Multiple sequence alignment - TraesCS5B01G061400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G061400 chr5B 100.000 3729 0 0 1 3729 68842912 68846640 0.000000e+00 6887.0
1 TraesCS5B01G061400 chr5B 93.696 2792 63 31 985 3722 68377473 68380205 0.000000e+00 4076.0
2 TraesCS5B01G061400 chr5B 100.000 155 0 0 190 344 68842946 68843100 1.690000e-73 287.0
3 TraesCS5B01G061400 chr5B 100.000 155 0 0 35 189 68843101 68843255 1.690000e-73 287.0
4 TraesCS5B01G061400 chr5B 90.306 196 16 3 200 394 68376960 68377153 1.720000e-63 254.0
5 TraesCS5B01G061400 chr5B 94.521 146 6 2 45 189 68376960 68377104 1.350000e-54 224.0
6 TraesCS5B01G061400 chr5B 95.876 97 3 1 406 501 68377376 68377472 4.990000e-34 156.0
7 TraesCS5B01G061400 chr5D 92.021 2820 110 42 979 3729 62108331 62105558 0.000000e+00 3855.0
8 TraesCS5B01G061400 chr5A 94.444 1674 72 13 1100 2758 51899675 51898008 0.000000e+00 2556.0
9 TraesCS5B01G061400 chr5A 89.545 440 19 10 3246 3661 51898013 51897577 1.970000e-147 532.0
10 TraesCS5B01G061400 chrUn 73.004 689 146 30 1185 1839 295941902 295941220 4.880000e-49 206.0
11 TraesCS5B01G061400 chr3B 73.004 689 146 30 1185 1839 728486636 728485954 4.880000e-49 206.0
12 TraesCS5B01G061400 chr3B 86.538 104 14 0 1735 1838 728258922 728258819 8.460000e-22 115.0
13 TraesCS5B01G061400 chr3D 72.569 689 149 30 1185 1839 549046395 549045713 4.920000e-44 189.0
14 TraesCS5B01G061400 chr3A 71.387 685 155 26 1192 1839 686260978 686260298 1.400000e-29 141.0
15 TraesCS5B01G061400 chr2B 82.000 100 18 0 1740 1839 781198685 781198784 6.640000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G061400 chr5B 68842912 68846640 3728 False 2487.0 6887 100.00000 1 3729 3 chr5B.!!$F2 3728
1 TraesCS5B01G061400 chr5B 68376960 68380205 3245 False 1177.5 4076 93.59975 45 3722 4 chr5B.!!$F1 3677
2 TraesCS5B01G061400 chr5D 62105558 62108331 2773 True 3855.0 3855 92.02100 979 3729 1 chr5D.!!$R1 2750
3 TraesCS5B01G061400 chr5A 51897577 51899675 2098 True 1544.0 2556 91.99450 1100 3661 2 chr5A.!!$R1 2561
4 TraesCS5B01G061400 chrUn 295941220 295941902 682 True 206.0 206 73.00400 1185 1839 1 chrUn.!!$R1 654
5 TraesCS5B01G061400 chr3B 728485954 728486636 682 True 206.0 206 73.00400 1185 1839 1 chr3B.!!$R2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 959 0.036388 TCTTCACCGACCATTGAGGC 60.036 55.0 0.00 0.0 43.14 4.70 F
947 1161 0.039798 ACTAATCGCACACGTGACGT 60.040 50.0 25.01 4.1 42.36 4.34 F
1127 1343 0.321564 CGGACATGGCTGTTTCCTCA 60.322 55.0 0.00 0.0 35.14 3.86 F
1909 2177 0.692419 AACTGGGATCGCCTCCTCAT 60.692 55.0 7.38 0.0 44.28 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 2530 0.846015 TCCATGCTTAGGATGGGGTG 59.154 55.000 28.11 7.08 40.84 4.61 R
2353 2630 1.040646 TCCTCGCAGTGTTGACTTCT 58.959 50.000 0.00 0.00 0.00 2.85 R
2502 2782 4.641541 GCATGGCATTCATACATATAGGCA 59.358 41.667 0.00 0.00 34.12 4.75 R
3573 3898 0.615331 TCCAAGGTCACATCCAGCTC 59.385 55.000 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.399714 TAGGCAGACGACCTACATGG 58.600 55.000 0.00 0.00 38.81 3.66
31 32 1.626686 CCTACATGGTTGGTTTGCCA 58.373 50.000 0.00 0.00 44.38 4.92
32 33 1.545582 CCTACATGGTTGGTTTGCCAG 59.454 52.381 0.00 0.00 46.91 4.85
33 34 0.965439 TACATGGTTGGTTTGCCAGC 59.035 50.000 0.00 0.00 46.91 4.85
37 38 3.470433 GTTGGTTTGCCAGCCCAT 58.530 55.556 0.00 0.00 46.91 4.00
38 39 1.754107 GTTGGTTTGCCAGCCCATT 59.246 52.632 0.00 0.00 46.91 3.16
39 40 0.603439 GTTGGTTTGCCAGCCCATTG 60.603 55.000 0.00 0.00 46.91 2.82
40 41 2.046988 GGTTTGCCAGCCCATTGC 60.047 61.111 0.00 0.00 41.71 3.56
74 75 1.247567 CCTGGTGTCAAATGGTCCAC 58.752 55.000 0.00 0.00 0.00 4.02
75 76 1.247567 CTGGTGTCAAATGGTCCACC 58.752 55.000 0.00 0.00 46.04 4.61
87 88 3.644966 TGGTCCACCAATACTCCATTC 57.355 47.619 0.00 0.00 44.35 2.67
88 89 3.189606 TGGTCCACCAATACTCCATTCT 58.810 45.455 0.00 0.00 44.35 2.40
89 90 4.367166 TGGTCCACCAATACTCCATTCTA 58.633 43.478 0.00 0.00 44.35 2.10
90 91 4.785914 TGGTCCACCAATACTCCATTCTAA 59.214 41.667 0.00 0.00 44.35 2.10
91 92 5.431731 TGGTCCACCAATACTCCATTCTAAT 59.568 40.000 0.00 0.00 44.35 1.73
92 93 5.765182 GGTCCACCAATACTCCATTCTAATG 59.235 44.000 0.00 0.00 35.64 1.90
93 94 6.409234 GGTCCACCAATACTCCATTCTAATGA 60.409 42.308 4.25 0.00 35.77 2.57
94 95 7.054124 GTCCACCAATACTCCATTCTAATGAA 58.946 38.462 4.25 0.00 38.70 2.57
95 96 7.721399 GTCCACCAATACTCCATTCTAATGAAT 59.279 37.037 4.25 0.00 43.10 2.57
96 97 8.944138 TCCACCAATACTCCATTCTAATGAATA 58.056 33.333 4.25 0.00 40.61 1.75
97 98 9.573166 CCACCAATACTCCATTCTAATGAATAA 57.427 33.333 4.25 0.00 40.61 1.40
99 100 9.289782 ACCAATACTCCATTCTAATGAATAAGC 57.710 33.333 4.25 0.00 40.61 3.09
100 101 9.512588 CCAATACTCCATTCTAATGAATAAGCT 57.487 33.333 4.25 0.00 40.61 3.74
103 104 9.717942 ATACTCCATTCTAATGAATAAGCTGTC 57.282 33.333 4.25 0.00 40.61 3.51
104 105 6.995091 ACTCCATTCTAATGAATAAGCTGTCC 59.005 38.462 4.25 0.00 40.61 4.02
105 106 7.141758 TCCATTCTAATGAATAAGCTGTCCT 57.858 36.000 4.25 0.00 40.61 3.85
106 107 7.220030 TCCATTCTAATGAATAAGCTGTCCTC 58.780 38.462 4.25 0.00 40.61 3.71
107 108 6.146837 CCATTCTAATGAATAAGCTGTCCTCG 59.853 42.308 4.25 0.00 40.61 4.63
108 109 5.201713 TCTAATGAATAAGCTGTCCTCGG 57.798 43.478 0.00 0.00 0.00 4.63
109 110 3.914426 AATGAATAAGCTGTCCTCGGT 57.086 42.857 0.00 0.00 0.00 4.69
110 111 2.961526 TGAATAAGCTGTCCTCGGTC 57.038 50.000 0.00 0.00 0.00 4.79
111 112 2.457598 TGAATAAGCTGTCCTCGGTCT 58.542 47.619 0.00 0.00 0.00 3.85
112 113 2.832129 TGAATAAGCTGTCCTCGGTCTT 59.168 45.455 0.00 0.00 0.00 3.01
113 114 3.119101 TGAATAAGCTGTCCTCGGTCTTC 60.119 47.826 0.00 0.00 0.00 2.87
114 115 2.217510 TAAGCTGTCCTCGGTCTTCT 57.782 50.000 0.00 0.00 0.00 2.85
115 116 0.605589 AAGCTGTCCTCGGTCTTCTG 59.394 55.000 0.00 0.00 0.00 3.02
116 117 0.540830 AGCTGTCCTCGGTCTTCTGT 60.541 55.000 0.00 0.00 0.00 3.41
117 118 0.389166 GCTGTCCTCGGTCTTCTGTG 60.389 60.000 0.00 0.00 0.00 3.66
118 119 0.962489 CTGTCCTCGGTCTTCTGTGT 59.038 55.000 0.00 0.00 0.00 3.72
119 120 1.341531 CTGTCCTCGGTCTTCTGTGTT 59.658 52.381 0.00 0.00 0.00 3.32
120 121 1.760613 TGTCCTCGGTCTTCTGTGTTT 59.239 47.619 0.00 0.00 0.00 2.83
121 122 2.960384 TGTCCTCGGTCTTCTGTGTTTA 59.040 45.455 0.00 0.00 0.00 2.01
122 123 3.576982 TGTCCTCGGTCTTCTGTGTTTAT 59.423 43.478 0.00 0.00 0.00 1.40
123 124 4.768448 TGTCCTCGGTCTTCTGTGTTTATA 59.232 41.667 0.00 0.00 0.00 0.98
124 125 5.244402 TGTCCTCGGTCTTCTGTGTTTATAA 59.756 40.000 0.00 0.00 0.00 0.98
125 126 6.161381 GTCCTCGGTCTTCTGTGTTTATAAA 58.839 40.000 0.00 0.00 0.00 1.40
126 127 6.817140 GTCCTCGGTCTTCTGTGTTTATAAAT 59.183 38.462 0.31 0.00 0.00 1.40
127 128 6.816640 TCCTCGGTCTTCTGTGTTTATAAATG 59.183 38.462 0.31 0.00 0.00 2.32
128 129 6.594159 CCTCGGTCTTCTGTGTTTATAAATGT 59.406 38.462 0.31 0.00 0.00 2.71
129 130 7.119262 CCTCGGTCTTCTGTGTTTATAAATGTT 59.881 37.037 0.31 0.00 0.00 2.71
