Multiple sequence alignment - TraesCS5B01G062000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G062000 chr5B 100.000 8956 0 0 1 8956 69562414 69553459 0.000000e+00 16539.0
1 TraesCS5B01G062000 chr5B 99.606 507 1 1 1 506 487457604 487458110 0.000000e+00 924.0
2 TraesCS5B01G062000 chr5B 99.014 507 4 1 1 506 503090212 503089706 0.000000e+00 907.0
3 TraesCS5B01G062000 chr5B 80.777 515 50 19 3 505 26449715 26449238 3.070000e-94 357.0
4 TraesCS5B01G062000 chr5B 98.551 69 1 0 502 570 487458149 487458217 1.220000e-23 122.0
5 TraesCS5B01G062000 chr5A 95.346 4104 134 32 1756 5817 51208173 51212261 0.000000e+00 6468.0
6 TraesCS5B01G062000 chr5A 95.412 1722 57 14 5810 7524 51212882 51214588 0.000000e+00 2723.0
7 TraesCS5B01G062000 chr5A 91.709 977 53 17 7527 8489 51215766 51216728 0.000000e+00 1330.0
8 TraesCS5B01G062000 chr5A 91.750 703 40 9 787 1485 51207304 51207992 0.000000e+00 961.0
9 TraesCS5B01G062000 chr5A 93.968 431 24 2 2 430 551449700 551449270 0.000000e+00 651.0
10 TraesCS5B01G062000 chr5A 87.778 180 14 6 8537 8710 51216728 51216905 4.240000e-48 204.0
11 TraesCS5B01G062000 chr5A 92.593 81 5 1 8721 8800 51216960 51217040 2.040000e-21 115.0
12 TraesCS5B01G062000 chr5A 92.958 71 5 0 717 787 51207198 51207268 4.420000e-18 104.0
13 TraesCS5B01G062000 chr5D 94.119 3537 125 31 681 4197 61052537 61056010 0.000000e+00 5302.0
14 TraesCS5B01G062000 chr5D 94.896 2684 96 21 5902 8558 61058099 61060768 0.000000e+00 4159.0
15 TraesCS5B01G062000 chr5D 97.827 1703 32 5 4196 5893 61056225 61057927 0.000000e+00 2935.0
16 TraesCS5B01G062000 chr5D 85.650 446 51 8 3 438 395832071 395832513 2.950000e-124 457.0
17 TraesCS5B01G062000 chr5D 85.211 142 16 4 8713 8849 61060858 61060999 3.370000e-29 141.0
18 TraesCS5B01G062000 chr7B 95.266 507 22 2 1 505 658412296 658411790 0.000000e+00 802.0
19 TraesCS5B01G062000 chr7B 94.495 109 6 0 8847 8955 547472768 547472660 1.550000e-37 169.0
20 TraesCS5B01G062000 chr7B 94.495 109 6 0 8847 8955 547549430 547549322 1.550000e-37 169.0
21 TraesCS5B01G062000 chr7B 92.647 68 5 0 502 569 723773685 723773618 2.060000e-16 99.0
22 TraesCS5B01G062000 chr7B 91.429 70 4 2 502 570 322658455 322658387 2.660000e-15 95.3
23 TraesCS5B01G062000 chr7B 91.176 68 6 0 503 570 590805943 590805876 9.570000e-15 93.5
24 TraesCS5B01G062000 chr1D 88.304 513 46 7 3 507 475331493 475331999 3.580000e-168 603.0
25 TraesCS5B01G062000 chr4A 94.837 368 17 2 2 367 671047864 671047497 2.800000e-159 573.0
26 TraesCS5B01G062000 chr7D 83.236 513 56 21 3 507 2874008 2874498 2.290000e-120 444.0
27 TraesCS5B01G062000 chr7D 94.495 109 6 0 8847 8955 58205556 58205448 1.550000e-37 169.0
28 TraesCS5B01G062000 chr1A 82.375 261 32 8 5376 5623 4782339 4782598 1.960000e-51 215.0
29 TraesCS5B01G062000 chr1A 81.857 237 34 6 4983 5218 5651523 5651295 3.300000e-44 191.0
30 TraesCS5B01G062000 chr1A 88.350 103 9 3 5507 5608 6343215 6343115 4.390000e-23 121.0
31 TraesCS5B01G062000 chr1A 88.710 62 4 1 5443 5504 6343304 6343246 1.250000e-08 73.1
32 TraesCS5B01G062000 chr2B 96.154 104 4 0 8848 8951 766568163 766568266 4.300000e-38 171.0
33 TraesCS5B01G062000 chr2B 92.982 114 6 2 8838 8949 601203618 601203731 2.000000e-36 165.0
34 TraesCS5B01G062000 chr2B 91.176 68 6 0 502 569 452779533 452779600 9.570000e-15 93.5
35 TraesCS5B01G062000 chr1B 95.327 107 5 0 8845 8951 624662916 624663022 4.300000e-38 171.0
36 TraesCS5B01G062000 chr1B 84.211 114 15 3 5496 5608 629586698 629586809 3.420000e-19 108.0
37 TraesCS5B01G062000 chr1B 91.304 69 6 0 502 570 685116648 685116580 2.660000e-15 95.3
38 TraesCS5B01G062000 chr1B 91.045 67 6 0 502 568 1726350 1726284 3.440000e-14 91.6
39 TraesCS5B01G062000 chr1B 87.097 62 5 1 5443 5504 629586620 629586678 5.800000e-07 67.6
40 TraesCS5B01G062000 chrUn 94.495 109 6 0 8847 8955 218382134 218382242 1.550000e-37 169.0
41 TraesCS5B01G062000 chrUn 94.495 109 6 0 8847 8955 218399682 218399790 1.550000e-37 169.0
42 TraesCS5B01G062000 chrUn 94.495 109 6 0 8847 8955 478682130 478682022 1.550000e-37 169.0
43 TraesCS5B01G062000 chr2A 87.273 110 10 3 4725 4834 754689742 754689847 1.220000e-23 122.0
44 TraesCS5B01G062000 chr2A 85.455 110 16 0 4704 4813 754689294 754689403 2.040000e-21 115.0
45 TraesCS5B01G062000 chr3A 92.647 68 5 0 502 569 495018609 495018542 2.060000e-16 99.0
46 TraesCS5B01G062000 chr6A 91.429 70 4 2 502 570 90094306 90094238 2.660000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G062000 chr5B 69553459 69562414 8955 True 16539.000000 16539 100.000000 1 8956 1 chr5B.!!$R2 8955
1 TraesCS5B01G062000 chr5B 503089706 503090212 506 True 907.000000 907 99.014000 1 506 1 chr5B.!!$R3 505
2 TraesCS5B01G062000 chr5B 487457604 487458217 613 False 523.000000 924 99.078500 1 570 2 chr5B.!!$F1 569
3 TraesCS5B01G062000 chr5A 51207198 51217040 9842 False 1700.714286 6468 92.506571 717 8800 7 chr5A.!!$F1 8083
4 TraesCS5B01G062000 chr5D 61052537 61060999 8462 False 3134.250000 5302 93.013250 681 8849 4 chr5D.!!$F2 8168
5 TraesCS5B01G062000 chr7B 658411790 658412296 506 True 802.000000 802 95.266000 1 505 1 chr7B.!!$R5 504
6 TraesCS5B01G062000 chr1D 475331493 475331999 506 False 603.000000 603 88.304000 3 507 1 chr1D.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 977 0.388134 TTCGTCTCCTTTTCCGCGAG 60.388 55.000 8.23 0.00 0.00 5.03 F
1664 1779 0.174162 GGGCAATTCCATGTGTCAGC 59.826 55.000 0.00 0.00 36.21 4.26 F
2338 2467 1.956620 GCAGCTCGCTTTCACGGTAC 61.957 60.000 1.48 0.00 37.77 3.34 F
2605 2743 2.367486 GCAGACGGAAGAGTACCTACT 58.633 52.381 0.00 0.00 39.71 2.57 F
3372 3516 2.490115 TGTTGCGTTTGTTGTTTCTCCT 59.510 40.909 0.00 0.00 0.00 3.69 F
5150 5520 2.303175 TGTTCCCTTCCTTTTTGGACG 58.697 47.619 0.00 0.00 46.14 4.79 F
5561 5931 1.924524 CGTTCACCATTAGCACCTACG 59.075 52.381 0.00 0.00 0.00 3.51 F
6957 8123 2.232399 TCAACTGTGATGCTGCATGTT 58.768 42.857 21.53 14.44 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2605 2743 1.458486 CACCTTGCCAGGGGTTGTA 59.542 57.895 8.98 0.0 46.01 2.41 R
3355 3499 3.105937 GTGAAGGAGAAACAACAAACGC 58.894 45.455 0.00 0.0 0.00 4.84 R
3859 4003 2.573462 TCTGCCAAGTCCTTTAGAGCAT 59.427 45.455 0.00 0.0 0.00 3.79 R
4399 4760 1.278127 CCCAACACAGAATAGGACGGT 59.722 52.381 0.00 0.0 0.00 4.83 R
5336 5706 4.497473 TTTCTTTTCTGCATTACCACGG 57.503 40.909 0.00 0.0 0.00 4.94 R
6555 7721 1.687563 ACCAGTCTTCCAAAAACCGG 58.312 50.000 0.00 0.0 0.00 5.28 R
6989 8155 2.158871 AGCGGGGCACTCGAATAAATTA 60.159 45.455 0.75 0.0 0.00 1.40 R
8575 10983 0.031917 TAGGGCCTACGGGTCATCAA 60.032 55.000 9.81 0.0 39.39 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
561 613 5.597813 CAATCGCTGCTTTATTAGTAGGG 57.402 43.478 0.00 0.00 46.42 3.53
