Multiple sequence alignment - TraesCS5B01G060800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G060800 chr5B 100.000 4907 0 0 1 4907 68189919 68185013 0.000000e+00 9062.0
1 TraesCS5B01G060800 chr5B 89.768 2502 198 22 1479 3970 67959850 67962303 0.000000e+00 3149.0
2 TraesCS5B01G060800 chr5B 90.209 623 50 8 832 1450 67959241 67959856 0.000000e+00 802.0
3 TraesCS5B01G060800 chr5B 95.122 164 7 1 375 538 67958649 67958811 1.750000e-64 257.0
4 TraesCS5B01G060800 chr5B 86.900 229 23 6 4042 4266 68176793 68176568 2.930000e-62 250.0
5 TraesCS5B01G060800 chr5B 93.478 138 8 1 676 812 618714609 618714746 2.320000e-48 204.0
6 TraesCS5B01G060800 chr5B 85.833 120 11 5 524 639 67959002 67959119 6.670000e-24 122.0
7 TraesCS5B01G060800 chr5D 94.911 3144 113 13 1802 4903 62299031 62302169 0.000000e+00 4876.0
8 TraesCS5B01G060800 chr5D 89.529 2464 198 20 1486 3934 62522168 62519750 0.000000e+00 3066.0
9 TraesCS5B01G060800 chr5D 87.751 947 73 27 832 1775 62522787 62521881 0.000000e+00 1066.0
10 TraesCS5B01G060800 chr5D 96.440 618 22 0 833 1450 62298120 62298737 0.000000e+00 1020.0
11 TraesCS5B01G060800 chr5D 95.302 298 12 1 1479 1774 62298731 62299028 5.750000e-129 472.0
12 TraesCS5B01G060800 chr5D 94.332 247 12 2 375 621 62297729 62297973 1.290000e-100 377.0
13 TraesCS5B01G060800 chr5D 90.370 270 19 5 375 639 62523176 62522909 1.010000e-91 348.0
14 TraesCS5B01G060800 chr5D 92.308 143 10 1 676 817 162219768 162219910 8.330000e-48 202.0
15 TraesCS5B01G060800 chr5D 91.803 61 5 0 3930 3990 62519585 62519525 8.750000e-13 86.1
16 TraesCS5B01G060800 chr5A 94.936 2567 100 5 1479 4041 52342175 52344715 0.000000e+00 3993.0
17 TraesCS5B01G060800 chr5A 89.833 2459 194 20 1479 3934 52417088 52414683 0.000000e+00 3105.0
18 TraesCS5B01G060800 chr5A 89.989 879 69 7 4042 4905 52346252 52347126 0.000000e+00 1118.0
19 TraesCS5B01G060800 chr5A 96.284 619 22 1 833 1450 52341563 52342181 0.000000e+00 1014.0
20 TraesCS5B01G060800 chr5A 90.127 628 48 7 832 1450 52417704 52417082 0.000000e+00 804.0
21 TraesCS5B01G060800 chr5A 92.453 265 15 4 375 639 52341181 52341440 1.670000e-99 374.0
22 TraesCS5B01G060800 chr5A 91.822 269 16 4 375 639 52418092 52417826 2.160000e-98 370.0
23 TraesCS5B01G060800 chr5A 86.420 243 11 8 4044 4266 52348996 52349236 3.790000e-61 246.0
24 TraesCS5B01G060800 chr2A 79.320 1707 290 32 2317 3990 589791523 589793199 0.000000e+00 1138.0
25 TraesCS5B01G060800 chr2A 82.518 818 134 5 3091 3907 590639021 590639830 0.000000e+00 710.0
26 TraesCS5B01G060800 chr2A 85.832 487 67 2 2322 2807 589795700 589796185 2.620000e-142 516.0
27 TraesCS5B01G060800 chr2A 79.070 430 67 10 4261 4687 356711501 356711910 1.740000e-69 274.0
28 TraesCS5B01G060800 chr2A 95.489 133 5 1 676 807 223772951 223772819 1.380000e-50 211.0
29 TraesCS5B01G060800 chr2B 79.288 1574 284 37 2322 3875 526379637 526381188 0.000000e+00 1062.0
30 TraesCS5B01G060800 chr2B 86.066 488 64 2 2322 2806 525826375 525826861 5.630000e-144 521.0
31 TraesCS5B01G060800 chr2B 92.806 139 10 0 679 817 22079694 22079556 8.330000e-48 202.0
32 TraesCS5B01G060800 chr2D 79.043 1589 275 40 2322 3875 446603633 446605198 0.000000e+00 1037.0
33 TraesCS5B01G060800 chr2D 86.186 485 66 1 2322 2806 446318666 446319149 1.560000e-144 523.0
34 TraesCS5B01G060800 chr2D 80.843 261 49 1 1186 1446 446600185 446600444 2.320000e-48 204.0
35 TraesCS5B01G060800 chr2D 75.796 157 38 0 2821 2977 446325680 446325836 4.070000e-11 80.5
36 TraesCS5B01G060800 chr6D 81.303 476 82 6 4245 4718 140153316 140152846 3.580000e-101 379.0
37 TraesCS5B01G060800 chr3A 83.505 388 60 3 4256 4643 652398453 652398070 4.670000e-95 359.0
38 TraesCS5B01G060800 chr3D 75.466 644 125 27 4232 4863 38647058 38646436 2.890000e-72 283.0
39 TraesCS5B01G060800 chr4B 77.551 441 80 15 4232 4660 566547833 566548266 1.050000e-61 248.0
40 TraesCS5B01G060800 chr6A 76.642 411 77 13 4256 4660 270434834 270435231 4.980000e-50 209.0
41 TraesCS5B01G060800 chr6A 93.478 138 8 1 676 812 505102738 505102601 2.320000e-48 204.0
42 TraesCS5B01G060800 chr6B 93.525 139 9 0 679 817 539454557 539454695 1.790000e-49 207.0
43 TraesCS5B01G060800 chr1A 94.776 134 6 1 675 807 481651109 481650976 1.790000e-49 207.0
44 TraesCS5B01G060800 chr1A 93.478 138 8 1 676 812 529068232 529068369 2.320000e-48 204.0
45 TraesCS5B01G060800 chr7D 92.308 143 10 1 676 817 425229706 425229848 8.330000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G060800 chr5B 68185013 68189919 4906 True 9062.000000 9062 100.00000 1 4907 1 chr5B.!!$R2 4906
1 TraesCS5B01G060800 chr5B 67958649 67962303 3654 False 1082.500000 3149 90.23300 375 3970 4 chr5B.!!$F2 3595
2 TraesCS5B01G060800 chr5D 62297729 62302169 4440 False 1686.250000 4876 95.24625 375 4903 4 chr5D.!!$F2 4528
3 TraesCS5B01G060800 chr5D 62519525 62523176 3651 True 1141.525000 3066 89.86325 375 3990 4 chr5D.!!$R1 3615
4 TraesCS5B01G060800 chr5A 52414683 52418092 3409 True 1426.333333 3105 90.59400 375 3934 3 chr5A.!!$R1 3559
5 TraesCS5B01G060800 chr5A 52341181 52349236 8055 False 1349.000000 3993 92.01640 375 4905 5 chr5A.!!$F1 4530
6 TraesCS5B01G060800 chr2A 589791523 589796185 4662 False 827.000000 1138 82.57600 2317 3990 2 chr2A.!!$F3 1673
7 TraesCS5B01G060800 chr2A 590639021 590639830 809 False 710.000000 710 82.51800 3091 3907 1 chr2A.!!$F2 816
8 TraesCS5B01G060800 chr2B 526379637 526381188 1551 False 1062.000000 1062 79.28800 2322 3875 1 chr2B.!!$F2 1553
9 TraesCS5B01G060800 chr2D 446600185 446605198 5013 False 620.500000 1037 79.94300 1186 3875 2 chr2D.!!$F3 2689
10 TraesCS5B01G060800 chr3D 38646436 38647058 622 True 283.000000 283 75.46600 4232 4863 1 chr3D.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.035317 ACGCATCCTGCAACTCTTCA 59.965 50.000 0.00 0.0 45.36 3.02 F