130 131 7.802738 TCGGTCTTCTGTGTTTATAAATGTTG 58.197 34.615 0.31 0.00 0.00 3.33
131 132 7.442969 TCGGTCTTCTGTGTTTATAAATGTTGT 59.557 33.333 0.31 0.00 0.00 3.32
132 133 8.073768 CGGTCTTCTGTGTTTATAAATGTTGTT 58.926 33.333 0.31 0.00 0.00 2.83
133 134 9.180678 GGTCTTCTGTGTTTATAAATGTTGTTG 57.819 33.333 0.31 0.00 0.00 3.33
134 135 9.180678 GTCTTCTGTGTTTATAAATGTTGTTGG 57.819 33.333 0.31 0.00 0.00 3.77
135 136 8.908903 TCTTCTGTGTTTATAAATGTTGTTGGT 58.091 29.630 0.31 0.00 0.00 3.67
195 196 8.256611 ACGAATATAATGATACTGACCATTGC 57.743 34.615 0.00 0.00 35.02 3.56
196 197 7.063426 ACGAATATAATGATACTGACCATTGCG 59.937 37.037 0.00 0.00 35.02 4.85
197 198 7.063426 CGAATATAATGATACTGACCATTGCGT 59.937 37.037 0.00 0.00 35.02 5.24
198 199 8.621532 AATATAATGATACTGACCATTGCGTT 57.378 30.769 0.00 0.00 35.02 4.84
199 200 6.942532 ATAATGATACTGACCATTGCGTTT 57.057 33.333 0.00 0.00 35.02 3.60
200 201 5.643379 AATGATACTGACCATTGCGTTTT 57.357 34.783 0.00 0.00 32.34 2.43
201 202 4.678509 TGATACTGACCATTGCGTTTTC 57.321 40.909 0.00 0.00 0.00 2.29
202 203 4.068599 TGATACTGACCATTGCGTTTTCA 58.931 39.130 0.00 0.00 0.00 2.69
203 204 4.699735 TGATACTGACCATTGCGTTTTCAT 59.300 37.500 0.00 0.00 0.00 2.57
204 205 5.182950 TGATACTGACCATTGCGTTTTCATT 59.817 36.000 0.00 0.00 0.00 2.57
205 206 3.641648 ACTGACCATTGCGTTTTCATTG 58.358 40.909 0.00 0.00 0.00 2.82
206 207 3.068024 ACTGACCATTGCGTTTTCATTGT 59.932 39.130 0.00 0.00 0.00 2.71
207 208 4.050553 CTGACCATTGCGTTTTCATTGTT 58.949 39.130 0.00 0.00 0.00 2.83
208 209 3.801050 TGACCATTGCGTTTTCATTGTTG 59.199 39.130 0.00 0.00 0.00 3.33
209 210 2.543430 ACCATTGCGTTTTCATTGTTGC 59.457 40.909 0.00 0.00 0.00 4.17
210 211 2.096318 CCATTGCGTTTTCATTGTTGCC 60.096 45.455 0.00 0.00 0.00 4.52
211 212 1.576356 TTGCGTTTTCATTGTTGCCC 58.424 45.000 0.00 0.00 0.00 5.36
212 213 0.749649 TGCGTTTTCATTGTTGCCCT 59.250 45.000 0.00 0.00 0.00 5.19
213 214 1.139163 GCGTTTTCATTGTTGCCCTG 58.861 50.000 0.00 0.00 0.00 4.45
214 215 1.782044 CGTTTTCATTGTTGCCCTGG 58.218 50.000 0.00 0.00 0.00 4.45
215 216 1.068434 CGTTTTCATTGTTGCCCTGGT 59.932 47.619 0.00 0.00 0.00 4.00
216 217 2.482864 GTTTTCATTGTTGCCCTGGTG 58.517 47.619 0.00 0.00 0.00 4.17
217 218 1.786937 TTTCATTGTTGCCCTGGTGT 58.213 45.000 0.00 0.00 0.00 4.16
218 219 1.327303 TTCATTGTTGCCCTGGTGTC 58.673 50.000 0.00 0.00 0.00 3.67
219 220 0.184692 TCATTGTTGCCCTGGTGTCA 59.815 50.000 0.00 0.00 0.00 3.58
220 221 1.039068 CATTGTTGCCCTGGTGTCAA 58.961 50.000 0.00 0.00 0.00 3.18
221 222 1.411977 CATTGTTGCCCTGGTGTCAAA 59.588 47.619 0.00 0.00 0.00 2.69
222 223 1.786937 TTGTTGCCCTGGTGTCAAAT 58.213 45.000 0.00 0.00 0.00 2.32
223 224 1.039068 TGTTGCCCTGGTGTCAAATG 58.961 50.000 0.00 0.00 0.00 2.32
224 225 0.318120 GTTGCCCTGGTGTCAAATGG 59.682 55.000 0.00 0.00 0.00 3.16
225 226 0.105760 TTGCCCTGGTGTCAAATGGT 60.106 50.000 0.00 0.00 0.00 3.55
226 227 0.539438 TGCCCTGGTGTCAAATGGTC 60.539 55.000 0.00 0.00 0.00 4.02
227 228 1.250840 GCCCTGGTGTCAAATGGTCC 61.251 60.000 0.00 0.00 0.00 4.46
243 244 3.189606 TGGTCCACCAATACTCCATTCT 58.810 45.455 0.00 0.00 44.35 2.40
254 255 9.289782 ACCAATACTCCATTCTAATGAATAAGC 57.710 33.333 4.25 0.00 40.61 3.09
263 264 5.201713 TCTAATGAATAAGCTGTCCTCGG 57.798 43.478 0.00 0.00 0.00 4.63
265 266 2.961526 TGAATAAGCTGTCCTCGGTC 57.038 50.000 0.00 0.00 0.00 4.79
417 630 1.948104 TATTTGCCGCGAGTAAGCAT 58.052 45.000 8.23 0.00 36.20 3.79
505 719 2.894387 GCACATGAGCCCTCGAGC 60.894 66.667 6.99 0.00 0.00 5.03
519 733 4.537433 GAGCTCGGCCTCGGCAAT 62.537 66.667 10.51 0.00 44.11 3.56
520 734 4.845580 AGCTCGGCCTCGGCAATG 62.846 66.667 10.51 0.00 44.11 2.82
521 735 4.838152 GCTCGGCCTCGGCAATGA 62.838 66.667 10.51 3.68 44.11 2.57
522 736 2.109799 CTCGGCCTCGGCAATGAT 59.890 61.111 10.51 0.00 44.11 2.45
523 737 1.958205 CTCGGCCTCGGCAATGATC 60.958 63.158 10.51 0.00 44.11 2.92
524 738 2.974698 CGGCCTCGGCAATGATCC 60.975 66.667 10.51 0.00 44.11 3.36
525 739 2.192979 GGCCTCGGCAATGATCCA 59.807 61.111 10.51 0.00 44.11 3.41
526 740 1.228367 GGCCTCGGCAATGATCCAT 60.228 57.895 10.51 0.00 44.11 3.41
527 741 0.036732 GGCCTCGGCAATGATCCATA 59.963 55.000 10.51 0.00 44.11 2.74
528 742 1.446907 GCCTCGGCAATGATCCATAG 58.553 55.000 2.41 0.00 41.49 2.23
529 743 1.446907 CCTCGGCAATGATCCATAGC 58.553 55.000 0.00 0.00 0.00 2.97
530 744 1.073964 CTCGGCAATGATCCATAGCG 58.926 55.000 0.00 0.00 0.00 4.26
531 745 0.678950 TCGGCAATGATCCATAGCGA 59.321 50.000 0.00 0.00 0.00 4.93
532 746 0.792640 CGGCAATGATCCATAGCGAC 59.207 55.000 0.00 0.00 0.00 5.19
533 747 0.792640 GGCAATGATCCATAGCGACG 59.207 55.000 0.00 0.00 0.00 5.12
534 748 1.502231 GCAATGATCCATAGCGACGT 58.498 50.000 0.00 0.00 0.00 4.34
535 749 1.867233 GCAATGATCCATAGCGACGTT 59.133 47.619 0.00 0.00 0.00 3.99
536 750 2.348872 GCAATGATCCATAGCGACGTTG 60.349 50.000 0.00 0.00 0.00 4.10
537 751 2.154854 ATGATCCATAGCGACGTTGG 57.845 50.000 4.64 0.23 0.00 3.77
538 752 0.529773 TGATCCATAGCGACGTTGGC 60.530 55.000 4.64 4.59 0.00 4.52
539 753 1.548973 GATCCATAGCGACGTTGGCG 61.549 60.000 4.64 0.00 44.93 5.69
540 754 2.971428 ATCCATAGCGACGTTGGCGG 62.971 60.000 4.64 2.17 43.45 6.13
541 755 3.261951 CATAGCGACGTTGGCGGG 61.262 66.667 4.64 0.00 43.45 6.13
542 756 4.524318 ATAGCGACGTTGGCGGGG 62.524 66.667 4.64 0.00 43.45 5.73
547 761 4.137872 GACGTTGGCGGGGATCGA 62.138 66.667 0.00 0.00 43.45 3.59
548 762 4.143333 ACGTTGGCGGGGATCGAG 62.143 66.667 0.00 0.00 43.45 4.04
549 763 3.833645 CGTTGGCGGGGATCGAGA 61.834 66.667 0.00 0.00 42.43 4.04
550 764 2.107141 GTTGGCGGGGATCGAGAG 59.893 66.667 0.00 0.00 42.43 3.20
551 765 3.154473 TTGGCGGGGATCGAGAGG 61.154 66.667 0.00 0.00 42.43 3.69
552 766 3.672338 TTGGCGGGGATCGAGAGGA 62.672 63.158 0.00 0.00 42.43 3.71
553 767 2.838225 GGCGGGGATCGAGAGGAA 60.838 66.667 0.00 0.00 42.43 3.36
554 768 2.731374 GCGGGGATCGAGAGGAAG 59.269 66.667 0.00 0.00 42.43 3.46
555 769 2.862223 GCGGGGATCGAGAGGAAGG 61.862 68.421 0.00 0.00 42.43 3.46
556 770 1.152735 CGGGGATCGAGAGGAAGGA 60.153 63.158 0.00 0.00 42.43 3.36
557 771 0.755698 CGGGGATCGAGAGGAAGGAA 60.756 60.000 0.00 0.00 42.43 3.36
558 772 1.044611 GGGGATCGAGAGGAAGGAAG 58.955 60.000 0.00 0.00 0.00 3.46
559 773 1.411787 GGGGATCGAGAGGAAGGAAGA 60.412 57.143 0.00 0.00 0.00 2.87
560 774 1.684450 GGGATCGAGAGGAAGGAAGAC 59.316 57.143 0.00 0.00 0.00 3.01
561 775 1.335496 GGATCGAGAGGAAGGAAGACG 59.665 57.143 0.00 0.00 0.00 4.18
562 776 0.741915 ATCGAGAGGAAGGAAGACGC 59.258 55.000 0.00 0.00 0.00 5.19
563 777 1.226435 CGAGAGGAAGGAAGACGCG 60.226 63.158 3.53 3.53 0.00 6.01
564 778 1.517475 GAGAGGAAGGAAGACGCGC 60.517 63.158 5.73 0.00 0.00 6.86
565 779 2.881352 GAGGAAGGAAGACGCGCG 60.881 66.667 30.96 30.96 0.00 6.86
568 782 4.135493 GAAGGAAGACGCGCGCAC 62.135 66.667 32.58 23.99 0.00 5.34
569 783 4.961511 AAGGAAGACGCGCGCACA 62.962 61.111 32.58 0.00 0.00 4.57
572 786 3.181967 GAAGACGCGCGCACAGAT 61.182 61.111 32.58 9.39 0.00 2.90
573 787 3.411703 GAAGACGCGCGCACAGATG 62.412 63.158 32.58 16.12 0.00 2.90