570 622 8.940952 GCTGCTTTATTAGTAGGGAAAGATATG 58.059 37.037 0.00 0.00 37.11 1.78
572 624 9.998106 TGCTTTATTAGTAGGGAAAGATATGTC 57.002 33.333 0.00 0.00 31.83 3.06
573 625 9.141400 GCTTTATTAGTAGGGAAAGATATGTCG 57.859 37.037 0.00 0.00 31.83 4.35
574 626 9.141400 CTTTATTAGTAGGGAAAGATATGTCGC 57.859 37.037 0.00 0.00 31.83 5.19
575 627 6.919775 ATTAGTAGGGAAAGATATGTCGCT 57.080 37.500 2.35 2.35 39.96 4.93
576 628 9.524496 TTATTAGTAGGGAAAGATATGTCGCTA 57.476 33.333 0.35 0.35 38.02 4.26
577 629 8.596781 ATTAGTAGGGAAAGATATGTCGCTAT 57.403 34.615 7.49 1.24 40.24 2.97
578 630 6.919775 AGTAGGGAAAGATATGTCGCTATT 57.080 37.500 7.49 1.21 40.24 1.73
579 631 9.524496 TTAGTAGGGAAAGATATGTCGCTATTA 57.476 33.333 7.49 5.39 40.24 0.98
580 632 8.596781 AGTAGGGAAAGATATGTCGCTATTAT 57.403 34.615 7.49 0.00 40.24 1.28
581 633 9.036980 AGTAGGGAAAGATATGTCGCTATTATT 57.963 33.333 7.49 0.00 40.24 1.40
582 634 9.303537 GTAGGGAAAGATATGTCGCTATTATTC 57.696 37.037 7.49 0.00 40.24 1.75
583 635 7.036220 AGGGAAAGATATGTCGCTATTATTCG 58.964 38.462 0.00 0.00 35.47 3.34
584 636 6.812160 GGGAAAGATATGTCGCTATTATTCGT 59.188 38.462 0.00 0.00 0.00 3.85
585 637 7.972277 GGGAAAGATATGTCGCTATTATTCGTA 59.028 37.037 0.00 0.00 0.00 3.43
586 638 9.517609 GGAAAGATATGTCGCTATTATTCGTAT 57.482 33.333 0.00 0.00 0.00 3.06
589 641 9.723447 AAGATATGTCGCTATTATTCGTATCTG 57.277 33.333 0.00 0.00 37.40 2.90
590 642 8.894731 AGATATGTCGCTATTATTCGTATCTGT 58.105 33.333 0.00 0.00 36.57 3.41
591 643 9.504710 GATATGTCGCTATTATTCGTATCTGTT 57.495 33.333 0.00 0.00 0.00 3.16
592 644 9.856488 ATATGTCGCTATTATTCGTATCTGTTT 57.144 29.630 0.00 0.00 0.00 2.83
593 645 7.997107 TGTCGCTATTATTCGTATCTGTTTT 57.003 32.000 0.00 0.00 0.00 2.43
594 646 7.837505 TGTCGCTATTATTCGTATCTGTTTTG 58.162 34.615 0.00 0.00 0.00 2.44
595 647 7.703197 TGTCGCTATTATTCGTATCTGTTTTGA 59.297 33.333 0.00 0.00 0.00 2.69
596 648 8.537223 GTCGCTATTATTCGTATCTGTTTTGAA 58.463 33.333 0.00 0.00 0.00 2.69
597 649 9.256477 TCGCTATTATTCGTATCTGTTTTGAAT 57.744 29.630 0.00 0.00 34.03 2.57
598 650 9.517361 CGCTATTATTCGTATCTGTTTTGAATC 57.483 33.333 0.00 0.00 32.07 2.52
646 698 8.827177 TTTATATTGGAGTAACACATCCGATC 57.173 34.615 0.00 0.00 39.83 3.69
647 699 4.753516 ATTGGAGTAACACATCCGATCA 57.246 40.909 0.00 0.00 35.13 2.92
648 700 3.801114 TGGAGTAACACATCCGATCAG 57.199 47.619 0.00 0.00 38.52 2.90
649 701 2.159099 TGGAGTAACACATCCGATCAGC 60.159 50.000 0.00 0.00 38.52 4.26
650 702 2.159099 GGAGTAACACATCCGATCAGCA 60.159 50.000 0.00 0.00 0.00 4.41
651 703 3.493350 GGAGTAACACATCCGATCAGCAT 60.493 47.826 0.00 0.00 0.00 3.79
652 704 4.262036 GGAGTAACACATCCGATCAGCATA 60.262 45.833 0.00 0.00 0.00 3.14
653 705 5.473931 GAGTAACACATCCGATCAGCATAT 58.526 41.667 0.00 0.00 0.00 1.78
654 706 5.233225 AGTAACACATCCGATCAGCATATG 58.767 41.667 0.00 0.00 0.00 1.78
655 707 3.758755 ACACATCCGATCAGCATATGT 57.241 42.857 4.29 0.00 0.00 2.29
656 708 4.871933 ACACATCCGATCAGCATATGTA 57.128 40.909 4.29 0.00 0.00 2.29
657 709 5.411831 ACACATCCGATCAGCATATGTAT 57.588 39.130 4.29 0.00 0.00 2.29
658 710 5.798132 ACACATCCGATCAGCATATGTATT 58.202 37.500 4.29 0.00 0.00 1.89
659 711 6.233434 ACACATCCGATCAGCATATGTATTT 58.767 36.000 4.29 0.00 0.00 1.40
660 712 6.148315 ACACATCCGATCAGCATATGTATTTG 59.852 38.462 4.29 0.00 0.00 2.32
661 713 6.148315 CACATCCGATCAGCATATGTATTTGT 59.852 38.462 4.29 0.00 0.00 2.83
662 714 7.331687 CACATCCGATCAGCATATGTATTTGTA 59.668 37.037 4.29 0.00 0.00 2.41
663 715 8.043113 ACATCCGATCAGCATATGTATTTGTAT 58.957 33.333 4.29 0.00 0.00 2.29
664 716 8.886719 CATCCGATCAGCATATGTATTTGTATT 58.113 33.333 4.29 0.00 0.00 1.89
665 717 8.479313 TCCGATCAGCATATGTATTTGTATTC 57.521 34.615 4.29 0.00 0.00 1.75
666 718 8.093927 TCCGATCAGCATATGTATTTGTATTCA 58.906 33.333 4.29 0.00 0.00 2.57
667 719 8.886719 CCGATCAGCATATGTATTTGTATTCAT 58.113 33.333 4.29 0.00 0.00 2.57
701 753 9.490663 CAGGCTATTCGTATTTGTTTAGAAAAG 57.509 33.333 0.00 0.00 0.00 2.27
756 811 0.808755 CGTTTCTGGGCCATTGTACC 59.191 55.000 6.72 0.00 0.00 3.34
772 827 0.454600 TACCTTCGTGCGGACTGATC 59.545 55.000 5.27 0.00 0.00 2.92
847 941 2.288030 CCGTCTACAACACTTCTCCGTT 60.288 50.000 0.00 0.00 0.00 4.44
863 975 1.779683 GTTCGTCTCCTTTTCCGCG 59.220 57.895 0.00 0.00 0.00 6.46
864 976 0.665369 GTTCGTCTCCTTTTCCGCGA 60.665 55.000 8.23 0.00 0.00 5.87
865 977 0.388134 TTCGTCTCCTTTTCCGCGAG 60.388 55.000 8.23 0.00 0.00 5.03
866 978 1.211969 CGTCTCCTTTTCCGCGAGA 59.788 57.895 8.23 0.00 0.00 4.04
867 979 1.071567 CGTCTCCTTTTCCGCGAGAC 61.072 60.000 8.23 9.90 45.90 3.36
868 980 1.071567 GTCTCCTTTTCCGCGAGACG 61.072 60.000 8.23 0.00 42.13 4.18
878 990 2.102357 GCGAGACGATTCGAGGCA 59.898 61.111 13.95 0.00 43.03 4.75
879 991 1.941734 GCGAGACGATTCGAGGCAG 60.942 63.158 13.95 1.45 43.03 4.85
880 992 1.941734 CGAGACGATTCGAGGCAGC 60.942 63.158 13.95 0.00 43.03 5.25
905 1017 4.436998 CCACCTCCTCGCCGTGTC 62.437 72.222 0.00 0.00 0.00 3.67
1083 1195 3.037485 CGAGTTCCGCTTCTTCCTC 57.963 57.895 0.00 0.00 0.00 3.71
1213 1328 3.652869 TCCCCAAATCTCTCTTGTGTTCT 59.347 43.478 0.00 0.00 0.00 3.01
1227 1342 2.368875 TGTGTTCTCTTCTGACCTTCCC 59.631 50.000 0.00 0.00 0.00 3.97
1229 1344 3.071747 GTGTTCTCTTCTGACCTTCCCTT 59.928 47.826 0.00 0.00 0.00 3.95
1231 1346 4.166144 TGTTCTCTTCTGACCTTCCCTTTT 59.834 41.667 0.00 0.00 0.00 2.27
1232 1347 4.625607 TCTCTTCTGACCTTCCCTTTTC 57.374 45.455 0.00 0.00 0.00 2.29
1233 1348 4.235372 TCTCTTCTGACCTTCCCTTTTCT 58.765 43.478 0.00 0.00 0.00 2.52
1358 1473 2.750637 TCGCTCTGTCCCGTCTCC 60.751 66.667 0.00 0.00 0.00 3.71
1373 1488 3.082548 CGTCTCCCCATACGATCTGTAT 58.917 50.000 0.00 4.91 44.73 2.29
1374 1489 4.259356 CGTCTCCCCATACGATCTGTATA 58.741 47.826 9.03 0.00 41.93 1.47
1405 1520 4.353777 ACTAGATGGTCTGCAGAAACCTA 58.646 43.478 20.19 15.31 36.47 3.08
1415 1530 5.008415 GTCTGCAGAAACCTATGGATGAATG 59.992 44.000 20.19 0.00 0.00 2.67
1433 1548 9.132521 GGATGAATGAACTTTGTTAAATGTGAG 57.867 33.333 0.00 0.00 0.00 3.51
1493 1608 2.907458 AACTGAAATAGCCAAGGCCT 57.093 45.000 0.00 0.00 43.17 5.19
1532 1647 6.237915 GGTGTTCAGAAAGCACAAATGAAAAG 60.238 38.462 6.31 0.00 35.05 2.27
1539 1654 7.166473 CAGAAAGCACAAATGAAAAGTCAGTAC 59.834 37.037 0.00 0.00 37.14 2.73
1569 1684 3.969287 AGATAGCACAGCTGAAGACAA 57.031 42.857 23.35 0.45 40.10 3.18
1600 1715 5.883673 TGAAGTAAATGGAACGGGGAATAAG 59.116 40.000 0.00 0.00 0.00 1.73
1625 1740 4.273005 ACTTTTGCCTAATTACGATGCG 57.727 40.909 0.00 0.00 0.00 4.73
1664 1779 0.174162 GGGCAATTCCATGTGTCAGC 59.826 55.000 0.00 0.00 36.21 4.26
1711 1826 7.738847 ACATCACAATTTGGAAGGAAAAGAAT 58.261 30.769 0.78 0.00 0.00 2.40
1805 1928 5.941948 AAAGATTTAACTGGGAAGTGACG 57.058 39.130 0.00 0.00 0.00 4.35
1818 1941 2.550830 AGTGACGAAAGCATTGGAGT 57.449 45.000 0.00 0.00 0.00 3.85