294 295 0.042731 TGAGGAACCTACCCCTCCTG 59.957 60.000 0.00 0.0 46.43 3.86 F
295 296 0.042881 GAGGAACCTACCCCTCCTGT 59.957 60.000 0.00 0.0 42.35 4.00 F
807 1069 0.249398 ATTTTCGGACGGAGGGAGTG 59.751 55.000 0.00 0.0 0.00 3.51 F
1478 1763 0.318955 GCATCACTTGCGCCAAAACT 60.319 50.000 4.18 0.0 42.54 2.66 F
1484 1769 1.068333 ACTTGCGCCAAAACTATGCAG 60.068 47.619 4.18 0.0 36.83 4.41 F
2936 5888 0.928505 TACCGAGGTGGGGACAGATA 59.071 55.000 4.80 0.0 44.46 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1468 1753 0.109132 AAGCTGCATAGTTTTGGCGC 60.109 50.000 0.00 0.00 0.00 6.53 R
1469 1754 1.199789 TGAAGCTGCATAGTTTTGGCG 59.800 47.619 1.02 0.00 0.00 5.69 R
1952 4530 2.091665 CCAGGCTAAATGGTTGGAGGAT 60.092 50.000 0.00 0.00 32.85 3.24 R
2342 5256 1.374758 GTAGGCTTGCAGTGCGAGT 60.375 57.895 28.99 15.76 41.74 4.18 R
2936 5888 0.610174 TGAGAGAGCGAGCCATTGTT 59.390 50.000 0.00 0.00 0.00 2.83 R
3021 5982 2.226912 GGTACGCTACTCTCTATGGCAG 59.773 54.545 0.00 0.00 0.00 4.85 R
4305 9869 0.106708 GGGTATGAGATCAGCGGCAA 59.893 55.000 1.45 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.027131 CACATACATGGACAAACAATAACGG 58.973 40.000 0.00 0.00 0.00 4.44
25 26 5.941058 ACATACATGGACAAACAATAACGGA 59.059 36.000 0.00 0.00 0.00 4.69
26 27 6.093495 ACATACATGGACAAACAATAACGGAG 59.907 38.462 0.00 0.00 0.00 4.63
27 28 3.756434 ACATGGACAAACAATAACGGAGG 59.244 43.478 0.00 0.00 0.00 4.30
28 29 3.773418 TGGACAAACAATAACGGAGGA 57.227 42.857 0.00 0.00 0.00 3.71
29 30 3.670625 TGGACAAACAATAACGGAGGAG 58.329 45.455 0.00 0.00 0.00 3.69
30 31 3.325425 TGGACAAACAATAACGGAGGAGA 59.675 43.478 0.00 0.00 0.00 3.71
31 32 4.202377 TGGACAAACAATAACGGAGGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
32 33 4.392138 GGACAAACAATAACGGAGGAGAAG 59.608 45.833 0.00 0.00 0.00 2.85
33 34 3.751698 ACAAACAATAACGGAGGAGAAGC 59.248 43.478 0.00 0.00 0.00 3.86
34 35 3.983044 AACAATAACGGAGGAGAAGCT 57.017 42.857 0.00 0.00 0.00 3.74
35 36 3.528597 ACAATAACGGAGGAGAAGCTC 57.471 47.619 0.00 0.00 0.00 4.09
36 37 2.159226 ACAATAACGGAGGAGAAGCTCG 60.159 50.000 0.00 0.00 0.00 5.03
37 38 1.033574 ATAACGGAGGAGAAGCTCGG 58.966 55.000 0.00 0.00 0.00 4.63
38 39 1.035932 TAACGGAGGAGAAGCTCGGG 61.036 60.000 0.00 0.00 0.00 5.14
39 40 2.756283 CGGAGGAGAAGCTCGGGT 60.756 66.667 0.00 0.00 0.00 5.28
40 41 1.453379 CGGAGGAGAAGCTCGGGTA 60.453 63.158 0.00 0.00 0.00 3.69
41 42 1.726533 CGGAGGAGAAGCTCGGGTAC 61.727 65.000 0.00 0.00 0.00 3.34
42 43 1.726533 GGAGGAGAAGCTCGGGTACG 61.727 65.000 0.00 0.00 42.74 3.67
58 59 4.246206 CGAGCGACGGCCGACATA 62.246 66.667 35.90 0.00 41.76 2.29
59 60 2.654404 GAGCGACGGCCGACATAC 60.654 66.667 35.90 17.86 41.76 2.39
60 61 3.405592 GAGCGACGGCCGACATACA 62.406 63.158 35.90 0.00 41.76 2.29
61 62 2.279252 GCGACGGCCGACATACAT 60.279 61.111 35.90 7.12 41.76 2.29
62 63 2.585869 GCGACGGCCGACATACATG 61.586 63.158 35.90 13.00 41.76 3.21
63 64 1.949133 CGACGGCCGACATACATGG 60.949 63.158 35.90 7.13 41.76 3.66
64 65 1.440060 GACGGCCGACATACATGGA 59.560 57.895 35.90 0.00 0.00 3.41
65 66 0.874607 GACGGCCGACATACATGGAC 60.875 60.000 35.90 4.01 0.00 4.02
66 67 4.027755 GGCCGACATACATGGACG 57.972 61.111 0.00 0.00 0.00 4.79
67 68 1.594293 GGCCGACATACATGGACGG 60.594 63.158 18.77 18.77 46.38 4.79
68 69 1.440060 GCCGACATACATGGACGGA 59.560 57.895 23.84 0.00 46.48 4.69
69 70 0.874607 GCCGACATACATGGACGGAC 60.875 60.000 23.84 15.43 46.48 4.79
70 71 0.458260 CCGACATACATGGACGGACA 59.542 55.000 18.47 0.00 46.48 4.02
71 72 1.134936 CCGACATACATGGACGGACAA 60.135 52.381 18.47 0.00 46.48 3.18
72 73 2.483013 CCGACATACATGGACGGACAAT 60.483 50.000 18.47 0.00 46.48 2.71
73 74 3.243602 CCGACATACATGGACGGACAATA 60.244 47.826 18.47 0.00 46.48 1.90
74 75 3.734231 CGACATACATGGACGGACAATAC 59.266 47.826 0.00 0.00 0.00 1.89
75 76 3.713288 ACATACATGGACGGACAATACG 58.287 45.455 0.00 0.00 37.36 3.06
76 77 3.382227 ACATACATGGACGGACAATACGA 59.618 43.478 0.00 0.00 34.93 3.43
77 78 2.579207 ACATGGACGGACAATACGAG 57.421 50.000 0.00 0.00 34.93 4.18
78 79 1.136305 ACATGGACGGACAATACGAGG 59.864 52.381 0.00 0.00 34.93 4.63
79 80 1.407618 CATGGACGGACAATACGAGGA 59.592 52.381 0.00 0.00 34.93 3.71
80 81 1.771565 TGGACGGACAATACGAGGAT 58.228 50.000 0.00 0.00 34.93 3.24
81 82 1.679680 TGGACGGACAATACGAGGATC 59.320 52.381 0.00 0.00 34.93 3.36
82 83 1.955080 GGACGGACAATACGAGGATCT 59.045 52.381 0.00 0.00 34.93 2.75
83 84 2.030981 GGACGGACAATACGAGGATCTC 60.031 54.545 0.00 0.00 34.93 2.75
92 93 3.350377 GAGGATCTCGGAGCTCGG 58.650 66.667 14.80 14.80 39.77 4.63
93 94 1.228003 GAGGATCTCGGAGCTCGGA 60.228 63.158 21.29 21.29 39.77 4.55
94 95 1.512156 GAGGATCTCGGAGCTCGGAC 61.512 65.000 19.12 10.30 39.77 4.79
95 96 2.634777 GATCTCGGAGCTCGGACG 59.365 66.667 19.12 11.84 39.77 4.79
96 97 2.899044 GATCTCGGAGCTCGGACGG 61.899 68.421 19.12 11.33 39.77 4.79
101 102 4.500116 GGAGCTCGGACGGCTGAC 62.500 72.222 7.83 0.00 40.40 3.51
102 103 4.500116 GAGCTCGGACGGCTGACC 62.500 72.222 0.00 0.29 40.40 4.02
105 106 3.680786 CTCGGACGGCTGACCACA 61.681 66.667 14.51 0.00 34.57 4.17
106 107 2.994995 TCGGACGGCTGACCACAT 60.995 61.111 14.51 0.00 34.57 3.21
107 108 2.047274 CGGACGGCTGACCACATT 60.047 61.111 14.51 0.00 34.57 2.71
108 109 2.390599 CGGACGGCTGACCACATTG 61.391 63.158 14.51 0.00 34.57 2.82
109 110 2.040544 GGACGGCTGACCACATTGG 61.041 63.158 9.32 0.00 45.02 3.16
110 111 1.003839 GACGGCTGACCACATTGGA 60.004 57.895 0.00 0.00 40.96 3.53
111 112 1.298859 GACGGCTGACCACATTGGAC 61.299 60.000 0.00 0.00 40.96 4.02
112 113 1.302431 CGGCTGACCACATTGGACA 60.302 57.895 0.00 0.00 40.96 4.02
113 114 0.888736 CGGCTGACCACATTGGACAA 60.889 55.000 0.00 0.00 41.31 3.18
114 115 1.327303 GGCTGACCACATTGGACAAA 58.673 50.000 0.00 0.00 41.31 2.83
