Multiple sequence alignment - TraesCS5B01G060900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G060900 chr5B 100.000 2584 0 0 1 2584 68212687 68215270 0.000000e+00 4772.0
1 TraesCS5B01G060900 chr5B 94.107 577 33 1 2008 2584 430716487 430717062 0.000000e+00 876.0
2 TraesCS5B01G060900 chr5B 92.958 71 4 1 1589 1659 311526660 311526591 4.550000e-18 102.0
3 TraesCS5B01G060900 chr4A 93.569 1586 101 1 1 1585 590495833 590497418 0.000000e+00 2362.0
4 TraesCS5B01G060900 chr4A 90.164 183 18 0 1802 1984 636219002 636218820 3.320000e-59 239.0
5 TraesCS5B01G060900 chr1A 93.099 1594 108 2 1 1593 541456058 541457650 0.000000e+00 2333.0
6 TraesCS5B01G060900 chr3B 90.984 1586 141 2 1 1585 13953979 13952395 0.000000e+00 2135.0
7 TraesCS5B01G060900 chr3B 90.629 1590 146 3 1 1589 783794829 783793242 0.000000e+00 2108.0
8 TraesCS5B01G060900 chr3B 94.251 574 32 1 2011 2584 176507030 176506458 0.000000e+00 876.0
9 TraesCS5B01G060900 chr1B 90.560 1589 148 2 1 1588 104728654 104727067 0.000000e+00 2102.0
10 TraesCS5B01G060900 chr1B 94.281 577 32 1 2008 2584 30835420 30835995 0.000000e+00 881.0
11 TraesCS5B01G060900 chr1B 94.425 574 31 1 2011 2584 419250257 419249685 0.000000e+00 881.0
12 TraesCS5B01G060900 chr1B 93.243 74 4 1 1586 1659 340360927 340360855 9.780000e-20 108.0
13 TraesCS5B01G060900 chr7B 90.353 1586 145 3 1 1585 58653224 58654802 0.000000e+00 2074.0
14 TraesCS5B01G060900 chr7B 94.627 577 30 1 2008 2584 81583411 81583986 0.000000e+00 893.0
15 TraesCS5B01G060900 chr7B 90.000 190 19 0 1802 1991 292830135 292829946 1.990000e-61 246.0
16 TraesCS5B01G060900 chr7B 89.119 193 20 1 1798 1990 748956982 748957173 3.320000e-59 239.0
17 TraesCS5B01G060900 chr1D 90.107 1587 154 3 1 1585 432332116 432333701 0.000000e+00 2058.0
18 TraesCS5B01G060900 chr6D 89.861 1588 157 4 1 1585 433660998 433659412 0.000000e+00 2037.0
19 TraesCS5B01G060900 chr6D 84.615 156 18 3 1586 1741 281926917 281927066 1.600000e-32 150.0
20 TraesCS5B01G060900 chr7D 89.761 1592 160 3 1 1590 14684474 14686064 0.000000e+00 2034.0
21 TraesCS5B01G060900 chr7D 90.526 190 18 0 1802 1991 356898446 356898257 4.270000e-63 252.0
22 TraesCS5B01G060900 chr4B 94.454 577 31 1 2008 2584 82145612 82146187 0.000000e+00 887.0
23 TraesCS5B01G060900 chr4B 94.251 574 32 1 2011 2584 6116268 6115696 0.000000e+00 876.0
24 TraesCS5B01G060900 chr4B 94.251 574 32 1 2011 2584 6127523 6126951 0.000000e+00 876.0
25 TraesCS5B01G060900 chr3D 94.107 577 33 1 2008 2584 481562019 481562594 0.000000e+00 876.0
26 TraesCS5B01G060900 chr3D 89.610 77 7 1 1585 1661 231507854 231507929 2.120000e-16 97.1
27 TraesCS5B01G060900 chr2D 93.237 414 22 6 1586 1995 5370716 5370305 2.840000e-169 604.0
28 TraesCS5B01G060900 chr7A 90.625 192 17 1 1798 1988 386356101 386356292 1.190000e-63 254.0
29 TraesCS5B01G060900 chr6B 90.155 193 18 1 1798 1990 542383036 542382845 1.540000e-62 250.0
30 TraesCS5B01G060900 chr6B 87.586 145 13 2 1597 1741 364744727 364744588 2.060000e-36 163.0
31 TraesCS5B01G060900 chr6B 85.806 155 16 4 1589 1742 218229402 218229253 2.660000e-35 159.0
32 TraesCS5B01G060900 chrUn 88.601 193 20 2 1798 1990 216084479 216084289 1.550000e-57 233.0
33 TraesCS5B01G060900 chrUn 88.601 193 20 2 1798 1990 244197620 244197810 1.550000e-57 233.0
34 TraesCS5B01G060900 chr2B 94.118 68 3 1 1586 1653 661051602 661051668 4.550000e-18 102.0
35 TraesCS5B01G060900 chr6A 91.549 71 5 1 1589 1659 169231492 169231423 2.120000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G060900 chr5B 68212687 68215270 2583 False 4772 4772 100.000 1 2584 1 chr5B.!!$F1 2583
1 TraesCS5B01G060900 chr5B 430716487 430717062 575 False 876 876 94.107 2008 2584 1 chr5B.!!$F2 576
2 TraesCS5B01G060900 chr4A 590495833 590497418 1585 False 2362 2362 93.569 1 1585 1 chr4A.!!$F1 1584
3 TraesCS5B01G060900 chr1A 541456058 541457650 1592 False 2333 2333 93.099 1 1593 1 chr1A.!!$F1 1592
4 TraesCS5B01G060900 chr3B 13952395 13953979 1584 True 2135 2135 90.984 1 1585 1 chr3B.!!$R1 1584
5 TraesCS5B01G060900 chr3B 783793242 783794829 1587 True 2108 2108 90.629 1 1589 1 chr3B.!!$R3 1588
6 TraesCS5B01G060900 chr3B 176506458 176507030 572 True 876 876 94.251 2011 2584 1 chr3B.!!$R2 573
7 TraesCS5B01G060900 chr1B 104727067 104728654 1587 True 2102 2102 90.560 1 1588 1 chr1B.!!$R1 1587
8 TraesCS5B01G060900 chr1B 30835420 30835995 575 False 881 881 94.281 2008 2584 1 chr1B.!!$F1 576
9 TraesCS5B01G060900 chr1B 419249685 419250257 572 True 881 881 94.425 2011 2584 1 chr1B.!!$R3 573
10 TraesCS5B01G060900 chr7B 58653224 58654802 1578 False 2074 2074 90.353 1 1585 1 chr7B.!!$F1 1584
11 TraesCS5B01G060900 chr7B 81583411 81583986 575 False 893 893 94.627 2008 2584 1 chr7B.!!$F2 576
12 TraesCS5B01G060900 chr1D 432332116 432333701 1585 False 2058 2058 90.107 1 1585 1 chr1D.!!$F1 1584
13 TraesCS5B01G060900 chr6D 433659412 433660998 1586 True 2037 2037 89.861 1 1585 1 chr6D.!!$R1 1584
14 TraesCS5B01G060900 chr7D 14684474 14686064 1590 False 2034 2034 89.761 1 1590 1 chr7D.!!$F1 1589
15 TraesCS5B01G060900 chr4B 82145612 82146187 575 False 887 887 94.454 2008 2584 1 chr4B.!!$F1 576
16 TraesCS5B01G060900 chr4B 6115696 6116268 572 True 876 876 94.251 2011 2584 1 chr4B.!!$R1 573
17 TraesCS5B01G060900 chr4B 6126951 6127523 572 True 876 876 94.251 2011 2584 1 chr4B.!!$R2 573
18 TraesCS5B01G060900 chr3D 481562019 481562594 575 False 876 876 94.107 2008 2584 1 chr3D.!!$F2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 740 0.108207 AGGAGCTGTGGCATGCTATC 59.892 55.0 18.92 5.71 39.91 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1834 0.028242 CGCCACACAACGCTGTAAAA 59.972 50.0 0.0 0.0 33.22 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.270853 CAGGCGTGGCATTTACTAATAAAC 58.729 41.667 0.00 0.00 33.09 2.01
40 41 6.094325 CGTGGCATTTACTAATAAACCCTCAA 59.906 38.462 0.00 0.00 33.09 3.02
115 116 4.036518 AGGATACAGTCTTCTCAGGCAAT 58.963 43.478 0.00 0.00 41.41 3.56
179 180 0.250234 CAAGAAGGGCATCGTCTGGA 59.750 55.000 0.00 0.00 34.50 3.86
184 185 1.448540 GGGCATCGTCTGGAGTGTG 60.449 63.158 0.00 0.00 0.00 3.82
214 215 1.029947 GGAACATCCGGATTTGGCGT 61.030 55.000 16.19 6.35 0.00 5.68
222 223 3.283751 TCCGGATTTGGCGTGATAAATT 58.716 40.909 0.00 0.00 0.00 1.82
232 233 2.846193 CGTGATAAATTGATCCCCCGT 58.154 47.619 0.00 0.00 0.00 5.28
233 234 2.806244 CGTGATAAATTGATCCCCCGTC 59.194 50.000 0.00 0.00 0.00 4.79
241 242 1.223763 GATCCCCCGTCAACCTTCC 59.776 63.158 0.00 0.00 0.00 3.46
242 243 2.588856 GATCCCCCGTCAACCTTCCG 62.589 65.000 0.00 0.00 0.00 4.30
328 329 3.628646 GACATGGCGCCTGGACCTT 62.629 63.158 29.70 6.81 0.00 3.50
334 335 2.266055 CGCCTGGACCTTCTCCAC 59.734 66.667 0.00 0.00 44.99 4.02
352 353 3.771160 CGCTACTTCCACCCGGCT 61.771 66.667 0.00 0.00 0.00 5.52
379 380 0.179062 AGGTGATCTCCAGCATTCGC 60.179 55.000 15.93 0.00 45.30 4.70
382 383 0.807275 TGATCTCCAGCATTCGCACG 60.807 55.000 0.00 0.00 42.27 5.34
400 401 3.729698 TCGACACGCGTCACCGAT 61.730 61.111 9.86 0.00 42.74 4.18