1862 1985 6.975772 GCTAAAAGTACATCTAGAGGTCACTG 59.024 42.308 14.29 0.00 0.00 3.66
1877 2000 4.782156 AGGTCACTGAGGAGAGAATTTCAT 59.218 41.667 0.00 0.00 0.00 2.57
2055 2184 9.563748 CAATTAAAAGGATTTGGAATGGCATAT 57.436 29.630 0.00 0.00 39.02 1.78
2064 2193 8.316214 GGATTTGGAATGGCATATGTTTCATAT 58.684 33.333 0.00 0.00 0.00 1.78
2182 2311 6.531439 GTTACTTAACAACCAGAAGTATGCG 58.469 40.000 0.00 0.00 36.00 4.73
2187 2316 7.277981 ACTTAACAACCAGAAGTATGCGATTAG 59.722 37.037 0.00 0.00 31.69 1.73
2313 2442 3.431766 CCAAATACAGGGACCTAACCTCG 60.432 52.174 0.00 0.00 35.78 4.63
2338 2467 1.956620 GCAGCTCGCTTTCACGGTAC 61.957 60.000 1.48 0.00 37.77 3.34
2605 2743 2.367486 GCAGACGGAAGAGTACCTACT 58.633 52.381 0.00 0.00 39.71 2.57
3355 3499 5.069485 GCAAACTGCAGTATGTTTTGTTG 57.931 39.130 22.01 18.24 44.26 3.33
3369 3513 4.508124 TGTTTTGTTGCGTTTGTTGTTTCT 59.492 33.333 0.00 0.00 0.00 2.52
3372 3516 2.490115 TGTTGCGTTTGTTGTTTCTCCT 59.510 40.909 0.00 0.00 0.00 3.69
3572 3716 3.134804 ACGATCCAGGTGCTTAGCTTAAT 59.865 43.478 5.60 0.00 0.00 1.40
3583 3727 9.327731 AGGTGCTTAGCTTAATAGGAATATACT 57.672 33.333 5.60 0.00 0.00 2.12
3827 3971 7.862512 TTGTCATACTTCATATGTGCATCAA 57.137 32.000 1.90 0.00 41.44 2.57
3859 4003 3.195396 GGGGATGTTTCTTTGCTTGCATA 59.805 43.478 0.00 0.00 0.00 3.14
3873 4017 4.133078 GCTTGCATATGCTCTAAAGGACT 58.867 43.478 27.13 0.00 42.66 3.85
3920 4064 6.350277 GGAGATACTAAATCCACATACCTCGG 60.350 46.154 0.00 0.00 33.08 4.63
4007 4151 3.855689 AGCGGTTGAATTGATTGGAAG 57.144 42.857 0.00 0.00 0.00 3.46
4184 4328 4.817318 TTGTTTGTTGCCCTTTCTTCTT 57.183 36.364 0.00 0.00 0.00 2.52
4303 4664 4.312443 TGTCGGGTCTGTTTATTCAGTTC 58.688 43.478 0.00 0.00 36.85 3.01
4376 4737 5.474578 AGAGACACTGTCTGCTCATTTTA 57.525 39.130 16.69 0.00 43.53 1.52
4623 4991 6.553100 AGATGATTCTCCCACCTCTTAGTAAG 59.447 42.308 3.29 3.29 0.00 2.34
4628 4996 7.860649 TTCTCCCACCTCTTAGTAAGTAAAA 57.139 36.000 9.71 0.00 0.00 1.52
5150 5520 2.303175 TGTTCCCTTCCTTTTTGGACG 58.697 47.619 0.00 0.00 46.14 4.79
5442 5812 6.141685 GGTAAAACTTGTTACAAATGCTCACG 59.858 38.462 0.00 0.00 35.96 4.35
5561 5931 1.924524 CGTTCACCATTAGCACCTACG 59.075 52.381 0.00 0.00 0.00 3.51
5627 5997 4.589908 AGAGTTCCTTAATTCCATTGCGT 58.410 39.130 0.00 0.00 0.00 5.24
5772 6142 8.630054 TTGGCTTTTGTTATAGTCTGTATGTT 57.370 30.769 0.00 0.00 0.00 2.71
5786 6156 3.202097 TGTATGTTGGCATGTATCACCG 58.798 45.455 0.00 0.00 36.58 4.94
5895 6895 6.591935 TGCTAACTTGCCACTTAAGCTATAT 58.408 36.000 1.29 0.00 0.00 0.86
5896 6896 7.054124 TGCTAACTTGCCACTTAAGCTATATT 58.946 34.615 1.29 0.00 0.00 1.28
5897 6897 7.556275 TGCTAACTTGCCACTTAAGCTATATTT 59.444 33.333 1.29 0.00 0.00 1.40
5981 7147 7.147312 CACATAACTGTGTCCAATCATTGTTT 58.853 34.615 0.00 0.00 46.33 2.83
6328 7494 6.254522 ACATCTCAGTACCTACCTACTTGTT 58.745 40.000 0.00 0.00 0.00 2.83
6521 7687 2.483877 CGCTTGCACAGGTAATTTGAGA 59.516 45.455 0.00 0.00 0.00 3.27
6522 7688 3.425359 CGCTTGCACAGGTAATTTGAGAG 60.425 47.826 0.00 0.00 0.00 3.20
6564 7730 3.427503 CCAGTAGCTAATGCCGGTTTTTG 60.428 47.826 15.64 0.00 40.80 2.44
6957 8123 2.232399 TCAACTGTGATGCTGCATGTT 58.768 42.857 21.53 14.44 0.00 2.71
6977 8143 7.201496 GCATGTTCAACTCCATTCATTTTCATC 60.201 37.037 0.00 0.00 0.00 2.92
6988 8154 8.108999 TCCATTCATTTTCATCTAGAGGAAACA 58.891 33.333 27.32 19.43 40.25 2.83
6989 8155 8.910944 CCATTCATTTTCATCTAGAGGAAACAT 58.089 33.333 27.32 20.48 40.25 2.71
7008 8174 3.813166 ACATAATTTATTCGAGTGCCCCG 59.187 43.478 0.00 0.00 0.00 5.73
7023 8189 3.616821 GTGCCCCGCTTCATTTTTATTTC 59.383 43.478 0.00 0.00 0.00 2.17
7116 8282 9.787435 TCAACTAGGTGTTTATTAATTGTGACT 57.213 29.630 7.85 0.00 36.63 3.41
7136 8302 8.360390 TGTGACTGATATTCTGATTTATAGCGT 58.640 33.333 0.00 0.00 0.00 5.07
7147 8314 6.479990 TCTGATTTATAGCGTCAACAAGATGG 59.520 38.462 0.00 0.00 33.68 3.51
7151 8318 7.624360 TTTATAGCGTCAACAAGATGGAATT 57.376 32.000 0.00 0.00 33.68 2.17
7249 8416 3.087031 CTGACAATGGCATCCAGTTCTT 58.913 45.455 0.00 0.00 36.75 2.52
7291 8458 6.703607 GTCTACATGAGCTATATGCAGTTTGT 59.296 38.462 0.00 0.00 45.94 2.83
7394 8561 2.365293 GTGCCTTTTCCATGTGGACTTT 59.635 45.455 0.15 0.00 45.39 2.66
7547 9889 5.477984 TCCATTTGCTACAGCTCTTTGAATT 59.522 36.000 2.44 0.00 42.66 2.17
7583 9925 6.564328 CCTTTTGGATTTCAGCCAATACTAC 58.436 40.000 0.00 0.00 44.30 2.73
7709 10051 0.324614 TCTCTGCCGAGGAAAATGCA 59.675 50.000 5.22 0.00 37.86 3.96
7712 10054 0.454957 CTGCCGAGGAAAATGCAACG 60.455 55.000 0.00 0.00 32.58 4.10
7773 10116 0.947660 TCACAAAGAGCAGAGCAGCG 60.948 55.000 0.00 0.00 40.15 5.18
7794 10137 4.506654 GCGTATAATCACATGTCGTTTCCT 59.493 41.667 0.00 0.00 0.00 3.36
7801 10144 3.563808 TCACATGTCGTTTCCTCCTTTTG 59.436 43.478 0.00 0.00 0.00 2.44
7802 10145 2.293399 ACATGTCGTTTCCTCCTTTTGC 59.707 45.455 0.00 0.00 0.00 3.68
7991 10338 3.652057 ATAGGGTGAGTTTGGTGATGG 57.348 47.619 0.00 0.00 0.00 3.51
8012 10359 2.816087 GTGTCTGGCTGTTGACATGATT 59.184 45.455 0.00 0.00 43.75 2.57
8013 10360 3.076621 TGTCTGGCTGTTGACATGATTC 58.923 45.455 0.00 0.00 38.15 2.52
8014 10361 2.421424 GTCTGGCTGTTGACATGATTCC 59.579 50.000 0.00 0.00 33.75 3.01
8049 10404 1.214589 CTCTTGCAATGGCCACTGC 59.785 57.895 31.58 31.58 40.13 4.40
8059 10414 2.673523 GCCACTGCTGACCTCCAT 59.326 61.111 0.00 0.00 33.53 3.41
8070 10425 6.071728 ACTGCTGACCTCCATTCTTTTATTTG 60.072 38.462 0.00 0.00 0.00 2.32
8083 10438 6.515272 TCTTTTATTTGATCTTCACCAGCC 57.485 37.500 0.00 0.00 0.00 4.85
8089 10444 3.258228 ATCTTCACCAGCCGCAGCA 62.258 57.895 0.00 0.00 43.56 4.41
8183 10545 4.743493 ACGTGGAAATAATGGACAAATGC 58.257 39.130 0.00 0.00 0.00 3.56
8184 10546 4.111916 CGTGGAAATAATGGACAAATGCC 58.888 43.478 0.00 0.00 0.00 4.40
8216 10578 6.250711 ACTTTATTTCCCCGTTGGATACTTT 58.749 36.000 0.00 0.00 44.66 2.66
8217 10579 6.376299 ACTTTATTTCCCCGTTGGATACTTTC 59.624 38.462 0.00 0.00 44.66 2.62
8218 10580 4.586306 ATTTCCCCGTTGGATACTTTCT 57.414 40.909 0.00 0.00 44.66 2.52
8220 10582 5.502089 TTTCCCCGTTGGATACTTTCTAA 57.498 39.130 0.00 0.00 44.66 2.10
8221 10583 4.476628 TCCCCGTTGGATACTTTCTAAC 57.523 45.455 0.00 0.00 41.16 2.34
8223 10585 4.533311 TCCCCGTTGGATACTTTCTAACTT 59.467 41.667 1.33 0.00 42.09 2.66
8224 10586 5.721000 TCCCCGTTGGATACTTTCTAACTTA 59.279 40.000 1.33 0.00 42.09 2.24
8225 10587 5.814188 CCCCGTTGGATACTTTCTAACTTAC 59.186 44.000 1.33 0.00 42.09 2.34
8226 10588 5.517770 CCCGTTGGATACTTTCTAACTTACG 59.482 44.000 0.00 0.00 42.09 3.18
8229 10591 7.201384 CCGTTGGATACTTTCTAACTTACGAAC 60.201 40.741 0.00 0.00 42.09 3.95
8293 10656 8.083462 TGTGTGTGATGTAATTAACAAGACTC 57.917 34.615 0.00 0.00 42.70 3.36
8306 10669 5.429957 AACAAGACTCTGAAGTGCAAATC 57.570 39.130 0.00 0.00 35.28 2.17
8325 10688 5.909621 AATCTGTGAACATGCTAGCATTT 57.090 34.783 27.59 22.31 33.90 2.32