115 116 1.000274 GGCTGACCACATTGGACAAAC 60.000 52.381 0.00 0.00 41.31 2.93
116 117 1.680735 GCTGACCACATTGGACAAACA 59.319 47.619 0.00 0.00 41.31 2.83
117 118 2.100584 GCTGACCACATTGGACAAACAA 59.899 45.455 0.00 0.00 41.31 2.83
118 119 3.243839 GCTGACCACATTGGACAAACAAT 60.244 43.478 0.00 0.00 41.31 2.71
119 120 4.022416 GCTGACCACATTGGACAAACAATA 60.022 41.667 0.00 0.00 41.31 1.90
120 121 5.508825 GCTGACCACATTGGACAAACAATAA 60.509 40.000 0.00 0.00 41.31 1.40
121 122 5.837437 TGACCACATTGGACAAACAATAAC 58.163 37.500 0.00 0.00 40.96 1.89
122 123 4.865776 ACCACATTGGACAAACAATAACG 58.134 39.130 0.00 0.00 40.96 3.18
123 124 4.233789 CCACATTGGACAAACAATAACGG 58.766 43.478 0.00 0.00 40.96 4.44
124 125 4.022762 CCACATTGGACAAACAATAACGGA 60.023 41.667 0.00 0.00 40.96 4.69
125 126 5.153513 CACATTGGACAAACAATAACGGAG 58.846 41.667 0.00 0.00 38.94 4.63
126 127 4.217550 ACATTGGACAAACAATAACGGAGG 59.782 41.667 0.00 0.00 38.94 4.30
127 128 3.773418 TGGACAAACAATAACGGAGGA 57.227 42.857 0.00 0.00 0.00 3.71
128 129 3.670625 TGGACAAACAATAACGGAGGAG 58.329 45.455 0.00 0.00 0.00 3.69
129 130 3.325425 TGGACAAACAATAACGGAGGAGA 59.675 43.478 0.00 0.00 0.00 3.71
130 131 4.202377 TGGACAAACAATAACGGAGGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
131 132 4.392138 GGACAAACAATAACGGAGGAGAAG 59.608 45.833 0.00 0.00 0.00 2.85
132 133 3.751698 ACAAACAATAACGGAGGAGAAGC 59.248 43.478 0.00 0.00 0.00 3.86
133 134 3.983044 AACAATAACGGAGGAGAAGCT 57.017 42.857 0.00 0.00 0.00 3.74
134 135 3.983044 ACAATAACGGAGGAGAAGCTT 57.017 42.857 0.00 0.00 0.00 3.74
135 136 3.600388 ACAATAACGGAGGAGAAGCTTG 58.400 45.455 2.10 0.00 0.00 4.01
136 137 2.939103 CAATAACGGAGGAGAAGCTTGG 59.061 50.000 2.10 0.00 0.00 3.61
137 138 1.933021 TAACGGAGGAGAAGCTTGGA 58.067 50.000 2.10 0.00 0.00 3.53
138 139 1.280457 AACGGAGGAGAAGCTTGGAT 58.720 50.000 2.10 0.00 0.00 3.41
139 140 2.160721 ACGGAGGAGAAGCTTGGATA 57.839 50.000 2.10 0.00 0.00 2.59
140 141 1.757699 ACGGAGGAGAAGCTTGGATAC 59.242 52.381 2.10 0.00 0.00 2.24
141 142 1.269309 CGGAGGAGAAGCTTGGATACG 60.269 57.143 2.10 0.00 42.51 3.06
142 143 2.032620 GGAGGAGAAGCTTGGATACGA 58.967 52.381 2.10 0.00 42.51 3.43
157 158 3.913573 CGAGCGACGGCGGAATTG 61.914 66.667 15.06 0.00 46.35 2.32
158 159 2.508439 GAGCGACGGCGGAATTGA 60.508 61.111 15.06 0.00 46.35 2.57
159 160 1.883084 GAGCGACGGCGGAATTGAT 60.883 57.895 15.06 0.00 46.35 2.57
160 161 1.429148 GAGCGACGGCGGAATTGATT 61.429 55.000 15.06 0.00 46.35 2.57
161 162 1.011131 GCGACGGCGGAATTGATTC 60.011 57.895 15.06 0.00 38.16 2.52
162 163 1.701545 GCGACGGCGGAATTGATTCA 61.702 55.000 15.06 0.00 38.53 2.57
163 164 0.301687 CGACGGCGGAATTGATTCAG 59.698 55.000 13.24 3.19 38.53 3.02
164 165 1.651987 GACGGCGGAATTGATTCAGA 58.348 50.000 13.24 0.00 38.53 3.27
165 166 2.213499 GACGGCGGAATTGATTCAGAT 58.787 47.619 13.24 0.00 38.53 2.90
166 167 2.614057 GACGGCGGAATTGATTCAGATT 59.386 45.455 13.24 0.00 38.53 2.40
167 168 3.804036 ACGGCGGAATTGATTCAGATTA 58.196 40.909 13.24 0.00 38.53 1.75
168 169 4.196193 ACGGCGGAATTGATTCAGATTAA 58.804 39.130 13.24 0.00 38.53 1.40
169 170 4.821805 ACGGCGGAATTGATTCAGATTAAT 59.178 37.500 13.24 0.00 38.53 1.40
170 171 5.299279 ACGGCGGAATTGATTCAGATTAATT 59.701 36.000 13.24 0.00 38.53 1.40
171 172 5.853282 CGGCGGAATTGATTCAGATTAATTC 59.147 40.000 0.00 7.65 42.80 2.17
172 173 6.293626 CGGCGGAATTGATTCAGATTAATTCT 60.294 38.462 0.00 0.00 42.96 2.40
173 174 7.080724 GGCGGAATTGATTCAGATTAATTCTC 58.919 38.462 13.04 7.88 42.96 2.87
174 175 6.794158 GCGGAATTGATTCAGATTAATTCTCG 59.206 38.462 13.04 14.14 42.96 4.04
175 176 7.519008 GCGGAATTGATTCAGATTAATTCTCGT 60.519 37.037 17.55 0.00 42.96 4.18
176 177 8.006590 CGGAATTGATTCAGATTAATTCTCGTC 58.993 37.037 13.04 1.38 42.96 4.20
177 178 9.050601 GGAATTGATTCAGATTAATTCTCGTCT 57.949 33.333 13.04 0.00 42.96 4.18
181 182 8.858003 TGATTCAGATTAATTCTCGTCTACAC 57.142 34.615 0.00 0.00 29.93 2.90
183 184 5.271625 TCAGATTAATTCTCGTCTACACGC 58.728 41.667 0.00 0.00 46.28 5.34
184 185 4.144902 CAGATTAATTCTCGTCTACACGCG 59.855 45.833 3.53 3.53 46.28 6.01
185 186 2.463553 TAATTCTCGTCTACACGCGG 57.536 50.000 12.47 1.27 46.28 6.46
186 187 0.524862 AATTCTCGTCTACACGCGGT 59.475 50.000 12.47 8.38 46.28 5.68
187 188 0.098376 ATTCTCGTCTACACGCGGTC 59.902 55.000 12.47 0.00 46.28 4.79
188 189 1.229975 TTCTCGTCTACACGCGGTCA 61.230 55.000 12.47 0.00 46.28 4.02
189 190 1.208358 CTCGTCTACACGCGGTCAA 59.792 57.895 12.47 0.00 46.28 3.18
190 191 0.179171 CTCGTCTACACGCGGTCAAT 60.179 55.000 12.47 0.00 46.28 2.57
191 192 0.179181 TCGTCTACACGCGGTCAATC 60.179 55.000 12.47 0.00 46.28 2.67
192 193 0.179171 CGTCTACACGCGGTCAATCT 60.179 55.000 12.47 0.00 39.69 2.40
193 194 1.269166 GTCTACACGCGGTCAATCTG 58.731 55.000 12.47 0.00 0.00 2.90
194 195 1.135489 GTCTACACGCGGTCAATCTGA 60.135 52.381 12.47 0.00 0.00 3.27
195 196 1.542472 TCTACACGCGGTCAATCTGAA 59.458 47.619 12.47 0.00 0.00 3.02
196 197 2.029739 TCTACACGCGGTCAATCTGAAA 60.030 45.455 12.47 0.00 0.00 2.69
197 198 1.588674 ACACGCGGTCAATCTGAAAA 58.411 45.000 12.47 0.00 0.00 2.29
198 199 1.531149 ACACGCGGTCAATCTGAAAAG 59.469 47.619 12.47 0.00 0.00 2.27
199 200 1.135972 CACGCGGTCAATCTGAAAAGG 60.136 52.381 12.47 0.00 0.00 3.11
200 201 1.270625 ACGCGGTCAATCTGAAAAGGA 60.271 47.619 12.47 0.00 0.00 3.36
201 202 1.128692 CGCGGTCAATCTGAAAAGGAC 59.871 52.381 0.00 0.00 0.00 3.85
202 203 2.427506 GCGGTCAATCTGAAAAGGACT 58.572 47.619 0.00 0.00 0.00 3.85
203 204 2.814336 GCGGTCAATCTGAAAAGGACTT 59.186 45.455 0.00 0.00 0.00 3.01
204 205 3.365364 GCGGTCAATCTGAAAAGGACTTG 60.365 47.826 0.00 0.00 0.00 3.16
205 206 3.365364 CGGTCAATCTGAAAAGGACTTGC 60.365 47.826 0.00 0.00 0.00 4.01
206 207 3.365364 GGTCAATCTGAAAAGGACTTGCG 60.365 47.826 0.00 0.00 0.00 4.85
207 208 2.813754 TCAATCTGAAAAGGACTTGCGG 59.186 45.455 0.00 0.00 0.00 5.69