454 455 4.668118 TTCACCGTTCGGTCCGCC 62.668 66.667 14.16 0.00 36.17 6.13
626 627 3.193479 GCTTGCTACTTGGGCAAATAAGT 59.807 43.478 2.87 0.00 46.81 2.24
690 692 2.170607 ACTGGAACGGGAGGATATGTTG 59.829 50.000 0.00 0.00 40.47 3.33
711 713 2.598394 GCTTTCTGCAGGTGCCCA 60.598 61.111 15.13 0.00 42.31 5.36
738 740 0.108207 AGGAGCTGTGGCATGCTATC 59.892 55.000 18.92 5.71 39.91 2.08
775 777 1.221840 CCCAAGGTGGAGGACATCG 59.778 63.158 0.00 0.00 40.96 3.84
777 779 0.324943 CCAAGGTGGAGGACATCGTT 59.675 55.000 0.00 0.00 40.96 3.85
789 791 2.289195 GGACATCGTTAACACAGGACCA 60.289 50.000 6.39 0.00 0.00 4.02
792 794 3.254060 CATCGTTAACACAGGACCAGAG 58.746 50.000 6.39 0.00 0.00 3.35
799 801 0.247736 CACAGGACCAGAGTGGCTAC 59.752 60.000 0.00 0.00 42.67 3.58
810 812 1.555533 GAGTGGCTACTTACCCTGCTT 59.444 52.381 3.47 0.00 37.25 3.91
812 814 0.618458 TGGCTACTTACCCTGCTTGG 59.382 55.000 0.00 0.00 0.00 3.61
864 866 5.189539 TGTCCTTATGATCATGTGGAGAACA 59.810 40.000 23.36 17.88 44.79 3.18
903 905 0.250252 TCACGCATGACAAGAAGCCA 60.250 50.000 0.00 0.00 0.00 4.75
910 912 0.550914 TGACAAGAAGCCACCACCTT 59.449 50.000 0.00 0.00 0.00 3.50
925 927 2.553904 CCACCTTCTGAAGCCTCACAAT 60.554 50.000 11.93 0.00 0.00 2.71
948 950 5.504853 TGATTCTTGCATGGGTACATTACA 58.495 37.500 0.00 0.00 34.35 2.41
1011 1013 0.336737 AGGGGAAGATGACGGTCTCT 59.663 55.000 9.88 6.95 0.00 3.10
1023 1025 3.119096 GTCTCTTTGCCGCCGGTC 61.119 66.667 4.45 0.00 0.00 4.79
1028 1030 4.690719 TTTGCCGCCGGTCGTCAT 62.691 61.111 4.45 0.00 36.19 3.06
1125 1128 1.573932 CAGTTTCATTGCGGCGACA 59.426 52.632 12.98 5.31 0.00 4.35
1185 1188 5.092105 CGAGGAGAAATCATCTATACTGCG 58.908 45.833 0.00 0.00 38.96 5.18
1224 1227 0.744414 GCGATAAAGCACTGGGAGCA 60.744 55.000 0.00 0.00 37.05 4.26
1227 1230 2.677902 CGATAAAGCACTGGGAGCAGAA 60.678 50.000 0.00 0.00 0.00 3.02
1275 1278 0.041535 TAGCCCTAAACAGGACCGGA 59.958 55.000 9.46 0.00 0.00 5.14
1330 1333 1.229975 TGTGGCGTTGATCACAGCAG 61.230 55.000 19.41 1.84 38.75 4.24
1387 1390 2.032799 CAGGAGATCCGAGATATAGCGC 59.967 54.545 0.00 0.00 42.08 5.92
1498 1501 0.532862 CCGAACTGCTGTGTGGTTCT 60.533 55.000 0.00 0.00 37.69 3.01
1533 1537 0.603569 CTGTTGTACGTCTGGCCTCT 59.396 55.000 3.32 0.00 0.00 3.69
1614 1618 9.610705 TCGATCCATATATTCTAGTACTACACC 57.389 37.037 0.00 0.00 0.00 4.16
1615 1619 9.392259 CGATCCATATATTCTAGTACTACACCA 57.608 37.037 0.00 0.00 0.00 4.17
1617 1621 8.557592 TCCATATATTCTAGTACTACACCACG 57.442 38.462 0.00 0.00 0.00 4.94
1618 1622 7.609146 TCCATATATTCTAGTACTACACCACGG 59.391 40.741 0.00 0.00 0.00 4.94
1619 1623 7.392673 CCATATATTCTAGTACTACACCACGGT 59.607 40.741 0.00 0.00 0.00 4.83
1628 1632 4.278956 CACCACGGTGCTACTTCC 57.721 61.111 2.68 0.00 39.39 3.46
1629 1633 1.369692 CACCACGGTGCTACTTCCA 59.630 57.895 2.68 0.00 39.39 3.53
1630 1634 0.036388 CACCACGGTGCTACTTCCAT 60.036 55.000 2.68 0.00 39.39 3.41
1631 1635 0.249398 ACCACGGTGCTACTTCCATC 59.751 55.000 1.68 0.00 0.00 3.51
1632 1636 0.462047 CCACGGTGCTACTTCCATCC 60.462 60.000 1.68 0.00 0.00 3.51
1633 1637 0.249120 CACGGTGCTACTTCCATCCA 59.751 55.000 0.00 0.00 0.00 3.41
1634 1638 0.249398 ACGGTGCTACTTCCATCCAC 59.751 55.000 0.00 0.00 0.00 4.02
1635 1639 0.462047 CGGTGCTACTTCCATCCACC 60.462 60.000 0.00 0.00 41.87 4.61
1636 1640 0.618458 GGTGCTACTTCCATCCACCA 59.382 55.000 3.43 0.00 44.07 4.17
1637 1641 1.212935 GGTGCTACTTCCATCCACCAT 59.787 52.381 3.43 0.00 44.07 3.55
1638 1642 2.438021 GGTGCTACTTCCATCCACCATA 59.562 50.000 3.43 0.00 44.07 2.74
1639 1643 3.073062 GGTGCTACTTCCATCCACCATAT 59.927 47.826 3.43 0.00 44.07 1.78
1640 1644 4.446311 GGTGCTACTTCCATCCACCATATT 60.446 45.833 3.43 0.00 44.07 1.28
1641 1645 5.133221 GTGCTACTTCCATCCACCATATTT 58.867 41.667 0.00 0.00 0.00 1.40
1642 1646 5.594317 GTGCTACTTCCATCCACCATATTTT 59.406 40.000 0.00 0.00 0.00 1.82
1643 1647 6.096846 GTGCTACTTCCATCCACCATATTTTT 59.903 38.462 0.00 0.00 0.00 1.94
1644 1648 6.321181 TGCTACTTCCATCCACCATATTTTTC 59.679 38.462 0.00 0.00 0.00 2.29
1645 1649 6.321181 GCTACTTCCATCCACCATATTTTTCA 59.679 38.462 0.00 0.00 0.00 2.69
1646 1650 7.014615 GCTACTTCCATCCACCATATTTTTCAT 59.985 37.037 0.00 0.00 0.00 2.57
1647 1651 7.352079 ACTTCCATCCACCATATTTTTCATC 57.648 36.000 0.00 0.00 0.00 2.92
1648 1652 7.128077 ACTTCCATCCACCATATTTTTCATCT 58.872 34.615 0.00 0.00 0.00 2.90
1649 1653 8.281531 ACTTCCATCCACCATATTTTTCATCTA 58.718 33.333 0.00 0.00 0.00 1.98
1650 1654 8.696043 TTCCATCCACCATATTTTTCATCTAG 57.304 34.615 0.00 0.00 0.00 2.43
1651 1655 6.716628 TCCATCCACCATATTTTTCATCTAGC 59.283 38.462 0.00 0.00 0.00 3.42
1652 1656 6.718454 CCATCCACCATATTTTTCATCTAGCT 59.282 38.462 0.00 0.00 0.00 3.32
1653 1657 7.309012 CCATCCACCATATTTTTCATCTAGCTG 60.309 40.741 0.00 0.00 0.00 4.24
1654 1658 6.662755 TCCACCATATTTTTCATCTAGCTGT 58.337 36.000 0.00 0.00 0.00 4.40
1655 1659 7.118723 TCCACCATATTTTTCATCTAGCTGTT 58.881 34.615 0.00 0.00 0.00 3.16
1656 1660 8.271458 TCCACCATATTTTTCATCTAGCTGTTA 58.729 33.333 0.00 0.00 0.00 2.41
1657 1661 8.345565 CCACCATATTTTTCATCTAGCTGTTAC 58.654 37.037 0.00 0.00 0.00 2.50
1658 1662 8.892723 CACCATATTTTTCATCTAGCTGTTACA 58.107 33.333 0.00 0.00 0.00 2.41
1659 1663 8.893727 ACCATATTTTTCATCTAGCTGTTACAC 58.106 33.333 0.00 0.00 0.00 2.90
1660 1664 8.064222 CCATATTTTTCATCTAGCTGTTACACG 58.936 37.037 0.00 0.00 0.00 4.49
1661 1665 8.604035 CATATTTTTCATCTAGCTGTTACACGT 58.396 33.333 0.00 0.00 0.00 4.49
1662 1666 6.854496 TTTTTCATCTAGCTGTTACACGTT 57.146 33.333 0.00 0.00 0.00 3.99
1663 1667 6.854496 TTTTCATCTAGCTGTTACACGTTT 57.146 33.333 0.00 0.00 0.00 3.60
1664 1668 7.949903 TTTTCATCTAGCTGTTACACGTTTA 57.050 32.000 0.00 0.00 0.00 2.01
1665 1669 6.939551 TTCATCTAGCTGTTACACGTTTAC 57.060 37.500 0.00 0.00 0.00 2.01
1666 1670 6.016213 TCATCTAGCTGTTACACGTTTACA 57.984 37.500 0.00 0.00 0.00 2.41
1667 1671 6.448852 TCATCTAGCTGTTACACGTTTACAA 58.551 36.000 0.00 0.00 0.00 2.41
1668 1672 6.364165 TCATCTAGCTGTTACACGTTTACAAC 59.636 38.462 0.00 0.00 0.00 3.32
1669 1673 4.984161 TCTAGCTGTTACACGTTTACAACC 59.016 41.667 0.00 0.00 0.00 3.77
1670 1674 3.533547 AGCTGTTACACGTTTACAACCA 58.466 40.909 0.00 0.00 0.00 3.67
1671 1675 4.131596 AGCTGTTACACGTTTACAACCAT 58.868 39.130 0.00 0.00 0.00 3.55
1672 1676 5.299148 AGCTGTTACACGTTTACAACCATA 58.701 37.500 0.00 0.00 0.00 2.74
1673 1677 5.407387 AGCTGTTACACGTTTACAACCATAG 59.593 40.000 0.00 0.00 0.00 2.23
1674 1678 5.594724 TGTTACACGTTTACAACCATAGC 57.405 39.130 0.00 0.00 0.00 2.97
1675 1679 4.451774 TGTTACACGTTTACAACCATAGCC 59.548 41.667 0.00 0.00 0.00 3.93
1676 1680 3.412237 ACACGTTTACAACCATAGCCT 57.588 42.857 0.00 0.00 0.00 4.58
1677 1681 4.540359 ACACGTTTACAACCATAGCCTA 57.460 40.909 0.00 0.00 0.00 3.93
1678 1682 5.093849 ACACGTTTACAACCATAGCCTAT 57.906 39.130 0.00 0.00 0.00 2.57
1679 1683 5.114081 ACACGTTTACAACCATAGCCTATC 58.886 41.667 0.00 0.00 0.00 2.08
1680 1684 5.113383 CACGTTTACAACCATAGCCTATCA 58.887 41.667 0.00 0.00 0.00 2.15
1681 1685 5.758296 CACGTTTACAACCATAGCCTATCAT 59.242 40.000 0.00 0.00 0.00 2.45
1682 1686 5.989777 ACGTTTACAACCATAGCCTATCATC 59.010 40.000 0.00 0.00 0.00 2.92