8326 10689 7.252708 CAAATCTGTGAACATGCTAGCATTTA 58.747 34.615 27.59 9.42 33.90 1.40
8333 10696 8.739039 TGTGAACATGCTAGCATTTATAACTTT 58.261 29.630 27.59 4.55 33.90 2.66
8353 10717 6.993079 ACTTTGTCTATGTGTGATGTACTCA 58.007 36.000 0.00 0.00 37.22 3.41
8362 10726 9.298774 CTATGTGTGATGTACTCAGCATATATG 57.701 37.037 8.45 8.45 41.99 1.78
8395 10761 3.316308 GCAATGTGTTGATAAGCCTAGGG 59.684 47.826 11.72 0.00 37.53 3.53
8420 10786 0.321298 AATGTAGACGCGGGTGCTTT 60.321 50.000 10.96 2.19 39.65 3.51
8421 10787 0.533491 ATGTAGACGCGGGTGCTTTA 59.467 50.000 10.96 0.89 39.65 1.85
8423 10789 1.066716 TGTAGACGCGGGTGCTTTATT 60.067 47.619 10.96 0.00 39.65 1.40
8424 10790 1.591619 GTAGACGCGGGTGCTTTATTC 59.408 52.381 10.96 0.00 39.65 1.75
8425 10791 0.249398 AGACGCGGGTGCTTTATTCT 59.751 50.000 10.96 0.00 39.65 2.40
8426 10792 1.479323 AGACGCGGGTGCTTTATTCTA 59.521 47.619 10.96 0.00 39.65 2.10
8427 10793 1.859080 GACGCGGGTGCTTTATTCTAG 59.141 52.381 10.96 0.00 39.65 2.43
8428 10794 1.206371 ACGCGGGTGCTTTATTCTAGT 59.794 47.619 12.47 0.00 39.65 2.57
8429 10795 2.277084 CGCGGGTGCTTTATTCTAGTT 58.723 47.619 0.00 0.00 39.65 2.24
8430 10796 3.119029 ACGCGGGTGCTTTATTCTAGTTA 60.119 43.478 12.47 0.00 39.65 2.24
8461 10827 3.529948 TGGAGTGCCCATTTGTTGT 57.470 47.368 0.00 0.00 40.82 3.32
8466 10832 2.821969 GAGTGCCCATTTGTTGTCATCT 59.178 45.455 0.00 0.00 0.00 2.90
8473 10839 5.178067 GCCCATTTGTTGTCATCTGAAAAAG 59.822 40.000 0.00 0.00 0.00 2.27
8488 10854 9.270576 CATCTGAAAAAGTTCGTGAGATATTTG 57.729 33.333 0.00 0.00 41.60 2.32
8525 10891 2.662006 TCTCTCATCTGAAACTGGCG 57.338 50.000 0.00 0.00 0.00 5.69
8609 11019 2.286365 CCCTAGGCAGGTTTTGTTGA 57.714 50.000 2.05 0.00 40.79 3.18
8610 11020 2.807676 CCCTAGGCAGGTTTTGTTGAT 58.192 47.619 2.05 0.00 40.79 2.57
8612 11022 4.340617 CCCTAGGCAGGTTTTGTTGATAA 58.659 43.478 2.05 0.00 40.79 1.75
8613 11023 4.399303 CCCTAGGCAGGTTTTGTTGATAAG 59.601 45.833 2.05 0.00 40.79 1.73
8614 11024 5.253330 CCTAGGCAGGTTTTGTTGATAAGA 58.747 41.667 0.00 0.00 37.15 2.10
8615 11025 5.710099 CCTAGGCAGGTTTTGTTGATAAGAA 59.290 40.000 0.00 0.00 37.15 2.52
8616 11026 6.378280 CCTAGGCAGGTTTTGTTGATAAGAAT 59.622 38.462 0.00 0.00 37.15 2.40
8618 11028 5.774690 AGGCAGGTTTTGTTGATAAGAATGA 59.225 36.000 0.00 0.00 0.00 2.57
8619 11029 6.438425 AGGCAGGTTTTGTTGATAAGAATGAT 59.562 34.615 0.00 0.00 0.00 2.45
8620 11030 7.038799 AGGCAGGTTTTGTTGATAAGAATGATT 60.039 33.333 0.00 0.00 0.00 2.57
8621 11031 7.063780 GGCAGGTTTTGTTGATAAGAATGATTG 59.936 37.037 0.00 0.00 0.00 2.67
8622 11032 7.412237 GCAGGTTTTGTTGATAAGAATGATTGC 60.412 37.037 0.00 0.00 0.00 3.56
8623 11033 6.808212 AGGTTTTGTTGATAAGAATGATTGCG 59.192 34.615 0.00 0.00 0.00 4.85
8625 11035 4.898829 TGTTGATAAGAATGATTGCGGG 57.101 40.909 0.00 0.00 0.00 6.13
8629 11042 4.910195 TGATAAGAATGATTGCGGGCTAT 58.090 39.130 0.00 0.00 0.00 2.97
8634 11047 2.495155 ATGATTGCGGGCTATATGCA 57.505 45.000 0.00 0.00 45.15 3.96
8646 11059 2.291741 GCTATATGCAGTGTTTGGCCTC 59.708 50.000 3.32 0.00 42.31 4.70
8703 11116 1.202915 TCTCACCAGCCAAGATGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
8704 11117 1.201647 CTCACCAGCCAAGATGCAAAG 59.798 52.381 0.00 0.00 0.00 2.77
8705 11118 0.963962 CACCAGCCAAGATGCAAAGT 59.036 50.000 0.00 0.00 0.00 2.66
8707 11120 0.529378 CCAGCCAAGATGCAAAGTCC 59.471 55.000 0.00 0.00 0.00 3.85
8708 11121 1.250328 CAGCCAAGATGCAAAGTCCA 58.750 50.000 0.00 0.00 0.00 4.02
8709 11122 1.068055 CAGCCAAGATGCAAAGTCCAC 60.068 52.381 0.00 0.00 0.00 4.02
8710 11123 0.961019 GCCAAGATGCAAAGTCCACA 59.039 50.000 0.00 0.00 0.00 4.17
8711 11124 1.547372 GCCAAGATGCAAAGTCCACAT 59.453 47.619 0.00 0.00 0.00 3.21
8731 11167 6.111382 CACATAGGATCTTGAAGCAGAGAAA 58.889 40.000 0.00 0.00 0.00 2.52
8745 11202 6.756299 AGCAGAGAAAAAGAAGAATGATCC 57.244 37.500 0.00 0.00 0.00 3.36
8800 11257 6.365970 AGGATAACAAAAGCTCAGAAGAGA 57.634 37.500 0.00 0.00 44.98 3.10
8801 11258 6.405538 AGGATAACAAAAGCTCAGAAGAGAG 58.594 40.000 0.00 0.00 44.98 3.20
8802 11259 6.212388 AGGATAACAAAAGCTCAGAAGAGAGA 59.788 38.462 0.00 0.00 44.98 3.10
8804 11261 7.148490 GGATAACAAAAGCTCAGAAGAGAGAAC 60.148 40.741 0.00 0.00 44.98 3.01
8805 11262 5.028549 ACAAAAGCTCAGAAGAGAGAACA 57.971 39.130 0.00 0.00 44.98 3.18
8808 11265 4.888326 AAGCTCAGAAGAGAGAACACAT 57.112 40.909 0.00 0.00 44.98 3.21
8809 11266 4.888326 AGCTCAGAAGAGAGAACACATT 57.112 40.909 0.00 0.00 44.98 2.71
8810 11267 4.567971 AGCTCAGAAGAGAGAACACATTG 58.432 43.478 0.00 0.00 44.98 2.82
8811 11268 4.040217 AGCTCAGAAGAGAGAACACATTGT 59.960 41.667 0.00 0.00 44.98 2.71
8812 11269 4.388469 GCTCAGAAGAGAGAACACATTGTC 59.612 45.833 0.00 0.00 44.98 3.18
8813 11270 4.887748 TCAGAAGAGAGAACACATTGTCC 58.112 43.478 0.00 0.00 0.00 4.02
8814 11271 4.344968 TCAGAAGAGAGAACACATTGTCCA 59.655 41.667 0.00 0.00 0.00 4.02
8815 11272 4.689812 CAGAAGAGAGAACACATTGTCCAG 59.310 45.833 0.00 0.00 0.00 3.86
8822 11284 2.568623 ACACATTGTCCAGTTCCCTC 57.431 50.000 0.00 0.00 0.00 4.30
8843 11305 4.039703 TCGCGTACATAGTGCATAGAAAC 58.960 43.478 5.77 0.00 0.00 2.78
8849 11311 7.514747 GCGTACATAGTGCATAGAAACAAGTAC 60.515 40.741 0.00 0.00 0.00 2.73
8850 11312 7.701078 CGTACATAGTGCATAGAAACAAGTACT 59.299 37.037 0.00 0.00 0.00 2.73
8851 11313 9.021863 GTACATAGTGCATAGAAACAAGTACTC 57.978 37.037 0.00 0.00 0.00 2.59
8852 11314 7.042335 ACATAGTGCATAGAAACAAGTACTCC 58.958 38.462 0.00 0.00 0.00 3.85
8853 11315 4.833390 AGTGCATAGAAACAAGTACTCCC 58.167 43.478 0.00 0.00 0.00 4.30
8854 11316 4.532521 AGTGCATAGAAACAAGTACTCCCT 59.467 41.667 0.00 0.00 0.00 4.20
8855 11317 4.870991 GTGCATAGAAACAAGTACTCCCTC 59.129 45.833 0.00 0.00 0.00 4.30
8856 11318 4.081087 TGCATAGAAACAAGTACTCCCTCC 60.081 45.833 0.00 0.00 0.00 4.30
8857 11319 4.683832 CATAGAAACAAGTACTCCCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
8858 11320 2.606378 AGAAACAAGTACTCCCTCCGT 58.394 47.619 0.00 0.00 0.00 4.69
8859 11321 2.970640 AGAAACAAGTACTCCCTCCGTT 59.029 45.455 0.00 0.00 0.00 4.44
8860 11322 3.006644 AGAAACAAGTACTCCCTCCGTTC 59.993 47.826 0.00 0.00 0.00 3.95
8861 11323 1.264295 ACAAGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
8862 11324 0.172803 CAAGTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
8863 11325 0.038744 AAGTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
8864 11326 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
8865 11327 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
8866 11328 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
8867 11329 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
8868 11330 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
8869 11331 2.770232 ACTCCCTCCGTTCCGAATTATT 59.230 45.455 0.00 0.00 0.00 1.40
8870 11332 3.199289 ACTCCCTCCGTTCCGAATTATTT 59.801 43.478 0.00 0.00 0.00 1.40