585 799 0.729116 CACAGATGCTAAACGCCAGG 59.271 55.000 0.00 0.00 38.05 4.45
586 800 0.613260 ACAGATGCTAAACGCCAGGA 59.387 50.000 0.00 0.00 38.05 3.86
587 801 1.009829 CAGATGCTAAACGCCAGGAC 58.990 55.000 0.00 0.00 38.05 3.85
588 802 0.107654 AGATGCTAAACGCCAGGACC 60.108 55.000 0.00 0.00 38.05 4.46
589 803 0.392461 GATGCTAAACGCCAGGACCA 60.392 55.000 0.00 0.00 38.05 4.02
590 804 0.676782 ATGCTAAACGCCAGGACCAC 60.677 55.000 0.00 0.00 38.05 4.16
591 805 2.388232 GCTAAACGCCAGGACCACG 61.388 63.158 0.00 0.00 0.00 4.94
592 806 1.290955 CTAAACGCCAGGACCACGA 59.709 57.895 8.37 0.00 0.00 4.35
593 807 1.005867 TAAACGCCAGGACCACGAC 60.006 57.895 8.37 0.00 0.00 4.34
594 808 1.746322 TAAACGCCAGGACCACGACA 61.746 55.000 8.37 0.00 0.00 4.35
595 809 2.596553 AAACGCCAGGACCACGACAA 62.597 55.000 8.37 0.00 0.00 3.18
596 810 2.738521 CGCCAGGACCACGACAAG 60.739 66.667 0.00 0.00 0.00 3.16
597 811 3.050275 GCCAGGACCACGACAAGC 61.050 66.667 0.00 0.00 0.00 4.01
598 812 2.358737 CCAGGACCACGACAAGCC 60.359 66.667 0.00 0.00 0.00 4.35
599 813 2.358737 CAGGACCACGACAAGCCC 60.359 66.667 0.00 0.00 0.00 5.19
600 814 3.637273 AGGACCACGACAAGCCCC 61.637 66.667 0.00 0.00 0.00 5.80
618 832 2.828549 GGCCCCATCGTCGCAATT 60.829 61.111 0.00 0.00 0.00 2.32
619 833 1.525077 GGCCCCATCGTCGCAATTA 60.525 57.895 0.00 0.00 0.00 1.40
620 834 1.647084 GCCCCATCGTCGCAATTAC 59.353 57.895 0.00 0.00 0.00 1.89
621 835 0.814010 GCCCCATCGTCGCAATTACT 60.814 55.000 0.00 0.00 0.00 2.24
622 836 1.539496 GCCCCATCGTCGCAATTACTA 60.539 52.381 0.00 0.00 0.00 1.82
623 837 2.132762 CCCCATCGTCGCAATTACTAC 58.867 52.381 0.00 0.00 0.00 2.73
624 838 2.223971 CCCCATCGTCGCAATTACTACT 60.224 50.000 0.00 0.00 0.00 2.57
625 839 3.454375 CCCATCGTCGCAATTACTACTT 58.546 45.455 0.00 0.00 0.00 2.24
626 840 3.489785 CCCATCGTCGCAATTACTACTTC 59.510 47.826 0.00 0.00 0.00 3.01
627 841 3.489785 CCATCGTCGCAATTACTACTTCC 59.510 47.826 0.00 0.00 0.00 3.46
628 842 4.360563 CATCGTCGCAATTACTACTTCCT 58.639 43.478 0.00 0.00 0.00 3.36
629 843 4.025015 TCGTCGCAATTACTACTTCCTC 57.975 45.455 0.00 0.00 0.00 3.71
630 844 2.782192 CGTCGCAATTACTACTTCCTCG 59.218 50.000 0.00 0.00 0.00 4.63
631 845 3.730061 CGTCGCAATTACTACTTCCTCGT 60.730 47.826 0.00 0.00 0.00 4.18
632 846 3.790288 GTCGCAATTACTACTTCCTCGTC 59.210 47.826 0.00 0.00 0.00 4.20
633 847 2.782192 CGCAATTACTACTTCCTCGTCG 59.218 50.000 0.00 0.00 0.00 5.12
634 848 3.730061 CGCAATTACTACTTCCTCGTCGT 60.730 47.826 0.00 0.00 0.00 4.34
635 849 4.171754 GCAATTACTACTTCCTCGTCGTT 58.828 43.478 0.00 0.00 0.00 3.85
636 850 4.264849 GCAATTACTACTTCCTCGTCGTTC 59.735 45.833 0.00 0.00 0.00 3.95
637 851 3.729526 TTACTACTTCCTCGTCGTTCG 57.270 47.619 0.00 0.00 41.41 3.95
638 852 0.167689 ACTACTTCCTCGTCGTTCGC 59.832 55.000 0.00 0.00 39.67 4.70
639 853 0.447011 CTACTTCCTCGTCGTTCGCT 59.553 55.000 0.00 0.00 39.67 4.93
640 854 0.167470 TACTTCCTCGTCGTTCGCTG 59.833 55.000 0.00 0.00 39.67 5.18
641 855 2.430244 TTCCTCGTCGTTCGCTGC 60.430 61.111 0.00 0.00 39.67 5.25
642 856 2.804368 CTTCCTCGTCGTTCGCTGCT 62.804 60.000 0.00 0.00 39.67 4.24
643 857 3.175240 CCTCGTCGTTCGCTGCTG 61.175 66.667 0.00 0.00 39.67 4.41
644 858 3.175240 CTCGTCGTTCGCTGCTGG 61.175 66.667 0.00 0.00 39.67 4.85
647 861 3.482783 GTCGTTCGCTGCTGGCTC 61.483 66.667 0.00 0.00 39.13 4.70
648 862 4.742201 TCGTTCGCTGCTGGCTCC 62.742 66.667 0.00 0.00 39.13 4.70
663 877 4.631740 TCCGTGGTGGAGGCCTCA 62.632 66.667 33.29 17.15 43.74 3.86
664 878 4.394712 CCGTGGTGGAGGCCTCAC 62.395 72.222 33.29 26.09 42.00 3.51
669 883 2.930562 GTGGAGGCCTCACCAGGT 60.931 66.667 33.29 0.00 42.74 4.00
670 884 2.607750 TGGAGGCCTCACCAGGTC 60.608 66.667 33.29 15.00 46.14 3.85
676 890 2.667418 CCTCACCAGGTCAGGCTG 59.333 66.667 8.58 8.58 34.60 4.85
677 891 2.046507 CTCACCAGGTCAGGCTGC 60.047 66.667 10.34 4.94 0.00 5.25
678 892 2.527624 TCACCAGGTCAGGCTGCT 60.528 61.111 10.34 0.00 0.00 4.24
679 893 2.046507 CACCAGGTCAGGCTGCTC 60.047 66.667 10.34 5.30 0.00 4.26
680 894 3.325753 ACCAGGTCAGGCTGCTCC 61.326 66.667 10.34 14.41 0.00 4.70
681 895 3.324930 CCAGGTCAGGCTGCTCCA 61.325 66.667 23.20 0.89 37.29 3.86
682 896 2.046507 CAGGTCAGGCTGCTCCAC 60.047 66.667 23.20 12.04 37.29 4.02
683 897 3.325753 AGGTCAGGCTGCTCCACC 61.326 66.667 23.20 18.99 37.29 4.61
684 898 4.767255 GGTCAGGCTGCTCCACCG 62.767 72.222 10.34 0.00 37.29 4.94
708 922 3.680786 CTGCGACGACCAGGTGGA 61.681 66.667 8.91 0.00 38.94 4.02
709 923 3.633094 CTGCGACGACCAGGTGGAG 62.633 68.421 8.91 3.21 38.94 3.86
711 925 4.778415 CGACGACCAGGTGGAGCG 62.778 72.222 8.91 7.81 40.37 5.03
717 931 4.803426 CCAGGTGGAGCGCGTCTC 62.803 72.222 18.35 18.35 41.15 3.36
729 943 2.567049 CGTCTCCGCGGTCTTCTT 59.433 61.111 27.15 0.00 0.00 2.52
730 944 1.514443 CGTCTCCGCGGTCTTCTTC 60.514 63.158 27.15 8.85 0.00 2.87
731 945 1.585006 GTCTCCGCGGTCTTCTTCA 59.415 57.895 27.15 1.04 0.00 3.02
732 946 0.733223 GTCTCCGCGGTCTTCTTCAC 60.733 60.000 27.15 7.35 0.00 3.18
733 947 1.446272 CTCCGCGGTCTTCTTCACC 60.446 63.158 27.15 0.00 0.00 4.02
740 954 2.474410 GGTCTTCTTCACCGACCATT 57.526 50.000 0.00 0.00 45.08 3.16
741 955 2.076863 GGTCTTCTTCACCGACCATTG 58.923 52.381 0.00 0.00 45.08 2.82
742 956 2.289444 GGTCTTCTTCACCGACCATTGA 60.289 50.000 0.00 0.00 45.08 2.57
743 957 2.996621 GTCTTCTTCACCGACCATTGAG 59.003 50.000 0.00 0.00 0.00 3.02
744 958 2.028112 TCTTCTTCACCGACCATTGAGG 60.028 50.000 0.00 0.00 45.67 3.86
745 959 0.036388 TCTTCACCGACCATTGAGGC 60.036 55.000 0.00 0.00 43.14 4.70
746 960 1.002624 TTCACCGACCATTGAGGCC 60.003 57.895 0.00 0.00 43.14 5.19
747 961 1.773856 TTCACCGACCATTGAGGCCA 61.774 55.000 5.01 0.00 43.14 5.36
748 962 2.040544 CACCGACCATTGAGGCCAC 61.041 63.158 5.01 0.00 43.14 5.01
749 963 2.438434 CCGACCATTGAGGCCACC 60.438 66.667 5.01 0.00 43.14 4.61
750 964 2.819595 CGACCATTGAGGCCACCG 60.820 66.667 5.01 0.00 43.14 4.94
751 965 2.668632 GACCATTGAGGCCACCGA 59.331 61.111 5.01 0.00 43.14 4.69
752 966 1.450312 GACCATTGAGGCCACCGAG 60.450 63.158 5.01 0.00 43.14 4.63
753 967 2.825836 CCATTGAGGCCACCGAGC 60.826 66.667 5.01 0.00 0.00 5.03
754 968 2.270205 CATTGAGGCCACCGAGCT 59.730 61.111 5.01 0.00 0.00 4.09
755 969 1.817099 CATTGAGGCCACCGAGCTC 60.817 63.158 5.01 2.73 0.00 4.09
756 970 3.036429 ATTGAGGCCACCGAGCTCC 62.036 63.158 8.47 0.00 0.00 4.70
757 971 4.704103 TGAGGCCACCGAGCTCCT 62.704 66.667 8.47 0.00 0.00 3.69
758 972 4.154347 GAGGCCACCGAGCTCCTG 62.154 72.222 8.47 3.51 0.00 3.86
784 998 4.176851 GTCGTCGTCCTCCCGCTC 62.177 72.222 0.00 0.00 0.00 5.03
799 1013 4.374702 CTCGCACGCAGCAACCAC 62.375 66.667 0.00 0.00 46.13 4.16
802 1016 4.666532 GCACGCAGCAACCACGAC 62.667 66.667 0.00 0.00 44.79 4.34
803 1017 4.354212 CACGCAGCAACCACGACG 62.354 66.667 0.00 0.00 0.00 5.12
804 1018 4.578898 ACGCAGCAACCACGACGA 62.579 61.111 0.00 0.00 0.00 4.20
805 1019 3.112075 CGCAGCAACCACGACGAT 61.112 61.111 0.00 0.00 0.00 3.73