208 209 1.826385 ATCTGAAAAGGACTTGCGGG 58.174 50.000 0.00 0.00 0.00 6.13
209 210 0.762418 TCTGAAAAGGACTTGCGGGA 59.238 50.000 0.00 0.00 0.00 5.14
210 211 1.142060 TCTGAAAAGGACTTGCGGGAA 59.858 47.619 0.00 0.00 0.00 3.97
211 212 1.537202 CTGAAAAGGACTTGCGGGAAG 59.463 52.381 7.78 7.78 37.73 3.46
212 213 1.142060 TGAAAAGGACTTGCGGGAAGA 59.858 47.619 16.51 0.00 35.42 2.87
213 214 1.535896 GAAAAGGACTTGCGGGAAGAC 59.464 52.381 16.51 9.66 35.42 3.01
214 215 0.472471 AAAGGACTTGCGGGAAGACA 59.528 50.000 16.51 0.00 35.42 3.41
215 216 0.250338 AAGGACTTGCGGGAAGACAC 60.250 55.000 16.51 5.52 35.42 3.67
216 217 2.027625 GGACTTGCGGGAAGACACG 61.028 63.158 16.51 0.00 46.60 4.49
222 223 3.499737 CGGGAAGACACGCCATGC 61.500 66.667 0.00 0.00 35.74 4.06
223 224 2.359850 GGGAAGACACGCCATGCA 60.360 61.111 0.00 0.00 0.00 3.96
224 225 2.401766 GGGAAGACACGCCATGCAG 61.402 63.158 0.00 0.00 0.00 4.41
225 226 2.482374 GAAGACACGCCATGCAGC 59.518 61.111 0.00 0.00 0.00 5.25
226 227 2.033141 AAGACACGCCATGCAGCT 59.967 55.556 0.00 0.00 0.00 4.24
227 228 2.249557 GAAGACACGCCATGCAGCTG 62.250 60.000 10.11 10.11 0.00 4.24
228 229 4.471726 GACACGCCATGCAGCTGC 62.472 66.667 31.89 31.89 42.50 5.25
236 237 2.348620 ATGCAGCTGCGTGAGGAA 59.651 55.556 31.99 14.02 45.83 3.36
237 238 1.744368 ATGCAGCTGCGTGAGGAAG 60.744 57.895 31.99 0.00 45.83 3.46
238 239 2.047844 GCAGCTGCGTGAGGAAGA 60.048 61.111 25.23 0.00 0.00 2.87
239 240 2.099431 GCAGCTGCGTGAGGAAGAG 61.099 63.158 25.23 0.00 0.00 2.85
240 241 1.447489 CAGCTGCGTGAGGAAGAGG 60.447 63.158 0.00 0.00 0.00 3.69
241 242 1.607756 AGCTGCGTGAGGAAGAGGA 60.608 57.895 0.00 0.00 0.00 3.71
242 243 1.153667 GCTGCGTGAGGAAGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
243 244 1.515020 CTGCGTGAGGAAGAGGAGG 59.485 63.158 0.00 0.00 0.00 4.30
244 245 2.185608 GCGTGAGGAAGAGGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
245 246 2.650116 GCGTGAGGAAGAGGAGGCA 61.650 63.158 0.00 0.00 0.00 4.75
246 247 1.515020 CGTGAGGAAGAGGAGGCAG 59.485 63.158 0.00 0.00 0.00 4.85
247 248 1.220477 GTGAGGAAGAGGAGGCAGC 59.780 63.158 0.00 0.00 0.00 5.25
248 249 2.354401 TGAGGAAGAGGAGGCAGCG 61.354 63.158 0.00 0.00 0.00 5.18
249 250 3.731653 GAGGAAGAGGAGGCAGCGC 62.732 68.421 0.00 0.00 0.00 5.92
250 251 3.780173 GGAAGAGGAGGCAGCGCT 61.780 66.667 2.64 2.64 0.00 5.92
251 252 2.511145 GAAGAGGAGGCAGCGCTG 60.511 66.667 32.83 32.83 0.00 5.18
252 253 4.093291 AAGAGGAGGCAGCGCTGG 62.093 66.667 36.47 19.58 0.00 4.85
267 268 4.657408 TGGCCACGCATCCTGCAA 62.657 61.111 0.00 0.00 45.36 4.08
268 269 4.120331 GGCCACGCATCCTGCAAC 62.120 66.667 0.00 0.00 45.36 4.17
269 270 3.058160 GCCACGCATCCTGCAACT 61.058 61.111 0.00 0.00 45.36 3.16
270 271 3.044059 GCCACGCATCCTGCAACTC 62.044 63.158 0.00 0.00 45.36 3.01
271 272 1.376424 CCACGCATCCTGCAACTCT 60.376 57.895 0.00 0.00 45.36 3.24
272 273 0.957395 CCACGCATCCTGCAACTCTT 60.957 55.000 0.00 0.00 45.36 2.85
273 274 0.445436 CACGCATCCTGCAACTCTTC 59.555 55.000 0.00 0.00 45.36 2.87
274 275 0.035317 ACGCATCCTGCAACTCTTCA 59.965 50.000 0.00 0.00 45.36 3.02
275 276 1.339438 ACGCATCCTGCAACTCTTCAT 60.339 47.619 0.00 0.00 45.36 2.57
276 277 1.063616 CGCATCCTGCAACTCTTCATG 59.936 52.381 0.00 0.00 45.36 3.07
277 278 2.362736 GCATCCTGCAACTCTTCATGA 58.637 47.619 0.00 0.00 44.26 3.07
278 279 2.355132 GCATCCTGCAACTCTTCATGAG 59.645 50.000 0.00 0.00 44.26 2.90
279 280 2.775911 TCCTGCAACTCTTCATGAGG 57.224 50.000 0.00 0.00 46.72 3.86
280 281 2.259917 TCCTGCAACTCTTCATGAGGA 58.740 47.619 7.38 7.38 46.72 3.71
281 282 2.639347 TCCTGCAACTCTTCATGAGGAA 59.361 45.455 9.04 0.00 46.72 3.36
282 283 2.746362 CCTGCAACTCTTCATGAGGAAC 59.254 50.000 9.04 0.22 46.72 3.62
283 284 2.746362 CTGCAACTCTTCATGAGGAACC 59.254 50.000 9.04 0.00 46.72 3.62
284 285 2.373169 TGCAACTCTTCATGAGGAACCT 59.627 45.455 9.04 0.00 46.72 3.50
285 286 3.582647 TGCAACTCTTCATGAGGAACCTA 59.417 43.478 9.04 0.00 46.72 3.08
286 287 3.935828 GCAACTCTTCATGAGGAACCTAC 59.064 47.826 9.04 0.00 46.72 3.18
287 288 4.508662 CAACTCTTCATGAGGAACCTACC 58.491 47.826 9.04 0.00 46.72 3.18
288 289 3.108376 ACTCTTCATGAGGAACCTACCC 58.892 50.000 9.04 0.00 46.72 3.69
289 290 2.436173 CTCTTCATGAGGAACCTACCCC 59.564 54.545 9.04 0.00 39.08 4.95
290 291 2.045885 TCTTCATGAGGAACCTACCCCT 59.954 50.000 4.83 0.00 35.02 4.79
291 292 2.176247 TCATGAGGAACCTACCCCTC 57.824 55.000 0.00 0.00 46.99 4.30
292 293 1.132500 CATGAGGAACCTACCCCTCC 58.868 60.000 0.00 0.00 46.43 4.30
293 294 1.027815 ATGAGGAACCTACCCCTCCT 58.972 55.000 0.00 0.00 46.43 3.69
294 295 0.042731 TGAGGAACCTACCCCTCCTG 59.957 60.000 0.00 0.00 46.43 3.86
295 296 0.042881 GAGGAACCTACCCCTCCTGT 59.957 60.000 0.00 0.00 42.35 4.00
296 297 0.252742 AGGAACCTACCCCTCCTGTG 60.253 60.000 0.00 0.00 38.19 3.66
297 298 0.252558 GGAACCTACCCCTCCTGTGA 60.253 60.000 0.00 0.00 0.00 3.58
298 299 1.625508 GGAACCTACCCCTCCTGTGAT 60.626 57.143 0.00 0.00 0.00 3.06
299 300 1.486726 GAACCTACCCCTCCTGTGATG 59.513 57.143 0.00 0.00 0.00 3.07
300 301 0.983378 ACCTACCCCTCCTGTGATGC 60.983 60.000 0.00 0.00 0.00 3.91
301 302 0.982852 CCTACCCCTCCTGTGATGCA 60.983 60.000 0.00 0.00 0.00 3.96
302 303 1.135094 CTACCCCTCCTGTGATGCAT 58.865 55.000 0.00 0.00 0.00 3.96
303 304 1.492176 CTACCCCTCCTGTGATGCATT 59.508 52.381 0.00 0.00 0.00 3.56
304 305 0.706433 ACCCCTCCTGTGATGCATTT 59.294 50.000 0.00 0.00 0.00 2.32
305 306 1.108776 CCCCTCCTGTGATGCATTTG 58.891 55.000 0.00 0.00 0.00 2.32
306 307 0.458669 CCCTCCTGTGATGCATTTGC 59.541 55.000 0.00 0.00 42.50 3.68
320 321 4.691860 GCATTTGCACTGTACTCTTCAT 57.308 40.909 0.00 0.00 41.59 2.57
321 322 5.051891 GCATTTGCACTGTACTCTTCATT 57.948 39.130 0.00 0.00 41.59 2.57
322 323 5.464168 GCATTTGCACTGTACTCTTCATTT 58.536 37.500 0.00 0.00 41.59 2.32
323 324 5.344128 GCATTTGCACTGTACTCTTCATTTG 59.656 40.000 0.00 0.00 41.59 2.32
