATGAACC 57.452 36.000 0.00 0.00 0.00 3.62
7402 7969 8.146053 ACCTATTCCATTCATGTTATATCCGA 57.854 34.615 0.00 0.00 0.00 4.55
7403 7970 9.534565 CTACCTATTCCATTCATGTTATATCCG 57.465 37.037 0.00 0.00 0.00 4.18
7408 7975 9.950496 GATCACTACCTATTCCATTCATGTTAT 57.050 33.333 0.00 0.00 0.00 1.89
7409 7976 8.933653 TGATCACTACCTATTCCATTCATGTTA 58.066 33.333 0.00 0.00 0.00 2.41
7410 7977 7.716998 GTGATCACTACCTATTCCATTCATGTT 59.283 37.037 18.83 0.00 0.00 2.71
7411 7978 7.071698 AGTGATCACTACCTATTCCATTCATGT 59.928 37.037 26.87 0.00 40.43 3.21
7412 7979 7.387122 CAGTGATCACTACCTATTCCATTCATG 59.613 40.741 27.44 6.71 40.20 3.07
7413 7980 7.071698 ACAGTGATCACTACCTATTCCATTCAT 59.928 37.037 27.44 0.00 40.20 2.57
7414 7981 6.384015 ACAGTGATCACTACCTATTCCATTCA 59.616 38.462 27.44 0.00 40.20 2.57
7415 7982 6.821388 ACAGTGATCACTACCTATTCCATTC 58.179 40.000 27.44 0.00 40.20 2.67
7416 7983 6.814954 ACAGTGATCACTACCTATTCCATT 57.185 37.500 27.44 0.00 40.20 3.16
7417 7984 7.069986 ACTACAGTGATCACTACCTATTCCAT 58.930 38.462 27.44 0.00 40.20 3.41
7418 7985 6.432581 ACTACAGTGATCACTACCTATTCCA 58.567 40.000 27.44 5.01 40.20 3.53
7419 7986 6.963083 ACTACAGTGATCACTACCTATTCC 57.037 41.667 27.44 0.00 40.20 3.01
7420 7987 7.997482 TCAACTACAGTGATCACTACCTATTC 58.003 38.462 27.44 0.00 40.20 1.75
7421 7988 7.956328 TCAACTACAGTGATCACTACCTATT 57.044 36.000 27.44 15.06 40.20 1.73
7422 7989 7.956328 TTCAACTACAGTGATCACTACCTAT 57.044 36.000 27.44 11.75 40.20 2.57
7423 7990 7.770366 TTTCAACTACAGTGATCACTACCTA 57.230 36.000 27.44 15.38 40.20 3.08
7425 7992 7.907214 ATTTTCAACTACAGTGATCACTACC 57.093 36.000 27.44 0.00 40.20 3.18
7456 8107 1.895131 ACAGGGCTTGCGATTTCATTT 59.105 42.857 0.00 0.00 0.00 2.32
7469 8120 2.037641 GCAAATTCCAAAGAACAGGGCT 59.962 45.455 0.00 0.00 33.97 5.19
7473 8124 4.885413 TCATGGCAAATTCCAAAGAACAG 58.115 39.130 0.00 0.00 39.96 3.16
7474 8125 4.952071 TCATGGCAAATTCCAAAGAACA 57.048 36.364 0.00 0.00 39.96 3.18
7476 8127 6.891361 TCTAGATCATGGCAAATTCCAAAGAA 59.109 34.615 0.00 0.00 39.96 2.52
7485 8136 6.830324 TGTAGCTTTTCTAGATCATGGCAAAT 59.170 34.615 0.00 0.00 0.00 2.32
7530 8209 3.070446 TCGTTCTAAAAGACCCTGAAGCA 59.930 43.478 0.00 0.00 0.00 3.91
7541 8220 0.036671 AGGGGCGGTCGTTCTAAAAG 60.037 55.000 0.00 0.00 0.00 2.27
7542 8221 0.397564 AAGGGGCGGTCGTTCTAAAA 59.602 50.000 0.00 0.00 0.00 1.52
7559 8238 4.362476 GTTGCGCCCAAGCCCAAG 62.362 66.667 4.18 0.00 37.45 3.61
7591 8270 4.440829 TCCTCGGGCATTTGGGGC 62.441 66.667 0.00 0.00 0.00 5.80
7592 8271 2.440247 GTCCTCGGGCATTTGGGG 60.440 66.667 0.00 0.00 0.00 4.96
7593 8272 2.824041 CGTCCTCGGGCATTTGGG 60.824 66.667 0.00 0.00 0.00 4.12