806 1020 2.476051 GCAGCAACCACGACGATG 59.524 61.111 0.00 0.00 0.00 3.84
807 1021 3.027170 GCAGCAACCACGACGATGG 62.027 63.158 0.00 8.39 46.10 3.51
813 1027 2.509336 CCACGACGATGGTCCTGC 60.509 66.667 0.00 0.00 40.17 4.85
814 1028 2.509336 CACGACGATGGTCCTGCC 60.509 66.667 0.00 0.00 40.17 4.85
815 1029 4.129737 ACGACGATGGTCCTGCCG 62.130 66.667 0.00 0.00 40.17 5.69
833 1047 4.426112 CGACCTGCAGCTCAGCGA 62.426 66.667 8.66 0.00 41.50 4.93
834 1048 2.813042 GACCTGCAGCTCAGCGAC 60.813 66.667 8.66 0.00 41.50 5.19
835 1049 3.293901 GACCTGCAGCTCAGCGACT 62.294 63.158 8.66 0.00 41.50 4.18
836 1050 1.938657 GACCTGCAGCTCAGCGACTA 61.939 60.000 8.66 0.00 41.50 2.59
837 1051 1.226916 CCTGCAGCTCAGCGACTAG 60.227 63.158 8.66 0.00 41.50 2.57
838 1052 1.226916 CTGCAGCTCAGCGACTAGG 60.227 63.158 0.00 0.00 35.78 3.02
839 1053 2.584694 GCAGCTCAGCGACTAGGC 60.585 66.667 0.00 0.00 0.00 3.93
840 1054 2.888111 CAGCTCAGCGACTAGGCA 59.112 61.111 0.00 0.00 34.64 4.75
841 1055 1.226916 CAGCTCAGCGACTAGGCAG 60.227 63.158 0.00 0.00 34.64 4.85
842 1056 2.584694 GCTCAGCGACTAGGCAGC 60.585 66.667 0.00 0.00 34.64 5.25
843 1057 3.074999 GCTCAGCGACTAGGCAGCT 62.075 63.158 8.83 8.83 42.64 4.24
844 1058 1.065600 CTCAGCGACTAGGCAGCTC 59.934 63.158 11.32 0.00 39.48 4.09
845 1059 2.105930 CAGCGACTAGGCAGCTCC 59.894 66.667 11.32 0.00 39.48 4.70
847 1061 2.105930 GCGACTAGGCAGCTCCTG 59.894 66.667 13.20 7.26 46.98 3.86
856 1070 4.298009 CAGCTCCTGCAGGTTCAG 57.702 61.111 31.58 22.40 42.74 3.02
861 1075 2.743928 CCTGCAGGTTCAGGCGTC 60.744 66.667 25.53 0.00 46.11 5.19
862 1076 2.743928 CTGCAGGTTCAGGCGTCC 60.744 66.667 5.57 0.00 0.00 4.79
863 1077 4.680237 TGCAGGTTCAGGCGTCCG 62.680 66.667 0.00 0.00 0.00 4.79
865 1079 4.760047 CAGGTTCAGGCGTCCGGG 62.760 72.222 0.00 0.00 0.00 5.73
874 1088 3.428282 GCGTCCGGGCGTGATTTT 61.428 61.111 31.38 0.00 0.00 1.82
875 1089 2.973316 GCGTCCGGGCGTGATTTTT 61.973 57.895 31.38 0.00 0.00 1.94
904 1118 5.714047 GAAAGTTATTTTCAGGCCTTCTGG 58.286 41.667 0.00 0.00 43.79 3.86
905 1119 3.701664 AGTTATTTTCAGGCCTTCTGGG 58.298 45.455 0.00 0.00 43.53 4.45
929 1143 4.208686 CCGGCCCGCAGAGAGTAC 62.209 72.222 0.00 0.00 0.00 2.73
930 1144 3.141488 CGGCCCGCAGAGAGTACT 61.141 66.667 0.00 0.00 0.00 2.73
931 1145 1.822613 CGGCCCGCAGAGAGTACTA 60.823 63.158 0.00 0.00 0.00 1.82
932 1146 1.381928 CGGCCCGCAGAGAGTACTAA 61.382 60.000 0.00 0.00 0.00 2.24
933 1147 1.041437 GGCCCGCAGAGAGTACTAAT 58.959 55.000 0.00 0.00 0.00 1.73
934 1148 1.000052 GGCCCGCAGAGAGTACTAATC 60.000 57.143 0.00 0.00 0.00 1.75
935 1149 1.335142 GCCCGCAGAGAGTACTAATCG 60.335 57.143 0.00 0.00 0.00 3.34
936 1150 1.335142 CCCGCAGAGAGTACTAATCGC 60.335 57.143 0.00 5.09 0.00 4.58
937 1151 1.333931 CCGCAGAGAGTACTAATCGCA 59.666 52.381 16.76 0.00 0.00 5.10
938 1152 2.376956 CGCAGAGAGTACTAATCGCAC 58.623 52.381 16.76 6.44 0.00 5.34
939 1153 2.223272 CGCAGAGAGTACTAATCGCACA 60.223 50.000 16.76 0.00 0.00 4.57
940 1154 3.109619 GCAGAGAGTACTAATCGCACAC 58.890 50.000 0.00 0.00 0.00 3.82
941 1155 3.355270 CAGAGAGTACTAATCGCACACG 58.645 50.000 0.00 0.00 42.01 4.49
942 1156 3.008330 AGAGAGTACTAATCGCACACGT 58.992 45.455 0.00 0.00 41.18 4.49
943 1157 3.099362 GAGAGTACTAATCGCACACGTG 58.901 50.000 15.48 15.48 41.18 4.49
944 1158 2.745821 AGAGTACTAATCGCACACGTGA 59.254 45.455 25.01 0.00 41.18 4.35
945 1159 2.844804 GAGTACTAATCGCACACGTGAC 59.155 50.000 25.01 12.89 41.18 3.67
946 1160 1.576246 GTACTAATCGCACACGTGACG 59.424 52.381 25.01 23.93 41.18 4.35
947 1161 0.039798 ACTAATCGCACACGTGACGT 60.040 50.000 25.01 4.10 42.36 4.34
948 1162 1.197492 ACTAATCGCACACGTGACGTA 59.803 47.619 25.01 14.63 38.32 3.57
949 1163 1.576246 CTAATCGCACACGTGACGTAC 59.424 52.381 25.01 2.34 38.32 3.67
950 1164 0.039798 AATCGCACACGTGACGTACT 60.040 50.000 25.01 11.42 38.32 2.73
951 1165 0.728129 ATCGCACACGTGACGTACTG 60.728 55.000 25.01 10.43 38.32 2.74
952 1166 1.369568 CGCACACGTGACGTACTGA 60.370 57.895 25.01 0.00 38.32 3.41
953 1167 1.594269 CGCACACGTGACGTACTGAC 61.594 60.000 25.01 5.07 38.32 3.51
971 1185 3.358707 GCGGCCGTGGCTACAAAA 61.359 61.111 28.70 0.00 41.60 2.44
972 1186 2.696759 GCGGCCGTGGCTACAAAAT 61.697 57.895 28.70 0.00 41.60 1.82
973 1187 1.427819 CGGCCGTGGCTACAAAATC 59.572 57.895 19.50 0.00 41.60 2.17
974 1188 1.427819 GGCCGTGGCTACAAAATCG 59.572 57.895 11.25 0.00 41.60 3.34
975 1189 1.226295 GCCGTGGCTACAAAATCGC 60.226 57.895 2.98 0.00 38.26 4.58
976 1190 1.427819 CCGTGGCTACAAAATCGCC 59.572 57.895 0.00 0.00 44.02 5.54
1077 1293 2.125350 CCTCGCCTCTGCTTGGAC 60.125 66.667 0.00 0.00 34.43 4.02
1081 1297 2.270527 GCCTCTGCTTGGACCTCC 59.729 66.667 0.00 0.00 33.53 4.30
1084 1300 1.621672 CCTCTGCTTGGACCTCCTCC 61.622 65.000 0.00 0.00 39.97 4.30
1085 1301 1.954362 CTCTGCTTGGACCTCCTCCG 61.954 65.000 0.00 0.00 43.03 4.63
1086 1302 3.672295 CTGCTTGGACCTCCTCCGC 62.672 68.421 0.00 0.00 43.03 5.54
1098 1314 3.775654 CTCCGCTTCCTCGCCCTT 61.776 66.667 0.00 0.00 0.00 3.95
1127 1343 0.321564 CGGACATGGCTGTTTCCTCA 60.322 55.000 0.00 0.00 35.14 3.86
1351 1570 3.376935 CTGGCCTCGACTTCCGCAT 62.377 63.158 3.32 0.00 38.37 4.73
1512 1749 2.146724 CCGGACCCCATATGCCTCA 61.147 63.158 0.00 0.00 0.00 3.86
1626 1885 1.482593 CGCTCATTAGGTGGGAGTTCT 59.517 52.381 0.00 0.00 0.00 3.01
1756 2024 2.338015 GGCTGTACCACGAGACGGA 61.338 63.158 0.00 0.00 38.86 4.69
1757 2025 1.582968 GCTGTACCACGAGACGGAA 59.417 57.895 0.00 0.00 0.00 4.30
1909 2177 0.692419 AACTGGGATCGCCTCCTCAT 60.692 55.000 7.38 0.00 44.28 2.90
2087 2358 3.249559 GGAAATCTCTTCATGTCATCCGC 59.750 47.826 0.00 0.00 0.00 5.54
2126 2397 0.963962 CATGGAGCATGGCAATACCC 59.036 55.000 0.00 0.00 38.11 3.69
2178 2452 8.556194 GTGACTGTGTATTTGATGTTAAAGACA 58.444 33.333 0.00 0.00 43.71 3.41
2353 2630 6.614160 CACTGATGTTTGCTATTGATGTGAA 58.386 36.000 0.00 0.00 0.00 3.18
2406 2683 6.721571 TTGATGTCAAGAAGTTCGATTACC 57.278 37.500 0.00 0.00 0.00 2.85
2504 2784 8.587952 AGTTCCTTTTATGTTTTTATGTGTGC 57.412 30.769 0.00 0.00 0.00 4.57
2683 2967 3.815401 GACTGGTTCTGTACAGCATTGTT 59.185 43.478 18.45 0.88 38.76 2.83
2730 3015 6.172630 ACAAATCCTGGCAATCCAATAAAAC 58.827 36.000 0.00 0.00 42.91 2.43
3088 3373 5.579511 GGAGAAACGGATTTCAATCTCGTTA 59.420 40.000 19.84 0.00 45.78 3.18
3093 3378 5.589192 ACGGATTTCAATCTCGTTACCTAG 58.411 41.667 9.09 0.00 38.34 3.02
3126 3411 1.137404 GGCTACTTTGCATGCCACG 59.863 57.895 16.68 4.20 44.34 4.94
3175 3466 3.433540 AAACGCCCAAAACCCGCAC 62.434 57.895 0.00 0.00 0.00 5.34
3221 3512 6.339587 GGAACCAAATGTGTTCTTATTGGA 57.660 37.500 9.63 0.00 42.46 3.53
3222 3513 6.156519 GGAACCAAATGTGTTCTTATTGGAC 58.843 40.000 9.63 3.81 42.46 4.02
3223 3514 6.239176 GGAACCAAATGTGTTCTTATTGGACA 60.239 38.462 9.63 0.00 42.46 4.02
3248 3540 2.165437 ACATGGTGTTGAGTTGCGTTTT 59.835 40.909 0.00 0.00 0.00 2.43
3332 3625 9.104965 ACTAACACGCATAATTTATCTTGCTTA 57.895 29.630 0.00 0.00 32.97 3.09
3452 3746 9.671279 TTCTCATTCAAAACATGAGCTATTCTA 57.329 29.630 0.00 0.00 45.10 2.10
