Multiple sequence alignment - TraesCS5B01G061200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G061200 chr5B 100.000 3317 0 0 1 3317 68376575 68379891 0.000000e+00 6126.0
1 TraesCS5B01G061200 chr5B 95.030 2475 59 25 899 3317 68843896 68846362 0.000000e+00 3831.0
2 TraesCS5B01G061200 chr5B 90.306 196 16 3 386 579 68843111 68843305 1.530000e-63 254.0
3 TraesCS5B01G061200 chr5B 87.437 199 23 2 575 772 401158674 401158477 9.260000e-56 228.0
4 TraesCS5B01G061200 chr5B 94.521 146 6 2 386 530 68842956 68843100 1.200000e-54 224.0
5 TraesCS5B01G061200 chr5B 82.129 263 39 6 124 385 615705655 615705400 5.570000e-53 219.0
6 TraesCS5B01G061200 chr5B 95.876 97 3 1 802 898 68843317 68843412 4.430000e-34 156.0
7 TraesCS5B01G061200 chr5D 94.017 2457 86 26 899 3317 62108325 62105892 0.000000e+00 3666.0
8 TraesCS5B01G061200 chr5D 86.099 223 31 0 124 346 448665888 448665666 1.190000e-59 241.0
9 TraesCS5B01G061200 chr5A 92.145 1706 74 21 974 2630 51899702 51898008 0.000000e+00 2353.0
10 TraesCS5B01G061200 chr5A 95.146 206 10 0 3112 3317 51898012 51897807 3.190000e-85 326.0
11 TraesCS5B01G061200 chr6A 85.978 271 34 4 124 392 602482554 602482286 1.510000e-73 287.0
12 TraesCS5B01G061200 chr3B 85.932 263 37 0 124 386 37242010 37242272 7.010000e-72 281.0
13 TraesCS5B01G061200 chr3B 84.674 261 39 1 130 389 669747624 669747364 3.280000e-65 259.0
14 TraesCS5B01G061200 chr3B 87.437 199 23 2 575 772 406110796 406110599 9.260000e-56 228.0
15 TraesCS5B01G061200 chr3B 86.458 96 13 0 1613 1708 728486049 728485954 4.530000e-19 106.0
16 TraesCS5B01G061200 chr3B 86.957 92 12 0 1616 1707 728258910 728258819 1.630000e-18 104.0
17 TraesCS5B01G061200 chr3A 84.733 262 38 2 124 384 35966989 35966729 9.130000e-66 261.0
18 TraesCS5B01G061200 chr3A 80.952 126 14 3 6 130 595076466 595076582 1.270000e-14 91.6
19 TraesCS5B01G061200 chr3A 83.871 93 15 0 1616 1708 686260390 686260298 4.560000e-14 89.8
20 TraesCS5B01G061200 chr2A 92.737 179 12 1 586 764 77351067 77350890 1.180000e-64 257.0
21 TraesCS5B01G061200 chr1A 91.713 181 13 2 588 766 557897692 557897512 1.980000e-62 250.0
22 TraesCS5B01G061200 chr1A 90.217 184 16 2 582 764 578019488 578019670 4.280000e-59 239.0
23 TraesCS5B01G061200 chr7A 90.270 185 16 2 581 764 32060316 32060499 1.190000e-59 241.0
24 TraesCS5B01G061200 chr4A 87.805 205 21 4 573 774 594364908 594365111 1.540000e-58 237.0
25 TraesCS5B01G061200 chr4A 79.842 253 48 3 129 380 627736723 627736973 7.310000e-42 182.0
26 TraesCS5B01G061200 chr3D 89.730 185 17 1 580 764 533955697 533955515 5.530000e-58 235.0
27 TraesCS5B01G061200 chr3D 81.992 261 44 3 124 384 452664982 452665239 5.570000e-53 219.0
28 TraesCS5B01G061200 chr3D 75.956 183 38 4 1532 1708 549045895 549045713 4.560000e-14 89.8
29 TraesCS5B01G061200 chr2B 87.437 199 23 2 575 772 389170552 389170355 9.260000e-56 228.0
30 TraesCS5B01G061200 chr2B 81.000 100 19 0 1609 1708 781198685 781198784 2.740000e-11 80.5
31 TraesCS5B01G061200 chr7B 82.625 259 37 7 124 378 54317749 54317495 4.310000e-54 222.0
32 TraesCS5B01G061200 chrUn 86.458 96 13 0 1613 1708 295941315 295941220 4.530000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G061200 chr5B 68376575 68379891 3316 False 6126.00 6126 100.00000 1 3317 1 chr5B.!!$F1 3316
1 TraesCS5B01G061200 chr5B 68842956 68846362 3406 False 1116.25 3831 93.93325 386 3317 4 chr5B.!!$F2 2931
2 TraesCS5B01G061200 chr5D 62105892 62108325 2433 True 3666.00 3666 94.01700 899 3317 1 chr5D.!!$R1 2418
3 TraesCS5B01G061200 chr5A 51897807 51899702 1895 True 1339.50 2353 93.64550 974 3317 2 chr5A.!!$R1 2343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 351 0.032952 GTGAGTTCAGTGCACCGGTA 59.967 55.0 14.63 0.00 0.00 4.02 F
367 368 0.108138 GTAGCACCACAAGCTCCGAT 60.108 55.0 0.00 0.00 42.32 4.18 F
368 369 0.108186 TAGCACCACAAGCTCCGATG 60.108 55.0 0.00 0.00 42.32 3.84 F
801 959 0.179067 TATTTGCCCGGATGGTCGAC 60.179 55.0 7.13 7.13 36.04 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 2330 0.033796 TCTTCCCCGTCTCGTGGTAT 60.034 55.000 0.00 0.0 0.00 2.73 R
2046 2771 1.676635 GCATGGCTCCAAGCTGACA 60.677 57.895 8.70 0.0 41.99 3.58 R
2104 2832 4.010349 GGGTATCCCACTTGAAGTTCTTG 58.990 47.826 4.17 0.0 44.65 3.02 R
2491 3219 4.886489 TGAATCACACTGTCATCAAACCAA 59.114 37.500 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.655733 GGAATTATCCGGTGCACACG 59.344 55.000 20.43 18.68 35.59 4.49
27 28 1.365699 GAATTATCCGGTGCACACGT 58.634 50.000 20.43 7.52 0.00 4.49
28 29 2.542597 GAATTATCCGGTGCACACGTA 58.457 47.619 20.43 7.32 0.00 3.57
29 30 1.930567 ATTATCCGGTGCACACGTAC 58.069 50.000 20.43 0.00 0.00 3.67
30 31 0.889994 TTATCCGGTGCACACGTACT 59.110 50.000 20.43 8.69 0.00 2.73
31 32 0.889994 TATCCGGTGCACACGTACTT 59.110 50.000 20.43 6.67 0.00 2.24
32 33 0.669318 ATCCGGTGCACACGTACTTG 60.669 55.000 20.43 6.85 0.00 3.16
33 34 1.593209 CCGGTGCACACGTACTTGT 60.593 57.895 20.43 0.00 0.00 3.16
35 36 1.827315 CGGTGCACACGTACTTGTGG 61.827 60.000 27.73 11.93 46.00 4.17
36 37 0.812412 GGTGCACACGTACTTGTGGT 60.812 55.000 27.73 0.00 46.00 4.16
37 38 0.303493 GTGCACACGTACTTGTGGTG 59.697 55.000 27.73 13.90 46.00 4.17
38 39 0.812014 TGCACACGTACTTGTGGTGG 60.812 55.000 27.73 8.53 46.00 4.61
39 40 0.812412 GCACACGTACTTGTGGTGGT 60.812 55.000 27.73 0.00 46.00 4.16
40 41 1.538634 GCACACGTACTTGTGGTGGTA 60.539 52.381 27.73 0.00 46.00 3.25
41 42 2.129607 CACACGTACTTGTGGTGGTAC 58.870 52.381 21.50 0.00 44.21 3.34
42 43 1.069049 ACACGTACTTGTGGTGGTACC 59.931 52.381 4.43 4.43 44.21 3.34
50 51 2.833227 TGGTGGTACCAGTGCACC 59.167 61.111 16.93 13.31 44.79 5.01
51 52 2.358247 GGTGGTACCAGTGCACCG 60.358 66.667 16.93 2.26 38.42 4.94
52 53 2.358247 GTGGTACCAGTGCACCGG 60.358 66.667 16.93 17.83 37.66 5.28
53 54 2.524640 TGGTACCAGTGCACCGGA 60.525 61.111 25.94 3.96 37.66 5.14
54 55 1.916273 TGGTACCAGTGCACCGGAT 60.916 57.895 25.94 12.07 37.66 4.18
55 56 1.449601 GGTACCAGTGCACCGGATG 60.450 63.158 25.94 11.41 0.00 3.51
67 68 3.799281 CACCGGATGCCATAAAACATT 57.201 42.857 9.46 0.00 0.00 2.71
68 69 4.122143 CACCGGATGCCATAAAACATTT 57.878 40.909 9.46 0.00 0.00 2.32
69 70 4.502962 CACCGGATGCCATAAAACATTTT 58.497 39.130 9.46 0.00 0.00 1.82
70 71 4.934602 CACCGGATGCCATAAAACATTTTT 59.065 37.500 9.46 0.00 0.00 1.94
71 72 6.102663 CACCGGATGCCATAAAACATTTTTA 58.897 36.000 9.46 0.00 0.00 1.52
72 73 6.591834 CACCGGATGCCATAAAACATTTTTAA 59.408 34.615 9.46 0.00 0.00 1.52
73 74 7.118390 CACCGGATGCCATAAAACATTTTTAAA 59.882 33.333 9.46 0.00 0.00 1.52
74 75 7.661847 ACCGGATGCCATAAAACATTTTTAAAA 59.338 29.630 9.46 0.00 0.00 1.52