7594 8273 3.508840 GCGTCCTCGGGCATTTGG 61.509 66.667 0.00 0.00 37.56 3.28
7595 8274 2.745884 TGCGTCCTCGGGCATTTG 60.746 61.111 0.00 0.00 37.56 2.32
7601 8280 4.873129 CACGGATGCGTCCTCGGG 62.873 72.222 22.53 7.90 42.73 5.14
7602 8281 4.873129 CCACGGATGCGTCCTCGG 62.873 72.222 22.53 17.62 42.73 4.63
7603 8282 3.822192 TCCACGGATGCGTCCTCG 61.822 66.667 22.53 12.69 42.73 4.63
7604 8283 2.202756 GTCCACGGATGCGTCCTC 60.203 66.667 22.53 0.00 42.73 3.71
7605 8284 2.994995 TGTCCACGGATGCGTCCT 60.995 61.111 22.53 7.21 42.73 3.85
7606 8285 2.509336 CTGTCCACGGATGCGTCC 60.509 66.667 15.54 15.54 41.40 4.79
7607 8286 2.094659 CACTGTCCACGGATGCGTC 61.095 63.158 10.14 0.00 0.00 5.19
7608 8287 2.048222 CACTGTCCACGGATGCGT 60.048 61.111 6.39 6.39 0.00 5.24
7609 8288 2.094659 GTCACTGTCCACGGATGCG 61.095 63.158 4.58 4.58 0.00 4.73
7610 8289 1.741770 GGTCACTGTCCACGGATGC 60.742 63.158 0.00 0.00 0.00 3.91
7611 8290 1.446099 CGGTCACTGTCCACGGATG 60.446 63.158 0.00 0.00 0.00 3.51
7612 8291 2.970639 CGGTCACTGTCCACGGAT 59.029 61.111 0.00 0.00 0.00 4.18
7614 8293 2.646175 ATCCGGTCACTGTCCACGG 61.646 63.158 0.00 7.11 45.52 4.94
7615 8294 1.446099 CATCCGGTCACTGTCCACG 60.446 63.158 0.00 0.00 0.00 4.94
7616 8295 1.079127 CCATCCGGTCACTGTCCAC 60.079 63.158 0.00 0.00 0.00 4.02
7617 8296 2.954684 GCCATCCGGTCACTGTCCA 61.955 63.158 0.00 0.00 33.28 4.02
7618 8297 2.125106 GCCATCCGGTCACTGTCC 60.125 66.667 0.00 0.00 33.28 4.02
7619 8298 1.741770 GTGCCATCCGGTCACTGTC 60.742 63.158 0.00 0.00 36.77 3.51
7620 8299 1.841302 ATGTGCCATCCGGTCACTGT 61.841 55.000 0.00 0.00 39.01 3.55
7621 8300 0.677731 AATGTGCCATCCGGTCACTG 60.678 55.000 0.00 0.00 39.01 3.66
7622 8301 0.908910 TAATGTGCCATCCGGTCACT 59.091 50.000 0.00 0.00 39.01 3.41
7623 8302 1.670811 CTTAATGTGCCATCCGGTCAC 59.329 52.381 0.00 6.65 38.83 3.67
7624 8303 1.557371 TCTTAATGTGCCATCCGGTCA 59.443 47.619 0.00 0.00 33.28 4.02
7625 8304 2.325583 TCTTAATGTGCCATCCGGTC 57.674 50.000 0.00 0.00 33.28 4.79
7626 8305 3.297134 AATCTTAATGTGCCATCCGGT 57.703 42.857 0.00 0.00 33.28 5.28
7627 8306 4.654091 AAAATCTTAATGTGCCATCCGG 57.346 40.909 0.00 0.00 0.00 5.14
7628 8307 5.043248 GGAAAAATCTTAATGTGCCATCCG 58.957 41.667 0.00 0.00 0.00 4.18
7629 8308 5.359756 GGGAAAAATCTTAATGTGCCATCC 58.640 41.667 0.00 0.00 0.00 3.51
7630 8309 5.129320 AGGGGAAAAATCTTAATGTGCCATC 59.871 40.000 0.00 0.00 0.00 3.51
7631 8310 5.032170 AGGGGAAAAATCTTAATGTGCCAT 58.968 37.500 0.00 0.00 0.00 4.40
7632 8311 4.424842 AGGGGAAAAATCTTAATGTGCCA 58.575 39.130 0.00 0.00 0.00 4.92
7633 8312 5.069119 CCTAGGGGAAAAATCTTAATGTGCC 59.931 44.000 0.00 0.00 33.58 5.01