8871 11333 3.537580 TCCCTCCGTTCCGAATTATTTG 58.462 45.455 0.00 0.00 0.00 2.32
8872 11334 3.054948 TCCCTCCGTTCCGAATTATTTGT 60.055 43.478 0.00 0.00 0.00 2.83
8873 11335 3.311596 CCCTCCGTTCCGAATTATTTGTC 59.688 47.826 0.00 0.00 0.00 3.18
8874 11336 3.000925 CCTCCGTTCCGAATTATTTGTCG 59.999 47.826 0.00 0.00 37.01 4.35
8875 11337 2.349275 TCCGTTCCGAATTATTTGTCGC 59.651 45.455 0.00 0.00 35.93 5.19
8876 11338 2.094575 CCGTTCCGAATTATTTGTCGCA 59.905 45.455 0.00 0.00 35.93 5.10
8877 11339 3.088552 CGTTCCGAATTATTTGTCGCAC 58.911 45.455 0.00 0.00 35.93 5.34
8878 11340 3.088552 GTTCCGAATTATTTGTCGCACG 58.911 45.455 0.00 0.00 35.93 5.34
8879 11341 2.339418 TCCGAATTATTTGTCGCACGT 58.661 42.857 0.00 0.00 35.93 4.49
8880 11342 3.509740 TCCGAATTATTTGTCGCACGTA 58.490 40.909 0.00 0.00 35.93 3.57
8881 11343 4.114073 TCCGAATTATTTGTCGCACGTAT 58.886 39.130 0.00 0.00 35.93 3.06
8882 11344 4.026393 TCCGAATTATTTGTCGCACGTATG 60.026 41.667 0.00 0.00 35.93 2.39
8883 11345 4.200827 CGAATTATTTGTCGCACGTATGG 58.799 43.478 0.00 0.00 0.00 2.74
8884 11346 4.026393 CGAATTATTTGTCGCACGTATGGA 60.026 41.667 0.00 0.00 0.00 3.41
8885 11347 5.333035 CGAATTATTTGTCGCACGTATGGAT 60.333 40.000 0.00 0.00 0.00 3.41
8886 11348 4.787381 TTATTTGTCGCACGTATGGATG 57.213 40.909 0.00 0.00 0.00 3.51
8887 11349 2.087501 TTTGTCGCACGTATGGATGT 57.912 45.000 0.00 0.00 0.00 3.06
8888 11350 2.943449 TTGTCGCACGTATGGATGTA 57.057 45.000 0.00 0.00 0.00 2.29
8889 11351 3.446310 TTGTCGCACGTATGGATGTAT 57.554 42.857 0.00 0.00 0.00 2.29
8890 11352 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
8891 11353 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
8892 11354 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
8893 11355 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
8894 11356 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
8895 11357 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
8896 11358 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
8897 11359 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
8898 11360 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
8899 11361 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
8900 11362 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
8901 11363 9.723447 CACGTATGGATGTATCTAGATGTATTC 57.277 37.037 15.79 8.60 29.44 1.75
8902 11364 9.688091 ACGTATGGATGTATCTAGATGTATTCT 57.312 33.333 15.79 2.33 38.57 2.40
8926 11388 9.434275 TCTAGTTTTAGATACATCCATTCCAGA 57.566 33.333 0.00 0.00 30.96 3.86
8927 11389 9.703892 CTAGTTTTAGATACATCCATTCCAGAG 57.296 37.037 0.00 0.00 0.00 3.35
8928 11390 8.324191 AGTTTTAGATACATCCATTCCAGAGA 57.676 34.615 0.00 0.00 0.00 3.10
8929 11391 8.207545 AGTTTTAGATACATCCATTCCAGAGAC 58.792 37.037 0.00 0.00 0.00 3.36
8930 11392 4.862902 AGATACATCCATTCCAGAGACG 57.137 45.455 0.00 0.00 0.00 4.18
8931 11393 4.474394 AGATACATCCATTCCAGAGACGA 58.526 43.478 0.00 0.00 0.00 4.20
8932 11394 4.522405 AGATACATCCATTCCAGAGACGAG 59.478 45.833 0.00 0.00 0.00 4.18
8933 11395 2.461695 ACATCCATTCCAGAGACGAGT 58.538 47.619 0.00 0.00 0.00 4.18
8934 11396 3.632333 ACATCCATTCCAGAGACGAGTA 58.368 45.455 0.00 0.00 0.00 2.59
8935 11397 4.023980 ACATCCATTCCAGAGACGAGTAA 58.976 43.478 0.00 0.00 0.00 2.24
8936 11398 4.651503 ACATCCATTCCAGAGACGAGTAAT 59.348 41.667 0.00 0.00 0.00 1.89
8937 11399 5.129485 ACATCCATTCCAGAGACGAGTAATT 59.871 40.000 0.00 0.00 0.00 1.40
8938 11400 5.677319 TCCATTCCAGAGACGAGTAATTT 57.323 39.130 0.00 0.00 0.00 1.82
8939 11401 5.419542 TCCATTCCAGAGACGAGTAATTTG 58.580 41.667 0.00 0.00 0.00 2.32
8940 11402 4.572389 CCATTCCAGAGACGAGTAATTTGG 59.428 45.833 0.00 0.00 0.00 3.28
8941 11403 5.419542 CATTCCAGAGACGAGTAATTTGGA 58.580 41.667 0.00 0.00 0.00 3.53
8942 11404 5.477607 TTCCAGAGACGAGTAATTTGGAA 57.522 39.130 8.10 8.10 40.00 3.53
8943 11405 4.817517 TCCAGAGACGAGTAATTTGGAAC 58.182 43.478 0.00 0.00 30.80 3.62
8944 11406 3.612860 CCAGAGACGAGTAATTTGGAACG 59.387 47.826 0.00 0.00 0.00 3.95
8945 11407 3.612860 CAGAGACGAGTAATTTGGAACGG 59.387 47.826 0.00 0.00 0.00 4.44
8946 11408 3.508793 AGAGACGAGTAATTTGGAACGGA 59.491 43.478 0.00 0.00 0.00 4.69
8947 11409 3.846360 AGACGAGTAATTTGGAACGGAG 58.154 45.455 0.00 0.00 0.00 4.63
8948 11410 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
8949 11411 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
8950 11412 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
8951 11413 3.618019 CGAGTAATTTGGAACGGAGGGAA 60.618 47.826 0.00 0.00 0.00 3.97
8952 11414 4.524053 GAGTAATTTGGAACGGAGGGAAT 58.476 43.478 0.00 0.00 0.00 3.01
8953 11415 5.677567 GAGTAATTTGGAACGGAGGGAATA 58.322 41.667 0.00 0.00 0.00 1.75
8954 11416 6.262056 AGTAATTTGGAACGGAGGGAATAT 57.738 37.500 0.00 0.00 0.00 1.28
8955 11417 7.383156 AGTAATTTGGAACGGAGGGAATATA 57.617 36.000 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
570 622 8.057812 TCAAAACAGATACGAATAATAGCGAC 57.942 34.615 0.00 0.00 0.00 5.19
571 623 8.637281 TTCAAAACAGATACGAATAATAGCGA 57.363 30.769 0.00 0.00 0.00 4.93
572 624 9.517361 GATTCAAAACAGATACGAATAATAGCG 57.483 33.333 0.00 0.00 0.00 4.26
620 672 9.436957 GATCGGATGTGTTACTCCAATATAAAT 57.563 33.333 0.00 0.00 0.00 1.40
621 673 8.425703 TGATCGGATGTGTTACTCCAATATAAA 58.574 33.333 0.00 0.00 0.00 1.40
622 674 7.958088 TGATCGGATGTGTTACTCCAATATAA 58.042 34.615 0.00 0.00 0.00 0.98
623 675 7.533289 TGATCGGATGTGTTACTCCAATATA 57.467 36.000 0.00 0.00 0.00 0.86
624 676 6.419484 TGATCGGATGTGTTACTCCAATAT 57.581 37.500 0.00 0.00 0.00 1.28
625 677 5.739070 GCTGATCGGATGTGTTACTCCAATA 60.739 44.000 5.48 0.00 0.00 1.90
626 678 4.697514 CTGATCGGATGTGTTACTCCAAT 58.302 43.478 0.00 0.00 0.00 3.16
627 679 3.678806 GCTGATCGGATGTGTTACTCCAA 60.679 47.826 5.48 0.00 0.00 3.53
628 680 2.159099 GCTGATCGGATGTGTTACTCCA 60.159 50.000 5.48 0.00 0.00 3.86
629 681 2.159099 TGCTGATCGGATGTGTTACTCC 60.159 50.000 5.48 0.00 0.00 3.85
630 682 3.165058 TGCTGATCGGATGTGTTACTC 57.835 47.619 5.48 0.00 0.00 2.59
631 683 3.827008 ATGCTGATCGGATGTGTTACT 57.173 42.857 5.48 0.00 0.00 2.24
632 684 4.991056 ACATATGCTGATCGGATGTGTTAC 59.009 41.667 5.48 0.00 41.69 2.50
633 685 5.213891 ACATATGCTGATCGGATGTGTTA 57.786 39.130 5.48 0.00 41.69 2.41
634 686 4.077300 ACATATGCTGATCGGATGTGTT 57.923 40.909 5.48 0.00 41.69 3.32
635 687 3.758755 ACATATGCTGATCGGATGTGT 57.241 42.857 5.48 10.14 40.12 3.72
636 688 6.148315 ACAAATACATATGCTGATCGGATGTG 59.852 38.462 14.59 13.03 38.29 3.21
637 689 6.233434 ACAAATACATATGCTGATCGGATGT 58.767 36.000 5.48 9.00 35.09 3.06
638 690 6.732531 ACAAATACATATGCTGATCGGATG 57.267 37.500 5.48 2.89 0.00 3.51
639 691 9.102757 GAATACAAATACATATGCTGATCGGAT 57.897 33.333 5.48 1.23 0.00 4.18
640 692 8.093927 TGAATACAAATACATATGCTGATCGGA 58.906 33.333 5.48 0.00 0.00 4.55