3473 3767 2.299993 TTGATGCAGGTAGAAGCGAG 57.700 50.000 0.00 0.00 0.00 5.03
3474 3768 0.179100 TGATGCAGGTAGAAGCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
3475 3769 0.103937 GATGCAGGTAGAAGCGAGCT 59.896 55.000 0.00 0.00 0.00 4.09
3546 3862 4.706842 AGAACTGGCTAGGACAAAGAAA 57.293 40.909 0.85 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.399714 CCATGTAGGTCGTCTGCCTA 58.600 55.000 0.00 0.00 37.54 3.93
2 3 2.202866 CCATGTAGGTCGTCTGCCT 58.797 57.895 0.00 0.00 40.00 4.75
3 4 4.835927 CCATGTAGGTCGTCTGCC 57.164 61.111 0.00 0.00 0.00 4.85
12 13 1.626686 TGGCAAACCAACCATGTAGG 58.373 50.000 0.00 0.00 45.37 3.18
22 23 2.881528 GCAATGGGCTGGCAAACCA 61.882 57.895 11.65 11.65 46.51 3.67
23 24 2.046988 GCAATGGGCTGGCAAACC 60.047 61.111 2.88 0.41 40.25 3.27
24 25 2.432972 CGCAATGGGCTGGCAAAC 60.433 61.111 2.88 0.00 41.67 2.93
25 26 2.037620 AAACGCAATGGGCTGGCAAA 62.038 50.000 2.88 0.00 41.67 3.68
26 27 2.037620 AAAACGCAATGGGCTGGCAA 62.038 50.000 2.88 0.00 41.67 4.52
27 28 2.433231 GAAAACGCAATGGGCTGGCA 62.433 55.000 2.88 0.00 41.67 4.92
28 29 1.737735 GAAAACGCAATGGGCTGGC 60.738 57.895 0.00 0.00 41.67 4.85
29 30 0.247185 ATGAAAACGCAATGGGCTGG 59.753 50.000 0.00 0.00 41.67 4.85
30 31 1.727880 CAATGAAAACGCAATGGGCTG 59.272 47.619 0.00 0.00 41.67 4.85
31 32 1.344114 ACAATGAAAACGCAATGGGCT 59.656 42.857 0.00 0.00 41.67 5.19
32 33 1.794512 ACAATGAAAACGCAATGGGC 58.205 45.000 0.00 0.00 39.90 5.36
33 34 2.096318 GCAACAATGAAAACGCAATGGG 60.096 45.455 0.00 0.00 0.00 4.00
34 35 2.096318 GGCAACAATGAAAACGCAATGG 60.096 45.455 0.00 0.00 0.00 3.16
35 36 2.096318 GGGCAACAATGAAAACGCAATG 60.096 45.455 0.00 0.00 39.74 2.82
36 37 2.142319 GGGCAACAATGAAAACGCAAT 58.858 42.857 0.00 0.00 39.74 3.56
37 38 1.137872 AGGGCAACAATGAAAACGCAA 59.862 42.857 0.00 0.00 39.74 4.85
38 39 0.749649 AGGGCAACAATGAAAACGCA 59.250 45.000 0.00 0.00 39.74 5.24
39 40 1.139163 CAGGGCAACAATGAAAACGC 58.861 50.000 0.00 0.00 39.74 4.84
40 41 1.068434 ACCAGGGCAACAATGAAAACG 59.932 47.619 0.00 0.00 39.74 3.60
41 42 2.158971 ACACCAGGGCAACAATGAAAAC 60.159 45.455 0.00 0.00 39.74 2.43
42 43 2.102252 GACACCAGGGCAACAATGAAAA 59.898 45.455 0.00 0.00 39.74 2.29
43 44 1.686052 GACACCAGGGCAACAATGAAA 59.314 47.619 0.00 0.00 39.74 2.69
74 75 9.512588 AGCTTATTCATTAGAATGGAGTATTGG 57.487 33.333 2.52 0.00 44.03 3.16
77 78 9.717942 GACAGCTTATTCATTAGAATGGAGTAT 57.282 33.333 2.52 0.00 44.03 2.12
78 79 8.150945 GGACAGCTTATTCATTAGAATGGAGTA 58.849 37.037 2.52 0.00 44.03 2.59
79 80 6.995091 GGACAGCTTATTCATTAGAATGGAGT 59.005 38.462 2.52 0.00 44.03 3.85
80 81 7.222872 AGGACAGCTTATTCATTAGAATGGAG 58.777 38.462 2.52 1.38 44.03 3.86
81 82 7.141758 AGGACAGCTTATTCATTAGAATGGA 57.858 36.000 2.52 0.00 44.03 3.41
82 83 6.146837 CGAGGACAGCTTATTCATTAGAATGG 59.853 42.308 2.52 0.00 44.03 3.16
83 84 6.146837 CCGAGGACAGCTTATTCATTAGAATG 59.853 42.308 1.21 0.00 44.03 2.67
84 85 6.183361 ACCGAGGACAGCTTATTCATTAGAAT 60.183 38.462 0.00 0.00 45.98 2.40
85 86 5.128827 ACCGAGGACAGCTTATTCATTAGAA 59.871 40.000 0.00 0.00 38.31 2.10
86 87 4.649674 ACCGAGGACAGCTTATTCATTAGA 59.350 41.667 0.00 0.00 0.00 2.10
87 88 4.950050 ACCGAGGACAGCTTATTCATTAG 58.050 43.478 0.00 0.00 0.00 1.73
88 89 4.649674 AGACCGAGGACAGCTTATTCATTA 59.350 41.667 0.00 0.00 0.00 1.90
89 90 3.452627 AGACCGAGGACAGCTTATTCATT 59.547 43.478 0.00 0.00 0.00 2.57
90 91 3.034635 AGACCGAGGACAGCTTATTCAT 58.965 45.455 0.00 0.00 0.00 2.57
91 92 2.457598 AGACCGAGGACAGCTTATTCA 58.542 47.619 0.00 0.00 0.00 2.57
92 93 3.131400 AGAAGACCGAGGACAGCTTATTC 59.869 47.826 0.00 0.00 0.00 1.75
93 94 3.100671 AGAAGACCGAGGACAGCTTATT 58.899 45.455 0.00 0.00 0.00 1.40
94 95 2.428890 CAGAAGACCGAGGACAGCTTAT 59.571 50.000 0.00 0.00 0.00 1.73
95 96 1.819288 CAGAAGACCGAGGACAGCTTA 59.181 52.381 0.00 0.00 0.00 3.09
96 97 0.605589 CAGAAGACCGAGGACAGCTT 59.394 55.000 0.00 0.00 0.00 3.74
97 98 0.540830 ACAGAAGACCGAGGACAGCT 60.541 55.000 0.00 0.00 0.00 4.24
98 99 0.389166 CACAGAAGACCGAGGACAGC 60.389 60.000 0.00 0.00 0.00 4.40
99 100 0.962489 ACACAGAAGACCGAGGACAG 59.038 55.000 0.00 0.00 0.00 3.51
100 101 1.410004 AACACAGAAGACCGAGGACA 58.590 50.000 0.00 0.00 0.00 4.02
101 102 2.528041 AAACACAGAAGACCGAGGAC 57.472 50.000 0.00 0.00 0.00 3.85
102 103 5.988310 TTATAAACACAGAAGACCGAGGA 57.012 39.130 0.00 0.00 0.00 3.71
103 104 6.594159 ACATTTATAAACACAGAAGACCGAGG 59.406 38.462 0.00 0.00 0.00 4.63
104 105 7.596749 ACATTTATAAACACAGAAGACCGAG 57.403 36.000 0.00 0.00 0.00 4.63
105 106 7.442969 ACAACATTTATAAACACAGAAGACCGA 59.557 33.333 0.00 0.00 0.00 4.69
106 107 7.581476 ACAACATTTATAAACACAGAAGACCG 58.419 34.615 0.00 0.00 0.00 4.79
107 108 9.180678 CAACAACATTTATAAACACAGAAGACC 57.819 33.333 0.00 0.00 0.00 3.85
108 109 9.180678 CCAACAACATTTATAAACACAGAAGAC 57.819 33.333 0.00 0.00 0.00 3.01
109 110 8.908903 ACCAACAACATTTATAAACACAGAAGA 58.091 29.630 0.00 0.00 0.00 2.87
169 170 9.366216 GCAATGGTCAGTATCATTATATTCGTA 57.634 33.333 0.00 0.00 34.05 3.43
170 171 7.063426 CGCAATGGTCAGTATCATTATATTCGT 59.937 37.037 0.00 0.00 34.05 3.85
171 172 7.063426 ACGCAATGGTCAGTATCATTATATTCG 59.937 37.037 0.00 0.00 34.05 3.34
172 173 8.256611 ACGCAATGGTCAGTATCATTATATTC 57.743 34.615 0.00 0.00 34.05 1.75
173 174 8.621532 AACGCAATGGTCAGTATCATTATATT 57.378 30.769 0.00 0.00 34.05 1.28
174 175 8.621532 AAACGCAATGGTCAGTATCATTATAT 57.378 30.769 0.00 0.00 34.05 0.86
175 176 8.445275 AAAACGCAATGGTCAGTATCATTATA 57.555 30.769 0.00 0.00 34.05 0.98
176 177 6.942532 AAACGCAATGGTCAGTATCATTAT 57.057 33.333 0.00 0.00 34.05 1.28
177 178 6.372937 TGAAAACGCAATGGTCAGTATCATTA 59.627 34.615 0.00 0.00 34.05 1.90
178 179 5.182950 TGAAAACGCAATGGTCAGTATCATT 59.817 36.000 0.00 0.00 36.87 2.57
179 180 4.699735 TGAAAACGCAATGGTCAGTATCAT 59.300 37.500 0.00 0.00 0.00 2.45
180 181 4.068599 TGAAAACGCAATGGTCAGTATCA 58.931 39.130 0.00 0.00 0.00 2.15
181 182 4.678509 TGAAAACGCAATGGTCAGTATC 57.321 40.909 0.00 0.00 0.00 2.24
182 183 5.048083 ACAATGAAAACGCAATGGTCAGTAT 60.048 36.000 0.00 0.00 0.00 2.12
183 184 4.277174 ACAATGAAAACGCAATGGTCAGTA 59.723 37.500 0.00 0.00 0.00 2.74
184 185 3.068024 ACAATGAAAACGCAATGGTCAGT 59.932 39.130 0.00 0.00 0.00 3.41
185 186 3.641648 ACAATGAAAACGCAATGGTCAG 58.358 40.909 0.00 0.00 0.00 3.51
186 187 3.724508 ACAATGAAAACGCAATGGTCA 57.275 38.095 0.00 0.00 0.00 4.02
187 188 3.362888 GCAACAATGAAAACGCAATGGTC 60.363 43.478 0.00 0.00 0.00 4.02
188 189 2.543430 GCAACAATGAAAACGCAATGGT 59.457 40.909 0.00 0.00 0.00 3.55
189 190 2.096318 GGCAACAATGAAAACGCAATGG 60.096 45.455 0.00 0.00 0.00 3.16
190 191 2.096318 GGGCAACAATGAAAACGCAATG 60.096 45.455 0.00 0.00 39.74 2.82
191 192 2.142319 GGGCAACAATGAAAACGCAAT 58.858 42.857 0.00 0.00 39.74 3.56
192 193 1.137872 AGGGCAACAATGAAAACGCAA 59.862 42.857 0.00 0.00 39.74 4.85
193 194 0.749649 AGGGCAACAATGAAAACGCA 59.250 45.000 0.00 0.00 39.74 5.24