75 76 8.507249 CCGGATGCCATAAAACATTTTTAAAAA 58.493 29.630 15.38 15.38 0.00 1.94
108 109 6.935741 AAAATCTAGCACACTAACACAACA 57.064 33.333 0.00 0.00 0.00 3.33
109 110 7.510549 AAAATCTAGCACACTAACACAACAT 57.489 32.000 0.00 0.00 0.00 2.71
110 111 6.727824 AATCTAGCACACTAACACAACATC 57.272 37.500 0.00 0.00 0.00 3.06
111 112 5.208463 TCTAGCACACTAACACAACATCA 57.792 39.130 0.00 0.00 0.00 3.07
112 113 5.606505 TCTAGCACACTAACACAACATCAA 58.393 37.500 0.00 0.00 0.00 2.57
113 114 6.230472 TCTAGCACACTAACACAACATCAAT 58.770 36.000 0.00 0.00 0.00 2.57
114 115 5.112220 AGCACACTAACACAACATCAATG 57.888 39.130 0.00 0.00 0.00 2.82
115 116 4.580167 AGCACACTAACACAACATCAATGT 59.420 37.500 0.00 0.00 44.20 2.71
116 117 5.762711 AGCACACTAACACAACATCAATGTA 59.237 36.000 0.00 0.00 40.80 2.29
117 118 6.430925 AGCACACTAACACAACATCAATGTAT 59.569 34.615 0.00 0.00 40.80 2.29
118 119 6.524239 GCACACTAACACAACATCAATGTATG 59.476 38.462 0.00 1.54 40.80 2.39
119 120 7.022979 CACACTAACACAACATCAATGTATGG 58.977 38.462 10.41 1.82 40.80 2.74
120 121 6.714810 ACACTAACACAACATCAATGTATGGT 59.285 34.615 10.41 7.36 40.80 3.55
133 134 9.636879 CATCAATGTATGGTGTTACAAAAATGA 57.363 29.630 0.00 0.00 35.30 2.57
161 162 9.793252 AAATTTAACATCAGTGTGATAATGAGC 57.207 29.630 0.00 0.00 36.75 4.26
162 163 6.925610 TTAACATCAGTGTGATAATGAGCC 57.074 37.500 0.00 0.00 36.75 4.70
163 164 4.492494 ACATCAGTGTGATAATGAGCCA 57.508 40.909 0.00 0.00 36.75 4.75
164 165 4.847198 ACATCAGTGTGATAATGAGCCAA 58.153 39.130 0.00 0.00 36.75 4.52
165 166 5.255687 ACATCAGTGTGATAATGAGCCAAA 58.744 37.500 0.00 0.00 36.75 3.28
166 167 5.889853 ACATCAGTGTGATAATGAGCCAAAT 59.110 36.000 0.00 0.00 36.75 2.32
167 168 6.039047 ACATCAGTGTGATAATGAGCCAAATC 59.961 38.462 0.00 0.00 36.75 2.17
168 169 5.748402 TCAGTGTGATAATGAGCCAAATCT 58.252 37.500 0.00 0.00 0.00 2.40
169 170 6.888105 TCAGTGTGATAATGAGCCAAATCTA 58.112 36.000 0.00 0.00 0.00 1.98
170 171 7.337938 TCAGTGTGATAATGAGCCAAATCTAA 58.662 34.615 0.00 0.00 0.00 2.10
171 172 7.828717 TCAGTGTGATAATGAGCCAAATCTAAA 59.171 33.333 0.00 0.00 0.00 1.85
172 173 8.461222 CAGTGTGATAATGAGCCAAATCTAAAA 58.539 33.333 0.00 0.00 0.00 1.52
173 174 8.462016 AGTGTGATAATGAGCCAAATCTAAAAC 58.538 33.333 0.00 0.00 0.00 2.43
174 175 8.462016 GTGTGATAATGAGCCAAATCTAAAACT 58.538 33.333 0.00 0.00 0.00 2.66
175 176 8.677300 TGTGATAATGAGCCAAATCTAAAACTC 58.323 33.333 0.00 0.00 0.00 3.01
176 177 8.677300 GTGATAATGAGCCAAATCTAAAACTCA 58.323 33.333 0.00 0.00 38.42 3.41
177 178 9.241919 TGATAATGAGCCAAATCTAAAACTCAA 57.758 29.630 0.00 0.00 37.66 3.02
178 179 9.727627 GATAATGAGCCAAATCTAAAACTCAAG 57.272 33.333 0.00 0.00 37.66 3.02
179 180 7.530426 AATGAGCCAAATCTAAAACTCAAGT 57.470 32.000 0.00 0.00 37.66 3.16
180 181 6.959639 TGAGCCAAATCTAAAACTCAAGTT 57.040 33.333 0.00 0.00 40.50 2.66
181 182 8.635765 ATGAGCCAAATCTAAAACTCAAGTTA 57.364 30.769 0.00 0.00 37.66 2.24
182 183 8.635765 TGAGCCAAATCTAAAACTCAAGTTAT 57.364 30.769 0.00 0.00 37.25 1.89
183 184 9.077885 TGAGCCAAATCTAAAACTCAAGTTATT 57.922 29.630 0.00 0.00 37.25 1.40
184 185 9.914131 GAGCCAAATCTAAAACTCAAGTTATTT 57.086 29.630 0.00 0.00 37.25 1.40
210 211 9.733556 TTATGTACTATTGATTGTTGGACTTGT 57.266 29.630 0.00 0.00 0.00 3.16
211 212 7.667043 TGTACTATTGATTGTTGGACTTGTC 57.333 36.000 0.00 0.00 0.00 3.18
212 213 7.220740 TGTACTATTGATTGTTGGACTTGTCA 58.779 34.615 3.08 0.00 0.00 3.58
213 214 7.882791 TGTACTATTGATTGTTGGACTTGTCAT 59.117 33.333 3.08 0.00 0.00 3.06
214 215 7.765695 ACTATTGATTGTTGGACTTGTCATT 57.234 32.000 3.08 0.00 0.00 2.57
215 216 8.181904 ACTATTGATTGTTGGACTTGTCATTT 57.818 30.769 3.08 0.00 0.00 2.32
216 217 8.641541 ACTATTGATTGTTGGACTTGTCATTTT 58.358 29.630 3.08 0.00 0.00 1.82
217 218 9.480053 CTATTGATTGTTGGACTTGTCATTTTT 57.520 29.630 3.08 0.00 0.00 1.94
218 219 7.536895 TTGATTGTTGGACTTGTCATTTTTG 57.463 32.000 3.08 0.00 0.00 2.44
219 220 6.638610 TGATTGTTGGACTTGTCATTTTTGT 58.361 32.000 3.08 0.00 0.00 2.83
220 221 7.102346 TGATTGTTGGACTTGTCATTTTTGTT 58.898 30.769 3.08 0.00 0.00 2.83
221 222 7.605691 TGATTGTTGGACTTGTCATTTTTGTTT 59.394 29.630 3.08 0.00 0.00 2.83
222 223 7.736447 TTGTTGGACTTGTCATTTTTGTTTT 57.264 28.000 3.08 0.00 0.00 2.43
223 224 7.736447 TGTTGGACTTGTCATTTTTGTTTTT 57.264 28.000 3.08 0.00 0.00 1.94
224 225 8.833231 TGTTGGACTTGTCATTTTTGTTTTTA 57.167 26.923 3.08 0.00 0.00 1.52
225 226 8.930760 TGTTGGACTTGTCATTTTTGTTTTTAG 58.069 29.630 3.08 0.00 0.00 1.85
226 227 9.145865 GTTGGACTTGTCATTTTTGTTTTTAGA 57.854 29.630 3.08 0.00 0.00 2.10
227 228 8.696410 TGGACTTGTCATTTTTGTTTTTAGAC 57.304 30.769 3.08 0.00 0.00 2.59
228 229 8.527810 TGGACTTGTCATTTTTGTTTTTAGACT 58.472 29.630 3.08 0.00 0.00 3.24
229 230 9.366216 GGACTTGTCATTTTTGTTTTTAGACTT 57.634 29.630 3.08 0.00 0.00 3.01
247 248 9.832445 TTTAGACTTATGTTCTGAGTTTTGACT 57.168 29.630 0.00 0.00 0.00 3.41
248 249 9.832445 TTAGACTTATGTTCTGAGTTTTGACTT 57.168 29.630 0.00 0.00 0.00 3.01
249 250 8.147642 AGACTTATGTTCTGAGTTTTGACTTG 57.852 34.615 0.00 0.00 0.00 3.16
250 251 7.987458 AGACTTATGTTCTGAGTTTTGACTTGA 59.013 33.333 0.00 0.00 0.00 3.02
251 252 8.506168 ACTTATGTTCTGAGTTTTGACTTGAA 57.494 30.769 0.00 0.00 0.00 2.69
252 253 8.956426 ACTTATGTTCTGAGTTTTGACTTGAAA 58.044 29.630 0.00 0.00 0.00 2.69
253 254 9.956720 CTTATGTTCTGAGTTTTGACTTGAAAT 57.043 29.630 0.00 0.00 0.00 2.17
256 257 9.657419 ATGTTCTGAGTTTTGACTTGAAATTTT 57.343 25.926 0.00 0.00 0.00 1.82
260 261 9.748708 TCTGAGTTTTGACTTGAAATTTTATGG 57.251 29.630 0.00 0.00 0.00 2.74
261 262 8.364129 TGAGTTTTGACTTGAAATTTTATGGC 57.636 30.769 0.00 0.00 0.00 4.40
262 263 7.984050 TGAGTTTTGACTTGAAATTTTATGGCA 59.016 29.630 0.74 0.74 0.00 4.92
263 264 8.729805 AGTTTTGACTTGAAATTTTATGGCAA 57.270 26.923 11.66 11.66 0.00 4.52
264 265 8.611757 AGTTTTGACTTGAAATTTTATGGCAAC 58.388 29.630 14.40 7.29 0.00 4.17
265 266 7.489574 TTTGACTTGAAATTTTATGGCAACC 57.510 32.000 14.40 0.00 0.00 3.77
266 267 6.166984 TGACTTGAAATTTTATGGCAACCA 57.833 33.333 2.29 0.00 38.19 3.67
267 268 6.586344 TGACTTGAAATTTTATGGCAACCAA 58.414 32.000 2.29 0.00 36.95 3.67
268 269 6.481644 TGACTTGAAATTTTATGGCAACCAAC 59.518 34.615 2.29 0.00 36.95 3.77
269 270 6.352516 ACTTGAAATTTTATGGCAACCAACA 58.647 32.000 0.00 0.00 36.95 3.33
270 271 6.997476 ACTTGAAATTTTATGGCAACCAACAT 59.003 30.769 0.00 0.00 36.95 2.71
271 272 7.501892 ACTTGAAATTTTATGGCAACCAACATT 59.498 29.630 0.00 0.00 36.95 2.71
272 273 7.199541 TGAAATTTTATGGCAACCAACATTG 57.800 32.000 0.00 0.00 36.95 2.82
273 274 6.994496 TGAAATTTTATGGCAACCAACATTGA 59.006 30.769 0.00 0.00 36.95 2.57