324 325 4.488126 TTGCACTGTACTCTTCATTTGC 57.512 40.909 0.00 0.00 0.00 3.68
325 326 3.475575 TGCACTGTACTCTTCATTTGCA 58.524 40.909 0.00 0.00 33.99 4.08
326 327 3.250762 TGCACTGTACTCTTCATTTGCAC 59.749 43.478 0.00 0.00 32.56 4.57
327 328 3.499918 GCACTGTACTCTTCATTTGCACT 59.500 43.478 0.00 0.00 0.00 4.40
328 329 4.612259 GCACTGTACTCTTCATTTGCACTG 60.612 45.833 0.00 0.00 0.00 3.66
329 330 4.512944 CACTGTACTCTTCATTTGCACTGT 59.487 41.667 0.00 0.00 0.00 3.55
330 331 5.696270 CACTGTACTCTTCATTTGCACTGTA 59.304 40.000 0.00 0.00 0.00 2.74
331 332 5.696724 ACTGTACTCTTCATTTGCACTGTAC 59.303 40.000 0.00 0.00 0.00 2.90
332 333 5.853936 TGTACTCTTCATTTGCACTGTACT 58.146 37.500 0.00 0.00 32.76 2.73
333 334 6.988522 TGTACTCTTCATTTGCACTGTACTA 58.011 36.000 0.00 0.00 32.76 1.82
334 335 6.866770 TGTACTCTTCATTTGCACTGTACTAC 59.133 38.462 0.00 0.00 32.76 2.73
335 336 5.238583 ACTCTTCATTTGCACTGTACTACC 58.761 41.667 0.00 0.00 0.00 3.18
336 337 4.575885 TCTTCATTTGCACTGTACTACCC 58.424 43.478 0.00 0.00 0.00 3.69
337 338 3.343941 TCATTTGCACTGTACTACCCC 57.656 47.619 0.00 0.00 0.00 4.95
338 339 2.026636 TCATTTGCACTGTACTACCCCC 60.027 50.000 0.00 0.00 0.00 5.40
357 358 4.687901 CCCCCTGTTTTGAGTTTGAAAT 57.312 40.909 0.00 0.00 0.00 2.17
358 359 5.799827 CCCCCTGTTTTGAGTTTGAAATA 57.200 39.130 0.00 0.00 0.00 1.40
359 360 6.358974 CCCCCTGTTTTGAGTTTGAAATAT 57.641 37.500 0.00 0.00 0.00 1.28
360 361 7.475137 CCCCCTGTTTTGAGTTTGAAATATA 57.525 36.000 0.00 0.00 0.00 0.86
361 362 7.547227 CCCCCTGTTTTGAGTTTGAAATATAG 58.453 38.462 0.00 0.00 0.00 1.31
362 363 7.363793 CCCCCTGTTTTGAGTTTGAAATATAGG 60.364 40.741 0.00 0.00 0.00 2.57
363 364 7.363793 CCCCTGTTTTGAGTTTGAAATATAGGG 60.364 40.741 0.00 0.00 35.45 3.53
364 365 7.396055 CCCTGTTTTGAGTTTGAAATATAGGGA 59.604 37.037 0.00 0.00 36.51 4.20
365 366 8.802267 CCTGTTTTGAGTTTGAAATATAGGGAA 58.198 33.333 0.00 0.00 0.00 3.97
639 855 4.124238 GTGCTAGTTGTTGGTACTTGTGA 58.876 43.478 0.00 0.00 0.00 3.58
641 857 5.929992 GTGCTAGTTGTTGGTACTTGTGATA 59.070 40.000 0.00 0.00 0.00 2.15
642 858 6.090898 GTGCTAGTTGTTGGTACTTGTGATAG 59.909 42.308 0.00 0.00 0.00 2.08
643 859 5.581085 GCTAGTTGTTGGTACTTGTGATAGG 59.419 44.000 0.00 0.00 0.00 2.57
644 860 4.906618 AGTTGTTGGTACTTGTGATAGGG 58.093 43.478 0.00 0.00 0.00 3.53
645 861 4.349930 AGTTGTTGGTACTTGTGATAGGGT 59.650 41.667 0.00 0.00 0.00 4.34
646 862 4.546829 TGTTGGTACTTGTGATAGGGTC 57.453 45.455 0.00 0.00 0.00 4.46
647 863 3.904965 TGTTGGTACTTGTGATAGGGTCA 59.095 43.478 0.00 0.00 0.00 4.02
695 957 4.853268 GTAGAAAATACTACCTCCGTCCG 58.147 47.826 0.00 0.00 37.39 4.79
696 958 2.692041 AGAAAATACTACCTCCGTCCGG 59.308 50.000 0.00 0.00 0.00 5.14
697 959 2.442236 AAATACTACCTCCGTCCGGA 57.558 50.000 0.00 0.00 42.90 5.14
698 960 2.442236 AATACTACCTCCGTCCGGAA 57.558 50.000 5.23 0.00 44.66 4.30
699 961 2.442236 ATACTACCTCCGTCCGGAAA 57.558 50.000 5.23 0.00 44.66 3.13
700 962 2.442236 TACTACCTCCGTCCGGAAAT 57.558 50.000 5.23 3.48 44.66 2.17
701 963 2.442236 ACTACCTCCGTCCGGAAATA 57.558 50.000 5.23 4.45 44.66 1.40
702 964 2.027385 ACTACCTCCGTCCGGAAATAC 58.973 52.381 5.23 0.00 44.66 1.89
703 965 2.305009 CTACCTCCGTCCGGAAATACT 58.695 52.381 5.23 0.00 44.66 2.12
704 966 2.442236 ACCTCCGTCCGGAAATACTA 57.558 50.000 5.23 0.00 44.66 1.82
705 967 2.954792 ACCTCCGTCCGGAAATACTAT 58.045 47.619 5.23 0.00 44.66 2.12
706 968 3.303049 ACCTCCGTCCGGAAATACTATT 58.697 45.455 5.23 0.00 44.66 1.73
707 969 3.320256 ACCTCCGTCCGGAAATACTATTC 59.680 47.826 5.23 0.00 44.66 1.75
708 970 3.319972 CCTCCGTCCGGAAATACTATTCA 59.680 47.826 5.23 0.00 44.66 2.57
709 971 4.021368 CCTCCGTCCGGAAATACTATTCAT 60.021 45.833 5.23 0.00 44.66 2.57
710 972 5.130292 TCCGTCCGGAAATACTATTCATC 57.870 43.478 5.23 0.00 42.05 2.92
711 973 4.585581 TCCGTCCGGAAATACTATTCATCA 59.414 41.667 5.23 0.00 42.05 3.07
712 974 5.069383 TCCGTCCGGAAATACTATTCATCAA 59.931 40.000 5.23 0.00 42.05 2.57
713 975 5.756347 CCGTCCGGAAATACTATTCATCAAA 59.244 40.000 5.23 0.00 37.50 2.69
714 976 6.259167 CCGTCCGGAAATACTATTCATCAAAA 59.741 38.462 5.23 0.00 37.50 2.44
715 977 7.041372 CCGTCCGGAAATACTATTCATCAAAAT 60.041 37.037 5.23 0.00 37.50 1.82
716 978 7.798516 CGTCCGGAAATACTATTCATCAAAATG 59.201 37.037 5.23 0.00 0.00 2.32
717 979 8.076178 GTCCGGAAATACTATTCATCAAAATGG 58.924 37.037 5.23 0.00 33.42 3.16
718 980 7.996066 TCCGGAAATACTATTCATCAAAATGGA 59.004 33.333 0.00 0.00 33.42 3.41
719 981 8.796475 CCGGAAATACTATTCATCAAAATGGAT 58.204 33.333 0.00 0.00 35.21 3.41
731 993 7.719483 TCATCAAAATGGATAAAAGGAGATGC 58.281 34.615 0.00 0.00 33.42 3.91
732 994 7.342541 TCATCAAAATGGATAAAAGGAGATGCA 59.657 33.333 0.00 0.00 33.42 3.96
733 995 7.664552 TCAAAATGGATAAAAGGAGATGCAT 57.335 32.000 0.00 0.00 35.84 3.96
734 996 8.765488 TCAAAATGGATAAAAGGAGATGCATA 57.235 30.769 0.00 0.00 33.50 3.14
735 997 9.370930 TCAAAATGGATAAAAGGAGATGCATAT 57.629 29.630 0.00 0.00 33.50 1.78
739 1001 9.678260 AATGGATAAAAGGAGATGCATATAGAC 57.322 33.333 0.00 0.00 33.50 2.59
740 1002 7.323420 TGGATAAAAGGAGATGCATATAGACG 58.677 38.462 0.00 0.00 0.00 4.18
741 1003 7.039011 TGGATAAAAGGAGATGCATATAGACGT 60.039 37.037 0.00 0.00 0.00 4.34
742 1004 8.467598 GGATAAAAGGAGATGCATATAGACGTA 58.532 37.037 0.00 0.00 0.00 3.57
746 1008 9.561069 AAAAGGAGATGCATATAGACGTATTTT 57.439 29.630 0.00 0.00 0.00 1.82
748 1010 9.862371 AAGGAGATGCATATAGACGTATTTTAG 57.138 33.333 0.00 0.00 0.00 1.85
749 1011 9.026121 AGGAGATGCATATAGACGTATTTTAGT 57.974 33.333 0.00 0.00 0.00 2.24
750 1012 9.640963 GGAGATGCATATAGACGTATTTTAGTT 57.359 33.333 0.00 0.00 0.00 2.24
787 1049 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
794 1056 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
795 1057 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