641 693 8.255394 TGAATACAAATACATATGCTGATCGG 57.745 34.615 1.58 0.00 0.00 4.18
670 722 9.834628 CTAAACAAATACGAATAGCCTGAAAAA 57.165 29.630 0.00 0.00 0.00 1.94
671 723 9.221933 TCTAAACAAATACGAATAGCCTGAAAA 57.778 29.630 0.00 0.00 0.00 2.29
672 724 8.780846 TCTAAACAAATACGAATAGCCTGAAA 57.219 30.769 0.00 0.00 0.00 2.69
673 725 8.780846 TTCTAAACAAATACGAATAGCCTGAA 57.219 30.769 0.00 0.00 0.00 3.02
674 726 8.780846 TTTCTAAACAAATACGAATAGCCTGA 57.219 30.769 0.00 0.00 0.00 3.86
675 727 9.490663 CTTTTCTAAACAAATACGAATAGCCTG 57.509 33.333 0.00 0.00 0.00 4.85
676 728 9.444600 TCTTTTCTAAACAAATACGAATAGCCT 57.555 29.630 0.00 0.00 0.00 4.58
701 753 5.048504 TGCTCTCACCACTTCAATTTTCATC 60.049 40.000 0.00 0.00 0.00 2.92
709 764 3.055819 GGATAGTGCTCTCACCACTTCAA 60.056 47.826 0.00 0.00 44.16 2.69
748 803 0.719465 GTCCGCACGAAGGTACAATG 59.281 55.000 0.00 0.00 0.00 2.82
756 811 0.863538 CTCGATCAGTCCGCACGAAG 60.864 60.000 0.00 0.00 32.85 3.79
772 827 1.523758 GGGCTTATATGTTGGGCTCG 58.476 55.000 0.00 0.00 0.00 5.03
801 892 1.375551 GAGAGGACAGAGGACTCGTC 58.624 60.000 12.59 12.59 36.40 4.20
803 894 0.034960 TGGAGAGGACAGAGGACTCG 60.035 60.000 0.00 0.00 36.40 4.18
847 941 1.211969 CTCGCGGAAAAGGAGACGA 59.788 57.895 6.13 0.00 0.00 4.20
863 975 1.590259 GGCTGCCTCGAATCGTCTC 60.590 63.158 12.43 0.00 0.00 3.36
864 976 2.496817 GGCTGCCTCGAATCGTCT 59.503 61.111 12.43 0.00 0.00 4.18
865 977 2.586357 GGGCTGCCTCGAATCGTC 60.586 66.667 19.68 0.00 0.00 4.20
866 978 4.514577 CGGGCTGCCTCGAATCGT 62.515 66.667 19.68 0.00 0.00 3.73
868 980 4.838152 TGCGGGCTGCCTCGAATC 62.838 66.667 26.39 13.48 45.60 2.52
921 1033 4.083862 GCCGGCGAGGAGGTTCTT 62.084 66.667 12.58 0.00 45.00 2.52
960 1072 4.148825 CGAGCGGAGGTGGGGAAG 62.149 72.222 0.00 0.00 39.88 3.46
1055 1167 2.558313 GGAACTCGCTGCTGTTGC 59.442 61.111 11.48 10.68 40.20 4.17
1083 1195 1.227205 GAGGCTGATGTCGCAGGAG 60.227 63.158 0.00 0.00 36.41 3.69
1213 1328 4.718961 CAAGAAAAGGGAAGGTCAGAAGA 58.281 43.478 0.00 0.00 0.00 2.87
1358 1473 9.263538 GTCTAGTAGATATACAGATCGTATGGG 57.736 40.741 15.81 0.00 41.10 4.00
1373 1488 7.235812 TCTGCAGACCATCTAGTCTAGTAGATA 59.764 40.741 13.74 0.00 45.38 1.98
1374 1489 6.043822 TCTGCAGACCATCTAGTCTAGTAGAT 59.956 42.308 13.74 2.11 45.38 1.98
1405 1520 9.426837 CACATTTAACAAAGTTCATTCATCCAT 57.573 29.630 0.00 0.00 0.00 3.41
1415 1530 6.039616 TGCAACCTCACATTTAACAAAGTTC 58.960 36.000 0.00 0.00 0.00 3.01
1433 1548 8.348507 CAGGAGAATTTATCTTAGATTGCAACC 58.651 37.037 0.00 0.00 38.96 3.77
1493 1608 5.626142 TCTGAACACCTTGGCTATTTTACA 58.374 37.500 0.00 0.00 0.00 2.41
1532 1647 7.070798 GTGCTATCTAGACATAACGTACTGAC 58.929 42.308 0.00 0.00 0.00 3.51
1539 1654 4.914504 CAGCTGTGCTATCTAGACATAACG 59.085 45.833 5.25 0.00 36.40 3.18
1569 1684 3.249080 CGTTCCATTTACTTCAACACGGT 59.751 43.478 0.00 0.00 0.00 4.83
1600 1715 6.193959 CGCATCGTAATTAGGCAAAAGTAAAC 59.806 38.462 0.14 0.00 0.00 2.01
1647 1762 2.728690 TTGCTGACACATGGAATTGC 57.271 45.000 0.00 0.00 0.00 3.56
1664 1779 5.009911 TGTTCTGAATCAACACTTCCCATTG 59.990 40.000 0.00 0.00 0.00 2.82
1711 1826 9.979578 TTTAGCTTAAAAGATTGAATTTGCAGA 57.020 25.926 0.00 0.00 0.00 4.26
1788 1904 3.562557 GCTTTCGTCACTTCCCAGTTAAA 59.437 43.478 0.00 0.00 0.00 1.52
1805 1928 3.248266 GTGCAATCACTCCAATGCTTTC 58.752 45.455 0.00 0.00 40.03 2.62
1818 1941 3.005205 ACGCTTCAGTGTGCAATCA 57.995 47.368 10.41 0.00 37.39 2.57
1862 1985 9.620259 AATGTTAAGGTATGAAATTCTCTCCTC 57.380 33.333 0.00 0.00 0.00 3.71
1895 2022 7.969536 TCTAGGAAGAAGAAATCACAAGTTG 57.030 36.000 0.00 0.00 0.00 3.16
1983 2110 6.017109 TGCTCACCTCTTATTGAAACACTTTC 60.017 38.462 0.00 0.00 40.08 2.62
1999 2127 4.773323 AAAAATGCTTACTGCTCACCTC 57.227 40.909 0.00 0.00 43.37 3.85
2000 2128 4.156739 GCTAAAAATGCTTACTGCTCACCT 59.843 41.667 0.00 0.00 43.37 4.00
2064 2193 4.164030 TGGCTGCTGTCCTCTTCAATATTA 59.836 41.667 0.00 0.00 0.00 0.98
2096 2225 5.051816 GGTTGCTACAGTACAACAGTAACA 58.948 41.667 19.25 5.76 46.31 2.41
2166 2295 3.871594 GCTAATCGCATACTTCTGGTTGT 59.128 43.478 0.00 0.00 38.92 3.32
2182 2311 4.991056 TGGCGATGTGAATAAGAGCTAATC 59.009 41.667 0.00 0.00 0.00 1.75
2187 2316 1.599542 GGTGGCGATGTGAATAAGAGC 59.400 52.381 0.00 0.00 0.00 4.09
2605 2743 1.458486 CACCTTGCCAGGGGTTGTA 59.542 57.895 8.98 0.00 46.01 2.41
3355 3499 3.105937 GTGAAGGAGAAACAACAAACGC 58.894 45.455 0.00 0.00 0.00 4.84
3369 3513 6.351711 CACATGAAGATCATAAGGTGAAGGA 58.648 40.000 0.00 0.00 40.97 3.36
3372 3516 6.065976 ACCACATGAAGATCATAAGGTGAA 57.934 37.500 0.00 0.00 39.90 3.18
3552 3696 5.012148 TCCTATTAAGCTAAGCACCTGGATC 59.988 44.000 0.00 0.00 0.00 3.36
3827 3971 2.889512 GAAACATCCCCTGGTTTCCTT 58.110 47.619 6.08 0.00 44.34 3.36
3859 4003 2.573462 TCTGCCAAGTCCTTTAGAGCAT 59.427 45.455 0.00 0.00 0.00 3.79
3953 4097 8.918202 TTCCTGCCCATTATAACATACTAAAG 57.082 34.615 0.00 0.00 0.00 1.85
3990 4134 3.055891 CCCACCTTCCAATCAATTCAACC 60.056 47.826 0.00 0.00 0.00 3.77
4007 4151 2.612721 GCCACATCAATTGTTTCCCACC 60.613 50.000 5.13 0.00 36.00 4.61
4246 4607 4.948004 TGTCTTCTAGATGTCATACCACGT 59.052 41.667 5.60 0.00 0.00 4.49
4247 4608 5.500645 TGTCTTCTAGATGTCATACCACG 57.499 43.478 5.60 0.00 0.00 4.94
4248 4609 6.699204 CACATGTCTTCTAGATGTCATACCAC 59.301 42.308 14.81 2.53 39.96 4.16
4303 4664 5.423015 AGAAGTATGTGTAAGTGATGGCAG 58.577 41.667 0.00 0.00 0.00 4.85
4399 4760 1.278127 CCCAACACAGAATAGGACGGT 59.722 52.381 0.00 0.00 0.00 4.83
4628 4996 8.308931 TCAAATGTACTAGTTACTCGGTCATTT 58.691 33.333 0.00 11.94 34.69 2.32
4634 5002 7.435488 CCAGATTCAAATGTACTAGTTACTCGG 59.565 40.741 0.00 0.00 0.00 4.63
5150 5520 4.934602 GGAAGGATAGAGCTAACATGATGC 59.065 45.833 0.00 0.01 0.00 3.91
5336 5706 4.497473 TTTCTTTTCTGCATTACCACGG 57.503 40.909 0.00 0.00 0.00 4.94
5442 5812 9.730420 TTTTTCTAGCATTGAAGAACAGTAAAC 57.270 29.630 2.42 0.00 31.62 2.01
5561 5931 2.808543 CACAACACCAGTAAGGAGAAGC 59.191 50.000 0.00 0.00 41.22 3.86
5627 5997 5.124776 CCCATTTGCCGTCTTAAATGTAAGA 59.875 40.000 0.84 0.84 42.82 2.10
5772 6142 2.779755 AAAGACGGTGATACATGCCA 57.220 45.000 0.00 0.00 0.00 4.92
5899 6899 5.512573 CATGCAATGCGTAATGTTCAAAA 57.487 34.783 0.00 0.00 37.62 2.44
5981 7147 6.942532 AGCAGAAAGTGTCACTGATTTAAA 57.057 33.333 6.18 0.00 34.07 1.52
6328 7494 5.476983 AGTCATGATATCCCTACCTTCCAA 58.523 41.667 0.00 0.00 0.00 3.53
6363 7529 6.777580 AGACCATTTGAATGACCTACAAAGTT 59.222 34.615 5.32 0.00 38.70 2.66
6521 7687 5.759059 TGGCTTCCATGATCTTCAAATACT 58.241 37.500 0.00 0.00 0.00 2.12
6522 7688 5.591877 ACTGGCTTCCATGATCTTCAAATAC 59.408 40.000 0.00 0.00 30.82 1.89
6555 7721 1.687563 ACCAGTCTTCCAAAAACCGG 58.312 50.000 0.00 0.00 0.00 5.28
6564 7730 6.485648 ACAGTGTAAAACATAACCAGTCTTCC 59.514 38.462 0.00 0.00 0.00 3.46