274 275 7.664731 TGAAATTTTATGGCAACCAACATTGAT 59.335 29.630 0.00 0.00 36.95 2.57
275 276 6.988622 ATTTTATGGCAACCAACATTGATG 57.011 33.333 0.00 0.00 36.95 3.07
276 277 5.480642 TTTATGGCAACCAACATTGATGT 57.519 34.783 0.00 0.00 44.20 3.06
289 290 4.300803 ACATTGATGTTGTGTGAATGTGC 58.699 39.130 0.00 0.00 37.90 4.57
290 291 4.038282 ACATTGATGTTGTGTGAATGTGCT 59.962 37.500 0.00 0.00 37.90 4.40
291 292 5.241285 ACATTGATGTTGTGTGAATGTGCTA 59.759 36.000 0.00 0.00 37.90 3.49
292 293 5.764487 TTGATGTTGTGTGAATGTGCTAA 57.236 34.783 0.00 0.00 0.00 3.09
293 294 5.764487 TGATGTTGTGTGAATGTGCTAAA 57.236 34.783 0.00 0.00 0.00 1.85
294 295 6.141560 TGATGTTGTGTGAATGTGCTAAAA 57.858 33.333 0.00 0.00 0.00 1.52
295 296 6.207928 TGATGTTGTGTGAATGTGCTAAAAG 58.792 36.000 0.00 0.00 0.00 2.27
296 297 5.826601 TGTTGTGTGAATGTGCTAAAAGA 57.173 34.783 0.00 0.00 0.00 2.52
297 298 6.201226 TGTTGTGTGAATGTGCTAAAAGAA 57.799 33.333 0.00 0.00 0.00 2.52
298 299 6.625362 TGTTGTGTGAATGTGCTAAAAGAAA 58.375 32.000 0.00 0.00 0.00 2.52
299 300 7.264221 TGTTGTGTGAATGTGCTAAAAGAAAT 58.736 30.769 0.00 0.00 0.00 2.17
300 301 7.434897 TGTTGTGTGAATGTGCTAAAAGAAATC 59.565 33.333 0.00 0.00 0.00 2.17
301 302 7.036996 TGTGTGAATGTGCTAAAAGAAATCA 57.963 32.000 0.00 0.00 0.00 2.57
302 303 7.140705 TGTGTGAATGTGCTAAAAGAAATCAG 58.859 34.615 0.00 0.00 0.00 2.90
303 304 7.013178 TGTGTGAATGTGCTAAAAGAAATCAGA 59.987 33.333 0.00 0.00 0.00 3.27
304 305 7.862372 GTGTGAATGTGCTAAAAGAAATCAGAA 59.138 33.333 0.00 0.00 0.00 3.02
305 306 8.579006 TGTGAATGTGCTAAAAGAAATCAGAAT 58.421 29.630 0.00 0.00 0.00 2.40
306 307 9.415544 GTGAATGTGCTAAAAGAAATCAGAATT 57.584 29.630 0.00 0.00 0.00 2.17
307 308 9.985730 TGAATGTGCTAAAAGAAATCAGAATTT 57.014 25.926 0.00 0.00 37.80 1.82
330 331 7.712322 TTTTTGAACATTTTAAAAGCGCAAC 57.288 28.000 11.47 0.00 0.00 4.17
331 332 4.684193 TGAACATTTTAAAAGCGCAACG 57.316 36.364 11.47 0.00 0.00 4.10
332 333 4.106197 TGAACATTTTAAAAGCGCAACGT 58.894 34.783 11.47 0.00 0.00 3.99
333 334 4.027295 TGAACATTTTAAAAGCGCAACGTG 60.027 37.500 11.47 0.09 0.00 4.49
334 335 3.696898 ACATTTTAAAAGCGCAACGTGA 58.303 36.364 11.47 0.00 0.00 4.35
335 336 3.728718 ACATTTTAAAAGCGCAACGTGAG 59.271 39.130 11.47 0.00 0.00 3.51
346 347 4.438346 ACGTGAGTTCAGTGCACC 57.562 55.556 14.63 0.00 46.40 5.01
347 348 1.591594 ACGTGAGTTCAGTGCACCG 60.592 57.895 14.63 9.78 46.40 4.94
348 349 2.310233 CGTGAGTTCAGTGCACCGG 61.310 63.158 14.63 6.49 0.00 5.28
349 350 1.227556 GTGAGTTCAGTGCACCGGT 60.228 57.895 14.63 0.00 0.00 5.28
350 351 0.032952 GTGAGTTCAGTGCACCGGTA 59.967 55.000 14.63 0.00 0.00 4.02
351 352 0.317160 TGAGTTCAGTGCACCGGTAG 59.683 55.000 14.63 2.73 0.00 3.18
352 353 1.004918 AGTTCAGTGCACCGGTAGC 60.005 57.895 14.63 14.59 0.00 3.58
353 354 1.301401 GTTCAGTGCACCGGTAGCA 60.301 57.895 22.47 22.47 40.19 3.49
358 359 3.551407 TGCACCGGTAGCACCACA 61.551 61.111 22.47 5.12 38.47 4.17
359 360 2.281208 GCACCGGTAGCACCACAA 60.281 61.111 19.85 0.00 38.47 3.33
360 361 2.325082 GCACCGGTAGCACCACAAG 61.325 63.158 19.85 0.99 38.47 3.16
361 362 2.032071 ACCGGTAGCACCACAAGC 59.968 61.111 4.49 0.00 38.47 4.01
362 363 2.347490 CCGGTAGCACCACAAGCT 59.653 61.111 0.00 0.00 45.77 3.74
363 364 1.741770 CCGGTAGCACCACAAGCTC 60.742 63.158 0.00 0.00 42.32 4.09
364 365 1.741770 CGGTAGCACCACAAGCTCC 60.742 63.158 6.21 0.00 42.32 4.70
365 366 1.741770 GGTAGCACCACAAGCTCCG 60.742 63.158 0.00 0.00 42.32 4.63
366 367 1.292223 GTAGCACCACAAGCTCCGA 59.708 57.895 0.00 0.00 42.32 4.55
367 368 0.108138 GTAGCACCACAAGCTCCGAT 60.108 55.000 0.00 0.00 42.32 4.18
368 369 0.108186 TAGCACCACAAGCTCCGATG 60.108 55.000 0.00 0.00 42.32 3.84
369 370 3.044059 GCACCACAAGCTCCGATGC 62.044 63.158 0.00 0.00 0.00 3.91
370 371 1.672030 CACCACAAGCTCCGATGCA 60.672 57.895 0.00 0.00 34.99 3.96
371 372 1.672356 ACCACAAGCTCCGATGCAC 60.672 57.895 0.00 0.00 34.99 4.57
372 373 2.401766 CCACAAGCTCCGATGCACC 61.402 63.158 0.00 0.00 34.99 5.01
373 374 1.672030 CACAAGCTCCGATGCACCA 60.672 57.895 0.00 0.00 34.99 4.17
374 375 1.073025 ACAAGCTCCGATGCACCAA 59.927 52.632 0.00 0.00 34.99 3.67
375 376 0.537143 ACAAGCTCCGATGCACCAAA 60.537 50.000 0.00 0.00 34.99 3.28
376 377 0.813184 CAAGCTCCGATGCACCAAAT 59.187 50.000 0.00 0.00 34.99 2.32
377 378 2.016318 CAAGCTCCGATGCACCAAATA 58.984 47.619 0.00 0.00 34.99 1.40
378 379 2.620115 CAAGCTCCGATGCACCAAATAT 59.380 45.455 0.00 0.00 34.99 1.28
379 380 2.936202 AGCTCCGATGCACCAAATATT 58.064 42.857 0.00 0.00 34.99 1.28
380 381 3.290710 AGCTCCGATGCACCAAATATTT 58.709 40.909 0.00 0.00 34.99 1.40
381 382 3.701040 AGCTCCGATGCACCAAATATTTT 59.299 39.130 0.00 0.00 34.99 1.82
382 383 4.044426 GCTCCGATGCACCAAATATTTTC 58.956 43.478 0.00 0.00 0.00 2.29
383 384 4.610945 CTCCGATGCACCAAATATTTTCC 58.389 43.478 0.00 0.00 0.00 3.13
384 385 3.383185 TCCGATGCACCAAATATTTTCCC 59.617 43.478 0.00 0.00 0.00 3.97
430 585 3.288092 GGTCCAACCAATACTCCATTCC 58.712 50.000 0.00 0.00 38.42 3.01
441 596 8.281531 ACCAATACTCCATTCCAATGAATAAGA 58.718 33.333 0.56 0.00 39.20 2.10
450 605 5.614324 TCCAATGAATAAGATGTCCTCGT 57.386 39.130 0.00 0.00 0.00 4.18
602 758 9.661954 TTTTAAGGATCTGTCTAGGACATATCT 57.338 33.333 18.51 8.44 42.17 1.98
604 760 9.967451 TTAAGGATCTGTCTAGGACATATCTAG 57.033 37.037 18.51 1.07 42.17 2.43
605 761 7.822749 AGGATCTGTCTAGGACATATCTAGA 57.177 40.000 18.51 0.00 42.17 2.43
606 762 8.405971 AGGATCTGTCTAGGACATATCTAGAT 57.594 38.462 10.73 10.73 42.17 1.98
607 763 8.274322 AGGATCTGTCTAGGACATATCTAGATG 58.726 40.741 15.79 3.53 42.17 2.90
608 764 8.052748 GGATCTGTCTAGGACATATCTAGATGT 58.947 40.741 15.79 7.11 42.17 3.06
609 765 8.806429 ATCTGTCTAGGACATATCTAGATGTG 57.194 38.462 23.54 23.54 43.25 3.21
610 766 7.978925 TCTGTCTAGGACATATCTAGATGTGA 58.021 38.462 29.72 11.29 43.25 3.58
611 767 7.880713 TCTGTCTAGGACATATCTAGATGTGAC 59.119 40.741 29.72 24.07 43.25 3.67
612 768 7.518188 TGTCTAGGACATATCTAGATGTGACA 58.482 38.462 29.72 20.47 43.25 3.58
613 769 8.166726 TGTCTAGGACATATCTAGATGTGACAT 58.833 37.037 29.72 24.02 43.25 3.06
614 770 9.674068 GTCTAGGACATATCTAGATGTGACATA 57.326 37.037 29.72 23.88 43.25 2.29
615 771 9.898152 TCTAGGACATATCTAGATGTGACATAG 57.102 37.037 29.30 29.30 40.18 2.23
616 772 9.679661 CTAGGACATATCTAGATGTGACATAGT 57.320 37.037 28.06 13.44 40.18 2.12
617 773 8.948401 AGGACATATCTAGATGTGACATAGTT 57.052 34.615 29.72 10.54 40.18 2.24
634 790 6.216569 ACATAGTTATGTCACATCTAAGCCG 58.783 40.000 0.00 0.00 42.96 5.52
635 791 6.040504 ACATAGTTATGTCACATCTAAGCCGA 59.959 38.462 0.00 0.00 42.96 5.54
636 792 5.537300 AGTTATGTCACATCTAAGCCGAT 57.463 39.130 0.00 0.00 0.00 4.18