796 1058 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
797 1059 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
798 1060 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
799 1061 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
800 1062 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
801 1063 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
802 1064 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
803 1065 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
804 1066 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
805 1067 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
806 1068 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
807 1069 0.249398 ATTTTCGGACGGAGGGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
843 1118 6.751888 GCAATGTAATTCAAGTGGGTAATGAC 59.248 38.462 0.00 0.00 31.22 3.06
855 1131 6.902408 AGTGGGTAATGACGGGATAAAATAA 58.098 36.000 0.00 0.00 0.00 1.40
880 1156 3.760151 CAGAATCTTTGATTGGTCCTGCA 59.240 43.478 0.00 0.00 0.00 4.41
1032 1316 2.171003 GTCTTTGTGAATTGGAGGGGG 58.829 52.381 0.00 0.00 0.00 5.40
1127 1411 1.334869 GGCCGAGTCCTTATTTGCATG 59.665 52.381 0.00 0.00 0.00 4.06
1315 1600 0.991355 ATATGGGGGTTTCGGGCTCA 60.991 55.000 0.00 0.00 0.00 4.26
1476 1761 4.651585 GCATCACTTGCGCCAAAA 57.348 50.000 4.18 0.00 42.54 2.44
1478 1763 0.318955 GCATCACTTGCGCCAAAACT 60.319 50.000 4.18 0.00 42.54 2.66
1479 1764 1.068610 GCATCACTTGCGCCAAAACTA 60.069 47.619 4.18 0.00 42.54 2.24
1480 1765 2.415893 GCATCACTTGCGCCAAAACTAT 60.416 45.455 4.18 0.00 42.54 2.12
1481 1766 2.987413 TCACTTGCGCCAAAACTATG 57.013 45.000 4.18 0.00 0.00 2.23
1482 1767 1.068610 TCACTTGCGCCAAAACTATGC 60.069 47.619 4.18 0.00 0.00 3.14
1484 1769 1.068333 ACTTGCGCCAAAACTATGCAG 60.068 47.619 4.18 0.00 36.83 4.41
1592 3964 4.072131 ACAGAGACGGCAATAAAACATGT 58.928 39.130 0.00 0.00 0.00 3.21
1778 4356 4.541973 GGCCTCACCAAATTTGAATTCT 57.458 40.909 19.86 0.00 38.86 2.40
1779 4357 4.898320 GGCCTCACCAAATTTGAATTCTT 58.102 39.130 19.86 0.00 38.86 2.52
1780 4358 5.308014 GGCCTCACCAAATTTGAATTCTTT 58.692 37.500 19.86 0.00 38.86 2.52
1781 4359 5.764686 GGCCTCACCAAATTTGAATTCTTTT 59.235 36.000 19.86 1.87 38.86 2.27
1782 4360 6.262944 GGCCTCACCAAATTTGAATTCTTTTT 59.737 34.615 19.86 1.52 38.86 1.94
1837 4415 8.899427 TGCAATTCTGATGTAAATTTCCAAAA 57.101 26.923 0.00 0.00 0.00 2.44
1955 4533 9.847706 GTTTGAAAAGAAGAAGAGGAAATATCC 57.152 33.333 0.00 0.00 46.98 2.59
1984 4566 5.163301 ACCATTTAGCCTGGTATCTACTGTG 60.163 44.000 0.00 0.00 45.17 3.66
2161 4830 9.979270 GTCATGTTTTCATATAACTCAACTCAG 57.021 33.333 0.00 0.00 38.64 3.35
2220 4928 6.072397 TGACAATGAAACCCACTTATTAACGG 60.072 38.462 0.00 0.00 0.00 4.44
2342 5256 1.855295 TTGTGCAGGGATACGGACTA 58.145 50.000 0.00 0.00 37.60 2.59
2395 5309 1.360852 TCCACCCCCTTGCAATATTGT 59.639 47.619 16.61 0.00 0.00 2.71
2585 5499 6.884836 CCAGCTTCTTTAACTGGTATACCTTT 59.115 38.462 22.41 16.73 44.91 3.11
2806 5729 5.649782 ACTTCCTGGCTCAAAACATAATG 57.350 39.130 0.00 0.00 0.00 1.90
2885 5837 5.860611 TCCGAAACAGGAAGATTGAAGTTA 58.139 37.500 0.00 0.00 37.36 2.24
2934 5886 1.304713 GTACCGAGGTGGGGACAGA 60.305 63.158 4.80 0.00 44.46 3.41
2936 5888 0.928505 TACCGAGGTGGGGACAGATA 59.071 55.000 4.80 0.00 44.46 1.98
2962 5914 1.195674 GGCTCGCTCTCTCAAACAAAC 59.804 52.381 0.00 0.00 0.00 2.93
3295 6269 2.351244 ACGAGGCTCGGCAAGATCA 61.351 57.895 36.81 0.00 45.59 2.92
3613 6587 0.957395 CTTCAACAGTGAGGCGCCAT 60.957 55.000 31.54 14.28 34.49 4.40
3704 6679 1.915614 CTGGTGGATGCTGTGAACGC 61.916 60.000 0.00 0.00 0.00 4.84
3839 6814 0.981183 TACCTGTACTGGGCCAACAG 59.019 55.000 25.13 25.13 44.03 3.16
4305 9869 0.923358 TTTTCCCACCACCTCACTGT 59.077 50.000 0.00 0.00 0.00 3.55
4404 9974 3.976490 ATCCTGCTCGGGGTTCGGA 62.976 63.158 0.00 0.00 39.77 4.55
4405 9975 3.470888 CCTGCTCGGGGTTCGGAT 61.471 66.667 0.00 0.00 39.77 4.18
4426 9996 1.827399 ATTTGGAGCGAGACCACGGT 61.827 55.000 0.00 0.00 46.35 4.83
4443 10016 1.002624 GTGCCATCCAAACCCTCGA 60.003 57.895 0.00 0.00 0.00 4.04
4614 10187 3.144506 CACCAAGCTCAAACATCACTCT 58.855 45.455 0.00 0.00 0.00 3.24
4719 10292 2.124570 GCCATGTCGCCATCAGGT 60.125 61.111 0.00 0.00 37.19 4.00
4725 10298 3.470709 CATGTCGCCATCAGGTATTCTT 58.529 45.455 0.00 0.00 37.19 2.52
4818 10391 1.146263 CCTCTACACGAATGGGGCC 59.854 63.158 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.941058 TCCGTTATTGTTTGTCCATGTATGT 59.059 36.000 0.00 0.00 0.00 2.29
5 6 3.756434 CCTCCGTTATTGTTTGTCCATGT 59.244 43.478 0.00 0.00 0.00 3.21
7 8 4.019681 TCTCCTCCGTTATTGTTTGTCCAT 60.020 41.667 0.00 0.00 0.00 3.41
8 9 3.325425 TCTCCTCCGTTATTGTTTGTCCA 59.675 43.478 0.00 0.00 0.00 4.02
9 10 3.934068 TCTCCTCCGTTATTGTTTGTCC 58.066 45.455 0.00 0.00 0.00 4.02
10 11 4.142881 GCTTCTCCTCCGTTATTGTTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
11 12 3.751698 GCTTCTCCTCCGTTATTGTTTGT 59.248 43.478 0.00 0.00 0.00 2.83
12 13 4.003648 AGCTTCTCCTCCGTTATTGTTTG 58.996 43.478 0.00 0.00 0.00 2.93
13 14 4.254492 GAGCTTCTCCTCCGTTATTGTTT 58.746 43.478 0.00 0.00 0.00 2.83
14 15 3.676324 CGAGCTTCTCCTCCGTTATTGTT 60.676 47.826 0.00 0.00 0.00 2.83
15 16 2.159226 CGAGCTTCTCCTCCGTTATTGT 60.159 50.000 0.00 0.00 0.00 2.71
16 17 2.464865 CGAGCTTCTCCTCCGTTATTG 58.535 52.381 0.00 0.00 0.00 1.90
17 18 1.409427 CCGAGCTTCTCCTCCGTTATT 59.591 52.381 0.00 0.00 0.00 1.40
18 19 1.033574 CCGAGCTTCTCCTCCGTTAT 58.966 55.000 0.00 0.00 0.00 1.89
19 20 1.035932 CCCGAGCTTCTCCTCCGTTA 61.036 60.000 0.00 0.00 0.00 3.18
20 21 2.352032 CCCGAGCTTCTCCTCCGTT 61.352 63.158 0.00 0.00 0.00 4.44
21 22 2.207501 TACCCGAGCTTCTCCTCCGT 62.208 60.000 0.00 0.00 0.00 4.69
22 23 1.453379 TACCCGAGCTTCTCCTCCG 60.453 63.158 0.00 0.00 0.00 4.63
23 24 1.726533 CGTACCCGAGCTTCTCCTCC 61.727 65.000 0.00 0.00 35.63 4.30