1683 1687 6.183360 ACGTTTACAACCATAGCCTATCATCT 60.183 38.462 0.00 0.00 0.00 2.90
1684 1688 7.014905 ACGTTTACAACCATAGCCTATCATCTA 59.985 37.037 0.00 0.00 0.00 1.98
1685 1689 7.328737 CGTTTACAACCATAGCCTATCATCTAC 59.671 40.741 0.00 0.00 0.00 2.59
1686 1690 8.368668 GTTTACAACCATAGCCTATCATCTACT 58.631 37.037 0.00 0.00 0.00 2.57
1687 1691 9.596308 TTTACAACCATAGCCTATCATCTACTA 57.404 33.333 0.00 0.00 0.00 1.82
1688 1692 9.769677 TTACAACCATAGCCTATCATCTACTAT 57.230 33.333 0.00 0.00 0.00 2.12
1689 1693 8.671987 ACAACCATAGCCTATCATCTACTATT 57.328 34.615 0.00 0.00 0.00 1.73
1690 1694 8.535335 ACAACCATAGCCTATCATCTACTATTG 58.465 37.037 0.00 0.00 0.00 1.90
1691 1695 8.535335 CAACCATAGCCTATCATCTACTATTGT 58.465 37.037 0.00 0.00 0.00 2.71
1692 1696 8.671987 ACCATAGCCTATCATCTACTATTGTT 57.328 34.615 0.00 0.00 0.00 2.83
1693 1697 9.105844 ACCATAGCCTATCATCTACTATTGTTT 57.894 33.333 0.00 0.00 0.00 2.83
1694 1698 9.376075 CCATAGCCTATCATCTACTATTGTTTG 57.624 37.037 0.00 0.00 0.00 2.93
1695 1699 9.935241 CATAGCCTATCATCTACTATTGTTTGT 57.065 33.333 0.00 0.00 0.00 2.83
1697 1701 8.894768 AGCCTATCATCTACTATTGTTTGTTC 57.105 34.615 0.00 0.00 0.00 3.18
1698 1702 8.709308 AGCCTATCATCTACTATTGTTTGTTCT 58.291 33.333 0.00 0.00 0.00 3.01
1699 1703 9.331282 GCCTATCATCTACTATTGTTTGTTCTT 57.669 33.333 0.00 0.00 0.00 2.52
1702 1706 8.798859 ATCATCTACTATTGTTTGTTCTTGCT 57.201 30.769 0.00 0.00 0.00 3.91
1703 1707 8.032952 TCATCTACTATTGTTTGTTCTTGCTG 57.967 34.615 0.00 0.00 0.00 4.41
1704 1708 6.801539 TCTACTATTGTTTGTTCTTGCTGG 57.198 37.500 0.00 0.00 0.00 4.85
1705 1709 4.243007 ACTATTGTTTGTTCTTGCTGGC 57.757 40.909 0.00 0.00 0.00 4.85
1706 1710 2.531522 ATTGTTTGTTCTTGCTGGCC 57.468 45.000 0.00 0.00 0.00 5.36
1707 1711 1.189752 TTGTTTGTTCTTGCTGGCCA 58.810 45.000 4.71 4.71 0.00 5.36
1708 1712 1.189752 TGTTTGTTCTTGCTGGCCAA 58.810 45.000 7.01 0.00 0.00 4.52
1709 1713 1.134848 TGTTTGTTCTTGCTGGCCAAC 60.135 47.619 7.01 1.82 0.00 3.77
1710 1714 1.136891 GTTTGTTCTTGCTGGCCAACT 59.863 47.619 7.01 0.00 0.00 3.16
1711 1715 1.032014 TTGTTCTTGCTGGCCAACTC 58.968 50.000 7.01 0.00 0.00 3.01
1712 1716 0.106769 TGTTCTTGCTGGCCAACTCA 60.107 50.000 7.01 1.88 0.00 3.41
1713 1717 1.251251 GTTCTTGCTGGCCAACTCAT 58.749 50.000 7.01 0.00 0.00 2.90
1714 1718 1.200948 GTTCTTGCTGGCCAACTCATC 59.799 52.381 7.01 0.00 0.00 2.92
1715 1719 0.401356 TCTTGCTGGCCAACTCATCA 59.599 50.000 7.01 0.00 0.00 3.07
1716 1720 1.005097 TCTTGCTGGCCAACTCATCAT 59.995 47.619 7.01 0.00 0.00 2.45
1717 1721 1.134367 CTTGCTGGCCAACTCATCATG 59.866 52.381 7.01 0.00 0.00 3.07
1718 1722 0.328926 TGCTGGCCAACTCATCATGA 59.671 50.000 7.01 0.00 0.00 3.07
1719 1723 0.737219 GCTGGCCAACTCATCATGAC 59.263 55.000 7.01 0.00 0.00 3.06
1720 1724 1.386533 CTGGCCAACTCATCATGACC 58.613 55.000 7.01 0.00 0.00 4.02
1721 1725 0.994247 TGGCCAACTCATCATGACCT 59.006 50.000 0.61 0.00 0.00 3.85
1722 1726 1.340308 TGGCCAACTCATCATGACCTG 60.340 52.381 0.61 0.00 0.00 4.00
1723 1727 1.065199 GGCCAACTCATCATGACCTGA 60.065 52.381 0.00 0.00 38.53 3.86
1724 1728 2.012673 GCCAACTCATCATGACCTGAC 58.987 52.381 0.00 0.00 36.48 3.51
1725 1729 2.355513 GCCAACTCATCATGACCTGACT 60.356 50.000 0.00 0.00 36.48 3.41
1726 1730 3.268330 CCAACTCATCATGACCTGACTG 58.732 50.000 0.00 0.00 36.48 3.51
1727 1731 3.307269 CCAACTCATCATGACCTGACTGT 60.307 47.826 0.00 0.00 36.48 3.55
1728 1732 3.606595 ACTCATCATGACCTGACTGTG 57.393 47.619 0.00 0.00 36.48 3.66
1729 1733 2.277969 CTCATCATGACCTGACTGTGC 58.722 52.381 0.00 0.00 36.48 4.57
1730 1734 1.004595 CATCATGACCTGACTGTGCG 58.995 55.000 0.00 0.00 36.48 5.34
1731 1735 0.610174 ATCATGACCTGACTGTGCGT 59.390 50.000 0.00 0.00 36.48 5.24
1732 1736 0.319813 TCATGACCTGACTGTGCGTG 60.320 55.000 0.00 0.00 0.00 5.34
1733 1737 1.669115 ATGACCTGACTGTGCGTGC 60.669 57.895 0.00 0.00 0.00 5.34
1734 1738 3.406361 GACCTGACTGTGCGTGCG 61.406 66.667 0.00 0.00 0.00 5.34
1735 1739 4.969196 ACCTGACTGTGCGTGCGG 62.969 66.667 0.00 0.00 0.00 5.69
1736 1740 4.969196 CCTGACTGTGCGTGCGGT 62.969 66.667 0.00 0.00 0.00 5.68
1737 1741 3.705638 CTGACTGTGCGTGCGGTG 61.706 66.667 0.00 0.00 0.00 4.94
1738 1742 4.214327 TGACTGTGCGTGCGGTGA 62.214 61.111 0.00 0.00 0.00 4.02
1739 1743 2.964925 GACTGTGCGTGCGGTGAA 60.965 61.111 0.00 0.00 0.00 3.18
1740 1744 2.943345 GACTGTGCGTGCGGTGAAG 61.943 63.158 0.00 0.00 0.00 3.02
1741 1745 3.716006 CTGTGCGTGCGGTGAAGG 61.716 66.667 0.00 0.00 0.00 3.46
1742 1746 4.539083 TGTGCGTGCGGTGAAGGT 62.539 61.111 0.00 0.00 0.00 3.50
1743 1747 4.012895 GTGCGTGCGGTGAAGGTG 62.013 66.667 0.00 0.00 0.00 4.00
1744 1748 4.228567 TGCGTGCGGTGAAGGTGA 62.229 61.111 0.00 0.00 0.00 4.02
1745 1749 3.712881 GCGTGCGGTGAAGGTGAC 61.713 66.667 0.00 0.00 0.00 3.67
1746 1750 2.279851 CGTGCGGTGAAGGTGACA 60.280 61.111 0.00 0.00 0.00 3.58
1747 1751 1.667830 CGTGCGGTGAAGGTGACAT 60.668 57.895 0.00 0.00 0.00 3.06
1748 1752 1.227999 CGTGCGGTGAAGGTGACATT 61.228 55.000 0.00 0.00 0.00 2.71
1749 1753 0.238289 GTGCGGTGAAGGTGACATTG 59.762 55.000 0.00 0.00 0.00 2.82
1750 1754 0.179032 TGCGGTGAAGGTGACATTGT 60.179 50.000 0.00 0.00 0.00 2.71
1751 1755 0.951558 GCGGTGAAGGTGACATTGTT 59.048 50.000 0.00 0.00 0.00 2.83
1752 1756 2.147958 GCGGTGAAGGTGACATTGTTA 58.852 47.619 0.00 0.00 0.00 2.41
1753 1757 2.095919 GCGGTGAAGGTGACATTGTTAC 60.096 50.000 3.23 3.23 0.00 2.50
1754 1758 3.399330 CGGTGAAGGTGACATTGTTACT 58.601 45.455 11.03 0.00 0.00 2.24
1755 1759 3.186409 CGGTGAAGGTGACATTGTTACTG 59.814 47.826 11.03 0.00 0.00 2.74
1756 1760 4.134563 GGTGAAGGTGACATTGTTACTGT 58.865 43.478 11.03 0.52 0.00 3.55
1757 1761 4.024048 GGTGAAGGTGACATTGTTACTGTG 60.024 45.833 11.03 0.00 0.00 3.66
1758 1762 4.024048 GTGAAGGTGACATTGTTACTGTGG 60.024 45.833 11.03 0.00 0.00 4.17
1759 1763 4.141597 TGAAGGTGACATTGTTACTGTGGA 60.142 41.667 11.03 0.00 0.00 4.02
1760 1764 4.008074 AGGTGACATTGTTACTGTGGAG 57.992 45.455 11.03 0.00 0.00 3.86
1761 1765 3.391296 AGGTGACATTGTTACTGTGGAGT 59.609 43.478 11.03 0.00 36.07 3.85
1762 1766 3.498397 GGTGACATTGTTACTGTGGAGTG 59.502 47.826 11.03 0.00 33.21 3.51
1763 1767 4.377021 GTGACATTGTTACTGTGGAGTGA 58.623 43.478 4.57 0.00 33.21 3.41
1764 1768 4.449068 GTGACATTGTTACTGTGGAGTGAG 59.551 45.833 4.57 0.00 33.21 3.51
1765 1769 4.100963 TGACATTGTTACTGTGGAGTGAGT 59.899 41.667 0.00 0.00 33.21 3.41
1766 1770 4.380531 ACATTGTTACTGTGGAGTGAGTG 58.619 43.478 0.00 0.00 33.21 3.51
1767 1771 2.526304 TGTTACTGTGGAGTGAGTGC 57.474 50.000 0.00 0.00 33.21 4.40
1768 1772 1.760029 TGTTACTGTGGAGTGAGTGCA 59.240 47.619 0.00 0.00 33.21 4.57
1769 1773 2.368548 TGTTACTGTGGAGTGAGTGCAT 59.631 45.455 0.00 0.00 33.21 3.96
1770 1774 2.738846 GTTACTGTGGAGTGAGTGCATG 59.261 50.000 0.00 0.00 33.21 4.06
1771 1775 0.604780 ACTGTGGAGTGAGTGCATGC 60.605 55.000 11.82 11.82 0.00 4.06
1772 1776 0.604511 CTGTGGAGTGAGTGCATGCA 60.605 55.000 18.46 18.46 0.00 3.96
1773 1777 0.886043 TGTGGAGTGAGTGCATGCAC 60.886 55.000 37.87 37.87 46.50 4.57
1786 1790 5.194199 GTGCATGCACATCATACAAAAAC 57.806 39.130 39.12 12.24 45.53 2.43