637 793 5.292765 AGTTATGTCACATCTAAGCCGATG 58.707 41.667 0.00 6.68 44.88 3.84
647 803 6.851222 CATCTAAGCCGATGTTCACTTTAT 57.149 37.500 0.00 0.00 36.80 1.40
648 804 7.251704 CATCTAAGCCGATGTTCACTTTATT 57.748 36.000 0.00 0.00 36.80 1.40
649 805 7.697691 CATCTAAGCCGATGTTCACTTTATTT 58.302 34.615 0.00 0.00 36.80 1.40
650 806 7.072177 TCTAAGCCGATGTTCACTTTATTTG 57.928 36.000 0.00 0.00 0.00 2.32
651 807 5.705609 AAGCCGATGTTCACTTTATTTGT 57.294 34.783 0.00 0.00 0.00 2.83
652 808 5.046910 AGCCGATGTTCACTTTATTTGTG 57.953 39.130 0.00 0.00 36.82 3.33
653 809 3.608073 GCCGATGTTCACTTTATTTGTGC 59.392 43.478 0.00 0.00 35.58 4.57
654 810 4.615912 GCCGATGTTCACTTTATTTGTGCT 60.616 41.667 0.00 0.00 35.58 4.40
655 811 5.460646 CCGATGTTCACTTTATTTGTGCTT 58.539 37.500 0.00 0.00 35.58 3.91
656 812 5.920273 CCGATGTTCACTTTATTTGTGCTTT 59.080 36.000 0.00 0.00 35.58 3.51
657 813 7.081349 CCGATGTTCACTTTATTTGTGCTTTA 58.919 34.615 0.00 0.00 35.58 1.85
658 814 7.754924 CCGATGTTCACTTTATTTGTGCTTTAT 59.245 33.333 0.00 0.00 35.58 1.40
659 815 8.577939 CGATGTTCACTTTATTTGTGCTTTATG 58.422 33.333 0.00 0.00 35.58 1.90
660 816 9.410556 GATGTTCACTTTATTTGTGCTTTATGT 57.589 29.630 0.00 0.00 35.58 2.29
661 817 9.762933 ATGTTCACTTTATTTGTGCTTTATGTT 57.237 25.926 0.00 0.00 35.58 2.71
662 818 9.593134 TGTTCACTTTATTTGTGCTTTATGTTT 57.407 25.926 0.00 0.00 35.58 2.83
672 828 9.905171 ATTTGTGCTTTATGTTTTTGTTTTTGT 57.095 22.222 0.00 0.00 0.00 2.83
673 829 9.736023 TTTGTGCTTTATGTTTTTGTTTTTGTT 57.264 22.222 0.00 0.00 0.00 2.83
674 830 9.736023 TTGTGCTTTATGTTTTTGTTTTTGTTT 57.264 22.222 0.00 0.00 0.00 2.83
675 831 9.736023 TGTGCTTTATGTTTTTGTTTTTGTTTT 57.264 22.222 0.00 0.00 0.00 2.43
708 864 7.959689 TTTTGTTGCTGCATTATGTATTTGT 57.040 28.000 1.84 0.00 0.00 2.83
709 865 6.947903 TTGTTGCTGCATTATGTATTTGTG 57.052 33.333 1.84 0.00 0.00 3.33
710 866 5.409211 TGTTGCTGCATTATGTATTTGTGG 58.591 37.500 1.84 0.00 0.00 4.17
711 867 4.652421 TGCTGCATTATGTATTTGTGGG 57.348 40.909 0.00 0.00 0.00 4.61
712 868 4.276642 TGCTGCATTATGTATTTGTGGGA 58.723 39.130 0.00 0.00 0.00 4.37
713 869 4.338964 TGCTGCATTATGTATTTGTGGGAG 59.661 41.667 0.00 0.00 0.00 4.30
714 870 4.339247 GCTGCATTATGTATTTGTGGGAGT 59.661 41.667 0.00 0.00 0.00 3.85
715 871 5.163519 GCTGCATTATGTATTTGTGGGAGTT 60.164 40.000 0.00 0.00 0.00 3.01
716 872 6.627953 GCTGCATTATGTATTTGTGGGAGTTT 60.628 38.462 0.00 0.00 0.00 2.66
717 873 7.416213 GCTGCATTATGTATTTGTGGGAGTTTA 60.416 37.037 0.00 0.00 0.00 2.01
718 874 7.995289 TGCATTATGTATTTGTGGGAGTTTAG 58.005 34.615 0.00 0.00 0.00 1.85
719 875 7.831690 TGCATTATGTATTTGTGGGAGTTTAGA 59.168 33.333 0.00 0.00 0.00 2.10
720 876 8.850156 GCATTATGTATTTGTGGGAGTTTAGAT 58.150 33.333 0.00 0.00 0.00 1.98
722 878 9.920946 ATTATGTATTTGTGGGAGTTTAGATGT 57.079 29.630 0.00 0.00 0.00 3.06
723 879 7.630242 ATGTATTTGTGGGAGTTTAGATGTG 57.370 36.000 0.00 0.00 0.00 3.21
724 880 6.774673 TGTATTTGTGGGAGTTTAGATGTGA 58.225 36.000 0.00 0.00 0.00 3.58
725 881 6.653320 TGTATTTGTGGGAGTTTAGATGTGAC 59.347 38.462 0.00 0.00 0.00 3.67
726 882 4.698201 TTGTGGGAGTTTAGATGTGACA 57.302 40.909 0.00 0.00 0.00 3.58
727 883 4.908601 TGTGGGAGTTTAGATGTGACAT 57.091 40.909 0.00 0.00 0.00 3.06
728 884 4.832248 TGTGGGAGTTTAGATGTGACATC 58.168 43.478 17.46 17.46 0.00 3.06
729 885 4.532126 TGTGGGAGTTTAGATGTGACATCT 59.468 41.667 28.69 28.69 0.00 2.90
730 886 5.013079 TGTGGGAGTTTAGATGTGACATCTT 59.987 40.000 30.49 14.69 0.00 2.40
731 887 5.940470 GTGGGAGTTTAGATGTGACATCTTT 59.060 40.000 30.49 15.32 0.00 2.52
732 888 5.939883 TGGGAGTTTAGATGTGACATCTTTG 59.060 40.000 30.49 0.00 0.00 2.77
733 889 6.173339 GGGAGTTTAGATGTGACATCTTTGA 58.827 40.000 30.49 15.65 0.00 2.69
734 890 6.655003 GGGAGTTTAGATGTGACATCTTTGAA 59.345 38.462 30.49 19.82 0.00 2.69
735 891 7.174946 GGGAGTTTAGATGTGACATCTTTGAAA 59.825 37.037 30.49 21.71 0.00 2.69
736 892 8.567948 GGAGTTTAGATGTGACATCTTTGAAAA 58.432 33.333 30.49 21.39 0.00 2.29
737 893 9.950680 GAGTTTAGATGTGACATCTTTGAAAAA 57.049 29.630 30.49 21.06 0.00 1.94
738 894 9.736023 AGTTTAGATGTGACATCTTTGAAAAAC 57.264 29.630 30.49 28.58 0.00 2.43
739 895 9.515020 GTTTAGATGTGACATCTTTGAAAAACA 57.485 29.630 30.49 8.92 29.17 2.83
741 897 9.897744 TTAGATGTGACATCTTTGAAAAACATC 57.102 29.630 30.49 0.00 0.00 3.06
742 898 8.174733 AGATGTGACATCTTTGAAAAACATCT 57.825 30.769 21.66 8.71 36.69 2.90
743 899 9.288576 AGATGTGACATCTTTGAAAAACATCTA 57.711 29.630 21.66 0.00 38.80 1.98
744 900 9.552114 GATGTGACATCTTTGAAAAACATCTAG 57.448 33.333 17.84 0.00 0.00 2.43
745 901 8.675705 TGTGACATCTTTGAAAAACATCTAGA 57.324 30.769 0.00 0.00 0.00 2.43
746 902 9.288576 TGTGACATCTTTGAAAAACATCTAGAT 57.711 29.630 0.00 0.00 0.00 1.98
747 903 9.552114 GTGACATCTTTGAAAAACATCTAGATG 57.448 33.333 27.63 27.63 44.15 2.90
795 953 8.606040 AATTATTTCAAATATTTGCCCGGATG 57.394 30.769 21.15 0.00 38.05 3.51
796 954 4.399004 TTTCAAATATTTGCCCGGATGG 57.601 40.909 21.15 0.00 38.05 3.51
797 955 3.025322 TCAAATATTTGCCCGGATGGT 57.975 42.857 21.15 0.00 38.05 3.55
798 956 2.955660 TCAAATATTTGCCCGGATGGTC 59.044 45.455 21.15 0.00 38.05 4.02
799 957 1.604604 AATATTTGCCCGGATGGTCG 58.395 50.000 0.73 0.00 36.04 4.79
800 958 0.762418 ATATTTGCCCGGATGGTCGA 59.238 50.000 0.73 0.00 36.04 4.20
801 959 0.179067 TATTTGCCCGGATGGTCGAC 60.179 55.000 7.13 7.13 36.04 4.20
919 1560 1.679977 TGAACCCTAGGTCCGTCCG 60.680 63.158 8.29 0.00 41.99 4.79
932 1573 1.093496 CCGTCCGTAGCCCCAAATTC 61.093 60.000 0.00 0.00 0.00 2.17
937 1578 1.170442 CGTAGCCCCAAATTCCGTTT 58.830 50.000 0.00 0.00 0.00 3.60
987 1628 3.554342 CCATCCCCTCGCCTCTGG 61.554 72.222 0.00 0.00 0.00 3.86
1000 1641 1.556911 GCCTCTGGTTGGATCTCTTCA 59.443 52.381 0.00 0.00 0.00 3.02
1001 1642 2.172293 GCCTCTGGTTGGATCTCTTCAT 59.828 50.000 0.00 0.00 0.00 2.57
1054 1721 0.966370 ACCTTCTCTTCCCGAGTCCG 60.966 60.000 0.00 0.00 40.75 4.79
1206 1888 0.460987 CGCCACATCTCTCCCACTTC 60.461 60.000 0.00 0.00 0.00 3.01
1611 2330 2.218037 CTGCAGCAGTCGACAGGCTA 62.218 60.000 27.29 16.08 35.82 3.93
1839 2558 3.059188 GCCGAAACAAAGACTCGATCAAA 60.059 43.478 0.00 0.00 34.52 2.69
1902 2624 0.999712 CCACCACCCCTGTTTCCTAT 59.000 55.000 0.00 0.00 0.00 2.57
2021 2746 4.704833 GCAGGAGCGCTGGAACCA 62.705 66.667 18.48 0.00 0.00 3.67
2075 2800 1.316651 GAGCCATGCCTTTCTGATCC 58.683 55.000 0.00 0.00 0.00 3.36
2080 2805 2.423803 CCATGCCTTTCTGATCCCATGA 60.424 50.000 0.00 0.00 33.71 3.07
2104 2832 1.801332 CTGAGCAGCAAGACCATGC 59.199 57.895 0.00 0.00 46.78 4.06
2422 3150 6.839124 TGCCATGAAAACTAGTGAATCATT 57.161 33.333 12.97 0.00 0.00 2.57