194 195 1.139163 CAGGGCAACAATGAAAACGC 58.861 50.000 0.00 0.00 39.74 4.84
195 196 1.068434 ACCAGGGCAACAATGAAAACG 59.932 47.619 0.00 0.00 39.74 3.60
196 197 2.158971 ACACCAGGGCAACAATGAAAAC 60.159 45.455 0.00 0.00 39.74 2.43
197 198 2.102252 GACACCAGGGCAACAATGAAAA 59.898 45.455 0.00 0.00 39.74 2.29
198 199 1.686052 GACACCAGGGCAACAATGAAA 59.314 47.619 0.00 0.00 39.74 2.69
199 200 1.327303 GACACCAGGGCAACAATGAA 58.673 50.000 0.00 0.00 39.74 2.57
200 201 0.184692 TGACACCAGGGCAACAATGA 59.815 50.000 0.00 0.00 39.74 2.57
201 202 1.039068 TTGACACCAGGGCAACAATG 58.961 50.000 0.00 0.00 39.74 2.82
202 203 1.786937 TTTGACACCAGGGCAACAAT 58.213 45.000 0.00 0.00 39.74 2.71
203 204 1.411977 CATTTGACACCAGGGCAACAA 59.588 47.619 0.00 0.00 39.74 2.83
204 205 1.039068 CATTTGACACCAGGGCAACA 58.961 50.000 0.00 0.00 39.74 3.33
205 206 0.318120 CCATTTGACACCAGGGCAAC 59.682 55.000 0.00 0.00 0.00 4.17
206 207 0.105760 ACCATTTGACACCAGGGCAA 60.106 50.000 0.00 0.00 0.00 4.52
207 208 0.539438 GACCATTTGACACCAGGGCA 60.539 55.000 0.00 0.00 0.00 5.36
208 209 1.250840 GGACCATTTGACACCAGGGC 61.251 60.000 0.00 0.00 0.00 5.19
209 210 0.112218 TGGACCATTTGACACCAGGG 59.888 55.000 0.00 0.00 0.00 4.45
210 211 1.247567 GTGGACCATTTGACACCAGG 58.752 55.000 0.00 0.00 0.00 4.45
214 215 4.079253 AGTATTGGTGGACCATTTGACAC 58.921 43.478 0.00 0.00 46.97 3.67
215 216 4.331968 GAGTATTGGTGGACCATTTGACA 58.668 43.478 0.00 0.00 46.97 3.58
216 217 3.694566 GGAGTATTGGTGGACCATTTGAC 59.305 47.826 0.00 0.00 46.97 3.18
217 218 3.332187 TGGAGTATTGGTGGACCATTTGA 59.668 43.478 0.00 0.00 46.97 2.69
218 219 3.696045 TGGAGTATTGGTGGACCATTTG 58.304 45.455 0.00 0.00 46.97 2.32
219 220 4.608170 ATGGAGTATTGGTGGACCATTT 57.392 40.909 0.00 0.00 46.97 2.32
220 221 4.230502 AGAATGGAGTATTGGTGGACCATT 59.769 41.667 0.00 0.00 46.97 3.16
221 222 3.788142 AGAATGGAGTATTGGTGGACCAT 59.212 43.478 0.00 0.00 46.97 3.55
222 223 3.189606 AGAATGGAGTATTGGTGGACCA 58.810 45.455 0.00 0.00 45.94 4.02
223 224 3.933861 AGAATGGAGTATTGGTGGACC 57.066 47.619 0.00 0.00 0.00 4.46
224 225 6.591935 TCATTAGAATGGAGTATTGGTGGAC 58.408 40.000 2.52 0.00 37.03 4.02
225 226 6.823286 TCATTAGAATGGAGTATTGGTGGA 57.177 37.500 2.52 0.00 37.03 4.02
226 227 9.573166 TTATTCATTAGAATGGAGTATTGGTGG 57.427 33.333 2.52 0.00 44.03 4.61
243 244 4.649674 AGACCGAGGACAGCTTATTCATTA 59.350 41.667 0.00 0.00 0.00 1.90
254 255 0.962489 ACACAGAAGACCGAGGACAG 59.038 55.000 0.00 0.00 0.00 3.51
263 264 9.180678 CCAACAACATTTATAAACACAGAAGAC 57.819 33.333 0.00 0.00 0.00 3.01
384 585 4.509970 GCGGCAAATATTTGAAATAACCCC 59.490 41.667 28.33 16.69 40.55 4.95
385 586 4.208253 CGCGGCAAATATTTGAAATAACCC 59.792 41.667 28.33 17.30 40.55 4.11
386 587 5.038033 TCGCGGCAAATATTTGAAATAACC 58.962 37.500 28.33 17.91 40.55 2.85
387 588 5.741982 ACTCGCGGCAAATATTTGAAATAAC 59.258 36.000 28.33 11.51 40.55 1.89
434 648 1.075674 CAGGCCTGCTCCTCCTCTA 60.076 63.158 22.33 0.00 33.25 2.43
502 716 4.537433 ATTGCCGAGGCCGAGCTC 62.537 66.667 12.05 2.73 41.09 4.09
503 717 4.845580 CATTGCCGAGGCCGAGCT 62.846 66.667 12.05 0.00 41.09 4.09
504 718 4.838152 TCATTGCCGAGGCCGAGC 62.838 66.667 12.05 7.65 41.09 5.03
505 719 1.958205 GATCATTGCCGAGGCCGAG 60.958 63.158 12.05 1.19 41.09 4.63
506 720 2.108976 GATCATTGCCGAGGCCGA 59.891 61.111 12.05 6.08 41.09 5.54
507 721 2.974698 GGATCATTGCCGAGGCCG 60.975 66.667 12.05 0.32 41.09 6.13
508 722 0.036732 TATGGATCATTGCCGAGGCC 59.963 55.000 12.05 0.00 41.09 5.19
509 723 1.446907 CTATGGATCATTGCCGAGGC 58.553 55.000 7.26 7.26 42.35 4.70
510 724 1.446907 GCTATGGATCATTGCCGAGG 58.553 55.000 0.00 0.00 36.81 4.63
511 725 1.073964 CGCTATGGATCATTGCCGAG 58.926 55.000 8.28 0.00 38.86 4.63
512 726 0.678950 TCGCTATGGATCATTGCCGA 59.321 50.000 8.28 6.71 38.86 5.54
513 727 0.792640 GTCGCTATGGATCATTGCCG 59.207 55.000 8.28 4.97 38.86 5.69
514 728 0.792640 CGTCGCTATGGATCATTGCC 59.207 55.000 8.28 0.00 38.86 4.52
515 729 1.502231 ACGTCGCTATGGATCATTGC 58.498 50.000 0.00 4.67 38.73 3.56
516 730 2.221749 CCAACGTCGCTATGGATCATTG 59.778 50.000 6.48 0.00 36.27 2.82
517 731 2.483876 CCAACGTCGCTATGGATCATT 58.516 47.619 6.48 0.00 36.27 2.57
518 732 1.873903 GCCAACGTCGCTATGGATCAT 60.874 52.381 14.47 0.00 36.27 2.45
519 733 0.529773 GCCAACGTCGCTATGGATCA 60.530 55.000 14.47 0.00 36.27 2.92
520 734 1.548973 CGCCAACGTCGCTATGGATC 61.549 60.000 14.47 0.00 36.27 3.36
521 735 1.591594 CGCCAACGTCGCTATGGAT 60.592 57.895 14.47 0.00 36.27 3.41
522 736 2.202690 CGCCAACGTCGCTATGGA 60.203 61.111 14.47 0.00 36.27 3.41
523 737 3.261951 CCGCCAACGTCGCTATGG 61.262 66.667 7.70 7.70 37.70 2.74
524 738 3.261951 CCCGCCAACGTCGCTATG 61.262 66.667 6.08 0.00 37.70 2.23
525 739 4.524318 CCCCGCCAACGTCGCTAT 62.524 66.667 6.08 0.00 37.70 2.97
530 744 4.137872 TCGATCCCCGCCAACGTC 62.138 66.667 0.00 0.00 37.70 4.34
531 745 4.143333 CTCGATCCCCGCCAACGT 62.143 66.667 0.00 0.00 37.70 3.99
532 746 3.774959 CTCTCGATCCCCGCCAACG 62.775 68.421 0.00 0.00 38.37 4.10
533 747 2.107141 CTCTCGATCCCCGCCAAC 59.893 66.667 0.00 0.00 38.37 3.77
534 748 3.154473 CCTCTCGATCCCCGCCAA 61.154 66.667 0.00 0.00 38.37 4.52
535 749 3.672338 TTCCTCTCGATCCCCGCCA 62.672 63.158 0.00 0.00 38.37 5.69
536 750 2.838225 TTCCTCTCGATCCCCGCC 60.838 66.667 0.00 0.00 38.37 6.13
537 751 2.731374 CTTCCTCTCGATCCCCGC 59.269 66.667 0.00 0.00 38.37 6.13
538 752 0.755698 TTCCTTCCTCTCGATCCCCG 60.756 60.000 0.00 0.00 40.25 5.73
539 753 1.044611 CTTCCTTCCTCTCGATCCCC 58.955 60.000 0.00 0.00 0.00 4.81
540 754 1.684450 GTCTTCCTTCCTCTCGATCCC 59.316 57.143 0.00 0.00 0.00 3.85
541 755 1.335496 CGTCTTCCTTCCTCTCGATCC 59.665 57.143 0.00 0.00 0.00 3.36
542 756 1.268845 GCGTCTTCCTTCCTCTCGATC 60.269 57.143 0.00 0.00 0.00 3.69
543 757 0.741915 GCGTCTTCCTTCCTCTCGAT 59.258 55.000 0.00 0.00 0.00 3.59
544 758 1.645704 CGCGTCTTCCTTCCTCTCGA 61.646 60.000 0.00 0.00 0.00 4.04
545 759 1.226435 CGCGTCTTCCTTCCTCTCG 60.226 63.158 0.00 0.00 0.00 4.04
546 760 1.517475 GCGCGTCTTCCTTCCTCTC 60.517 63.158 8.43 0.00 0.00 3.20
547 761 2.574399 GCGCGTCTTCCTTCCTCT 59.426 61.111 8.43 0.00 0.00 3.69
548 762 2.881352 CGCGCGTCTTCCTTCCTC 60.881 66.667 24.19 0.00 0.00 3.71
551 765 4.135493 GTGCGCGCGTCTTCCTTC 62.135 66.667 32.35 12.41 0.00 3.46
552 766 4.961511 TGTGCGCGCGTCTTCCTT 62.962 61.111 32.35 0.00 0.00 3.36
555 769 3.181967 ATCTGTGCGCGCGTCTTC 61.182 61.111 32.35 15.24 0.00 2.87
556 770 3.481903 CATCTGTGCGCGCGTCTT 61.482 61.111 32.35 7.10 0.00 3.01
574 788 1.012486 GTCGTGGTCCTGGCGTTTAG 61.012 60.000 0.00 0.00 0.00 1.85
575 789 1.005867 GTCGTGGTCCTGGCGTTTA 60.006 57.895 0.00 0.00 0.00 2.01
576 790 2.280592 GTCGTGGTCCTGGCGTTT 60.281 61.111 0.00 0.00 0.00 3.60
577 791 2.989055 CTTGTCGTGGTCCTGGCGTT 62.989 60.000 0.00 0.00 0.00 4.84
578 792 3.515316 CTTGTCGTGGTCCTGGCGT 62.515 63.158 0.00 0.00 0.00 5.68
579 793 2.738521 CTTGTCGTGGTCCTGGCG 60.739 66.667 0.00 0.00 0.00 5.69