7634 8313 6.149129 CCTAGGGGAAAAATCTTAATGTGC 57.851 41.667 0.00 0.00 33.58 4.57
7654 8333 1.197812 GAACCCTAGGCGAAACCCTA 58.802 55.000 2.05 0.00 40.58 3.53
7655 8334 1.559965 GGAACCCTAGGCGAAACCCT 61.560 60.000 2.05 0.00 40.58 4.34
7656 8335 1.077930 GGAACCCTAGGCGAAACCC 60.078 63.158 2.05 0.00 40.58 4.11
7657 8336 0.675837 GTGGAACCCTAGGCGAAACC 60.676 60.000 2.05 2.68 39.61 3.27
7658 8337 2.850439 GTGGAACCCTAGGCGAAAC 58.150 57.895 2.05 0.00 0.00 2.78
7687 8366 2.646143 GACTCCGGCTAGATCGCC 59.354 66.667 0.00 1.72 46.68 5.54
7688 8367 2.194212 TGGACTCCGGCTAGATCGC 61.194 63.158 0.00 0.00 0.00 4.58
7689 8368 1.655329 GTGGACTCCGGCTAGATCG 59.345 63.158 0.00 0.00 0.00 3.69
7690 8369 1.102222 ACGTGGACTCCGGCTAGATC 61.102 60.000 0.00 0.00 0.00 2.75
7691 8370 0.182061 TACGTGGACTCCGGCTAGAT 59.818 55.000 0.00 0.00 0.00 1.98
7692 8371 0.035152 TTACGTGGACTCCGGCTAGA 60.035 55.000 0.00 0.00 0.00 2.43
7693 8372 0.813184 TTTACGTGGACTCCGGCTAG 59.187 55.000 0.00 0.00 0.00 3.42
7694 8373 1.255882 TTTTACGTGGACTCCGGCTA 58.744 50.000 0.00 0.00 0.00 3.93
7695 8374 0.611714 ATTTTACGTGGACTCCGGCT 59.388 50.000 0.00 0.00 0.00 5.52
7696 8375 1.004595 GATTTTACGTGGACTCCGGC 58.995 55.000 0.00 0.00 0.00 6.13
7697 8376 2.165845 AGAGATTTTACGTGGACTCCGG 59.834 50.000 0.00 0.00 0.00 5.14
7698 8377 3.436496 GAGAGATTTTACGTGGACTCCG 58.564 50.000 0.00 0.00 0.00 4.63
7699 8378 3.734293 CGGAGAGATTTTACGTGGACTCC 60.734 52.174 0.00 0.00 39.16 3.85
7700 8379 3.436496 CGGAGAGATTTTACGTGGACTC 58.564 50.000 0.00 0.19 0.00 3.36
7701 8380 2.165845 CCGGAGAGATTTTACGTGGACT 59.834 50.000 0.00 0.00 0.00 3.85
7702 8381 2.537401 CCGGAGAGATTTTACGTGGAC 58.463 52.381 0.00 0.00 0.00 4.02
7703 8382 1.134907 GCCGGAGAGATTTTACGTGGA 60.135 52.381 5.05 0.00 0.00 4.02
7704 8383 1.134788 AGCCGGAGAGATTTTACGTGG 60.135 52.381 5.05 0.00 0.00 4.94
7705 8384 2.295253 AGCCGGAGAGATTTTACGTG 57.705 50.000 5.05 0.00 0.00 4.49
7706 8385 2.100418 GGTAGCCGGAGAGATTTTACGT 59.900 50.000 5.05 0.00 0.00 3.57
7707 8386 2.740452 GGTAGCCGGAGAGATTTTACG 58.260 52.381 5.05 0.00 0.00 3.18
7708 8387 2.740452 CGGTAGCCGGAGAGATTTTAC 58.260 52.381 5.05 0.00 44.15 2.01
7721 8400 0.831307 ACCCAAAGAGATCGGTAGCC 59.169 55.000 0.00 0.00 0.00 3.93
7722 8401 1.536284 CGACCCAAAGAGATCGGTAGC 60.536 57.143 0.00 0.00 0.00 3.58
7723 8402 1.749634 ACGACCCAAAGAGATCGGTAG 59.250 52.381 0.00 0.00 38.88 3.18
7724 8403 1.747355 GACGACCCAAAGAGATCGGTA 59.253 52.381 0.00 0.00 38.88 4.02
7725 8404 0.531200 GACGACCCAAAGAGATCGGT 59.469 55.000 0.00 0.00 38.88 4.69
7726 8405 0.525668 CGACGACCCAAAGAGATCGG 60.526 60.000 0.00 0.00 38.88 4.18