2430 3158 5.376854 AACTAGTGAATCATTGTGTTGGC 57.623 39.130 0.00 0.00 0.00 4.52
2491 3219 4.500499 AGTGCATCTTATTCAGGAGCTT 57.500 40.909 0.00 0.00 0.00 3.74
2495 3223 3.950395 GCATCTTATTCAGGAGCTTTGGT 59.050 43.478 0.00 0.00 0.00 3.67
2965 3698 5.671493 ACGGATTTCAATCTCGTTTCCTAT 58.329 37.500 9.09 0.00 38.34 2.57
3055 3794 3.133365 AAAACCCGCAGAGCCTGGT 62.133 57.895 0.00 0.00 32.67 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.729194 CACCGGATAATTCCCCAACAA 58.271 47.619 9.46 0.00 39.01 2.83
1 2 1.683629 GCACCGGATAATTCCCCAACA 60.684 52.381 9.46 0.00 39.01 3.33
2 3 1.029681 GCACCGGATAATTCCCCAAC 58.970 55.000 9.46 0.00 39.01 3.77
3 4 0.626382 TGCACCGGATAATTCCCCAA 59.374 50.000 9.46 0.00 39.01 4.12
4 5 0.106918 GTGCACCGGATAATTCCCCA 60.107 55.000 9.46 0.00 39.01 4.96
5 6 0.106918 TGTGCACCGGATAATTCCCC 60.107 55.000 15.69 0.00 39.01 4.81
6 7 1.021968 GTGTGCACCGGATAATTCCC 58.978 55.000 15.69 0.00 39.01 3.97
7 8 0.655733 CGTGTGCACCGGATAATTCC 59.344 55.000 15.69 0.00 38.81 3.01
8 9 1.365699 ACGTGTGCACCGGATAATTC 58.634 50.000 24.76 0.00 0.00 2.17
9 10 2.093869 AGTACGTGTGCACCGGATAATT 60.094 45.455 24.76 10.54 0.00 1.40
10 11 1.479323 AGTACGTGTGCACCGGATAAT 59.521 47.619 24.76 10.83 0.00 1.28
11 12 0.889994 AGTACGTGTGCACCGGATAA 59.110 50.000 24.76 9.99 0.00 1.75
12 13 0.889994 AAGTACGTGTGCACCGGATA 59.110 50.000 24.76 11.42 0.00 2.59
13 14 0.669318 CAAGTACGTGTGCACCGGAT 60.669 55.000 24.76 12.22 0.00 4.18
14 15 1.300311 CAAGTACGTGTGCACCGGA 60.300 57.895 24.76 17.60 0.00 5.14
15 16 1.593209 ACAAGTACGTGTGCACCGG 60.593 57.895 24.76 15.43 0.00 5.28
16 17 1.562691 CACAAGTACGTGTGCACCG 59.437 57.895 25.34 21.20 42.26 4.94
17 18 0.812412 ACCACAAGTACGTGTGCACC 60.812 55.000 29.50 4.74 46.24 5.01
18 19 0.303493 CACCACAAGTACGTGTGCAC 59.697 55.000 29.50 10.75 46.24 4.57
19 20 0.812014 CCACCACAAGTACGTGTGCA 60.812 55.000 29.50 0.00 46.24 4.57
20 21 0.812412 ACCACCACAAGTACGTGTGC 60.812 55.000 29.50 0.00 46.24 4.57
21 22 2.129607 GTACCACCACAAGTACGTGTG 58.870 52.381 28.40 28.40 46.98 3.82
22 23 1.069049 GGTACCACCACAAGTACGTGT 59.931 52.381 8.75 8.75 39.81 4.49
23 24 1.068895 TGGTACCACCACAAGTACGTG 59.931 52.381 11.60 7.29 44.79 4.49
24 25 1.342174 CTGGTACCACCACAAGTACGT 59.658 52.381 11.60 0.00 44.79 3.57
25 26 1.342174 ACTGGTACCACCACAAGTACG 59.658 52.381 11.60 0.00 44.79 3.67
26 27 2.762745 CACTGGTACCACCACAAGTAC 58.237 52.381 11.60 0.00 44.79 2.73
27 28 1.071071 GCACTGGTACCACCACAAGTA 59.929 52.381 11.60 0.00 44.79 2.24
28 29 0.179029 GCACTGGTACCACCACAAGT 60.179 55.000 11.60 3.09 44.79 3.16
29 30 0.179032 TGCACTGGTACCACCACAAG 60.179 55.000 11.60 2.35 44.79 3.16
30 31 0.464735 GTGCACTGGTACCACCACAA 60.465 55.000 21.81 3.86 44.79 3.33
31 32 1.147376 GTGCACTGGTACCACCACA 59.853 57.895 21.81 13.65 44.79 4.17
32 33 1.599797 GGTGCACTGGTACCACCAC 60.600 63.158 17.98 17.10 44.79 4.16
37 38 1.449601 CATCCGGTGCACTGGTACC 60.450 63.158 37.57 11.59 45.39 3.34
38 39 4.201951 CATCCGGTGCACTGGTAC 57.798 61.111 37.57 12.01 43.01 3.34
47 48 3.799281 AATGTTTTATGGCATCCGGTG 57.201 42.857 1.65 0.00 0.00 4.94
48 49 4.817318 AAAATGTTTTATGGCATCCGGT 57.183 36.364 1.65 0.00 0.00 5.28
49 50 7.602517 TTTAAAAATGTTTTATGGCATCCGG 57.397 32.000 1.65 0.00 0.00 5.14
84 85 7.328277 TGTTGTGTTAGTGTGCTAGATTTTT 57.672 32.000 0.00 0.00 0.00 1.94
85 86 6.935741 TGTTGTGTTAGTGTGCTAGATTTT 57.064 33.333 0.00 0.00 0.00 1.82
86 87 6.710295 TGATGTTGTGTTAGTGTGCTAGATTT 59.290 34.615 0.00 0.00 0.00 2.17
87 88 6.230472 TGATGTTGTGTTAGTGTGCTAGATT 58.770 36.000 0.00 0.00 0.00 2.40
88 89 5.793817 TGATGTTGTGTTAGTGTGCTAGAT 58.206 37.500 0.00 0.00 0.00 1.98
89 90 5.208463 TGATGTTGTGTTAGTGTGCTAGA 57.792 39.130 0.00 0.00 0.00 2.43
90 91 5.922739 TTGATGTTGTGTTAGTGTGCTAG 57.077 39.130 0.00 0.00 0.00 3.42
91 92 5.762711 ACATTGATGTTGTGTTAGTGTGCTA 59.237 36.000 0.00 0.00 37.90 3.49
92 93 4.580167 ACATTGATGTTGTGTTAGTGTGCT 59.420 37.500 0.00 0.00 37.90 4.40
93 94 4.858935 ACATTGATGTTGTGTTAGTGTGC 58.141 39.130 0.00 0.00 37.90 4.57
94 95 7.022979 CCATACATTGATGTTGTGTTAGTGTG 58.977 38.462 1.46 0.00 41.97 3.82
95 96 6.714810 ACCATACATTGATGTTGTGTTAGTGT 59.285 34.615 1.46 0.00 41.97 3.55
96 97 7.022979 CACCATACATTGATGTTGTGTTAGTG 58.977 38.462 1.46 3.46 41.97 2.74
97 98 6.714810 ACACCATACATTGATGTTGTGTTAGT 59.285 34.615 15.15 6.70 40.55 2.24
98 99 7.144722 ACACCATACATTGATGTTGTGTTAG 57.855 36.000 15.15 6.30 40.55 2.34
99 100 7.517614 AACACCATACATTGATGTTGTGTTA 57.482 32.000 23.16 2.60 44.86 2.41
100 101 6.403866 AACACCATACATTGATGTTGTGTT 57.596 33.333 21.07 21.07 43.61 3.32
101 102 6.488344 TGTAACACCATACATTGATGTTGTGT 59.512 34.615 15.15 15.15 42.82 3.72
102 103 6.907741 TGTAACACCATACATTGATGTTGTG 58.092 36.000 1.46 9.81 41.97 3.33
103 104 7.517614 TTGTAACACCATACATTGATGTTGT 57.482 32.000 1.46 0.00 41.97 3.32
104 105 8.809159 TTTTGTAACACCATACATTGATGTTG 57.191 30.769 1.46 0.00 41.97 3.33
105 106 9.995003 ATTTTTGTAACACCATACATTGATGTT 57.005 25.926 1.46 0.00 41.97 2.71
106 107 9.421806 CATTTTTGTAACACCATACATTGATGT 57.578 29.630 1.84 1.84 44.48 3.06
107 108 9.636879 TCATTTTTGTAACACCATACATTGATG 57.363 29.630 0.00 0.00 35.80 3.07
135 136 9.793252 GCTCATTATCACACTGATGTTAAATTT 57.207 29.630 0.00 0.00 37.70 1.82
136 137 8.408601 GGCTCATTATCACACTGATGTTAAATT 58.591 33.333 0.00 0.00 37.70 1.82
137 138 7.557358 TGGCTCATTATCACACTGATGTTAAAT 59.443 33.333 0.00 0.00 37.70 1.40
138 139 6.883756 TGGCTCATTATCACACTGATGTTAAA 59.116 34.615 0.00 0.00 37.70 1.52
139 140 6.413892 TGGCTCATTATCACACTGATGTTAA 58.586 36.000 0.00 0.00 37.70 2.01
140 141 5.988287 TGGCTCATTATCACACTGATGTTA 58.012 37.500 0.00 0.00 37.70 2.41
141 142 4.847198 TGGCTCATTATCACACTGATGTT 58.153 39.130 0.00 0.00 37.70 2.71
142 143 4.492494 TGGCTCATTATCACACTGATGT 57.508 40.909 0.00 0.00 37.70 3.06
143 144 5.823209 TTTGGCTCATTATCACACTGATG 57.177 39.130 0.00 0.00 37.70 3.07
144 145 6.363065 AGATTTGGCTCATTATCACACTGAT 58.637 36.000 0.00 0.00 40.72 2.90
145 146 5.748402 AGATTTGGCTCATTATCACACTGA 58.252 37.500 0.00 0.00 0.00 3.41
146 147 7.558161 TTAGATTTGGCTCATTATCACACTG 57.442 36.000 0.00 0.00 0.00 3.66
147 148 8.462016 GTTTTAGATTTGGCTCATTATCACACT 58.538 33.333 0.00 0.00 0.00 3.55
148 149 8.462016 AGTTTTAGATTTGGCTCATTATCACAC 58.538 33.333 0.00 0.00 0.00 3.82
149 150 8.579850 AGTTTTAGATTTGGCTCATTATCACA 57.420 30.769 0.00 0.00 0.00 3.58
150 151 8.677300 TGAGTTTTAGATTTGGCTCATTATCAC 58.323 33.333 0.00 0.00 0.00 3.06
151 152 8.806429 TGAGTTTTAGATTTGGCTCATTATCA 57.194 30.769 0.00 0.00 0.00 2.15
152 153 9.727627 CTTGAGTTTTAGATTTGGCTCATTATC 57.272 33.333 0.00 0.00 33.72 1.75