580 794 3.050275 GCTTGTCGTGGTCCTGGC 61.050 66.667 0.00 0.00 0.00 4.85
581 795 2.358737 GGCTTGTCGTGGTCCTGG 60.359 66.667 0.00 0.00 0.00 4.45
582 796 2.358737 GGGCTTGTCGTGGTCCTG 60.359 66.667 0.00 0.00 0.00 3.86
583 797 3.637273 GGGGCTTGTCGTGGTCCT 61.637 66.667 0.00 0.00 0.00 3.85
601 815 1.525077 TAATTGCGACGATGGGGCC 60.525 57.895 0.00 0.00 0.00 5.80
602 816 0.814010 AGTAATTGCGACGATGGGGC 60.814 55.000 0.00 0.00 0.00 5.80
603 817 2.132762 GTAGTAATTGCGACGATGGGG 58.867 52.381 0.00 0.00 0.00 4.96
604 818 3.093717 AGTAGTAATTGCGACGATGGG 57.906 47.619 0.00 0.00 0.00 4.00
605 819 3.489785 GGAAGTAGTAATTGCGACGATGG 59.510 47.826 0.00 0.00 0.00 3.51
606 820 4.360563 AGGAAGTAGTAATTGCGACGATG 58.639 43.478 0.00 0.00 0.00 3.84
607 821 4.608951 GAGGAAGTAGTAATTGCGACGAT 58.391 43.478 0.00 0.00 0.00 3.73
608 822 3.486375 CGAGGAAGTAGTAATTGCGACGA 60.486 47.826 14.71 0.00 0.00 4.20
609 823 2.782192 CGAGGAAGTAGTAATTGCGACG 59.218 50.000 9.01 9.01 0.00 5.12
610 824 3.767278 ACGAGGAAGTAGTAATTGCGAC 58.233 45.455 0.00 0.00 0.00 5.19
611 825 3.486375 CGACGAGGAAGTAGTAATTGCGA 60.486 47.826 0.00 0.00 0.00 5.10
612 826 2.782192 CGACGAGGAAGTAGTAATTGCG 59.218 50.000 0.00 0.00 0.00 4.85
613 827 3.767278 ACGACGAGGAAGTAGTAATTGC 58.233 45.455 0.00 0.00 0.00 3.56
614 828 4.494764 CGAACGACGAGGAAGTAGTAATTG 59.505 45.833 0.00 0.00 45.77 2.32
615 829 4.656041 CGAACGACGAGGAAGTAGTAATT 58.344 43.478 0.00 0.00 45.77 1.40
616 830 3.486542 GCGAACGACGAGGAAGTAGTAAT 60.487 47.826 0.00 0.00 45.77 1.89
617 831 2.159653 GCGAACGACGAGGAAGTAGTAA 60.160 50.000 0.00 0.00 45.77 2.24
618 832 1.394917 GCGAACGACGAGGAAGTAGTA 59.605 52.381 0.00 0.00 45.77 1.82
619 833 0.167689 GCGAACGACGAGGAAGTAGT 59.832 55.000 0.00 0.00 45.77 2.73
620 834 0.447011 AGCGAACGACGAGGAAGTAG 59.553 55.000 0.00 0.00 45.77 2.57
621 835 0.167470 CAGCGAACGACGAGGAAGTA 59.833 55.000 0.00 0.00 45.77 2.24
622 836 1.081376 CAGCGAACGACGAGGAAGT 60.081 57.895 0.00 0.00 45.77 3.01
623 837 2.437343 GCAGCGAACGACGAGGAAG 61.437 63.158 0.00 0.00 45.77 3.46
624 838 2.430244 GCAGCGAACGACGAGGAA 60.430 61.111 0.00 0.00 45.77 3.36
625 839 3.362797 AGCAGCGAACGACGAGGA 61.363 61.111 0.00 0.00 45.77 3.71
626 840 3.175240 CAGCAGCGAACGACGAGG 61.175 66.667 0.00 0.00 45.77 4.63
627 841 3.175240 CCAGCAGCGAACGACGAG 61.175 66.667 0.00 0.00 45.77 4.18
646 860 4.631740 TGAGGCCTCCACCACGGA 62.632 66.667 29.95 5.60 43.61 4.69
647 861 4.394712 GTGAGGCCTCCACCACGG 62.395 72.222 29.95 0.00 0.00 4.94
652 866 2.930562 ACCTGGTGAGGCCTCCAC 60.931 66.667 29.95 24.55 44.33 4.02
653 867 2.607750 GACCTGGTGAGGCCTCCA 60.608 66.667 29.95 20.89 44.33 3.86
654 868 2.607750 TGACCTGGTGAGGCCTCC 60.608 66.667 29.95 19.99 44.33 4.30
655 869 2.664081 CCTGACCTGGTGAGGCCTC 61.664 68.421 26.78 26.78 44.33 4.70
656 870 2.608988 CCTGACCTGGTGAGGCCT 60.609 66.667 19.57 3.86 44.33 5.19
659 873 2.667418 CAGCCTGACCTGGTGAGG 59.333 66.667 25.95 25.95 46.21 3.86
660 874 2.046507 GCAGCCTGACCTGGTGAG 60.047 66.667 2.82 4.83 33.44 3.51
661 875 2.527624 AGCAGCCTGACCTGGTGA 60.528 61.111 2.82 0.00 41.59 4.02
662 876 2.046507 GAGCAGCCTGACCTGGTG 60.047 66.667 2.82 0.00 43.04 4.17
663 877 3.325753 GGAGCAGCCTGACCTGGT 61.326 66.667 0.00 0.00 45.42 4.00
664 878 3.324930 TGGAGCAGCCTGACCTGG 61.325 66.667 0.00 0.00 37.63 4.45
665 879 2.046507 GTGGAGCAGCCTGACCTG 60.047 66.667 0.00 0.00 37.63 4.00
666 880 3.325753 GGTGGAGCAGCCTGACCT 61.326 66.667 0.00 0.00 37.63 3.85
667 881 4.767255 CGGTGGAGCAGCCTGACC 62.767 72.222 0.00 0.00 37.63 4.02
691 905 3.633094 CTCCACCTGGTCGTCGCAG 62.633 68.421 0.00 0.00 36.34 5.18
692 906 3.680786 CTCCACCTGGTCGTCGCA 61.681 66.667 0.00 0.00 36.34 5.10
694 908 4.778415 CGCTCCACCTGGTCGTCG 62.778 72.222 0.00 0.00 36.34 5.12
700 914 4.803426 GAGACGCGCTCCACCTGG 62.803 72.222 5.73 0.00 37.69 4.45
713 927 0.733223 GTGAAGAAGACCGCGGAGAC 60.733 60.000 35.90 21.74 0.00 3.36
714 928 1.585006 GTGAAGAAGACCGCGGAGA 59.415 57.895 35.90 2.42 0.00 3.71
715 929 1.446272 GGTGAAGAAGACCGCGGAG 60.446 63.158 35.90 6.46 0.00 4.63
716 930 2.654877 GGTGAAGAAGACCGCGGA 59.345 61.111 35.90 2.60 0.00 5.54
722 936 2.996621 CTCAATGGTCGGTGAAGAAGAC 59.003 50.000 0.00 0.00 0.00 3.01
723 937 2.028112 CCTCAATGGTCGGTGAAGAAGA 60.028 50.000 0.00 0.00 0.00 2.87
724 938 2.350522 CCTCAATGGTCGGTGAAGAAG 58.649 52.381 0.00 0.00 0.00 2.85
725 939 1.610624 GCCTCAATGGTCGGTGAAGAA 60.611 52.381 0.00 0.00 38.35 2.52
726 940 0.036388 GCCTCAATGGTCGGTGAAGA 60.036 55.000 0.00 0.00 38.35 2.87
727 941 1.026718 GGCCTCAATGGTCGGTGAAG 61.027 60.000 0.00 0.00 38.35 3.02
728 942 1.002624 GGCCTCAATGGTCGGTGAA 60.003 57.895 0.00 0.00 38.35 3.18
729 943 2.220586 TGGCCTCAATGGTCGGTGA 61.221 57.895 3.32 0.00 45.26 4.02
730 944 2.040544 GTGGCCTCAATGGTCGGTG 61.041 63.158 3.32 0.00 45.26 4.94
731 945 2.351276 GTGGCCTCAATGGTCGGT 59.649 61.111 3.32 0.00 45.26 4.69
732 946 2.438434 GGTGGCCTCAATGGTCGG 60.438 66.667 3.32 0.00 45.26 4.79
733 947 2.819595 CGGTGGCCTCAATGGTCG 60.820 66.667 3.32 0.00 45.26 4.79
734 948 1.450312 CTCGGTGGCCTCAATGGTC 60.450 63.158 3.32 0.00 41.87 4.02
735 949 2.671070 CTCGGTGGCCTCAATGGT 59.329 61.111 3.32 0.00 38.35 3.55
736 950 2.825836 GCTCGGTGGCCTCAATGG 60.826 66.667 3.32 0.00 39.35 3.16
737 951 1.817099 GAGCTCGGTGGCCTCAATG 60.817 63.158 3.32 0.00 0.00 2.82
738 952 2.586792 GAGCTCGGTGGCCTCAAT 59.413 61.111 3.32 0.00 0.00 2.57
739 953 3.706373 GGAGCTCGGTGGCCTCAA 61.706 66.667 7.83 0.00 0.00 3.02
740 954 4.704103 AGGAGCTCGGTGGCCTCA 62.704 66.667 7.83 0.00 0.00 3.86
741 955 4.154347 CAGGAGCTCGGTGGCCTC 62.154 72.222 7.83 0.00 0.00 4.70
767 981 4.176851 GAGCGGGAGGACGACGAC 62.177 72.222 0.00 0.00 35.47 4.34
782 996 4.374702 GTGGTTGCTGCGTGCGAG 62.375 66.667 0.00 0.00 46.63 5.03
785 999 4.666532 GTCGTGGTTGCTGCGTGC 62.667 66.667 0.00 0.00 43.25 5.34
786 1000 4.354212 CGTCGTGGTTGCTGCGTG 62.354 66.667 0.00 0.00 0.00 5.34
787 1001 3.858868 ATCGTCGTGGTTGCTGCGT 62.859 57.895 0.00 0.00 0.00 5.24
788 1002 3.112075 ATCGTCGTGGTTGCTGCG 61.112 61.111 0.00 0.00 0.00 5.18
789 1003 2.476051 CATCGTCGTGGTTGCTGC 59.524 61.111 0.00 0.00 0.00 5.25
790 1004 3.168271 CCATCGTCGTGGTTGCTG 58.832 61.111 5.89 0.00 34.46 4.41
798 1012 4.129737 CGGCAGGACCATCGTCGT 62.130 66.667 0.00 0.00 40.17 4.34
816 1030 4.426112 TCGCTGAGCTGCAGGTCG 62.426 66.667 33.73 28.40 45.03 4.79
817 1031 1.938657 TAGTCGCTGAGCTGCAGGTC 61.939 60.000 33.67 33.67 45.03 3.85
818 1032 1.943116 CTAGTCGCTGAGCTGCAGGT 61.943 60.000 20.31 20.31 45.03 4.00
819 1033 1.226916 CTAGTCGCTGAGCTGCAGG 60.227 63.158 17.12 0.00 45.03 4.85
821 1035 2.888111 CCTAGTCGCTGAGCTGCA 59.112 61.111 1.78 0.00 0.00 4.41
822 1036 2.584694 GCCTAGTCGCTGAGCTGC 60.585 66.667 1.78 0.00 0.00 5.25
823 1037 1.226916 CTGCCTAGTCGCTGAGCTG 60.227 63.158 1.78 0.00 0.00 4.24
824 1038 3.074999 GCTGCCTAGTCGCTGAGCT 62.075 63.158 1.78 0.00 0.00 4.09
825 1039 2.584694 GCTGCCTAGTCGCTGAGC 60.585 66.667 0.00 0.00 0.00 4.26