24 25 0.747283 TCGTACCCGAGCTTCTCCTC 60.747 60.000 0.00 0.00 38.40 3.71
25 26 1.302285 TCGTACCCGAGCTTCTCCT 59.698 57.895 0.00 0.00 38.40 3.69
26 27 3.915575 TCGTACCCGAGCTTCTCC 58.084 61.111 0.00 0.00 38.40 3.71
41 42 4.246206 TATGTCGGCCGTCGCTCG 62.246 66.667 27.15 0.00 39.05 5.03
42 43 2.654404 GTATGTCGGCCGTCGCTC 60.654 66.667 27.15 10.66 39.05 5.03
43 44 2.782222 ATGTATGTCGGCCGTCGCT 61.782 57.895 27.15 13.50 39.05 4.93
44 45 2.279252 ATGTATGTCGGCCGTCGC 60.279 61.111 27.15 16.86 39.05 5.19
45 46 1.949133 CCATGTATGTCGGCCGTCG 60.949 63.158 27.15 5.35 40.90 5.12
46 47 0.874607 GTCCATGTATGTCGGCCGTC 60.875 60.000 27.15 21.30 0.00 4.79
47 48 1.143183 GTCCATGTATGTCGGCCGT 59.857 57.895 27.15 8.80 0.00 5.68
48 49 1.949133 CGTCCATGTATGTCGGCCG 60.949 63.158 22.12 22.12 0.00 6.13
49 50 1.594293 CCGTCCATGTATGTCGGCC 60.594 63.158 0.00 0.00 36.90 6.13
50 51 0.874607 GTCCGTCCATGTATGTCGGC 60.875 60.000 15.70 10.21 40.51 5.54
51 52 0.458260 TGTCCGTCCATGTATGTCGG 59.542 55.000 14.89 14.89 41.35 4.79
52 53 2.287393 TTGTCCGTCCATGTATGTCG 57.713 50.000 0.00 0.00 0.00 4.35
53 54 3.734231 CGTATTGTCCGTCCATGTATGTC 59.266 47.826 0.00 0.00 0.00 3.06
54 55 3.382227 TCGTATTGTCCGTCCATGTATGT 59.618 43.478 0.00 0.00 0.00 2.29
55 56 3.972403 TCGTATTGTCCGTCCATGTATG 58.028 45.455 0.00 0.00 0.00 2.39
56 57 3.005472 CCTCGTATTGTCCGTCCATGTAT 59.995 47.826 0.00 0.00 0.00 2.29
57 58 2.359848 CCTCGTATTGTCCGTCCATGTA 59.640 50.000 0.00 0.00 0.00 2.29
58 59 1.136305 CCTCGTATTGTCCGTCCATGT 59.864 52.381 0.00 0.00 0.00 3.21
59 60 1.407618 TCCTCGTATTGTCCGTCCATG 59.592 52.381 0.00 0.00 0.00 3.66
60 61 1.771565 TCCTCGTATTGTCCGTCCAT 58.228 50.000 0.00 0.00 0.00 3.41
61 62 1.679680 GATCCTCGTATTGTCCGTCCA 59.320 52.381 0.00 0.00 0.00 4.02
62 63 1.955080 AGATCCTCGTATTGTCCGTCC 59.045 52.381 0.00 0.00 0.00 4.79
63 64 3.270962 GAGATCCTCGTATTGTCCGTC 57.729 52.381 0.00 0.00 0.00 4.79
75 76 1.228003 TCCGAGCTCCGAGATCCTC 60.228 63.158 8.47 0.37 41.76 3.71
76 77 1.527380 GTCCGAGCTCCGAGATCCT 60.527 63.158 8.47 0.00 41.76 3.24
77 78 2.899044 CGTCCGAGCTCCGAGATCC 61.899 68.421 8.47 0.00 41.76 3.36
78 79 2.634777 CGTCCGAGCTCCGAGATC 59.365 66.667 8.47 3.42 41.76 2.75
79 80 2.902846 CCGTCCGAGCTCCGAGAT 60.903 66.667 8.47 0.00 41.76 2.75
84 85 4.500116 GTCAGCCGTCCGAGCTCC 62.500 72.222 8.47 0.00 38.95 4.70
85 86 4.500116 GGTCAGCCGTCCGAGCTC 62.500 72.222 2.73 2.73 38.95 4.09
88 89 2.507110 AATGTGGTCAGCCGTCCGAG 62.507 60.000 0.00 0.00 37.67 4.63
89 90 2.579657 AATGTGGTCAGCCGTCCGA 61.580 57.895 0.00 0.00 37.67 4.55
90 91 2.047274 AATGTGGTCAGCCGTCCG 60.047 61.111 0.00 0.00 37.67 4.79
91 92 2.040544 CCAATGTGGTCAGCCGTCC 61.041 63.158 0.00 0.00 37.67 4.79
92 93 1.003839 TCCAATGTGGTCAGCCGTC 60.004 57.895 0.00 0.00 39.03 4.79
93 94 1.302511 GTCCAATGTGGTCAGCCGT 60.303 57.895 0.00 0.00 39.03 5.68
94 95 0.888736 TTGTCCAATGTGGTCAGCCG 60.889 55.000 0.00 0.00 36.94 5.52
95 96 1.000274 GTTTGTCCAATGTGGTCAGCC 60.000 52.381 0.00 0.00 36.94 4.85
96 97 1.680735 TGTTTGTCCAATGTGGTCAGC 59.319 47.619 0.00 0.00 36.94 4.26
97 98 4.589216 ATTGTTTGTCCAATGTGGTCAG 57.411 40.909 0.00 0.00 36.94 3.51
98 99 5.506483 CGTTATTGTTTGTCCAATGTGGTCA 60.506 40.000 0.00 0.00 39.03 4.02
99 100 4.915085 CGTTATTGTTTGTCCAATGTGGTC 59.085 41.667 0.00 0.00 39.03 4.02
100 101 4.261825 CCGTTATTGTTTGTCCAATGTGGT 60.262 41.667 0.00 0.00 39.03 4.16
101 102 4.022762 TCCGTTATTGTTTGTCCAATGTGG 60.023 41.667 0.00 0.00 39.43 4.17
102 103 5.114785 TCCGTTATTGTTTGTCCAATGTG 57.885 39.130 0.00 0.00 35.85 3.21
103 104 4.217550 CCTCCGTTATTGTTTGTCCAATGT 59.782 41.667 0.00 0.00 35.85 2.71
104 105 4.457603 TCCTCCGTTATTGTTTGTCCAATG 59.542 41.667 0.00 0.00 35.85 2.82
105 106 4.658063 TCCTCCGTTATTGTTTGTCCAAT 58.342 39.130 0.00 0.00 38.54 3.16
106 107 4.069304 CTCCTCCGTTATTGTTTGTCCAA 58.931 43.478 0.00 0.00 0.00 3.53
107 108 3.325425 TCTCCTCCGTTATTGTTTGTCCA 59.675 43.478 0.00 0.00 0.00 4.02
108 109 3.934068 TCTCCTCCGTTATTGTTTGTCC 58.066 45.455 0.00 0.00 0.00 4.02
109 110 4.142881 GCTTCTCCTCCGTTATTGTTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
110 111 3.751698 GCTTCTCCTCCGTTATTGTTTGT 59.248 43.478 0.00 0.00 0.00 2.83
111 112 4.003648 AGCTTCTCCTCCGTTATTGTTTG 58.996 43.478 0.00 0.00 0.00 2.93
112 113 4.287766 AGCTTCTCCTCCGTTATTGTTT 57.712 40.909 0.00 0.00 0.00 2.83
113 114 3.983044 AGCTTCTCCTCCGTTATTGTT 57.017 42.857 0.00 0.00 0.00 2.83
114 115 3.600388 CAAGCTTCTCCTCCGTTATTGT 58.400 45.455 0.00 0.00 0.00 2.71
115 116 2.939103 CCAAGCTTCTCCTCCGTTATTG 59.061 50.000 0.00 0.00 0.00 1.90
116 117 2.838202 TCCAAGCTTCTCCTCCGTTATT 59.162 45.455 0.00 0.00 0.00 1.40
117 118 2.467880 TCCAAGCTTCTCCTCCGTTAT 58.532 47.619 0.00 0.00 0.00 1.89
118 119 1.933021 TCCAAGCTTCTCCTCCGTTA 58.067 50.000 0.00 0.00 0.00 3.18
119 120 1.280457 ATCCAAGCTTCTCCTCCGTT 58.720 50.000 0.00 0.00 0.00 4.44
120 121 1.757699 GTATCCAAGCTTCTCCTCCGT 59.242 52.381 0.00 0.00 0.00 4.69
121 122 1.269309 CGTATCCAAGCTTCTCCTCCG 60.269 57.143 0.00 0.00 0.00 4.63
122 123 2.032620 TCGTATCCAAGCTTCTCCTCC 58.967 52.381 0.00 0.00 0.00 4.30
123 124 2.544903 GCTCGTATCCAAGCTTCTCCTC 60.545 54.545 0.00 0.00 35.60 3.71
124 125 1.410882 GCTCGTATCCAAGCTTCTCCT 59.589 52.381 0.00 0.00 35.60 3.69
125 126 1.859383 GCTCGTATCCAAGCTTCTCC 58.141 55.000 0.00 0.00 35.60 3.71
126 127 1.065701 TCGCTCGTATCCAAGCTTCTC 59.934 52.381 0.00 0.00 36.35 2.87
127 128 1.103803 TCGCTCGTATCCAAGCTTCT 58.896 50.000 0.00 0.00 36.35 2.85
128 129 1.201343 GTCGCTCGTATCCAAGCTTC 58.799 55.000 0.00 0.00 36.35 3.86
129 130 0.525668 CGTCGCTCGTATCCAAGCTT 60.526 55.000 0.00 0.00 36.35 3.74
130 131 1.064296 CGTCGCTCGTATCCAAGCT 59.936 57.895 0.00 0.00 36.35 3.74
131 132 1.944676 CCGTCGCTCGTATCCAAGC 60.945 63.158 0.00 0.00 37.94 4.01