1787 1791 4.925054 GTGCATGCACATCATACAAAAACT 59.075 37.500 39.12 0.00 45.53 2.66
1788 1792 5.406175 GTGCATGCACATCATACAAAAACTT 59.594 36.000 39.12 0.00 45.53 2.66
1789 1793 6.585702 GTGCATGCACATCATACAAAAACTTA 59.414 34.615 39.12 1.19 45.53 2.24
1790 1794 7.116090 GTGCATGCACATCATACAAAAACTTAA 59.884 33.333 39.12 0.77 45.53 1.85
1791 1795 7.818446 TGCATGCACATCATACAAAAACTTAAT 59.182 29.630 18.46 0.00 33.19 1.40
1792 1796 8.658609 GCATGCACATCATACAAAAACTTAATT 58.341 29.630 14.21 0.00 33.19 1.40
1794 1798 9.926158 ATGCACATCATACAAAAACTTAATTCA 57.074 25.926 0.00 0.00 32.59 2.57
1795 1799 9.409312 TGCACATCATACAAAAACTTAATTCAG 57.591 29.630 0.00 0.00 0.00 3.02
1796 1800 9.410556 GCACATCATACAAAAACTTAATTCAGT 57.589 29.630 0.00 0.00 0.00 3.41
1805 1809 9.260002 ACAAAAACTTAATTCAGTAAAGGCATG 57.740 29.630 0.00 0.00 0.00 4.06
1806 1810 7.889589 AAAACTTAATTCAGTAAAGGCATGC 57.110 32.000 9.90 9.90 0.00 4.06
1807 1811 6.588719 AACTTAATTCAGTAAAGGCATGCA 57.411 33.333 21.36 0.00 0.00 3.96
1808 1812 5.954335 ACTTAATTCAGTAAAGGCATGCAC 58.046 37.500 21.36 9.02 0.00 4.57
1809 1813 3.874392 AATTCAGTAAAGGCATGCACC 57.126 42.857 21.36 2.42 0.00 5.01
1810 1814 1.164411 TTCAGTAAAGGCATGCACCG 58.836 50.000 21.36 1.09 33.69 4.94
1811 1815 1.137404 CAGTAAAGGCATGCACCGC 59.863 57.895 21.36 1.15 33.69 5.68
1812 1816 1.002134 AGTAAAGGCATGCACCGCT 60.002 52.632 21.36 3.93 33.69 5.52
1813 1817 0.251916 AGTAAAGGCATGCACCGCTA 59.748 50.000 21.36 0.01 33.69 4.26
1814 1818 1.091537 GTAAAGGCATGCACCGCTAA 58.908 50.000 21.36 0.00 33.69 3.09
1815 1819 1.091537 TAAAGGCATGCACCGCTAAC 58.908 50.000 21.36 0.00 33.69 2.34
1816 1820 1.922135 AAAGGCATGCACCGCTAACG 61.922 55.000 21.36 0.00 39.67 3.18
1817 1821 2.796483 AAGGCATGCACCGCTAACGA 62.796 55.000 21.36 0.00 43.93 3.85
1818 1822 2.399611 GCATGCACCGCTAACGAC 59.600 61.111 14.21 0.00 43.93 4.34
1819 1823 2.100631 GCATGCACCGCTAACGACT 61.101 57.895 14.21 0.00 43.93 4.18
1820 1824 0.804544 GCATGCACCGCTAACGACTA 60.805 55.000 14.21 0.00 43.93 2.59
1821 1825 1.852942 CATGCACCGCTAACGACTAT 58.147 50.000 0.00 0.00 43.93 2.12
1822 1826 1.787155 CATGCACCGCTAACGACTATC 59.213 52.381 0.00 0.00 43.93 2.08
1823 1827 1.100510 TGCACCGCTAACGACTATCT 58.899 50.000 0.00 0.00 43.93 1.98
1824 1828 2.291365 TGCACCGCTAACGACTATCTA 58.709 47.619 0.00 0.00 43.93 1.98
1825 1829 2.289820 TGCACCGCTAACGACTATCTAG 59.710 50.000 0.00 0.00 43.93 2.43
1826 1830 2.350580 GCACCGCTAACGACTATCTAGG 60.351 54.545 0.00 0.00 43.93 3.02
1827 1831 3.136763 CACCGCTAACGACTATCTAGGA 58.863 50.000 0.00 0.00 43.93 2.94
1828 1832 3.562973 CACCGCTAACGACTATCTAGGAA 59.437 47.826 0.00 0.00 43.93 3.36
1829 1833 4.036027 CACCGCTAACGACTATCTAGGAAA 59.964 45.833 0.00 0.00 43.93 3.13
1830 1834 4.826183 ACCGCTAACGACTATCTAGGAAAT 59.174 41.667 0.00 0.00 43.93 2.17
1831 1835 5.301298 ACCGCTAACGACTATCTAGGAAATT 59.699 40.000 0.00 0.00 43.93 1.82
1832 1836 6.183360 ACCGCTAACGACTATCTAGGAAATTT 60.183 38.462 0.00 0.00 43.93 1.82
1833 1837 6.700520 CCGCTAACGACTATCTAGGAAATTTT 59.299 38.462 0.00 0.00 43.93 1.82
1834 1838 7.864379 CCGCTAACGACTATCTAGGAAATTTTA 59.136 37.037 0.00 0.00 43.93 1.52
1835 1839 8.689069 CGCTAACGACTATCTAGGAAATTTTAC 58.311 37.037 0.00 0.00 43.93 2.01
1836 1840 9.525409 GCTAACGACTATCTAGGAAATTTTACA 57.475 33.333 0.00 0.00 0.00 2.41
1838 1842 8.421673 AACGACTATCTAGGAAATTTTACAGC 57.578 34.615 0.00 0.00 0.00 4.40
1839 1843 6.696148 ACGACTATCTAGGAAATTTTACAGCG 59.304 38.462 0.00 0.00 0.00 5.18
1840 1844 6.696148 CGACTATCTAGGAAATTTTACAGCGT 59.304 38.462 0.00 0.00 0.00 5.07
1841 1845 7.222224 CGACTATCTAGGAAATTTTACAGCGTT 59.778 37.037 0.00 0.00 0.00 4.84
1842 1846 8.197988 ACTATCTAGGAAATTTTACAGCGTTG 57.802 34.615 0.00 0.00 0.00 4.10
1843 1847 7.822822 ACTATCTAGGAAATTTTACAGCGTTGT 59.177 33.333 10.52 10.52 41.39 3.32
1844 1848 6.236017 TCTAGGAAATTTTACAGCGTTGTG 57.764 37.500 15.78 0.00 38.23 3.33
1845 1849 4.911514 AGGAAATTTTACAGCGTTGTGT 57.088 36.364 15.78 3.81 38.23 3.72
1846 1850 4.606961 AGGAAATTTTACAGCGTTGTGTG 58.393 39.130 15.78 0.00 38.23 3.82
1847 1851 3.733727 GGAAATTTTACAGCGTTGTGTGG 59.266 43.478 15.78 0.00 38.23 4.17
1848 1852 2.415697 ATTTTACAGCGTTGTGTGGC 57.584 45.000 15.78 0.00 38.23 5.01
1849 1853 0.028242 TTTTACAGCGTTGTGTGGCG 59.972 50.000 15.78 0.00 38.23 5.69
1850 1854 1.090625 TTTACAGCGTTGTGTGGCGT 61.091 50.000 15.78 0.00 38.23 5.68
1851 1855 0.249363 TTACAGCGTTGTGTGGCGTA 60.249 50.000 15.78 0.00 38.23 4.42
1852 1856 0.665068 TACAGCGTTGTGTGGCGTAG 60.665 55.000 15.78 0.00 38.23 3.51
1866 1870 3.139029 CGTAGCCAAACAGGTCCTC 57.861 57.895 0.00 0.00 40.61 3.71
1867 1871 0.608640 CGTAGCCAAACAGGTCCTCT 59.391 55.000 0.00 0.00 40.61 3.69
1882 1886 7.589958 CAGGTCCTCTGTATAGTGAATACTT 57.410 40.000 0.00 0.00 41.05 2.24
1883 1887 7.653647 CAGGTCCTCTGTATAGTGAATACTTC 58.346 42.308 0.00 0.00 41.05 3.01
1884 1888 7.285629 CAGGTCCTCTGTATAGTGAATACTTCA 59.714 40.741 0.00 0.00 41.05 3.02
1885 1889 7.839705 AGGTCCTCTGTATAGTGAATACTTCAA 59.160 37.037 0.00 0.00 42.15 2.69
1886 1890 8.475639 GGTCCTCTGTATAGTGAATACTTCAAA 58.524 37.037 0.00 0.00 42.15 2.69
1887 1891 9.871238 GTCCTCTGTATAGTGAATACTTCAAAA 57.129 33.333 0.00 0.00 42.15 2.44
1912 1916 9.984190 AAAACGTTGTTATATTAAAACCATGGT 57.016 25.926 13.00 13.00 0.00 3.55
1926 1930 9.584008 TTAAAACCATGGTATTTTGTACCTACA 57.416 29.630 20.12 0.00 38.39 2.74
1927 1931 8.658840 AAAACCATGGTATTTTGTACCTACAT 57.341 30.769 20.12 0.00 38.39 2.29
1928 1932 7.639113 AACCATGGTATTTTGTACCTACATG 57.361 36.000 20.12 0.00 38.39 3.21
1929 1933 5.592688 ACCATGGTATTTTGTACCTACATGC 59.407 40.000 18.10 0.00 38.39 4.06
1930 1934 5.827797 CCATGGTATTTTGTACCTACATGCT 59.172 40.000 2.57 0.00 38.39 3.79
1931 1935 6.995686 CCATGGTATTTTGTACCTACATGCTA 59.004 38.462 2.57 0.00 38.39 3.49
1932 1936 7.500892 CCATGGTATTTTGTACCTACATGCTAA 59.499 37.037 2.57 0.00 38.39 3.09
1933 1937 8.898761 CATGGTATTTTGTACCTACATGCTAAA 58.101 33.333 5.89 0.00 38.39 1.85
1934 1938 9.640952 ATGGTATTTTGTACCTACATGCTAAAT 57.359 29.630 5.89 0.00 38.39 1.40
1935 1939 9.469097 TGGTATTTTGTACCTACATGCTAAATT 57.531 29.630 5.89 0.00 38.39 1.82
1984 1988 9.944663 TTTTTGTAGTACTTTGCTATCAAACAG 57.055 29.630 0.00 0.00 37.28 3.16
1985 1989 7.667043 TTGTAGTACTTTGCTATCAAACAGG 57.333 36.000 0.00 0.00 37.28 4.00
1986 1990 6.170506 TGTAGTACTTTGCTATCAAACAGGG 58.829 40.000 0.00 0.00 37.28 4.45
1987 1991 4.010349 AGTACTTTGCTATCAAACAGGGC 58.990 43.478 0.00 0.00 37.28 5.19
1988 1992 2.171003 ACTTTGCTATCAAACAGGGCC 58.829 47.619 0.00 0.00 37.28 5.80
1989 1993 2.225117 ACTTTGCTATCAAACAGGGCCT 60.225 45.455 0.00 0.00 37.28 5.19
1990 1994 2.603075 TTGCTATCAAACAGGGCCTT 57.397 45.000 1.32 0.00 0.00 4.35
1991 1995 3.730215 TTGCTATCAAACAGGGCCTTA 57.270 42.857 1.32 0.00 0.00 2.69
1992 1996 3.730215 TGCTATCAAACAGGGCCTTAA 57.270 42.857 1.32 0.00 0.00 1.85
1993 1997 4.249638 TGCTATCAAACAGGGCCTTAAT 57.750 40.909 1.32 0.00 0.00 1.40
1994 1998 4.207165 TGCTATCAAACAGGGCCTTAATC 58.793 43.478 1.32 0.00 0.00 1.75
1995 1999 3.570125 GCTATCAAACAGGGCCTTAATCC 59.430 47.826 1.32 0.00 0.00 3.01