6643 7809 7.748683 TGATATAATCTGCGAACAAACAACAAC 59.251 33.333 0.00 0.00 0.00 3.32
6908 8074 6.494842 TGCTGAATGTACAGAAAACTGAAAC 58.505 36.000 0.33 0.00 39.94 2.78
6957 8123 7.772292 CCTCTAGATGAAAATGAATGGAGTTGA 59.228 37.037 0.00 0.00 0.00 3.18
6988 8154 2.812011 GCGGGGCACTCGAATAAATTAT 59.188 45.455 0.75 0.00 0.00 1.28
6989 8155 2.158871 AGCGGGGCACTCGAATAAATTA 60.159 45.455 0.75 0.00 0.00 1.40
7023 8189 7.895975 TTCATCACTGAACAGTAATCAAGAG 57.104 36.000 7.15 0.00 40.20 2.85
7116 8282 9.541143 TTGTTGACGCTATAAATCAGAATATCA 57.459 29.630 0.00 0.00 0.00 2.15
7136 8302 5.503634 TGAGGAGAATTCCATCTTGTTGA 57.496 39.130 0.65 0.00 46.64 3.18
7147 8314 9.171877 ACAGATTTACAAGAATGAGGAGAATTC 57.828 33.333 0.00 0.00 34.80 2.17
7151 8318 7.487822 AGACAGATTTACAAGAATGAGGAGA 57.512 36.000 0.00 0.00 0.00 3.71
7291 8458 7.322664 GGAAATCAGCAATTTGTTATTCCTCA 58.677 34.615 12.98 0.00 37.70 3.86
7394 8561 4.383770 GGATCTCGACCCAGAATAAAACCA 60.384 45.833 0.00 0.00 0.00 3.67
7524 8691 4.771590 TTCAAAGAGCTGTAGCAAATGG 57.228 40.909 6.65 0.00 45.16 3.16
7547 9889 2.660572 TCCAAAAGGCAAGTTACAGCA 58.339 42.857 2.61 0.00 0.00 4.41
7552 9894 4.262420 GGCTGAAATCCAAAAGGCAAGTTA 60.262 41.667 0.00 0.00 35.43 2.24
7583 9925 4.391216 CAGCAGTAGGACTTGAATCTTGTG 59.609 45.833 0.00 0.00 0.00 3.33
7695 10037 1.801512 GCGTTGCATTTTCCTCGGC 60.802 57.895 0.00 0.00 0.00 5.54
7709 10051 9.767228 AAAACCAATTTAATTACCTTAAGCGTT 57.233 25.926 0.00 0.00 31.12 4.84
7752 10094 1.069364 GCTGCTCTGCTCTTTGTGAAC 60.069 52.381 0.00 0.00 0.00 3.18
7773 10116 6.281405 AGGAGGAAACGACATGTGATTATAC 58.719 40.000 1.15 0.00 0.00 1.47
7801 10144 3.490759 CCTGACGATGCACACCGC 61.491 66.667 0.00 0.00 42.89 5.68
7802 10145 1.626654 GAACCTGACGATGCACACCG 61.627 60.000 0.00 0.00 0.00 4.94
7812 10155 3.003480 GGAATTTCTCCTGAACCTGACG 58.997 50.000 0.00 0.00 41.61 4.35
7991 10338 1.882912 TCATGTCAACAGCCAGACAC 58.117 50.000 0.00 0.00 46.38 3.67
8049 10404 8.517062 AGATCAAATAAAAGAATGGAGGTCAG 57.483 34.615 0.00 0.00 0.00 3.51
8059 10414 6.349280 CGGCTGGTGAAGATCAAATAAAAGAA 60.349 38.462 0.00 0.00 0.00 2.52
8070 10425 2.467826 GCTGCGGCTGGTGAAGATC 61.468 63.158 11.21 0.00 35.22 2.75
8083 10438 3.926527 TCTGTTGTTAATAGTCTGCTGCG 59.073 43.478 0.00 0.00 0.00 5.18
8089 10444 7.161404 TGCTTGACATCTGTTGTTAATAGTCT 58.839 34.615 0.00 0.00 39.18 3.24
8183 10545 3.011818 GGGGAAATAAAGTACGTGTGGG 58.988 50.000 0.00 0.00 0.00 4.61
8184 10546 2.674357 CGGGGAAATAAAGTACGTGTGG 59.326 50.000 0.00 0.00 0.00 4.17
8216 10578 6.018913 TCACAAATTTGCGTTCGTAAGTTAGA 60.019 34.615 18.12 2.35 39.48 2.10
8217 10579 6.130723 TCACAAATTTGCGTTCGTAAGTTAG 58.869 36.000 18.12 0.00 39.48 2.34
8218 10580 6.045698 TCACAAATTTGCGTTCGTAAGTTA 57.954 33.333 18.12 0.00 39.48 2.24
8220 10582 4.539509 TCACAAATTTGCGTTCGTAAGT 57.460 36.364 18.12 0.00 39.48 2.24
8221 10583 7.270365 ACATATTCACAAATTTGCGTTCGTAAG 59.730 33.333 18.12 3.99 29.76 2.34
8223 10585 6.604012 ACATATTCACAAATTTGCGTTCGTA 58.396 32.000 18.12 4.87 29.76 3.43
8224 10586 5.457140 ACATATTCACAAATTTGCGTTCGT 58.543 33.333 18.12 4.54 29.76 3.85
8225 10587 5.794945 AGACATATTCACAAATTTGCGTTCG 59.205 36.000 18.12 3.94 29.76 3.95
8226 10588 7.538678 AGAAGACATATTCACAAATTTGCGTTC 59.461 33.333 18.12 6.06 29.76 3.95
8229 10591 7.801547 AAGAAGACATATTCACAAATTTGCG 57.198 32.000 18.12 9.04 29.76 4.85
8293 10656 4.556942 TGTTCACAGATTTGCACTTCAG 57.443 40.909 0.00 0.00 0.00 3.02
8306 10669 7.923888 AGTTATAAATGCTAGCATGTTCACAG 58.076 34.615 30.19 0.00 36.68 3.66
8326 10689 9.587772 GAGTACATCACACATAGACAAAGTTAT 57.412 33.333 0.00 0.00 0.00 1.89
8333 10696 4.462483 TGCTGAGTACATCACACATAGACA 59.538 41.667 0.00 0.00 33.22 3.41
8350 10713 5.526479 GCCACCACATATCATATATGCTGAG 59.474 44.000 7.92 4.54 0.00 3.35
8353 10717 5.440207 TGCCACCACATATCATATATGCT 57.560 39.130 7.92 0.77 0.00 3.79
8362 10726 3.443329 TCAACACATTGCCACCACATATC 59.557 43.478 0.00 0.00 35.63 1.63
8402 10768 0.533491 TAAAGCACCCGCGTCTACAT 59.467 50.000 4.92 0.00 45.49 2.29
8403 10769 0.533491 ATAAAGCACCCGCGTCTACA 59.467 50.000 4.92 0.00 45.49 2.74
8404 10770 1.591619 GAATAAAGCACCCGCGTCTAC 59.408 52.381 4.92 0.00 45.49 2.59
8405 10771 1.479323 AGAATAAAGCACCCGCGTCTA 59.521 47.619 4.92 0.00 45.49 2.59
8407 10773 1.859080 CTAGAATAAAGCACCCGCGTC 59.141 52.381 4.92 0.00 45.49 5.19
8409 10775 1.935933 ACTAGAATAAAGCACCCGCG 58.064 50.000 0.00 0.00 45.49 6.46
8423 10789 9.226606 CACTCCATTGTTTGGTAAATAACTAGA 57.773 33.333 0.00 0.00 46.52 2.43
8424 10790 7.968405 GCACTCCATTGTTTGGTAAATAACTAG 59.032 37.037 0.00 0.00 46.52 2.57
8425 10791 7.094118 GGCACTCCATTGTTTGGTAAATAACTA 60.094 37.037 0.00 0.00 46.52 2.24
8426 10792 6.295067 GGCACTCCATTGTTTGGTAAATAACT 60.295 38.462 0.00 0.00 46.52 2.24
8427 10793 5.867174 GGCACTCCATTGTTTGGTAAATAAC 59.133 40.000 0.00 0.00 46.52 1.89
8428 10794 5.046950 GGGCACTCCATTGTTTGGTAAATAA 60.047 40.000 0.00 0.00 46.52 1.40
8429 10795 4.464597 GGGCACTCCATTGTTTGGTAAATA 59.535 41.667 0.00 0.00 46.52 1.40
8430 10796 3.260632 GGGCACTCCATTGTTTGGTAAAT 59.739 43.478 0.00 0.00 46.52 1.40
8444 10810 1.327303 TGACAACAAATGGGCACTCC 58.673 50.000 0.00 0.00 0.00 3.85
8451 10817 7.306167 CGAACTTTTTCAGATGACAACAAATGG 60.306 37.037 0.00 0.00 0.00 3.16
8461 10827 8.777865 AATATCTCACGAACTTTTTCAGATGA 57.222 30.769 0.00 0.00 0.00 2.92
8466 10832 7.796660 CGAACAAATATCTCACGAACTTTTTCA 59.203 33.333 0.00 0.00 0.00 2.69
8473 10839 4.326278 TCTGCGAACAAATATCTCACGAAC 59.674 41.667 0.00 0.00 0.00 3.95
8488 10854 6.212235 TGAGAGATCTTCATTATCTGCGAAC 58.788 40.000 0.00 0.00 33.82 3.95
8525 10891 2.305405 GCATGAGCCATGAGTCGAC 58.695 57.895 7.70 7.70 43.81 4.20
8574 10982 1.153229 GGGCCTACGGGTCATCAAC 60.153 63.158 0.84 0.00 39.39 3.18
8575 10983 0.031917 TAGGGCCTACGGGTCATCAA 60.032 55.000 9.81 0.00 39.39 2.57
8577 10985 1.186267 CCTAGGGCCTACGGGTCATC 61.186 65.000 9.81 0.00 39.39 2.92
8578 10986 1.152312 CCTAGGGCCTACGGGTCAT 60.152 63.158 9.81 0.00 39.39 3.06
8579 10987 2.281091 CCTAGGGCCTACGGGTCA 59.719 66.667 9.81 0.00 39.39 4.02
8592 11002 6.817765 TTCTTATCAACAAAACCTGCCTAG 57.182 37.500 0.00 0.00 0.00 3.02
8604 11014 3.066621 GCCCGCAATCATTCTTATCAACA 59.933 43.478 0.00 0.00 0.00 3.33
8605 11015 3.316308 AGCCCGCAATCATTCTTATCAAC 59.684 43.478 0.00 0.00 0.00 3.18
8607 11017 3.213206 AGCCCGCAATCATTCTTATCA 57.787 42.857 0.00 0.00 0.00 2.15
8608 11018 6.512415 GCATATAGCCCGCAATCATTCTTATC 60.512 42.308 0.00 0.00 37.23 1.75
8609 11019 5.297776 GCATATAGCCCGCAATCATTCTTAT 59.702 40.000 0.00 0.00 37.23 1.73
8610 11020 4.635765 GCATATAGCCCGCAATCATTCTTA 59.364 41.667 0.00 0.00 37.23 2.10
8612 11022 3.012518 GCATATAGCCCGCAATCATTCT 58.987 45.455 0.00 0.00 37.23 2.40
8613 11023 2.749076 TGCATATAGCCCGCAATCATTC 59.251 45.455 0.00 0.00 44.83 2.67