826 1040 1.065600 GAGCTGCCTAGTCGCTGAG 59.934 63.158 0.00 0.00 33.47 3.35
827 1041 2.418910 GGAGCTGCCTAGTCGCTGA 61.419 63.158 0.00 0.00 33.47 4.26
828 1042 2.105930 GGAGCTGCCTAGTCGCTG 59.894 66.667 0.00 0.00 33.47 5.18
839 1053 4.298009 CTGAACCTGCAGGAGCTG 57.702 61.111 39.19 25.92 42.74 4.24
845 1059 2.743928 GGACGCCTGAACCTGCAG 60.744 66.667 6.78 6.78 35.66 4.41
846 1060 4.680237 CGGACGCCTGAACCTGCA 62.680 66.667 0.00 0.00 0.00 4.41
848 1062 4.760047 CCCGGACGCCTGAACCTG 62.760 72.222 0.73 0.00 0.00 4.00
857 1071 2.973316 AAAAATCACGCCCGGACGC 61.973 57.895 11.11 0.18 36.19 5.19
858 1072 3.259930 AAAAATCACGCCCGGACG 58.740 55.556 9.22 9.22 39.50 4.79
881 1095 5.336770 CCCAGAAGGCCTGAAAATAACTTTC 60.337 44.000 5.69 0.00 45.78 2.62
882 1096 4.528206 CCCAGAAGGCCTGAAAATAACTTT 59.472 41.667 5.69 0.00 45.78 2.66
883 1097 4.089361 CCCAGAAGGCCTGAAAATAACTT 58.911 43.478 5.69 0.00 45.78 2.66
884 1098 3.701664 CCCAGAAGGCCTGAAAATAACT 58.298 45.455 5.69 0.00 45.78 2.24
912 1126 4.208686 GTACTCTCTGCGGGCCGG 62.209 72.222 29.48 12.42 0.00 6.13
913 1127 1.381928 TTAGTACTCTCTGCGGGCCG 61.382 60.000 24.35 24.35 0.00 6.13
914 1128 1.000052 GATTAGTACTCTCTGCGGGCC 60.000 57.143 0.00 0.00 0.00 5.80
915 1129 1.335142 CGATTAGTACTCTCTGCGGGC 60.335 57.143 0.00 0.00 0.00 6.13
916 1130 1.335142 GCGATTAGTACTCTCTGCGGG 60.335 57.143 0.00 0.00 0.00 6.13
917 1131 1.333931 TGCGATTAGTACTCTCTGCGG 59.666 52.381 0.00 0.00 0.00 5.69
918 1132 2.223272 TGTGCGATTAGTACTCTCTGCG 60.223 50.000 0.00 0.00 36.37 5.18
919 1133 3.109619 GTGTGCGATTAGTACTCTCTGC 58.890 50.000 0.00 6.90 36.37 4.26
920 1134 3.181509 ACGTGTGCGATTAGTACTCTCTG 60.182 47.826 0.00 0.00 42.00 3.35
921 1135 3.008330 ACGTGTGCGATTAGTACTCTCT 58.992 45.455 0.00 0.00 42.00 3.10
922 1136 3.099362 CACGTGTGCGATTAGTACTCTC 58.901 50.000 7.58 0.00 42.00 3.20
923 1137 2.745821 TCACGTGTGCGATTAGTACTCT 59.254 45.455 16.51 0.00 42.00 3.24
924 1138 2.844804 GTCACGTGTGCGATTAGTACTC 59.155 50.000 16.51 0.00 42.00 2.59
925 1139 2.726989 CGTCACGTGTGCGATTAGTACT 60.727 50.000 23.21 0.00 42.00 2.73
926 1140 1.576246 CGTCACGTGTGCGATTAGTAC 59.424 52.381 23.21 7.78 42.00 2.73
927 1141 1.197492 ACGTCACGTGTGCGATTAGTA 59.803 47.619 30.08 2.65 39.18 1.82
928 1142 0.039798 ACGTCACGTGTGCGATTAGT 60.040 50.000 30.08 13.15 39.18 2.24
929 1143 1.576246 GTACGTCACGTGTGCGATTAG 59.424 52.381 30.08 12.51 41.39 1.73
930 1144 1.197492 AGTACGTCACGTGTGCGATTA 59.803 47.619 30.08 16.75 41.39 1.75
931 1145 0.039798 AGTACGTCACGTGTGCGATT 60.040 50.000 30.08 17.51 41.39 3.34
932 1146 0.728129 CAGTACGTCACGTGTGCGAT 60.728 55.000 30.08 20.24 41.39 4.58
933 1147 1.369568 CAGTACGTCACGTGTGCGA 60.370 57.895 30.08 17.03 41.39 5.10
934 1148 1.369568 TCAGTACGTCACGTGTGCG 60.370 57.895 24.85 24.85 41.39 5.34
935 1149 1.594269 CGTCAGTACGTCACGTGTGC 61.594 60.000 14.62 9.01 44.21 4.57
936 1150 2.406782 CGTCAGTACGTCACGTGTG 58.593 57.895 14.62 10.69 44.21 3.82
937 1151 4.907946 CGTCAGTACGTCACGTGT 57.092 55.556 14.62 0.00 44.21 4.49
954 1168 2.592623 GATTTTGTAGCCACGGCCGC 62.593 60.000 28.58 9.48 43.17 6.53
955 1169 1.427819 GATTTTGTAGCCACGGCCG 59.572 57.895 26.86 26.86 43.17 6.13
956 1170 1.427819 CGATTTTGTAGCCACGGCC 59.572 57.895 3.95 0.00 43.17 6.13
957 1171 1.226295 GCGATTTTGTAGCCACGGC 60.226 57.895 0.00 0.00 42.33 5.68
958 1172 1.427819 GGCGATTTTGTAGCCACGG 59.572 57.895 0.30 0.00 46.77 4.94
963 1177 0.885196 TGGGTTGGCGATTTTGTAGC 59.115 50.000 0.00 0.00 0.00 3.58
964 1178 3.574614 CTTTGGGTTGGCGATTTTGTAG 58.425 45.455 0.00 0.00 0.00 2.74
965 1179 2.297597 CCTTTGGGTTGGCGATTTTGTA 59.702 45.455 0.00 0.00 0.00 2.41
966 1180 1.069978 CCTTTGGGTTGGCGATTTTGT 59.930 47.619 0.00 0.00 0.00 2.83
967 1181 1.069978 ACCTTTGGGTTGGCGATTTTG 59.930 47.619 0.00 0.00 44.73 2.44
968 1182 1.069978 CACCTTTGGGTTGGCGATTTT 59.930 47.619 0.00 0.00 44.73 1.82
969 1183 0.678950 CACCTTTGGGTTGGCGATTT 59.321 50.000 0.00 0.00 44.73 2.17
970 1184 0.178975 TCACCTTTGGGTTGGCGATT 60.179 50.000 0.00 0.00 44.73 3.34
971 1185 0.178975 TTCACCTTTGGGTTGGCGAT 60.179 50.000 0.00 0.00 44.73 4.58
972 1186 1.104577 GTTCACCTTTGGGTTGGCGA 61.105 55.000 0.00 0.00 44.73 5.54
973 1187 1.362355 GTTCACCTTTGGGTTGGCG 59.638 57.895 0.00 0.00 44.73 5.69
974 1188 1.745890 GGTTCACCTTTGGGTTGGC 59.254 57.895 0.00 0.00 44.73 4.52
975 1189 2.436521 GGGTTCACCTTTGGGTTGG 58.563 57.895 0.00 0.00 44.73 3.77
1077 1293 4.214327 GCGAGGAAGCGGAGGAGG 62.214 72.222 0.00 0.00 0.00 4.30
1081 1297 3.724914 GAAGGGCGAGGAAGCGGAG 62.725 68.421 0.00 0.00 38.18 4.63
1084 1300 2.103042 CAAGAAGGGCGAGGAAGCG 61.103 63.158 0.00 0.00 38.18 4.68
1085 1301 1.021920 GTCAAGAAGGGCGAGGAAGC 61.022 60.000 0.00 0.00 0.00 3.86
1086 1302 0.737715 CGTCAAGAAGGGCGAGGAAG 60.738 60.000 0.00 0.00 0.00 3.46
1096 1312 1.350193 CATGTCCGTCCGTCAAGAAG 58.650 55.000 0.00 0.00 0.00 2.85
1097 1313 0.037697 CCATGTCCGTCCGTCAAGAA 60.038 55.000 0.00 0.00 0.00 2.52
1098 1314 1.589630 CCATGTCCGTCCGTCAAGA 59.410 57.895 0.00 0.00 0.00 3.02
1351 1570 1.339631 CGACAATCTTGGGCCCTGTTA 60.340 52.381 25.70 6.21 0.00 2.41
1435 1654 3.759865 ACGAAGTAGTCCCAGTCCA 57.240 52.632 0.00 0.00 41.94 4.02
1512 1749 2.665185 GGCAGTTGCGGAGTCGTT 60.665 61.111 0.00 0.00 43.26 3.85
1626 1885 1.689575 GGATCTGTAGAGGTGGAGGCA 60.690 57.143 0.00 0.00 0.00 4.75
1909 2177 4.394729 GAAATAGCCGGGGTCATCATTTA 58.605 43.478 2.18 0.00 0.00 1.40
2126 2397 2.252260 CGCTCCTGCAAACCAACG 59.748 61.111 0.00 0.00 39.64 4.10
2178 2452 1.455217 GGCATGGCTCCAAGCTGAT 60.455 57.895 12.86 0.00 41.99 2.90
2253 2530 0.846015 TCCATGCTTAGGATGGGGTG 59.154 55.000 28.11 7.08 40.84 4.61
2353 2630 1.040646 TCCTCGCAGTGTTGACTTCT 58.959 50.000 0.00 0.00 0.00 2.85
2502 2782 4.641541 GCATGGCATTCATACATATAGGCA 59.358 41.667 0.00 0.00 34.12 4.75
2504 2784 6.679638 GCAAGCATGGCATTCATACATATAGG 60.680 42.308 0.00 0.00 32.79 2.57
2646 2926 5.487488 AGAACCAGTCATGTCAATAACCCTA 59.513 40.000 0.00 0.00 0.00 3.53
2730 3015 8.755018 CCAAAATTCAGCTTAACACAAACTTAG 58.245 33.333 0.00 0.00 0.00 2.18
3218 3509 1.423161 TCAACACCATGTCCATGTCCA 59.577 47.619 6.53 0.00 37.11 4.02
3219 3510 2.086869 CTCAACACCATGTCCATGTCC 58.913 52.381 6.53 0.00 37.11 4.02
3220 3511 2.783135 ACTCAACACCATGTCCATGTC 58.217 47.619 6.53 0.00 37.11 3.06
3221 3512 2.886523 CAACTCAACACCATGTCCATGT 59.113 45.455 6.53 0.00 37.11 3.21
3222 3513 2.352030 GCAACTCAACACCATGTCCATG 60.352 50.000 0.14 0.14 38.51 3.66
3223 3514 1.888512 GCAACTCAACACCATGTCCAT 59.111 47.619 0.00 0.00 0.00 3.41
3248 3540 6.070767 CCCAGAGGAACTTAGTTTCTGTCATA 60.071 42.308 11.10 0.00 41.55 2.15
3452 3746 3.201290 CTCGCTTCTACCTGCATCAAAT 58.799 45.455 0.00 0.00 0.00 2.32
3573 3898 0.615331 TCCAAGGTCACATCCAGCTC 59.385 55.000 0.00 0.00 0.00 4.09
3620 3946 9.271828 CCAGATAGTTGCATTACATGTAATACA 57.728 33.333 26.59 24.33 37.22 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.