1996 2000 3.756082 ATCAAACAGGGCCTTAATCCA 57.244 42.857 1.32 0.00 0.00 3.41
1997 2001 2.802719 TCAAACAGGGCCTTAATCCAC 58.197 47.619 1.32 0.00 0.00 4.02
1998 2002 2.109128 TCAAACAGGGCCTTAATCCACA 59.891 45.455 1.32 0.00 0.00 4.17
1999 2003 3.099141 CAAACAGGGCCTTAATCCACAT 58.901 45.455 1.32 0.00 0.00 3.21
2000 2004 2.442236 ACAGGGCCTTAATCCACATG 57.558 50.000 1.32 0.00 0.00 3.21
2001 2005 1.640670 ACAGGGCCTTAATCCACATGT 59.359 47.619 1.32 0.00 0.00 3.21
2002 2006 2.849943 ACAGGGCCTTAATCCACATGTA 59.150 45.455 1.32 0.00 0.00 2.29
2003 2007 3.463329 ACAGGGCCTTAATCCACATGTAT 59.537 43.478 1.32 0.00 0.00 2.29
2004 2008 3.822735 CAGGGCCTTAATCCACATGTATG 59.177 47.826 1.32 0.00 0.00 2.39
2005 2009 2.558359 GGGCCTTAATCCACATGTATGC 59.442 50.000 0.84 0.00 0.00 3.14
2006 2010 3.221771 GGCCTTAATCCACATGTATGCA 58.778 45.455 0.00 0.00 0.00 3.96
2009 2013 4.464008 CCTTAATCCACATGTATGCAGGT 58.536 43.478 0.00 0.00 40.58 4.00
2015 2019 4.406456 TCCACATGTATGCAGGTTTTTCT 58.594 39.130 0.00 0.00 37.55 2.52
2047 2051 2.567615 GTTTCTTAGTCAGGAGGCCAGA 59.432 50.000 5.01 0.00 0.00 3.86
2198 2202 3.075998 CACAGAGTGCGCGATGTC 58.924 61.111 12.10 1.33 0.00 3.06
2373 2377 2.906691 TGGTTGCAAATGGGTCTTTG 57.093 45.000 0.00 0.00 38.79 2.77
2385 2389 4.243793 TGGGTCTTTGAGAAGAAAACCA 57.756 40.909 0.00 5.10 43.21 3.67
2405 2409 4.592351 ACCAATGTGGATGGAAATGTTCAA 59.408 37.500 0.18 0.00 40.96 2.69
2437 2441 0.165944 CGGCTTGTCGCTAAAGGTTG 59.834 55.000 0.00 0.00 39.13 3.77
2514 2518 6.572509 GCTGAAGTCAGTGAGGATTGTACTAA 60.573 42.308 9.94 0.00 45.45 2.24
2521 2525 9.122779 GTCAGTGAGGATTGTACTAACTATAGT 57.877 37.037 0.00 0.00 44.53 2.12
2524 2528 9.476928 AGTGAGGATTGTACTAACTATAGTTGT 57.523 33.333 25.27 21.26 42.39 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.099436 GCGCACATAAGCTTTGAGGG 59.901 55.000 3.20 10.77 0.00 4.30
40 41 1.926511 GCACCTGCGCACATAAGCTT 61.927 55.000 5.66 3.48 0.00 3.74
91 92 3.027412 GCCTGAGAAGACTGTATCCTCA 58.973 50.000 0.00 0.00 33.43 3.86
184 185 3.792185 GATGTTCCGGCCATCCCCC 62.792 68.421 18.21 0.35 34.02 5.40
196 197 0.098728 CACGCCAAATCCGGATGTTC 59.901 55.000 19.95 5.62 0.00 3.18
214 215 4.204012 GTTGACGGGGGATCAATTTATCA 58.796 43.478 2.21 0.00 38.31 2.15
222 223 1.559065 GGAAGGTTGACGGGGGATCA 61.559 60.000 0.00 0.00 0.00 2.92
241 242 0.808755 GTTGGGTGATAAGTTGGCCG 59.191 55.000 0.00 0.00 0.00 6.13
242 243 1.818674 CTGTTGGGTGATAAGTTGGCC 59.181 52.381 0.00 0.00 0.00 5.36
328 329 1.255667 GGTGGAAGTAGCGGTGGAGA 61.256 60.000 0.00 0.00 0.00 3.71
334 335 4.832608 GCCGGGTGGAAGTAGCGG 62.833 72.222 2.18 0.00 37.49 5.52
400 401 1.526686 GGCCCATGCGATGATGTCA 60.527 57.895 0.00 0.00 38.85 3.58
454 455 0.939577 CGTCCATGGCGAACCGATAG 60.940 60.000 19.72 0.00 39.70 2.08
626 627 2.859165 AACCTCAAGATGGCGAGAAA 57.141 45.000 0.00 0.00 0.00 2.52
711 713 1.538687 GCCACAGCTCCTTTGCCAAT 61.539 55.000 0.00 0.00 35.50 3.16
775 777 2.767505 CCACTCTGGTCCTGTGTTAAC 58.232 52.381 0.00 0.00 31.35 2.01
777 779 0.685097 GCCACTCTGGTCCTGTGTTA 59.315 55.000 1.05 0.00 40.46 2.41
789 791 1.196012 GCAGGGTAAGTAGCCACTCT 58.804 55.000 9.15 0.00 46.03 3.24
792 794 1.679032 CCAAGCAGGGTAAGTAGCCAC 60.679 57.143 9.15 1.12 46.03 5.01
799 801 2.043953 GGGGCCAAGCAGGGTAAG 60.044 66.667 4.39 0.00 38.09 2.34
819 821 1.158484 TCATCCTCGTAGCCTCGTCG 61.158 60.000 0.00 0.00 0.00 5.12
864 866 0.839277 TCTCATTCCGGACATGCCAT 59.161 50.000 1.83 0.00 35.94 4.40
903 905 0.398318 GTGAGGCTTCAGAAGGTGGT 59.602 55.000 12.30 0.00 32.98 4.16
910 912 4.564782 AGAATCATTGTGAGGCTTCAGA 57.435 40.909 0.00 0.00 32.98 3.27
925 927 5.504853 TGTAATGTACCCATGCAAGAATCA 58.495 37.500 0.00 0.00 0.00 2.57
1021 1023 2.202892 GGGAGGCCGAATGACGAC 60.203 66.667 0.00 0.00 45.77 4.34
1023 1025 1.815421 CTTGGGAGGCCGAATGACG 60.815 63.158 0.00 0.00 42.18 4.35
1125 1128 2.043450 CCTCCTCCTGTCGCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
1132 1135 2.357569 GCAAAATCATCCCTCCTCCTGT 60.358 50.000 0.00 0.00 0.00 4.00
1212 1215 0.250640 CAAGTTCTGCTCCCAGTGCT 60.251 55.000 0.00 0.00 40.09 4.40
1275 1278 0.249489 GCTCGACCGTGATAGGCAAT 60.249 55.000 0.00 0.00 33.69 3.56
1330 1333 0.460311 ACCGAACGATCCTCCACATC 59.540 55.000 0.00 0.00 0.00 3.06
1356 1359 1.135094 GGATCTCCTGAATGAGGGCA 58.865 55.000 0.00 0.00 43.06 5.36
1357 1360 0.034616 CGGATCTCCTGAATGAGGGC 59.965 60.000 0.00 0.00 43.06 5.19
1374 1377 1.153745 GGCAGGCGCTATATCTCGG 60.154 63.158 7.64 0.00 38.60 4.63
1387 1390 4.479993 CTCCCTTCCAGCGGCAGG 62.480 72.222 4.84 4.84 0.00 4.85
1485 1488 0.317160 CCGAGTAGAACCACACAGCA 59.683 55.000 0.00 0.00 0.00 4.41
1533 1537 0.972134 CTCAAGGTGGTCTCTCAGCA 59.028 55.000 0.00 0.00 37.59 4.41
1591 1595 9.175312 CGTGGTGTAGTACTAGAATATATGGAT 57.825 37.037 1.87 0.00 0.00 3.41
1592 1596 7.609146 CCGTGGTGTAGTACTAGAATATATGGA 59.391 40.741 1.87 0.00 0.00 3.41
1593 1597 7.392673 ACCGTGGTGTAGTACTAGAATATATGG 59.607 40.741 1.87 6.78 0.00 2.74
1594 1598 8.235226 CACCGTGGTGTAGTACTAGAATATATG 58.765 40.741 10.94 0.00 40.91 1.78
1595 1599 7.094463 GCACCGTGGTGTAGTACTAGAATATAT 60.094 40.741 19.56 0.00 46.90 0.86
1596 1600 6.205464 GCACCGTGGTGTAGTACTAGAATATA 59.795 42.308 19.56 0.00 46.90 0.86
1597 1601 5.009410 GCACCGTGGTGTAGTACTAGAATAT 59.991 44.000 19.56 0.00 46.90 1.28
1598 1602 4.336433 GCACCGTGGTGTAGTACTAGAATA 59.664 45.833 19.56 0.00 46.90 1.75
1599 1603 3.129988 GCACCGTGGTGTAGTACTAGAAT 59.870 47.826 19.56 0.00 46.90 2.40
1600 1604 2.489329 GCACCGTGGTGTAGTACTAGAA 59.511 50.000 19.56 0.00 46.90 2.10
1601 1605 2.086869 GCACCGTGGTGTAGTACTAGA 58.913 52.381 19.56 0.00 46.90 2.43
1602 1606 2.089980 AGCACCGTGGTGTAGTACTAG 58.910 52.381 19.56 0.00 46.90 2.57
1603 1607 2.205022 AGCACCGTGGTGTAGTACTA 57.795 50.000 19.56 0.00 46.90 1.82
1604 1608 1.815003 GTAGCACCGTGGTGTAGTACT 59.185 52.381 19.56 10.42 46.90 2.73
1605 1609 1.815003 AGTAGCACCGTGGTGTAGTAC 59.185 52.381 19.56 16.88 46.90 2.73
1606 1610 2.205022 AGTAGCACCGTGGTGTAGTA 57.795 50.000 19.56 7.23 46.90 1.82
1607 1611 1.271656 GAAGTAGCACCGTGGTGTAGT 59.728 52.381 19.56 10.82 46.90 2.73
1608 1612 1.403780 GGAAGTAGCACCGTGGTGTAG 60.404 57.143 19.56 0.00 46.90 2.74
1609 1613 0.604578 GGAAGTAGCACCGTGGTGTA 59.395 55.000 19.56 8.65 46.90 2.90
1610 1614 1.370064 GGAAGTAGCACCGTGGTGT 59.630 57.895 19.56 9.55 46.90 4.16
1612 1616 0.249398 GATGGAAGTAGCACCGTGGT 59.751 55.000 8.53 8.53 0.00 4.16
1613 1617 0.462047 GGATGGAAGTAGCACCGTGG 60.462 60.000 0.00 0.00 0.00 4.94
1614 1618 0.249120 TGGATGGAAGTAGCACCGTG 59.751 55.000 0.00 0.00 0.00 4.94
1615 1619 0.249398 GTGGATGGAAGTAGCACCGT 59.751 55.000 0.00 0.00 0.00 4.83
1616 1620 0.462047 GGTGGATGGAAGTAGCACCG 60.462 60.000 0.00 0.00 0.00 4.94
1617 1621 0.618458 TGGTGGATGGAAGTAGCACC 59.382 55.000 0.00 0.00 0.00 5.01
1618 1622 2.717639 ATGGTGGATGGAAGTAGCAC 57.282 50.000 0.00 0.00 0.00 4.40
1619 1623 5.387113 AAATATGGTGGATGGAAGTAGCA 57.613 39.130 0.00 0.00 0.00 3.49
1620 1624 6.321181 TGAAAAATATGGTGGATGGAAGTAGC 59.679 38.462 0.00 0.00 0.00 3.58