8614 11024 2.751259 CTGCATATAGCCCGCAATCATT 59.249 45.455 0.00 0.00 44.83 2.57
8615 11025 2.290514 ACTGCATATAGCCCGCAATCAT 60.291 45.455 0.00 0.00 44.83 2.45
8616 11026 1.072173 ACTGCATATAGCCCGCAATCA 59.928 47.619 0.00 0.00 44.83 2.57
8618 11028 1.202806 ACACTGCATATAGCCCGCAAT 60.203 47.619 0.00 0.00 44.83 3.56
8619 11029 0.180171 ACACTGCATATAGCCCGCAA 59.820 50.000 0.00 0.00 44.83 4.85
8620 11030 0.180171 AACACTGCATATAGCCCGCA 59.820 50.000 0.00 0.00 44.83 5.69
8621 11031 1.002468 CAAACACTGCATATAGCCCGC 60.002 52.381 0.00 0.00 44.83 6.13
8622 11032 1.603802 CCAAACACTGCATATAGCCCG 59.396 52.381 0.00 0.00 44.83 6.13
8623 11033 1.338020 GCCAAACACTGCATATAGCCC 59.662 52.381 0.00 0.00 44.83 5.19
8625 11035 2.291741 GAGGCCAAACACTGCATATAGC 59.708 50.000 5.01 0.00 45.96 2.97
8629 11042 2.284754 TTGAGGCCAAACACTGCATA 57.715 45.000 5.01 0.00 0.00 3.14
8634 11047 1.688197 CAACCATTGAGGCCAAACACT 59.312 47.619 5.01 0.00 43.14 3.55
8707 11120 5.273674 TCTCTGCTTCAAGATCCTATGTG 57.726 43.478 0.00 0.00 0.00 3.21
8708 11121 5.946942 TTCTCTGCTTCAAGATCCTATGT 57.053 39.130 0.00 0.00 0.00 2.29
8709 11122 7.551974 TCTTTTTCTCTGCTTCAAGATCCTATG 59.448 37.037 0.00 0.00 0.00 2.23
8710 11123 7.628234 TCTTTTTCTCTGCTTCAAGATCCTAT 58.372 34.615 0.00 0.00 0.00 2.57
8711 11124 7.009179 TCTTTTTCTCTGCTTCAAGATCCTA 57.991 36.000 0.00 0.00 0.00 2.94
8723 11159 5.448360 CCGGATCATTCTTCTTTTTCTCTGC 60.448 44.000 0.00 0.00 0.00 4.26
8731 11167 5.182001 CACTTTCACCGGATCATTCTTCTTT 59.818 40.000 9.46 0.00 0.00 2.52
8745 11202 2.058829 AACGCCAAGCACTTTCACCG 62.059 55.000 0.00 0.00 0.00 4.94
8800 11257 2.443255 AGGGAACTGGACAATGTGTTCT 59.557 45.455 12.65 0.00 41.13 3.01
8801 11258 2.814336 GAGGGAACTGGACAATGTGTTC 59.186 50.000 6.55 6.55 44.43 3.18
8802 11259 2.810400 CGAGGGAACTGGACAATGTGTT 60.810 50.000 0.00 0.00 44.43 3.32
8804 11261 1.442769 CGAGGGAACTGGACAATGTG 58.557 55.000 0.00 0.00 44.43 3.21
8805 11262 0.321653 GCGAGGGAACTGGACAATGT 60.322 55.000 0.00 0.00 44.43 2.71
8808 11265 1.180456 TACGCGAGGGAACTGGACAA 61.180 55.000 15.93 0.00 44.43 3.18
8809 11266 1.604308 TACGCGAGGGAACTGGACA 60.604 57.895 15.93 0.00 44.43 4.02
8810 11267 1.153881 GTACGCGAGGGAACTGGAC 60.154 63.158 15.93 0.00 44.43 4.02
8811 11268 0.968901 ATGTACGCGAGGGAACTGGA 60.969 55.000 15.93 0.00 44.43 3.86
8812 11269 0.742505 TATGTACGCGAGGGAACTGG 59.257 55.000 15.93 0.00 44.43 4.00
8813 11270 1.404391 ACTATGTACGCGAGGGAACTG 59.596 52.381 15.93 0.00 44.43 3.16
8815 11272 1.836383 CACTATGTACGCGAGGGAAC 58.164 55.000 15.93 3.12 0.00 3.62
8822 11284 3.794564 TGTTTCTATGCACTATGTACGCG 59.205 43.478 3.53 3.53 0.00 6.01
8857 11319 3.088552 CGTGCGACAAATAATTCGGAAC 58.911 45.455 0.00 0.00 37.32 3.62
8858 11320 2.737783 ACGTGCGACAAATAATTCGGAA 59.262 40.909 0.00 0.00 37.32 4.30
8859 11321 2.339418 ACGTGCGACAAATAATTCGGA 58.661 42.857 0.00 0.00 35.73 4.55
8860 11322 2.798834 ACGTGCGACAAATAATTCGG 57.201 45.000 0.00 0.00 35.73 4.30
8861 11323 4.026393 TCCATACGTGCGACAAATAATTCG 60.026 41.667 0.00 0.00 38.31 3.34
8862 11324 5.398176 TCCATACGTGCGACAAATAATTC 57.602 39.130 0.00 0.00 0.00 2.17
8863 11325 5.295787 ACATCCATACGTGCGACAAATAATT 59.704 36.000 0.00 0.00 0.00 1.40
8864 11326 4.814234 ACATCCATACGTGCGACAAATAAT 59.186 37.500 0.00 0.00 0.00 1.28
8865 11327 4.185394 ACATCCATACGTGCGACAAATAA 58.815 39.130 0.00 0.00 0.00 1.40
8866 11328 3.787785 ACATCCATACGTGCGACAAATA 58.212 40.909 0.00 0.00 0.00 1.40
8867 11329 2.627945 ACATCCATACGTGCGACAAAT 58.372 42.857 0.00 0.00 0.00 2.32
8868 11330 2.087501 ACATCCATACGTGCGACAAA 57.912 45.000 0.00 0.00 0.00 2.83
8869 11331 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
8870 11332 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
8871 11333 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
8872 11334 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
8873 11335 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
8874 11336 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
8875 11337 9.723447 GAATACATCTAGATACATCCATACGTG 57.277 37.037 4.54 0.00 0.00 4.49
8876 11338 9.688091 AGAATACATCTAGATACATCCATACGT 57.312 33.333 4.54 0.00 36.32 3.57
8900 11362 9.434275 TCTGGAATGGATGTATCTAAAACTAGA 57.566 33.333 0.00 0.00 0.00 2.43
8901 11363 9.703892 CTCTGGAATGGATGTATCTAAAACTAG 57.296 37.037 0.00 0.00 0.00 2.57
8902 11364 9.434275 TCTCTGGAATGGATGTATCTAAAACTA 57.566 33.333 0.00 0.00 0.00 2.24
8903 11365 8.207545 GTCTCTGGAATGGATGTATCTAAAACT 58.792 37.037 0.00 0.00 0.00 2.66
8904 11366 7.169982 CGTCTCTGGAATGGATGTATCTAAAAC 59.830 40.741 0.00 0.00 0.00 2.43
8905 11367 7.069455 TCGTCTCTGGAATGGATGTATCTAAAA 59.931 37.037 0.00 0.00 0.00 1.52
8906 11368 6.549736 TCGTCTCTGGAATGGATGTATCTAAA 59.450 38.462 0.00 0.00 0.00 1.85
8907 11369 6.068670 TCGTCTCTGGAATGGATGTATCTAA 58.931 40.000 0.00 0.00 0.00 2.10
8908 11370 5.631119 TCGTCTCTGGAATGGATGTATCTA 58.369 41.667 0.00 0.00 0.00 1.98
8909 11371 4.474394 TCGTCTCTGGAATGGATGTATCT 58.526 43.478 0.00 0.00 0.00 1.98
8910 11372 4.279671 ACTCGTCTCTGGAATGGATGTATC 59.720 45.833 0.00 0.00 0.00 2.24
8911 11373 4.219115 ACTCGTCTCTGGAATGGATGTAT 58.781 43.478 0.00 0.00 0.00 2.29
8912 11374 3.632333 ACTCGTCTCTGGAATGGATGTA 58.368 45.455 0.00 0.00 0.00 2.29
8913 11375 2.461695 ACTCGTCTCTGGAATGGATGT 58.538 47.619 0.00 0.00 0.00 3.06
8914 11376 4.655762 TTACTCGTCTCTGGAATGGATG 57.344 45.455 0.00 0.00 0.00 3.51
8915 11377 5.878406 AATTACTCGTCTCTGGAATGGAT 57.122 39.130 0.00 0.00 0.00 3.41
8916 11378 5.419542 CAAATTACTCGTCTCTGGAATGGA 58.580 41.667 0.00 0.00 0.00 3.41
8917 11379 4.572389 CCAAATTACTCGTCTCTGGAATGG 59.428 45.833 0.00 0.00 0.00 3.16
8918 11380 5.419542 TCCAAATTACTCGTCTCTGGAATG 58.580 41.667 0.00 0.00 0.00 2.67
8919 11381 5.677319 TCCAAATTACTCGTCTCTGGAAT 57.323 39.130 0.00 0.00 0.00 3.01
8920 11382 5.235516 GTTCCAAATTACTCGTCTCTGGAA 58.764 41.667 0.00 0.00 38.75 3.53
8921 11383 4.617530 CGTTCCAAATTACTCGTCTCTGGA 60.618 45.833 0.00 0.00 0.00 3.86
8922 11384 3.612860 CGTTCCAAATTACTCGTCTCTGG 59.387 47.826 0.00 0.00 0.00 3.86
8923 11385 3.612860 CCGTTCCAAATTACTCGTCTCTG 59.387 47.826 0.00 0.00 0.00 3.35
8924 11386 3.508793 TCCGTTCCAAATTACTCGTCTCT 59.491 43.478 0.00 0.00 0.00 3.10
8925 11387 3.841643 TCCGTTCCAAATTACTCGTCTC 58.158 45.455 0.00 0.00 0.00 3.36
8926 11388 3.368116 CCTCCGTTCCAAATTACTCGTCT 60.368 47.826 0.00 0.00 0.00 4.18
8927 11389 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
8928 11390 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
8929 11391 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
8930 11392 3.622166 TCCCTCCGTTCCAAATTACTC 57.378 47.619 0.00 0.00 0.00 2.59
8931 11393 4.586306 ATTCCCTCCGTTCCAAATTACT 57.414 40.909 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.