7727 8406 0.525668 CCGACGACCCAAAGAGATCG 60.526 60.000 0.00 0.00 40.39 3.69
7728 8407 0.531200 ACCGACGACCCAAAGAGATC 59.469 55.000 0.00 0.00 0.00 2.75
7729 8408 0.246635 CACCGACGACCCAAAGAGAT 59.753 55.000 0.00 0.00 0.00 2.75
7730 8409 0.824595 TCACCGACGACCCAAAGAGA 60.825 55.000 0.00 0.00 0.00 3.10
7731 8410 0.388649 CTCACCGACGACCCAAAGAG 60.389 60.000 0.00 0.00 0.00 2.85
7732 8411 0.824595 TCTCACCGACGACCCAAAGA 60.825 55.000 0.00 0.00 0.00 2.52
7733 8412 0.246635 ATCTCACCGACGACCCAAAG 59.753 55.000 0.00 0.00 0.00 2.77
7734 8413 0.245539 GATCTCACCGACGACCCAAA 59.754 55.000 0.00 0.00 0.00 3.28
7735 8414 0.611062 AGATCTCACCGACGACCCAA 60.611 55.000 0.00 0.00 0.00 4.12
7736 8415 0.253894 TAGATCTCACCGACGACCCA 59.746 55.000 0.00 0.00 0.00 4.51
7737 8416 1.536331 GATAGATCTCACCGACGACCC 59.464 57.143 0.00 0.00 0.00 4.46
7738 8417 2.219458 TGATAGATCTCACCGACGACC 58.781 52.381 0.00 0.00 0.00 4.79
7739 8418 3.749088 AGATGATAGATCTCACCGACGAC 59.251 47.826 0.00 0.00 0.00 4.34
7740 8419 3.997681 GAGATGATAGATCTCACCGACGA 59.002 47.826 0.00 0.00 42.96 4.20
7741 8420 3.126171 GGAGATGATAGATCTCACCGACG 59.874 52.174 12.52 0.00 44.70 5.12
7742 8421 3.442273 GGGAGATGATAGATCTCACCGAC 59.558 52.174 12.52 0.00 44.70 4.79
7743 8422 3.691575 GGGAGATGATAGATCTCACCGA 58.308 50.000 12.52 0.00 44.70 4.69
7744 8423 2.421775 CGGGAGATGATAGATCTCACCG 59.578 54.545 18.63 18.63 43.74 4.94
7745 8424 2.165437 GCGGGAGATGATAGATCTCACC 59.835 54.545 12.52 10.11 43.74 4.02
7746 8425 2.165437 GGCGGGAGATGATAGATCTCAC 59.835 54.545 12.52 8.57 44.70 3.51
7747 8426 2.451490 GGCGGGAGATGATAGATCTCA 58.549 52.381 12.52 0.00 44.70 3.27
7748 8427 1.403679 CGGCGGGAGATGATAGATCTC 59.596 57.143 0.00 0.00 42.78 2.75
7749 8428 1.272203 ACGGCGGGAGATGATAGATCT 60.272 52.381 13.24 0.00 0.00 2.75
7750 8429 1.135257 CACGGCGGGAGATGATAGATC 60.135 57.143 13.24 0.00 0.00 2.75
7751 8430 0.891373 CACGGCGGGAGATGATAGAT 59.109 55.000 13.24 0.00 0.00 1.98
7752 8431 0.467474 ACACGGCGGGAGATGATAGA 60.467 55.000 19.75 0.00 0.00 1.98
7753 8432 0.319040 CACACGGCGGGAGATGATAG 60.319 60.000 19.75 0.00 0.00 2.08
7754 8433 1.040893 ACACACGGCGGGAGATGATA 61.041 55.000 19.75 0.00 0.00 2.15
7755 8434 2.359169 ACACACGGCGGGAGATGAT 61.359 57.895 19.75 0.00 0.00 2.45
7756 8435 2.994995 ACACACGGCGGGAGATGA 60.995 61.111 19.75 0.00 0.00 2.92
8012 8691 4.521062 ATCGCTGCTGCCTCCGTC 62.521 66.667 10.24 0.00 35.36 4.79
8013 8692 4.827087 CATCGCTGCTGCCTCCGT 62.827 66.667 10.24 0.00 35.36 4.69
8015 8694 2.985512 CTACCATCGCTGCTGCCTCC 62.986 65.000 10.24 0.00 35.36 4.30
8016 8695 1.593750 CTACCATCGCTGCTGCCTC 60.594 63.158 10.24 0.00 35.36 4.70