1621 1625 7.880160 TGAAAAATATGGTGGATGGAAGTAG 57.120 36.000 0.00 0.00 0.00 2.57
1622 1626 8.281531 AGATGAAAAATATGGTGGATGGAAGTA 58.718 33.333 0.00 0.00 0.00 2.24
1623 1627 7.128077 AGATGAAAAATATGGTGGATGGAAGT 58.872 34.615 0.00 0.00 0.00 3.01
1624 1628 7.592885 AGATGAAAAATATGGTGGATGGAAG 57.407 36.000 0.00 0.00 0.00 3.46
1625 1629 7.231317 GCTAGATGAAAAATATGGTGGATGGAA 59.769 37.037 0.00 0.00 0.00 3.53
1626 1630 6.716628 GCTAGATGAAAAATATGGTGGATGGA 59.283 38.462 0.00 0.00 0.00 3.41
1627 1631 6.718454 AGCTAGATGAAAAATATGGTGGATGG 59.282 38.462 0.00 0.00 0.00 3.51
1628 1632 7.230108 ACAGCTAGATGAAAAATATGGTGGATG 59.770 37.037 16.32 0.00 0.00 3.51
1629 1633 7.293073 ACAGCTAGATGAAAAATATGGTGGAT 58.707 34.615 16.32 0.00 0.00 3.41
1630 1634 6.662755 ACAGCTAGATGAAAAATATGGTGGA 58.337 36.000 16.32 0.00 0.00 4.02
1631 1635 6.949352 ACAGCTAGATGAAAAATATGGTGG 57.051 37.500 16.32 0.00 0.00 4.61
1632 1636 8.892723 TGTAACAGCTAGATGAAAAATATGGTG 58.107 33.333 16.32 0.00 0.00 4.17
1633 1637 8.893727 GTGTAACAGCTAGATGAAAAATATGGT 58.106 33.333 16.32 0.00 36.32 3.55
1634 1638 8.064222 CGTGTAACAGCTAGATGAAAAATATGG 58.936 37.037 16.32 0.00 35.74 2.74
1635 1639 8.604035 ACGTGTAACAGCTAGATGAAAAATATG 58.396 33.333 16.32 4.08 35.74 1.78
1636 1640 8.718102 ACGTGTAACAGCTAGATGAAAAATAT 57.282 30.769 16.32 0.00 35.74 1.28
1637 1641 8.542497 AACGTGTAACAGCTAGATGAAAAATA 57.458 30.769 16.32 0.00 35.74 1.40
1638 1642 7.435068 AACGTGTAACAGCTAGATGAAAAAT 57.565 32.000 16.32 0.00 35.74 1.82
1639 1643 6.854496 AACGTGTAACAGCTAGATGAAAAA 57.146 33.333 16.32 0.00 35.74 1.94
1640 1644 6.854496 AAACGTGTAACAGCTAGATGAAAA 57.146 33.333 16.32 0.00 35.74 2.29
1641 1645 6.924612 TGTAAACGTGTAACAGCTAGATGAAA 59.075 34.615 16.32 0.00 35.74 2.69
1642 1646 6.448852 TGTAAACGTGTAACAGCTAGATGAA 58.551 36.000 16.32 0.00 35.74 2.57
1643 1647 6.016213 TGTAAACGTGTAACAGCTAGATGA 57.984 37.500 16.32 0.00 35.74 2.92
1644 1648 6.522761 GTTGTAAACGTGTAACAGCTAGATG 58.477 40.000 6.41 6.41 36.92 2.90
1645 1649 6.701432 GTTGTAAACGTGTAACAGCTAGAT 57.299 37.500 0.00 0.00 36.92 1.98
1661 1665 8.492415 AGTAGATGATAGGCTATGGTTGTAAA 57.508 34.615 12.68 0.00 0.00 2.01
1662 1666 9.769677 ATAGTAGATGATAGGCTATGGTTGTAA 57.230 33.333 12.68 0.00 0.00 2.41
1663 1667 9.769677 AATAGTAGATGATAGGCTATGGTTGTA 57.230 33.333 12.68 0.00 0.00 2.41
1664 1668 8.535335 CAATAGTAGATGATAGGCTATGGTTGT 58.465 37.037 12.68 0.00 0.00 3.32
1665 1669 8.535335 ACAATAGTAGATGATAGGCTATGGTTG 58.465 37.037 12.68 5.97 0.00 3.77
1666 1670 8.671987 ACAATAGTAGATGATAGGCTATGGTT 57.328 34.615 12.68 0.00 0.00 3.67
1667 1671 8.671987 AACAATAGTAGATGATAGGCTATGGT 57.328 34.615 12.68 0.00 30.13 3.55
1668 1672 9.376075 CAAACAATAGTAGATGATAGGCTATGG 57.624 37.037 12.68 0.00 0.00 2.74
1669 1673 9.935241 ACAAACAATAGTAGATGATAGGCTATG 57.065 33.333 12.68 0.00 0.00 2.23
1671 1675 9.982651 GAACAAACAATAGTAGATGATAGGCTA 57.017 33.333 0.00 0.00 0.00 3.93
1672 1676 8.709308 AGAACAAACAATAGTAGATGATAGGCT 58.291 33.333 0.00 0.00 0.00 4.58
1673 1677 8.894768 AGAACAAACAATAGTAGATGATAGGC 57.105 34.615 0.00 0.00 0.00 3.93
1676 1680 9.890629 AGCAAGAACAAACAATAGTAGATGATA 57.109 29.630 0.00 0.00 0.00 2.15
1677 1681 8.671921 CAGCAAGAACAAACAATAGTAGATGAT 58.328 33.333 0.00 0.00 0.00 2.45
1678 1682 7.119699 CCAGCAAGAACAAACAATAGTAGATGA 59.880 37.037 0.00 0.00 0.00 2.92
1679 1683 7.246311 CCAGCAAGAACAAACAATAGTAGATG 58.754 38.462 0.00 0.00 0.00 2.90
1680 1684 6.127897 GCCAGCAAGAACAAACAATAGTAGAT 60.128 38.462 0.00 0.00 0.00 1.98
1681 1685 5.181245 GCCAGCAAGAACAAACAATAGTAGA 59.819 40.000 0.00 0.00 0.00 2.59
1682 1686 5.393962 GCCAGCAAGAACAAACAATAGTAG 58.606 41.667 0.00 0.00 0.00 2.57
1683 1687 4.217550 GGCCAGCAAGAACAAACAATAGTA 59.782 41.667 0.00 0.00 0.00 1.82
1684 1688 3.005791 GGCCAGCAAGAACAAACAATAGT 59.994 43.478 0.00 0.00 0.00 2.12
1685 1689 3.005684 TGGCCAGCAAGAACAAACAATAG 59.994 43.478 0.00 0.00 0.00 1.73
1686 1690 2.961741 TGGCCAGCAAGAACAAACAATA 59.038 40.909 0.00 0.00 0.00 1.90
1687 1691 1.761784 TGGCCAGCAAGAACAAACAAT 59.238 42.857 0.00 0.00 0.00 2.71
1688 1692 1.189752 TGGCCAGCAAGAACAAACAA 58.810 45.000 0.00 0.00 0.00 2.83
1689 1693 1.134848 GTTGGCCAGCAAGAACAAACA 60.135 47.619 15.64 0.00 0.00 2.83
1690 1694 1.136891 AGTTGGCCAGCAAGAACAAAC 59.863 47.619 22.64 5.52 0.00 2.93
1691 1695 1.408702 GAGTTGGCCAGCAAGAACAAA 59.591 47.619 22.64 0.00 0.00 2.83
1692 1696 1.032014 GAGTTGGCCAGCAAGAACAA 58.968 50.000 22.64 0.00 0.00 2.83
1693 1697 0.106769 TGAGTTGGCCAGCAAGAACA 60.107 50.000 22.64 10.27 0.00 3.18
1694 1698 1.200948 GATGAGTTGGCCAGCAAGAAC 59.799 52.381 22.64 8.73 0.00 3.01
1695 1699 1.202915 TGATGAGTTGGCCAGCAAGAA 60.203 47.619 22.64 4.21 0.00 2.52
1696 1700 0.401356 TGATGAGTTGGCCAGCAAGA 59.599 50.000 22.64 5.00 0.00 3.02
1697 1701 1.134367 CATGATGAGTTGGCCAGCAAG 59.866 52.381 22.64 0.00 33.42 4.01
1698 1702 1.179152 CATGATGAGTTGGCCAGCAA 58.821 50.000 22.64 9.93 33.42 3.91
1699 1703 0.328926 TCATGATGAGTTGGCCAGCA 59.671 50.000 22.64 14.41 34.26 4.41
1700 1704 0.737219 GTCATGATGAGTTGGCCAGC 59.263 55.000 12.39 12.39 0.00 4.85
1701 1705 1.064906 AGGTCATGATGAGTTGGCCAG 60.065 52.381 5.11 0.00 40.17 4.85
1702 1706 0.994247 AGGTCATGATGAGTTGGCCA 59.006 50.000 0.00 0.00 40.17 5.36
1703 1707 1.065199 TCAGGTCATGATGAGTTGGCC 60.065 52.381 0.00 0.00 37.91 5.36
1704 1708 2.012673 GTCAGGTCATGATGAGTTGGC 58.987 52.381 0.00 0.00 40.92 4.52
1705 1709 3.268330 CAGTCAGGTCATGATGAGTTGG 58.732 50.000 0.00 0.00 40.92 3.77
1706 1710 3.683340 CACAGTCAGGTCATGATGAGTTG 59.317 47.826 0.00 4.22 40.92 3.16
1707 1711 3.867600 GCACAGTCAGGTCATGATGAGTT 60.868 47.826 0.00 0.00 40.92 3.01
1708 1712 2.354503 GCACAGTCAGGTCATGATGAGT 60.355 50.000 0.00 0.00 40.92 3.41
1709 1713 2.277969 GCACAGTCAGGTCATGATGAG 58.722 52.381 0.00 0.00 40.92 2.90
1710 1714 1.404583 CGCACAGTCAGGTCATGATGA 60.405 52.381 0.00 0.00 40.92 2.92
1711 1715 1.004595 CGCACAGTCAGGTCATGATG 58.995 55.000 0.00 0.00 40.92 3.07
1712 1716 0.610174 ACGCACAGTCAGGTCATGAT 59.390 50.000 0.00 0.00 40.92 2.45
1713 1717 0.319813 CACGCACAGTCAGGTCATGA 60.320 55.000 0.00 0.00 34.79 3.07
1714 1718 1.904852 GCACGCACAGTCAGGTCATG 61.905 60.000 0.00 0.00 0.00 3.07
1715 1719 1.669115 GCACGCACAGTCAGGTCAT 60.669 57.895 0.00 0.00 0.00 3.06
1716 1720 2.280119 GCACGCACAGTCAGGTCA 60.280 61.111 0.00 0.00 0.00 4.02
1717 1721 3.406361 CGCACGCACAGTCAGGTC 61.406 66.667 0.00 0.00 0.00 3.85
1718 1722 4.969196 CCGCACGCACAGTCAGGT 62.969 66.667 0.00 0.00 0.00 4.00
1719 1723 4.969196 ACCGCACGCACAGTCAGG 62.969 66.667 0.00 0.00 33.95 3.86
1720 1724 3.705638 CACCGCACGCACAGTCAG 61.706 66.667 0.00 0.00 0.00 3.51
1721 1725 3.724914 TTCACCGCACGCACAGTCA 62.725 57.895 0.00 0.00 0.00 3.41
1722 1726 2.943345 CTTCACCGCACGCACAGTC 61.943 63.158 0.00 0.00 0.00 3.51
1723 1727 2.967076 CTTCACCGCACGCACAGT 60.967 61.111 0.00 0.00 0.00 3.55
1724 1728 3.716006 CCTTCACCGCACGCACAG 61.716 66.667 0.00 0.00 0.00 3.66
1725 1729 4.539083 ACCTTCACCGCACGCACA 62.539 61.111 0.00 0.00 0.00 4.57
1726 1730 4.012895 CACCTTCACCGCACGCAC 62.013 66.667 0.00 0.00 0.00 5.34