153 154 9.247861 ACTTGAGTTTTAGATTTGGCTCATTAT 57.752 29.630 0.00 0.00 33.72 1.28
154 155 8.635765 ACTTGAGTTTTAGATTTGGCTCATTA 57.364 30.769 0.00 0.00 33.72 1.90
155 156 7.530426 ACTTGAGTTTTAGATTTGGCTCATT 57.470 32.000 0.00 0.00 33.72 2.57
156 157 7.530426 AACTTGAGTTTTAGATTTGGCTCAT 57.470 32.000 0.00 0.00 33.93 2.90
157 158 6.959639 AACTTGAGTTTTAGATTTGGCTCA 57.040 33.333 0.00 0.00 33.93 4.26
158 159 9.914131 AAATAACTTGAGTTTTAGATTTGGCTC 57.086 29.630 1.20 0.00 39.31 4.70
184 185 9.733556 ACAAGTCCAACAATCAATAGTACATAA 57.266 29.630 0.00 0.00 0.00 1.90
185 186 9.378551 GACAAGTCCAACAATCAATAGTACATA 57.621 33.333 0.00 0.00 0.00 2.29
186 187 7.882791 TGACAAGTCCAACAATCAATAGTACAT 59.117 33.333 0.00 0.00 0.00 2.29
187 188 7.220740 TGACAAGTCCAACAATCAATAGTACA 58.779 34.615 0.00 0.00 0.00 2.90
188 189 7.667043 TGACAAGTCCAACAATCAATAGTAC 57.333 36.000 0.00 0.00 0.00 2.73
189 190 8.862325 AATGACAAGTCCAACAATCAATAGTA 57.138 30.769 0.00 0.00 0.00 1.82
190 191 7.765695 AATGACAAGTCCAACAATCAATAGT 57.234 32.000 0.00 0.00 0.00 2.12
191 192 9.480053 AAAAATGACAAGTCCAACAATCAATAG 57.520 29.630 0.00 0.00 0.00 1.73
192 193 9.258826 CAAAAATGACAAGTCCAACAATCAATA 57.741 29.630 0.00 0.00 0.00 1.90
193 194 7.769970 ACAAAAATGACAAGTCCAACAATCAAT 59.230 29.630 0.00 0.00 0.00 2.57
194 195 7.102346 ACAAAAATGACAAGTCCAACAATCAA 58.898 30.769 0.00 0.00 0.00 2.57
195 196 6.638610 ACAAAAATGACAAGTCCAACAATCA 58.361 32.000 0.00 0.00 0.00 2.57
196 197 7.538303 AACAAAAATGACAAGTCCAACAATC 57.462 32.000 0.00 0.00 0.00 2.67
197 198 7.920160 AAACAAAAATGACAAGTCCAACAAT 57.080 28.000 0.00 0.00 0.00 2.71
198 199 7.736447 AAAACAAAAATGACAAGTCCAACAA 57.264 28.000 0.00 0.00 0.00 2.83
199 200 7.736447 AAAAACAAAAATGACAAGTCCAACA 57.264 28.000 0.00 0.00 0.00 3.33
200 201 9.145865 TCTAAAAACAAAAATGACAAGTCCAAC 57.854 29.630 0.00 0.00 0.00 3.77
201 202 9.145865 GTCTAAAAACAAAAATGACAAGTCCAA 57.854 29.630 0.00 0.00 0.00 3.53
202 203 8.527810 AGTCTAAAAACAAAAATGACAAGTCCA 58.472 29.630 0.00 0.00 0.00 4.02
203 204 8.926715 AGTCTAAAAACAAAAATGACAAGTCC 57.073 30.769 0.00 0.00 0.00 3.85
221 222 9.832445 AGTCAAAACTCAGAACATAAGTCTAAA 57.168 29.630 0.00 0.00 0.00 1.85
222 223 9.832445 AAGTCAAAACTCAGAACATAAGTCTAA 57.168 29.630 0.00 0.00 33.48 2.10
223 224 9.261180 CAAGTCAAAACTCAGAACATAAGTCTA 57.739 33.333 0.00 0.00 33.48 2.59
224 225 7.987458 TCAAGTCAAAACTCAGAACATAAGTCT 59.013 33.333 0.00 0.00 33.48 3.24
225 226 8.142994 TCAAGTCAAAACTCAGAACATAAGTC 57.857 34.615 0.00 0.00 33.48 3.01
226 227 8.506168 TTCAAGTCAAAACTCAGAACATAAGT 57.494 30.769 0.00 0.00 33.48 2.24
227 228 9.956720 ATTTCAAGTCAAAACTCAGAACATAAG 57.043 29.630 0.00 0.00 33.48 1.73
230 231 9.657419 AAAATTTCAAGTCAAAACTCAGAACAT 57.343 25.926 0.00 0.00 33.48 2.71
234 235 9.748708 CCATAAAATTTCAAGTCAAAACTCAGA 57.251 29.630 0.00 0.00 33.48 3.27
235 236 8.490355 GCCATAAAATTTCAAGTCAAAACTCAG 58.510 33.333 0.00 0.00 33.48 3.35
236 237 7.984050 TGCCATAAAATTTCAAGTCAAAACTCA 59.016 29.630 0.00 0.00 33.48 3.41
237 238 8.364129 TGCCATAAAATTTCAAGTCAAAACTC 57.636 30.769 0.00 0.00 33.48 3.01
238 239 8.611757 GTTGCCATAAAATTTCAAGTCAAAACT 58.388 29.630 0.00 0.00 37.32 2.66
239 240 7.855409 GGTTGCCATAAAATTTCAAGTCAAAAC 59.145 33.333 0.00 0.00 0.00 2.43
240 241 7.554118 TGGTTGCCATAAAATTTCAAGTCAAAA 59.446 29.630 0.00 0.00 0.00 2.44
241 242 7.050377 TGGTTGCCATAAAATTTCAAGTCAAA 58.950 30.769 0.00 0.00 0.00 2.69
242 243 6.586344 TGGTTGCCATAAAATTTCAAGTCAA 58.414 32.000 0.00 0.00 0.00 3.18
243 244 6.166984 TGGTTGCCATAAAATTTCAAGTCA 57.833 33.333 0.00 0.00 0.00 3.41
244 245 6.481644 TGTTGGTTGCCATAAAATTTCAAGTC 59.518 34.615 0.00 0.00 31.53 3.01
245 246 6.352516 TGTTGGTTGCCATAAAATTTCAAGT 58.647 32.000 0.00 0.00 31.53 3.16
246 247 6.857777 TGTTGGTTGCCATAAAATTTCAAG 57.142 33.333 0.00 0.00 31.53 3.02
247 248 7.500227 TCAATGTTGGTTGCCATAAAATTTCAA 59.500 29.630 0.00 0.00 31.53 2.69
248 249 6.994496 TCAATGTTGGTTGCCATAAAATTTCA 59.006 30.769 0.00 0.00 31.53 2.69
249 250 7.432350 TCAATGTTGGTTGCCATAAAATTTC 57.568 32.000 0.00 0.00 31.53 2.17
250 251 7.447853 ACATCAATGTTGGTTGCCATAAAATTT 59.552 29.630 0.00 0.00 37.90 1.82
251 252 6.941436 ACATCAATGTTGGTTGCCATAAAATT 59.059 30.769 0.00 0.00 37.90 1.82
252 253 6.474630 ACATCAATGTTGGTTGCCATAAAAT 58.525 32.000 0.00 0.00 37.90 1.82
253 254 5.862845 ACATCAATGTTGGTTGCCATAAAA 58.137 33.333 0.00 0.00 37.90 1.52
254 255 5.480642 ACATCAATGTTGGTTGCCATAAA 57.519 34.783 0.00 0.00 37.90 1.40
267 268 4.038282 AGCACATTCACACAACATCAATGT 59.962 37.500 0.00 0.00 44.20 2.71
268 269 4.552355 AGCACATTCACACAACATCAATG 58.448 39.130 0.00 0.00 0.00 2.82
269 270 4.859304 AGCACATTCACACAACATCAAT 57.141 36.364 0.00 0.00 0.00 2.57
270 271 5.764487 TTAGCACATTCACACAACATCAA 57.236 34.783 0.00 0.00 0.00 2.57
271 272 5.764487 TTTAGCACATTCACACAACATCA 57.236 34.783 0.00 0.00 0.00 3.07
272 273 6.437928 TCTTTTAGCACATTCACACAACATC 58.562 36.000 0.00 0.00 0.00 3.06
273 274 6.389830 TCTTTTAGCACATTCACACAACAT 57.610 33.333 0.00 0.00 0.00 2.71
274 275 5.826601 TCTTTTAGCACATTCACACAACA 57.173 34.783 0.00 0.00 0.00 3.33
275 276 7.434897 TGATTTCTTTTAGCACATTCACACAAC 59.565 33.333 0.00 0.00 0.00 3.32
276 277 7.487484 TGATTTCTTTTAGCACATTCACACAA 58.513 30.769 0.00 0.00 0.00 3.33
277 278 7.013178 TCTGATTTCTTTTAGCACATTCACACA 59.987 33.333 0.00 0.00 0.00 3.72
278 279 7.362662 TCTGATTTCTTTTAGCACATTCACAC 58.637 34.615 0.00 0.00 0.00 3.82
279 280 7.509141 TCTGATTTCTTTTAGCACATTCACA 57.491 32.000 0.00 0.00 0.00 3.58
280 281 8.976986 ATTCTGATTTCTTTTAGCACATTCAC 57.023 30.769 0.00 0.00 0.00 3.18
281 282 9.985730 AAATTCTGATTTCTTTTAGCACATTCA 57.014 25.926 0.00 0.00 29.53 2.57
306 307 6.462949 CGTTGCGCTTTTAAAATGTTCAAAAA 59.537 30.769 9.73 0.00 0.00 1.94
307 308 5.954349 CGTTGCGCTTTTAAAATGTTCAAAA 59.046 32.000 9.73 0.00 0.00 2.44
308 309 5.062308 ACGTTGCGCTTTTAAAATGTTCAAA 59.938 32.000 9.73 0.00 0.00 2.69
309 310 4.563184 ACGTTGCGCTTTTAAAATGTTCAA 59.437 33.333 9.73 1.83 0.00 2.69
310 311 4.027295 CACGTTGCGCTTTTAAAATGTTCA 60.027 37.500 9.73 0.00 0.00 3.18
311 312 4.205385 TCACGTTGCGCTTTTAAAATGTTC 59.795 37.500 9.73 0.00 0.00 3.18
312 313 4.106197 TCACGTTGCGCTTTTAAAATGTT 58.894 34.783 9.73 0.00 0.00 2.71
313 314 3.696898 TCACGTTGCGCTTTTAAAATGT 58.303 36.364 9.73 1.45 0.00 2.71
314 315 3.728718 ACTCACGTTGCGCTTTTAAAATG 59.271 39.130 9.73 0.72 0.00 2.32
315 316 3.959943 ACTCACGTTGCGCTTTTAAAAT 58.040 36.364 9.73 0.00 0.00 1.82
316 317 3.408288 ACTCACGTTGCGCTTTTAAAA 57.592 38.095 9.73 0.00 0.00 1.52
317 318 3.181509 TGAACTCACGTTGCGCTTTTAAA 60.182 39.130 9.73 0.00 32.39 1.52