8017 8696 2.503061 CTACCATCGCTGCTGCCT 59.497 61.111 10.24 0.00 35.36 4.75
8018 8697 3.275338 GCTACCATCGCTGCTGCC 61.275 66.667 10.24 0.00 35.36 4.85
8019 8698 3.634072 CGCTACCATCGCTGCTGC 61.634 66.667 5.34 5.34 0.00 5.25
8020 8699 2.963854 CCGCTACCATCGCTGCTG 60.964 66.667 0.00 0.00 0.00 4.41
8021 8700 4.899239 GCCGCTACCATCGCTGCT 62.899 66.667 0.00 0.00 35.19 4.24
8039 8718 4.222847 GATCCACCCGACCGCTCC 62.223 72.222 0.00 0.00 0.00 4.70
8040 8719 3.432051 CTGATCCACCCGACCGCTC 62.432 68.421 0.00 0.00 0.00 5.03
8041 8720 3.461773 CTGATCCACCCGACCGCT 61.462 66.667 0.00 0.00 0.00 5.52
8042 8721 4.530857 CCTGATCCACCCGACCGC 62.531 72.222 0.00 0.00 0.00 5.68
8043 8722 3.849951 CCCTGATCCACCCGACCG 61.850 72.222 0.00 0.00 0.00 4.79
8044 8723 4.176752 GCCCTGATCCACCCGACC 62.177 72.222 0.00 0.00 0.00 4.79
8045 8724 3.391665 CTGCCCTGATCCACCCGAC 62.392 68.421 0.00 0.00 0.00 4.79
8046 8725 3.083349 CTGCCCTGATCCACCCGA 61.083 66.667 0.00 0.00 0.00 5.14
8047 8726 4.181010 CCTGCCCTGATCCACCCG 62.181 72.222 0.00 0.00 0.00 5.28
8048 8727 4.512914 GCCTGCCCTGATCCACCC 62.513 72.222 0.00 0.00 0.00 4.61
8049 8728 3.286694 TTGCCTGCCCTGATCCACC 62.287 63.158 0.00 0.00 0.00 4.61
8050 8729 1.751927 CTTGCCTGCCCTGATCCAC 60.752 63.158 0.00 0.00 0.00 4.02
8051 8730 1.918467 CTCTTGCCTGCCCTGATCCA 61.918 60.000 0.00 0.00 0.00 3.41
8052 8731 1.153005 CTCTTGCCTGCCCTGATCC 60.153 63.158 0.00 0.00 0.00 3.36
8053 8732 1.153005 CCTCTTGCCTGCCCTGATC 60.153 63.158 0.00 0.00 0.00 2.92
8054 8733 2.687610 CCCTCTTGCCTGCCCTGAT 61.688 63.158 0.00 0.00 0.00 2.90
8055 8734 3.333219 CCCTCTTGCCTGCCCTGA 61.333 66.667 0.00 0.00 0.00 3.86
8056 8735 4.437587 CCCCTCTTGCCTGCCCTG 62.438 72.222 0.00 0.00 0.00 4.45
8059 8738 2.150014 TAAACCCCCTCTTGCCTGCC 62.150 60.000 0.00 0.00 0.00 4.85
8060 8739 0.681243 CTAAACCCCCTCTTGCCTGC 60.681 60.000 0.00 0.00 0.00 4.85
8061 8740 0.991920 TCTAAACCCCCTCTTGCCTG 59.008 55.000 0.00 0.00 0.00 4.85
8062 8741 1.290134 CTCTAAACCCCCTCTTGCCT 58.710 55.000 0.00 0.00 0.00 4.75
8063 8742 0.256177 CCTCTAAACCCCCTCTTGCC 59.744 60.000 0.00 0.00 0.00 4.52
8064 8743 1.210722 CTCCTCTAAACCCCCTCTTGC 59.789 57.143 0.00 0.00 0.00 4.01
8065 8744 1.840635 CCTCCTCTAAACCCCCTCTTG 59.159 57.143 0.00 0.00 0.00 3.02
8066 8745 1.728701 TCCTCCTCTAAACCCCCTCTT 59.271 52.381 0.00 0.00 0.00 2.85
8067 8746 1.405243 TCCTCCTCTAAACCCCCTCT 58.595 55.000 0.00 0.00 0.00 3.69
8068 8747 2.498473 ATCCTCCTCTAAACCCCCTC 57.502 55.000 0.00 0.00 0.00 4.30
8069 8748 2.872945 AGTATCCTCCTCTAAACCCCCT 59.127 50.000 0.00 0.00 0.00 4.79
8070 8749 3.347759 AGTATCCTCCTCTAAACCCCC 57.652 52.381 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.