1727 1731 4.228567 TCACCTTCACCGCACGCA 62.229 61.111 0.00 0.00 0.00 5.24
1728 1732 3.712881 GTCACCTTCACCGCACGC 61.713 66.667 0.00 0.00 0.00 5.34
1729 1733 1.227999 AATGTCACCTTCACCGCACG 61.228 55.000 0.00 0.00 0.00 5.34
1730 1734 0.238289 CAATGTCACCTTCACCGCAC 59.762 55.000 0.00 0.00 0.00 5.34
1731 1735 0.179032 ACAATGTCACCTTCACCGCA 60.179 50.000 0.00 0.00 0.00 5.69
1732 1736 0.951558 AACAATGTCACCTTCACCGC 59.048 50.000 0.00 0.00 0.00 5.68
1733 1737 3.186409 CAGTAACAATGTCACCTTCACCG 59.814 47.826 0.00 0.00 0.00 4.94
1734 1738 4.024048 CACAGTAACAATGTCACCTTCACC 60.024 45.833 0.00 0.00 0.00 4.02
1735 1739 4.024048 CCACAGTAACAATGTCACCTTCAC 60.024 45.833 0.00 0.00 0.00 3.18
1736 1740 4.133820 CCACAGTAACAATGTCACCTTCA 58.866 43.478 0.00 0.00 0.00 3.02
1737 1741 4.385825 TCCACAGTAACAATGTCACCTTC 58.614 43.478 0.00 0.00 0.00 3.46
1738 1742 4.141482 ACTCCACAGTAACAATGTCACCTT 60.141 41.667 0.00 0.00 0.00 3.50
1739 1743 3.391296 ACTCCACAGTAACAATGTCACCT 59.609 43.478 0.00 0.00 0.00 4.00
1740 1744 3.498397 CACTCCACAGTAACAATGTCACC 59.502 47.826 0.00 0.00 0.00 4.02
1741 1745 4.377021 TCACTCCACAGTAACAATGTCAC 58.623 43.478 0.00 0.00 0.00 3.67
1742 1746 4.100963 ACTCACTCCACAGTAACAATGTCA 59.899 41.667 0.00 0.00 0.00 3.58
1743 1747 4.449068 CACTCACTCCACAGTAACAATGTC 59.551 45.833 0.00 0.00 0.00 3.06
1744 1748 4.380531 CACTCACTCCACAGTAACAATGT 58.619 43.478 0.00 0.00 0.00 2.71
1745 1749 3.187227 GCACTCACTCCACAGTAACAATG 59.813 47.826 0.00 0.00 0.00 2.82
1746 1750 3.181455 TGCACTCACTCCACAGTAACAAT 60.181 43.478 0.00 0.00 0.00 2.71
1747 1751 2.169561 TGCACTCACTCCACAGTAACAA 59.830 45.455 0.00 0.00 0.00 2.83
1748 1752 1.760029 TGCACTCACTCCACAGTAACA 59.240 47.619 0.00 0.00 0.00 2.41
1749 1753 2.526304 TGCACTCACTCCACAGTAAC 57.474 50.000 0.00 0.00 0.00 2.50
1750 1754 2.871637 GCATGCACTCACTCCACAGTAA 60.872 50.000 14.21 0.00 0.00 2.24
1751 1755 1.338105 GCATGCACTCACTCCACAGTA 60.338 52.381 14.21 0.00 0.00 2.74
1752 1756 0.604780 GCATGCACTCACTCCACAGT 60.605 55.000 14.21 0.00 0.00 3.55
1753 1757 0.604511 TGCATGCACTCACTCCACAG 60.605 55.000 18.46 0.00 0.00 3.66
1754 1758 0.886043 GTGCATGCACTCACTCCACA 60.886 55.000 37.48 2.47 43.12 4.17
1755 1759 0.886043 TGTGCATGCACTCACTCCAC 60.886 55.000 41.43 19.87 46.30 4.02
1756 1760 0.037160 ATGTGCATGCACTCACTCCA 59.963 50.000 41.43 25.66 46.30 3.86
1757 1761 0.731417 GATGTGCATGCACTCACTCC 59.269 55.000 41.43 23.70 46.30 3.85
1758 1762 1.445871 TGATGTGCATGCACTCACTC 58.554 50.000 41.43 31.51 46.30 3.51
1759 1763 2.124277 ATGATGTGCATGCACTCACT 57.876 45.000 41.43 27.39 46.30 3.41
1760 1764 2.679336 TGTATGATGTGCATGCACTCAC 59.321 45.455 41.43 31.85 43.39 3.51
1761 1765 2.988570 TGTATGATGTGCATGCACTCA 58.011 42.857 41.43 37.37 43.39 3.41
1765 1769 5.136816 AGTTTTTGTATGATGTGCATGCA 57.863 34.783 18.46 18.46 45.99 3.96
1766 1770 7.579589 TTAAGTTTTTGTATGATGTGCATGC 57.420 32.000 11.82 11.82 39.71 4.06
1768 1772 9.926158 TGAATTAAGTTTTTGTATGATGTGCAT 57.074 25.926 0.00 0.00 41.08 3.96
1769 1773 9.409312 CTGAATTAAGTTTTTGTATGATGTGCA 57.591 29.630 0.00 0.00 0.00 4.57
1770 1774 9.410556 ACTGAATTAAGTTTTTGTATGATGTGC 57.589 29.630 0.00 0.00 0.00 4.57
1779 1783 9.260002 CATGCCTTTACTGAATTAAGTTTTTGT 57.740 29.630 0.00 0.00 0.00 2.83
1780 1784 8.223100 GCATGCCTTTACTGAATTAAGTTTTTG 58.777 33.333 6.36 0.00 0.00 2.44
1781 1785 7.930865 TGCATGCCTTTACTGAATTAAGTTTTT 59.069 29.630 16.68 0.00 0.00 1.94
1782 1786 7.384932 GTGCATGCCTTTACTGAATTAAGTTTT 59.615 33.333 16.68 0.00 0.00 2.43
1783 1787 6.868339 GTGCATGCCTTTACTGAATTAAGTTT 59.132 34.615 16.68 0.00 0.00 2.66
1784 1788 6.389906 GTGCATGCCTTTACTGAATTAAGTT 58.610 36.000 16.68 0.00 0.00 2.66
1785 1789 5.105756 GGTGCATGCCTTTACTGAATTAAGT 60.106 40.000 16.68 0.00 0.00 2.24
1786 1790 5.343249 GGTGCATGCCTTTACTGAATTAAG 58.657 41.667 16.68 0.00 0.00 1.85
1787 1791 4.142491 CGGTGCATGCCTTTACTGAATTAA 60.142 41.667 16.68 0.00 0.00 1.40
1788 1792 3.376859 CGGTGCATGCCTTTACTGAATTA 59.623 43.478 16.68 0.00 0.00 1.40
1789 1793 2.164219 CGGTGCATGCCTTTACTGAATT 59.836 45.455 16.68 0.00 0.00 2.17
1790 1794 1.745087 CGGTGCATGCCTTTACTGAAT 59.255 47.619 16.68 0.00 0.00 2.57
1791 1795 1.164411 CGGTGCATGCCTTTACTGAA 58.836 50.000 16.68 0.00 0.00 3.02
1792 1796 1.305219 GCGGTGCATGCCTTTACTGA 61.305 55.000 16.68 0.00 0.00 3.41
1793 1797 1.137404 GCGGTGCATGCCTTTACTG 59.863 57.895 16.68 12.63 0.00 2.74
1794 1798 0.251916 TAGCGGTGCATGCCTTTACT 59.748 50.000 16.68 8.79 0.00 2.24
1795 1799 1.091537 TTAGCGGTGCATGCCTTTAC 58.908 50.000 16.68 6.26 0.00 2.01
1796 1800 1.091537 GTTAGCGGTGCATGCCTTTA 58.908 50.000 16.68 0.00 0.00 1.85
1797 1801 1.883021 GTTAGCGGTGCATGCCTTT 59.117 52.632 16.68 0.00 0.00 3.11
1798 1802 2.398554 CGTTAGCGGTGCATGCCTT 61.399 57.895 16.68 0.00 0.00 4.35
1799 1803 2.819595 CGTTAGCGGTGCATGCCT 60.820 61.111 16.68 7.36 0.00 4.75
1800 1804 2.817834 TCGTTAGCGGTGCATGCC 60.818 61.111 16.68 6.42 38.89 4.40
1801 1805 0.804544 TAGTCGTTAGCGGTGCATGC 60.805 55.000 11.82 11.82 38.89 4.06
1802 1806 1.787155 GATAGTCGTTAGCGGTGCATG 59.213 52.381 0.00 0.00 38.89 4.06
1803 1807 1.681793 AGATAGTCGTTAGCGGTGCAT 59.318 47.619 0.00 0.00 38.89 3.96
1804 1808 1.100510 AGATAGTCGTTAGCGGTGCA 58.899 50.000 0.00 0.00 38.89 4.57
1805 1809 2.350580 CCTAGATAGTCGTTAGCGGTGC 60.351 54.545 0.00 0.00 38.89 5.01
1806 1810 3.136763 TCCTAGATAGTCGTTAGCGGTG 58.863 50.000 0.00 0.00 38.89 4.94
1807 1811 3.482156 TCCTAGATAGTCGTTAGCGGT 57.518 47.619 0.00 0.00 38.89 5.68
1808 1812 4.825546 TTTCCTAGATAGTCGTTAGCGG 57.174 45.455 0.00 0.00 38.89 5.52
1809 1813 7.695869 AAAATTTCCTAGATAGTCGTTAGCG 57.304 36.000 0.00 0.00 39.92 4.26
1810 1814 9.525409 TGTAAAATTTCCTAGATAGTCGTTAGC 57.475 33.333 0.00 0.00 0.00 3.09
1812 1816 9.525409 GCTGTAAAATTTCCTAGATAGTCGTTA 57.475 33.333 0.00 0.00 0.00 3.18
1813 1817 7.222224 CGCTGTAAAATTTCCTAGATAGTCGTT 59.778 37.037 0.00 0.00 0.00 3.85
1814 1818 6.696148 CGCTGTAAAATTTCCTAGATAGTCGT 59.304 38.462 0.00 0.00 0.00 4.34
1815 1819 6.696148 ACGCTGTAAAATTTCCTAGATAGTCG 59.304 38.462 0.00 0.00 0.00 4.18
1816 1820 8.328864 CAACGCTGTAAAATTTCCTAGATAGTC 58.671 37.037 0.00 0.00 0.00 2.59
1817 1821 7.822822 ACAACGCTGTAAAATTTCCTAGATAGT 59.177 33.333 0.00 0.00 32.54 2.12
1818 1822 8.116753 CACAACGCTGTAAAATTTCCTAGATAG 58.883 37.037 0.00 0.00 33.22 2.08
1819 1823 7.604927 ACACAACGCTGTAAAATTTCCTAGATA 59.395 33.333 0.00 0.00 33.22 1.98
1820 1824 6.430000 ACACAACGCTGTAAAATTTCCTAGAT 59.570 34.615 0.00 0.00 33.22 1.98
1821 1825 5.761234 ACACAACGCTGTAAAATTTCCTAGA 59.239 36.000 0.00 0.00 33.22 2.43
1822 1826 5.851177 CACACAACGCTGTAAAATTTCCTAG 59.149 40.000 0.00 0.00 33.22 3.02
1823 1827 5.278071 CCACACAACGCTGTAAAATTTCCTA 60.278 40.000 0.00 0.00 33.22 2.94
1824 1828 4.499019 CCACACAACGCTGTAAAATTTCCT 60.499 41.667 0.00 0.00 33.22 3.36
1825 1829 3.733727 CCACACAACGCTGTAAAATTTCC 59.266 43.478 0.00 0.00 33.22 3.13
1826 1830 3.181575 GCCACACAACGCTGTAAAATTTC 59.818 43.478 0.00 0.00 33.22 2.17