318 319 2.352034 TGAACTCACGTTGCGCTTTTAA 59.648 40.909 9.73 0.00 32.39 1.52
319 320 1.934525 TGAACTCACGTTGCGCTTTTA 59.065 42.857 9.73 0.00 32.39 1.52
320 321 0.730265 TGAACTCACGTTGCGCTTTT 59.270 45.000 9.73 0.00 32.39 2.27
321 322 0.304705 CTGAACTCACGTTGCGCTTT 59.695 50.000 9.73 0.00 32.39 3.51
322 323 0.810031 ACTGAACTCACGTTGCGCTT 60.810 50.000 9.73 0.00 32.39 4.68
323 324 1.227263 ACTGAACTCACGTTGCGCT 60.227 52.632 9.73 0.00 32.39 5.92
324 325 1.083401 CACTGAACTCACGTTGCGC 60.083 57.895 0.00 0.00 32.39 6.09
325 326 1.083401 GCACTGAACTCACGTTGCG 60.083 57.895 0.00 0.00 32.39 4.85
326 327 0.316196 GTGCACTGAACTCACGTTGC 60.316 55.000 10.32 0.00 32.39 4.17
327 328 0.304705 GGTGCACTGAACTCACGTTG 59.695 55.000 17.98 0.00 32.39 4.10
328 329 1.151777 CGGTGCACTGAACTCACGTT 61.152 55.000 21.59 0.00 35.68 3.99
329 330 1.591594 CGGTGCACTGAACTCACGT 60.592 57.895 21.59 0.00 0.00 4.49
330 331 2.310233 CCGGTGCACTGAACTCACG 61.310 63.158 27.46 13.64 0.00 4.35
331 332 0.032952 TACCGGTGCACTGAACTCAC 59.967 55.000 27.46 0.98 0.00 3.51
332 333 0.317160 CTACCGGTGCACTGAACTCA 59.683 55.000 27.46 5.93 0.00 3.41
333 334 1.014564 GCTACCGGTGCACTGAACTC 61.015 60.000 27.46 9.43 0.00 3.01
334 335 1.004918 GCTACCGGTGCACTGAACT 60.005 57.895 27.46 11.05 0.00 3.01
335 336 1.301401 TGCTACCGGTGCACTGAAC 60.301 57.895 27.46 12.88 35.31 3.18
336 337 3.143338 TGCTACCGGTGCACTGAA 58.857 55.556 27.46 13.33 35.31 3.02
341 342 3.108288 TTGTGGTGCTACCGGTGCA 62.108 57.895 19.93 21.51 42.58 4.57
342 343 2.281208 TTGTGGTGCTACCGGTGC 60.281 61.111 19.93 19.04 42.58 5.01
343 344 2.325082 GCTTGTGGTGCTACCGGTG 61.325 63.158 19.93 8.61 42.58 4.94
344 345 2.032071 GCTTGTGGTGCTACCGGT 59.968 61.111 13.98 13.98 42.58 5.28
345 346 1.741770 GAGCTTGTGGTGCTACCGG 60.742 63.158 0.00 0.00 42.58 5.28
346 347 1.741770 GGAGCTTGTGGTGCTACCG 60.742 63.158 0.00 0.00 42.58 4.02
347 348 1.741770 CGGAGCTTGTGGTGCTACC 60.742 63.158 0.00 0.00 41.30 3.18
348 349 0.108138 ATCGGAGCTTGTGGTGCTAC 60.108 55.000 0.00 0.00 41.30 3.58
349 350 0.108186 CATCGGAGCTTGTGGTGCTA 60.108 55.000 0.00 0.00 41.30 3.49
350 351 1.376424 CATCGGAGCTTGTGGTGCT 60.376 57.895 0.00 0.00 44.24 4.40
351 352 3.044059 GCATCGGAGCTTGTGGTGC 62.044 63.158 3.71 3.71 0.00 5.01
352 353 1.672030 TGCATCGGAGCTTGTGGTG 60.672 57.895 0.00 0.00 34.99 4.17
353 354 1.672356 GTGCATCGGAGCTTGTGGT 60.672 57.895 0.00 0.00 34.99 4.16
354 355 2.401766 GGTGCATCGGAGCTTGTGG 61.402 63.158 0.00 0.00 34.99 4.17
355 356 1.236616 TTGGTGCATCGGAGCTTGTG 61.237 55.000 0.00 0.00 34.99 3.33
356 357 0.537143 TTTGGTGCATCGGAGCTTGT 60.537 50.000 0.00 0.00 34.99 3.16
357 358 0.813184 ATTTGGTGCATCGGAGCTTG 59.187 50.000 0.00 0.00 34.99 4.01
358 359 2.418368 TATTTGGTGCATCGGAGCTT 57.582 45.000 0.00 0.00 34.99 3.74
359 360 2.645838 ATATTTGGTGCATCGGAGCT 57.354 45.000 0.00 0.00 34.99 4.09
360 361 3.715628 AAATATTTGGTGCATCGGAGC 57.284 42.857 0.00 0.00 0.00 4.70
361 362 4.499696 GGGAAAATATTTGGTGCATCGGAG 60.500 45.833 0.39 0.00 0.00 4.63
362 363 3.383185 GGGAAAATATTTGGTGCATCGGA 59.617 43.478 0.39 0.00 0.00 4.55
363 364 3.384467 AGGGAAAATATTTGGTGCATCGG 59.616 43.478 0.39 0.00 0.00 4.18
364 365 4.654091 AGGGAAAATATTTGGTGCATCG 57.346 40.909 0.39 0.00 0.00 3.84
365 366 5.976458 TGAAGGGAAAATATTTGGTGCATC 58.024 37.500 0.39 0.00 0.00 3.91
366 367 6.564557 ATGAAGGGAAAATATTTGGTGCAT 57.435 33.333 0.39 0.00 0.00 3.96
367 368 6.171921 CAATGAAGGGAAAATATTTGGTGCA 58.828 36.000 0.39 0.00 0.00 4.57
368 369 6.172630 ACAATGAAGGGAAAATATTTGGTGC 58.827 36.000 0.39 0.00 0.00 5.01
369 370 7.361116 GCAACAATGAAGGGAAAATATTTGGTG 60.361 37.037 0.39 0.00 0.00 4.17
370 371 6.654582 GCAACAATGAAGGGAAAATATTTGGT 59.345 34.615 0.39 0.00 0.00 3.67
371 372 6.093909 GGCAACAATGAAGGGAAAATATTTGG 59.906 38.462 0.39 0.00 0.00 3.28
372 373 6.093909 GGGCAACAATGAAGGGAAAATATTTG 59.906 38.462 0.39 0.00 39.74 2.32
373 374 6.012596 AGGGCAACAATGAAGGGAAAATATTT 60.013 34.615 0.00 0.00 39.74 1.40
374 375 5.488561 AGGGCAACAATGAAGGGAAAATATT 59.511 36.000 0.00 0.00 39.74 1.28
375 376 5.032170 AGGGCAACAATGAAGGGAAAATAT 58.968 37.500 0.00 0.00 39.74 1.28
376 377 4.222588 CAGGGCAACAATGAAGGGAAAATA 59.777 41.667 0.00 0.00 39.74 1.40
377 378 3.008266 CAGGGCAACAATGAAGGGAAAAT 59.992 43.478 0.00 0.00 39.74 1.82
378 379 2.368221 CAGGGCAACAATGAAGGGAAAA 59.632 45.455 0.00 0.00 39.74 2.29
379 380 1.969923 CAGGGCAACAATGAAGGGAAA 59.030 47.619 0.00 0.00 39.74 3.13
380 381 1.631405 CAGGGCAACAATGAAGGGAA 58.369 50.000 0.00 0.00 39.74 3.97
381 382 0.251742 CCAGGGCAACAATGAAGGGA 60.252 55.000 0.00 0.00 39.74 4.20
382 383 0.542702 ACCAGGGCAACAATGAAGGG 60.543 55.000 0.00 0.00 39.74 3.95
383 384 0.604578 CACCAGGGCAACAATGAAGG 59.395 55.000 0.00 0.00 39.74 3.46
384 385 1.270550 GACACCAGGGCAACAATGAAG 59.729 52.381 0.00 0.00 39.74 3.02
430 585 7.907045 CAGAAAACGAGGACATCTTATTCATTG 59.093 37.037 0.00 0.00 0.00 2.82
441 596 7.972832 TTATAAACACAGAAAACGAGGACAT 57.027 32.000 0.00 0.00 0.00 3.06
450 605 9.877178 ACCAACAACATTTATAAACACAGAAAA 57.123 25.926 0.00 0.00 0.00 2.29
584 740 8.610369 TCACATCTAGATATGTCCTAGACAGAT 58.390 37.037 10.72 4.62 45.40 2.90
585 741 7.880713 GTCACATCTAGATATGTCCTAGACAGA 59.119 40.741 10.72 0.00 46.04 3.41
586 742 7.663493 TGTCACATCTAGATATGTCCTAGACAG 59.337 40.741 10.72 0.00 46.04 3.51
587 743 7.518188 TGTCACATCTAGATATGTCCTAGACA 58.482 38.462 10.72 10.80 46.90 3.41
588 744 7.987750 TGTCACATCTAGATATGTCCTAGAC 57.012 40.000 10.72 8.70 43.57 2.59
589 745 9.898152 CTATGTCACATCTAGATATGTCCTAGA 57.102 37.037 10.72 0.00 44.50 2.43
590 746 9.679661 ACTATGTCACATCTAGATATGTCCTAG 57.320 37.037 10.72 12.93 38.01 3.02
592 748 8.948401 AACTATGTCACATCTAGATATGTCCT 57.052 34.615 10.72 1.66 38.01 3.85
611 767 6.447162 TCGGCTTAGATGTGACATAACTATG 58.553 40.000 0.00 0.92 39.55 2.23
612 768 6.650427 TCGGCTTAGATGTGACATAACTAT 57.350 37.500 0.00 0.00 0.00 2.12
613 769 6.447162 CATCGGCTTAGATGTGACATAACTA 58.553 40.000 0.00 0.00 42.15 2.24
614 770 5.292765 CATCGGCTTAGATGTGACATAACT 58.707 41.667 0.00 0.00 42.15 2.24
615 771 5.582439 CATCGGCTTAGATGTGACATAAC 57.418 43.478 0.00 0.00 42.15 1.89
625 781 7.336931 ACAAATAAAGTGAACATCGGCTTAGAT 59.663 33.333 0.00 0.00 0.00 1.98
626 782 6.653320 ACAAATAAAGTGAACATCGGCTTAGA 59.347 34.615 0.00 0.00 0.00 2.10
627 783 6.742718 CACAAATAAAGTGAACATCGGCTTAG 59.257 38.462 0.00 0.00 39.30 2.18
628 784 6.607689 CACAAATAAAGTGAACATCGGCTTA 58.392 36.000 0.00 0.00 39.30 3.09
629 785 5.460646 CACAAATAAAGTGAACATCGGCTT 58.539 37.500 0.00 0.00 39.30 4.35