1827 1831 3.120041 GCCACACAACGCTGTAAAATTT 58.880 40.909 0.00 0.00 33.22 1.82
1828 1832 2.738135 GCCACACAACGCTGTAAAATT 58.262 42.857 0.00 0.00 33.22 1.82
1829 1833 1.334599 CGCCACACAACGCTGTAAAAT 60.335 47.619 0.00 0.00 33.22 1.82
1830 1834 0.028242 CGCCACACAACGCTGTAAAA 59.972 50.000 0.00 0.00 33.22 1.52
1831 1835 1.090625 ACGCCACACAACGCTGTAAA 61.091 50.000 0.00 0.00 33.22 2.01
1832 1836 0.249363 TACGCCACACAACGCTGTAA 60.249 50.000 0.00 0.00 33.22 2.41
1833 1837 0.665068 CTACGCCACACAACGCTGTA 60.665 55.000 0.00 0.00 33.22 2.74
1834 1838 1.954146 CTACGCCACACAACGCTGT 60.954 57.895 0.00 0.00 35.63 4.40
1835 1839 2.853210 CTACGCCACACAACGCTG 59.147 61.111 0.00 0.00 0.00 5.18
1836 1840 3.041940 GCTACGCCACACAACGCT 61.042 61.111 0.00 0.00 0.00 5.07
1847 1851 1.003718 AGGACCTGTTTGGCTACGC 60.004 57.895 0.00 0.00 40.22 4.42
1848 1852 0.608640 AGAGGACCTGTTTGGCTACG 59.391 55.000 0.00 0.00 40.22 3.51
1849 1853 2.100605 CAGAGGACCTGTTTGGCTAC 57.899 55.000 0.00 0.00 40.22 3.58
1855 1859 7.620094 AGTATTCACTATACAGAGGACCTGTTT 59.380 37.037 0.00 0.00 42.69 2.83
1856 1860 7.126733 AGTATTCACTATACAGAGGACCTGTT 58.873 38.462 0.00 0.00 42.69 3.16
1857 1861 6.674573 AGTATTCACTATACAGAGGACCTGT 58.325 40.000 0.00 0.00 45.22 4.00
1858 1862 7.589958 AAGTATTCACTATACAGAGGACCTG 57.410 40.000 0.00 0.00 41.37 4.00
1859 1863 7.826918 GAAGTATTCACTATACAGAGGACCT 57.173 40.000 0.00 0.00 46.62 3.85
1886 1890 9.984190 ACCATGGTTTTAATATAACAACGTTTT 57.016 25.926 13.00 0.00 0.00 2.43
1900 1904 9.584008 TGTAGGTACAAAATACCATGGTTTTAA 57.416 29.630 25.38 4.83 39.99 1.52
1901 1905 9.756571 ATGTAGGTACAAAATACCATGGTTTTA 57.243 29.630 25.38 5.28 39.99 1.52
1902 1906 8.527810 CATGTAGGTACAAAATACCATGGTTTT 58.472 33.333 25.38 19.12 39.99 2.43
1903 1907 7.363443 GCATGTAGGTACAAAATACCATGGTTT 60.363 37.037 25.38 13.21 39.99 3.27
1904 1908 6.096282 GCATGTAGGTACAAAATACCATGGTT 59.904 38.462 25.38 6.17 39.99 3.67
1905 1909 5.592688 GCATGTAGGTACAAAATACCATGGT 59.407 40.000 23.55 23.55 39.99 3.55
1906 1910 5.827797 AGCATGTAGGTACAAAATACCATGG 59.172 40.000 11.19 11.19 39.99 3.66
1907 1911 6.942532 AGCATGTAGGTACAAAATACCATG 57.057 37.500 5.93 2.57 39.99 3.66
1908 1912 9.640952 ATTTAGCATGTAGGTACAAAATACCAT 57.359 29.630 5.93 0.00 39.99 3.55
1909 1913 9.469097 AATTTAGCATGTAGGTACAAAATACCA 57.531 29.630 5.93 0.00 39.99 3.25
1958 1962 9.944663 CTGTTTGATAGCAAAGTACTACAAAAA 57.055 29.630 6.36 0.00 44.12 1.94
1959 1963 8.564574 CCTGTTTGATAGCAAAGTACTACAAAA 58.435 33.333 6.36 0.00 44.12 2.44
1960 1964 7.174253 CCCTGTTTGATAGCAAAGTACTACAAA 59.826 37.037 6.36 0.00 44.12 2.83
1961 1965 6.653320 CCCTGTTTGATAGCAAAGTACTACAA 59.347 38.462 6.36 0.00 44.12 2.41
1962 1966 6.170506 CCCTGTTTGATAGCAAAGTACTACA 58.829 40.000 6.36 0.00 44.12 2.74
1963 1967 5.064834 GCCCTGTTTGATAGCAAAGTACTAC 59.935 44.000 6.36 0.00 44.12 2.73
1964 1968 5.183228 GCCCTGTTTGATAGCAAAGTACTA 58.817 41.667 6.36 0.00 44.12 1.82
1965 1969 4.010349 GCCCTGTTTGATAGCAAAGTACT 58.990 43.478 6.36 0.00 44.12 2.73
1966 1970 3.128764 GGCCCTGTTTGATAGCAAAGTAC 59.871 47.826 6.36 0.00 44.12 2.73
1967 1971 3.010138 AGGCCCTGTTTGATAGCAAAGTA 59.990 43.478 6.36 0.00 44.12 2.24
1968 1972 2.171003 GGCCCTGTTTGATAGCAAAGT 58.829 47.619 6.36 0.00 44.12 2.66
1969 1973 2.450476 AGGCCCTGTTTGATAGCAAAG 58.550 47.619 6.36 0.00 44.12 2.77
1970 1974 2.603075 AGGCCCTGTTTGATAGCAAA 57.397 45.000 1.13 1.13 41.47 3.68
1971 1975 2.603075 AAGGCCCTGTTTGATAGCAA 57.397 45.000 0.00 0.00 0.00 3.91
1972 1976 3.730215 TTAAGGCCCTGTTTGATAGCA 57.270 42.857 0.00 0.00 0.00 3.49
1973 1977 3.570125 GGATTAAGGCCCTGTTTGATAGC 59.430 47.826 0.00 0.00 0.00 2.97
1974 1978 4.580580 GTGGATTAAGGCCCTGTTTGATAG 59.419 45.833 0.00 0.00 0.00 2.08
1975 1979 4.017958 TGTGGATTAAGGCCCTGTTTGATA 60.018 41.667 0.00 0.00 0.00 2.15
1976 1980 3.245586 TGTGGATTAAGGCCCTGTTTGAT 60.246 43.478 0.00 0.00 0.00 2.57
1977 1981 2.109128 TGTGGATTAAGGCCCTGTTTGA 59.891 45.455 0.00 0.00 0.00 2.69
1978 1982 2.524306 TGTGGATTAAGGCCCTGTTTG 58.476 47.619 0.00 0.00 0.00 2.93
1979 1983 2.990740 TGTGGATTAAGGCCCTGTTT 57.009 45.000 0.00 0.00 0.00 2.83
1980 1984 2.042979 ACATGTGGATTAAGGCCCTGTT 59.957 45.455 0.00 0.00 0.00 3.16
1981 1985 1.640670 ACATGTGGATTAAGGCCCTGT 59.359 47.619 0.00 0.00 0.00 4.00
1982 1986 2.442236 ACATGTGGATTAAGGCCCTG 57.558 50.000 0.00 0.00 0.00 4.45
1983 1987 3.751893 GCATACATGTGGATTAAGGCCCT 60.752 47.826 9.11 0.00 0.00 5.19
1984 1988 2.558359 GCATACATGTGGATTAAGGCCC 59.442 50.000 9.11 0.00 0.00 5.80
1985 1989 3.221771 TGCATACATGTGGATTAAGGCC 58.778 45.455 9.11 0.00 0.00 5.19
1986 1990 3.254166 CCTGCATACATGTGGATTAAGGC 59.746 47.826 9.11 0.63 0.00 4.35
1987 1991 4.464008 ACCTGCATACATGTGGATTAAGG 58.536 43.478 9.11 10.14 0.00 2.69
1988 1992 6.455360 AAACCTGCATACATGTGGATTAAG 57.545 37.500 9.11 0.00 0.00 1.85
1989 1993 6.849085 AAAACCTGCATACATGTGGATTAA 57.151 33.333 9.11 0.00 0.00 1.40
1990 1994 6.663093 AGAAAAACCTGCATACATGTGGATTA 59.337 34.615 9.11 0.00 0.00 1.75
1991 1995 5.481473 AGAAAAACCTGCATACATGTGGATT 59.519 36.000 9.11 0.00 0.00 3.01
1992 1996 5.018809 AGAAAAACCTGCATACATGTGGAT 58.981 37.500 9.11 0.00 0.00 3.41
1993 1997 4.406456 AGAAAAACCTGCATACATGTGGA 58.594 39.130 9.11 0.00 0.00 4.02
1994 1998 4.789012 AGAAAAACCTGCATACATGTGG 57.211 40.909 9.11 2.76 0.00 4.17
1995 1999 6.215121 TCAAAGAAAAACCTGCATACATGTG 58.785 36.000 9.11 0.00 0.00 3.21
1996 2000 6.265196 TCTCAAAGAAAAACCTGCATACATGT 59.735 34.615 2.69 2.69 0.00 3.21
1997 2001 6.680810 TCTCAAAGAAAAACCTGCATACATG 58.319 36.000 0.00 0.00 0.00 3.21
1998 2002 6.899393 TCTCAAAGAAAAACCTGCATACAT 57.101 33.333 0.00 0.00 0.00 2.29
1999 2003 6.707440 TTCTCAAAGAAAAACCTGCATACA 57.293 33.333 0.00 0.00 29.99 2.29
2000 2004 7.425606 TCTTTCTCAAAGAAAAACCTGCATAC 58.574 34.615 3.92 0.00 42.95 2.39
2001 2005 7.285401 ACTCTTTCTCAAAGAAAAACCTGCATA 59.715 33.333 3.92 0.00 46.13 3.14
2002 2006 6.097412 ACTCTTTCTCAAAGAAAAACCTGCAT 59.903 34.615 3.92 0.00 46.13 3.96
2003 2007 5.418840 ACTCTTTCTCAAAGAAAAACCTGCA 59.581 36.000 3.92 0.00 46.13 4.41
2004 2008 5.895928 ACTCTTTCTCAAAGAAAAACCTGC 58.104 37.500 3.92 0.00 46.13 4.85
2005 2009 8.246871 AGAAACTCTTTCTCAAAGAAAAACCTG 58.753 33.333 3.92 0.00 46.62 4.00
2006 2010 8.354711 AGAAACTCTTTCTCAAAGAAAAACCT 57.645 30.769 3.92 0.00 46.62 3.50
2047 2051 1.038130 CGAGTCGAACCATCCTCCCT 61.038 60.000 6.73 0.00 0.00 4.20
2069 2073 3.412386 CCTGAGTGGTCCTCGAATTTTT 58.588 45.455 0.00 0.00 43.64 1.94
2070 2074 2.290323 CCCTGAGTGGTCCTCGAATTTT 60.290 50.000 0.00 0.00 43.64 1.82
2139 2143 2.509336 CGGTGCCGCTTCCACTAG 60.509 66.667 0.00 0.00 33.78 2.57
2373 2377 4.766891 TCCATCCACATTGGTTTTCTTCTC 59.233 41.667 0.00 0.00 39.03 2.87
2385 2389 6.013553 TGGATTTGAACATTTCCATCCACATT 60.014 34.615 10.73 0.00 40.71 2.71
2437 2441 4.580580 AGTCAATTCCTTGAACTTGTCCAC 59.419 41.667 0.00 0.00 42.85 4.02
2521 2525 9.297586 GCCATATCTCGTAATCGAAATATACAA 57.702 33.333 0.00 0.00 45.61 2.41
2524 2528 8.899771 TCTGCCATATCTCGTAATCGAAATATA 58.100 33.333 0.00 0.00 45.61 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.