630 786 4.615912 GCACAAATAAAGTGAACATCGGCT 60.616 41.667 0.00 0.00 39.30 5.52
631 787 3.608073 GCACAAATAAAGTGAACATCGGC 59.392 43.478 0.00 0.00 39.30 5.54
632 788 5.046910 AGCACAAATAAAGTGAACATCGG 57.953 39.130 0.00 0.00 39.30 4.18
633 789 6.991485 AAAGCACAAATAAAGTGAACATCG 57.009 33.333 0.00 0.00 39.30 3.84
634 790 9.410556 ACATAAAGCACAAATAAAGTGAACATC 57.589 29.630 0.00 0.00 39.30 3.06
635 791 9.762933 AACATAAAGCACAAATAAAGTGAACAT 57.237 25.926 0.00 0.00 39.30 2.71
636 792 9.593134 AAACATAAAGCACAAATAAAGTGAACA 57.407 25.926 0.00 0.00 39.30 3.18
646 802 9.905171 ACAAAAACAAAAACATAAAGCACAAAT 57.095 22.222 0.00 0.00 0.00 2.32
647 803 9.736023 AACAAAAACAAAAACATAAAGCACAAA 57.264 22.222 0.00 0.00 0.00 2.83
648 804 9.736023 AAACAAAAACAAAAACATAAAGCACAA 57.264 22.222 0.00 0.00 0.00 3.33
649 805 9.736023 AAAACAAAAACAAAAACATAAAGCACA 57.264 22.222 0.00 0.00 0.00 4.57
683 839 8.281194 CACAAATACATAATGCAGCAACAAAAA 58.719 29.630 0.00 0.00 0.00 1.94
684 840 7.095313 CCACAAATACATAATGCAGCAACAAAA 60.095 33.333 0.00 0.00 0.00 2.44
685 841 6.368243 CCACAAATACATAATGCAGCAACAAA 59.632 34.615 0.00 0.00 0.00 2.83
686 842 5.868258 CCACAAATACATAATGCAGCAACAA 59.132 36.000 0.00 0.00 0.00 2.83
687 843 5.409211 CCACAAATACATAATGCAGCAACA 58.591 37.500 0.00 0.00 0.00 3.33
688 844 4.805192 CCCACAAATACATAATGCAGCAAC 59.195 41.667 0.00 0.00 0.00 4.17
689 845 4.708909 TCCCACAAATACATAATGCAGCAA 59.291 37.500 0.00 0.00 0.00 3.91
690 846 4.276642 TCCCACAAATACATAATGCAGCA 58.723 39.130 0.00 0.00 0.00 4.41
691 847 4.339247 ACTCCCACAAATACATAATGCAGC 59.661 41.667 0.00 0.00 0.00 5.25
692 848 6.455360 AACTCCCACAAATACATAATGCAG 57.545 37.500 0.00 0.00 0.00 4.41
693 849 6.849085 AAACTCCCACAAATACATAATGCA 57.151 33.333 0.00 0.00 0.00 3.96
694 850 8.220755 TCTAAACTCCCACAAATACATAATGC 57.779 34.615 0.00 0.00 0.00 3.56
696 852 9.920946 ACATCTAAACTCCCACAAATACATAAT 57.079 29.630 0.00 0.00 0.00 1.28
697 853 9.173021 CACATCTAAACTCCCACAAATACATAA 57.827 33.333 0.00 0.00 0.00 1.90
698 854 8.544622 TCACATCTAAACTCCCACAAATACATA 58.455 33.333 0.00 0.00 0.00 2.29
699 855 7.336931 GTCACATCTAAACTCCCACAAATACAT 59.663 37.037 0.00 0.00 0.00 2.29
700 856 6.653320 GTCACATCTAAACTCCCACAAATACA 59.347 38.462 0.00 0.00 0.00 2.29
701 857 6.653320 TGTCACATCTAAACTCCCACAAATAC 59.347 38.462 0.00 0.00 0.00 1.89
702 858 6.774673 TGTCACATCTAAACTCCCACAAATA 58.225 36.000 0.00 0.00 0.00 1.40
703 859 5.630121 TGTCACATCTAAACTCCCACAAAT 58.370 37.500 0.00 0.00 0.00 2.32
704 860 5.042463 TGTCACATCTAAACTCCCACAAA 57.958 39.130 0.00 0.00 0.00 2.83
705 861 4.698201 TGTCACATCTAAACTCCCACAA 57.302 40.909 0.00 0.00 0.00 3.33
706 862 4.532126 AGATGTCACATCTAAACTCCCACA 59.468 41.667 19.29 0.00 0.00 4.17
707 863 5.091261 AGATGTCACATCTAAACTCCCAC 57.909 43.478 19.29 0.00 0.00 4.61
708 864 5.762179 AAGATGTCACATCTAAACTCCCA 57.238 39.130 20.94 0.00 0.00 4.37
709 865 6.173339 TCAAAGATGTCACATCTAAACTCCC 58.827 40.000 20.94 0.00 0.00 4.30
710 866 7.672983 TTCAAAGATGTCACATCTAAACTCC 57.327 36.000 20.94 0.00 0.00 3.85
711 867 9.950680 TTTTTCAAAGATGTCACATCTAAACTC 57.049 29.630 20.94 0.00 0.00 3.01
712 868 9.736023 GTTTTTCAAAGATGTCACATCTAAACT 57.264 29.630 24.03 9.14 0.00 2.66
713 869 9.515020 TGTTTTTCAAAGATGTCACATCTAAAC 57.485 29.630 24.32 24.32 0.00 2.01
715 871 9.897744 GATGTTTTTCAAAGATGTCACATCTAA 57.102 29.630 20.94 8.96 0.00 2.10
716 872 9.288576 AGATGTTTTTCAAAGATGTCACATCTA 57.711 29.630 20.94 2.46 38.80 1.98
717 873 8.174733 AGATGTTTTTCAAAGATGTCACATCT 57.825 30.769 15.05 15.05 36.69 2.90
718 874 9.552114 CTAGATGTTTTTCAAAGATGTCACATC 57.448 33.333 10.05 10.05 0.00 3.06
719 875 9.288576 TCTAGATGTTTTTCAAAGATGTCACAT 57.711 29.630 0.00 0.00 0.00 3.21
720 876 8.675705 TCTAGATGTTTTTCAAAGATGTCACA 57.324 30.769 0.00 0.00 0.00 3.58
721 877 9.552114 CATCTAGATGTTTTTCAAAGATGTCAC 57.448 33.333 22.42 0.00 37.25 3.67
738 894 9.376075 ACAGTTTGACTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
739 895 9.950496 AACAGTTTGACTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 32.26 1.98
740 896 9.778741 AAACAGTTTGACTAATTCACATCTAGA 57.221 29.630 0.00 0.00 32.26 2.43
770 926 7.661027 CCATCCGGGCAAATATTTGAAATAATT 59.339 33.333 28.33 7.09 40.55 1.40
771 927 7.160726 CCATCCGGGCAAATATTTGAAATAAT 58.839 34.615 28.33 13.87 40.55 1.28
790 948 2.313717 TTACTCGCGTCGACCATCCG 62.314 60.000 10.58 8.01 0.00 4.18
791 949 0.591741 CTTACTCGCGTCGACCATCC 60.592 60.000 10.58 0.00 0.00 3.51
792 950 1.201098 GCTTACTCGCGTCGACCATC 61.201 60.000 10.58 0.00 0.00 3.51
793 951 1.226603 GCTTACTCGCGTCGACCAT 60.227 57.895 10.58 0.00 0.00 3.55
794 952 2.132517 TTGCTTACTCGCGTCGACCA 62.133 55.000 10.58 0.00 0.00 4.02
795 953 1.005294 TTTGCTTACTCGCGTCGACC 61.005 55.000 10.58 1.77 0.00 4.79
796 954 0.362512 CTTTGCTTACTCGCGTCGAC 59.637 55.000 5.77 5.18 0.00 4.20
797 955 0.731514 CCTTTGCTTACTCGCGTCGA 60.732 55.000 5.77 2.20 0.00 4.20
798 956 1.702299 CCTTTGCTTACTCGCGTCG 59.298 57.895 5.77 0.58 0.00 5.12
799 957 1.420312 GCCTTTGCTTACTCGCGTC 59.580 57.895 5.77 0.00 33.53 5.19
800 958 2.380410 CGCCTTTGCTTACTCGCGT 61.380 57.895 5.77 0.00 35.15 6.01
801 959 2.279937 GACGCCTTTGCTTACTCGCG 62.280 60.000 0.00 0.00 44.78 5.87
831 989 1.994507 CAGGCCTGCTCCTCCTCTT 60.995 63.158 22.33 0.00 33.25 2.85
919 1560 1.475280 GGAAACGGAATTTGGGGCTAC 59.525 52.381 0.00 0.00 0.00 3.58
932 1573 2.202427 GGCGCGATTTGGAAACGG 60.202 61.111 12.10 0.00 0.00 4.44
956 1597 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
957 1598 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
958 1599 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
959 1600 2.551413 GGGGATGGGATGGGATGGG 61.551 68.421 0.00 0.00 0.00 4.00
987 1628 3.881688 CCATGTCCATGAAGAGATCCAAC 59.118 47.826 8.82 0.00 41.20 3.77
1000 1641 2.599597 GGAGGCAGCCATGTCCAT 59.400 61.111 15.80 0.00 0.00 3.41
1001 1642 4.100084 CGGAGGCAGCCATGTCCA 62.100 66.667 15.80 0.00 0.00 4.02
1206 1888 2.033141 CCAGGGCAGTGGACACAG 59.967 66.667 5.14 0.00 40.44 3.66
1611 2330 0.033796 TCTTCCCCGTCTCGTGGTAT 60.034 55.000 0.00 0.00 0.00 2.73
1839 2558 4.855340 ACCGGAATTCCAACTCAACATAT 58.145 39.130 24.09 0.00 35.14 1.78
2046 2771 1.676635 GCATGGCTCCAAGCTGACA 60.677 57.895 8.70 0.00 41.99 3.58
2104 2832 4.010349 GGGTATCCCACTTGAAGTTCTTG 58.990 47.826 4.17 0.00 44.65 3.02
2446 3174 6.648879 AACTTGCTAAGCTCTAGATCCTAG 57.351 41.667 0.00 0.00 0.00 3.02
2491 3219 4.886489 TGAATCACACTGTCATCAAACCAA 59.114 37.500 0.00 0.00 0.00 3.67
2495 3223 5.769162 TCCATTGAATCACACTGTCATCAAA 59.231 36.000 5.40 0.00 31.37 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.