132 133 1.944676 GCCGTCGCTCGTATCCAAG 60.945 63.158 0.00 0.00 37.94 3.61
133 134 2.103538 GCCGTCGCTCGTATCCAA 59.896 61.111 0.00 0.00 37.94 3.53
134 135 4.246206 CGCCGTCGCTCGTATCCA 62.246 66.667 0.00 0.00 37.94 3.41
135 136 4.977126 CCGCCGTCGCTCGTATCC 62.977 72.222 4.82 0.00 37.94 2.59
136 137 2.728427 ATTCCGCCGTCGCTCGTATC 62.728 60.000 4.82 0.00 37.94 2.24
137 138 2.345880 AATTCCGCCGTCGCTCGTAT 62.346 55.000 4.82 0.00 37.94 3.06
138 139 3.055080 AATTCCGCCGTCGCTCGTA 62.055 57.895 4.82 0.00 37.94 3.43
139 140 4.430765 AATTCCGCCGTCGCTCGT 62.431 61.111 4.82 0.00 37.94 4.18
140 141 3.913573 CAATTCCGCCGTCGCTCG 61.914 66.667 0.00 0.00 39.52 5.03
141 142 1.429148 AATCAATTCCGCCGTCGCTC 61.429 55.000 0.00 0.00 0.00 5.03
142 143 1.429148 GAATCAATTCCGCCGTCGCT 61.429 55.000 0.00 0.00 0.00 4.93
143 144 1.011131 GAATCAATTCCGCCGTCGC 60.011 57.895 0.00 0.00 0.00 5.19
144 145 0.301687 CTGAATCAATTCCGCCGTCG 59.698 55.000 0.48 0.00 35.97 5.12
145 146 1.651987 TCTGAATCAATTCCGCCGTC 58.348 50.000 0.48 0.00 35.97 4.79
146 147 2.332063 ATCTGAATCAATTCCGCCGT 57.668 45.000 0.48 0.00 35.97 5.68
147 148 4.811555 TTAATCTGAATCAATTCCGCCG 57.188 40.909 0.48 0.00 35.97 6.46
148 149 6.974965 AGAATTAATCTGAATCAATTCCGCC 58.025 36.000 13.71 0.00 37.87 6.13
149 150 6.794158 CGAGAATTAATCTGAATCAATTCCGC 59.206 38.462 13.71 8.75 38.96 5.54
150 151 7.855545 ACGAGAATTAATCTGAATCAATTCCG 58.144 34.615 17.99 17.99 38.96 4.30
151 152 9.050601 AGACGAGAATTAATCTGAATCAATTCC 57.949 33.333 13.71 8.17 38.96 3.01
155 156 9.302345 GTGTAGACGAGAATTAATCTGAATCAA 57.698 33.333 0.00 0.00 38.96 2.57
156 157 8.858003 GTGTAGACGAGAATTAATCTGAATCA 57.142 34.615 0.00 0.00 38.96 2.57
174 175 1.135489 TCAGATTGACCGCGTGTAGAC 60.135 52.381 4.92 0.00 0.00 2.59
175 176 1.170442 TCAGATTGACCGCGTGTAGA 58.830 50.000 4.92 0.00 0.00 2.59
176 177 1.990799 TTCAGATTGACCGCGTGTAG 58.009 50.000 4.92 0.00 0.00 2.74
177 178 2.442212 TTTCAGATTGACCGCGTGTA 57.558 45.000 4.92 0.00 0.00 2.90
178 179 1.531149 CTTTTCAGATTGACCGCGTGT 59.469 47.619 4.92 1.93 0.00 4.49
179 180 1.135972 CCTTTTCAGATTGACCGCGTG 60.136 52.381 4.92 0.00 0.00 5.34
180 181 1.156736 CCTTTTCAGATTGACCGCGT 58.843 50.000 4.92 0.00 0.00 6.01
181 182 1.128692 GTCCTTTTCAGATTGACCGCG 59.871 52.381 0.00 0.00 0.00 6.46
182 183 2.427506 AGTCCTTTTCAGATTGACCGC 58.572 47.619 0.00 0.00 0.00 5.68
183 184 3.365364 GCAAGTCCTTTTCAGATTGACCG 60.365 47.826 0.00 0.00 0.00 4.79
184 185 3.365364 CGCAAGTCCTTTTCAGATTGACC 60.365 47.826 0.00 0.00 0.00 4.02
185 186 3.365364 CCGCAAGTCCTTTTCAGATTGAC 60.365 47.826 0.00 0.00 0.00 3.18
186 187 2.813754 CCGCAAGTCCTTTTCAGATTGA 59.186 45.455 0.00 0.00 0.00 2.57
187 188 2.095059 CCCGCAAGTCCTTTTCAGATTG 60.095 50.000 0.00 0.00 0.00 2.67
188 189 2.162681 CCCGCAAGTCCTTTTCAGATT 58.837 47.619 0.00 0.00 0.00 2.40
189 190 1.351017 TCCCGCAAGTCCTTTTCAGAT 59.649 47.619 0.00 0.00 0.00 2.90
190 191 0.762418 TCCCGCAAGTCCTTTTCAGA 59.238 50.000 0.00 0.00 0.00 3.27
191 192 1.537202 CTTCCCGCAAGTCCTTTTCAG 59.463 52.381 0.00 0.00 0.00 3.02
192 193 1.142060 TCTTCCCGCAAGTCCTTTTCA 59.858 47.619 0.00 0.00 33.27 2.69
193 194 1.535896 GTCTTCCCGCAAGTCCTTTTC 59.464 52.381 0.00 0.00 33.27 2.29
194 195 1.133915 TGTCTTCCCGCAAGTCCTTTT 60.134 47.619 0.00 0.00 33.27 2.27
195 196 0.472471 TGTCTTCCCGCAAGTCCTTT 59.528 50.000 0.00 0.00 33.27 3.11
196 197 0.250338 GTGTCTTCCCGCAAGTCCTT 60.250 55.000 0.00 0.00 33.27 3.36
197 198 1.371558 GTGTCTTCCCGCAAGTCCT 59.628 57.895 0.00 0.00 33.27 3.85
198 199 2.027625 CGTGTCTTCCCGCAAGTCC 61.028 63.158 0.00 0.00 33.27 3.85
199 200 3.550656 CGTGTCTTCCCGCAAGTC 58.449 61.111 0.00 0.00 33.27 3.01
205 206 3.499737 GCATGGCGTGTCTTCCCG 61.500 66.667 8.75 0.00 0.00 5.14
206 207 2.359850 TGCATGGCGTGTCTTCCC 60.360 61.111 8.75 0.00 0.00 3.97
207 208 3.044059 GCTGCATGGCGTGTCTTCC 62.044 63.158 8.75 0.00 0.00 3.46
208 209 2.037136 AGCTGCATGGCGTGTCTTC 61.037 57.895 8.75 0.00 37.29 2.87
209 210 2.033141 AGCTGCATGGCGTGTCTT 59.967 55.556 8.75 0.00 37.29 3.01
210 211 2.745100 CAGCTGCATGGCGTGTCT 60.745 61.111 8.75 0.80 37.29 3.41
211 212 4.471726 GCAGCTGCATGGCGTGTC 62.472 66.667 33.36 0.00 41.59 3.67
216 217 4.175489 CTCACGCAGCTGCATGGC 62.175 66.667 36.03 11.36 42.21 4.40
217 218 3.506096 CCTCACGCAGCTGCATGG 61.506 66.667 36.03 25.83 42.21 3.66
218 219 1.978712 CTTCCTCACGCAGCTGCATG 61.979 60.000 36.03 32.22 42.21 4.06
219 220 1.744368 CTTCCTCACGCAGCTGCAT 60.744 57.895 36.03 22.13 42.21 3.96
220 221 2.357881 CTTCCTCACGCAGCTGCA 60.358 61.111 36.03 17.83 42.21 4.41
221 222 2.047844 TCTTCCTCACGCAGCTGC 60.048 61.111 29.12 29.12 37.78 5.25
222 223 1.447489 CCTCTTCCTCACGCAGCTG 60.447 63.158 10.11 10.11 0.00 4.24
223 224 1.603236 CTCCTCTTCCTCACGCAGCT 61.603 60.000 0.00 0.00 0.00 4.24
224 225 1.153667 CTCCTCTTCCTCACGCAGC 60.154 63.158 0.00 0.00 0.00 5.25
225 226 1.515020 CCTCCTCTTCCTCACGCAG 59.485 63.158 0.00 0.00 0.00 5.18
226 227 2.650116 GCCTCCTCTTCCTCACGCA 61.650 63.158 0.00 0.00 0.00 5.24
227 228 2.185608 GCCTCCTCTTCCTCACGC 59.814 66.667 0.00 0.00 0.00 5.34
228 229 1.515020 CTGCCTCCTCTTCCTCACG 59.485 63.158 0.00 0.00 0.00 4.35
229 230 1.220477 GCTGCCTCCTCTTCCTCAC 59.780 63.158 0.00 0.00 0.00 3.51
230 231 2.354401 CGCTGCCTCCTCTTCCTCA 61.354 63.158 0.00 0.00 0.00 3.86
231 232 2.498726 CGCTGCCTCCTCTTCCTC 59.501 66.667 0.00 0.00 0.00 3.71
232 233 3.780173 GCGCTGCCTCCTCTTCCT 61.780 66.667 0.00 0.00 0.00 3.36
233 234 3.780173 AGCGCTGCCTCCTCTTCC 61.780 66.667 10.39 0.00 0.00 3.46
234 235 2.511145 CAGCGCTGCCTCCTCTTC 60.511 66.667 26.68 0.00 0.00 2.87
235 236 4.093291 CCAGCGCTGCCTCCTCTT 62.093 66.667 31.96 0.00 0.00 2.85
258 259 2.943690 CCTCATGAAGAGTTGCAGGATG 59.056 50.000 0.00 0.00 43.12 3.51
259 260 2.842496 TCCTCATGAAGAGTTGCAGGAT 59.158 45.455 0.00 0.00 43.12 3.24
260 261 2.259917 TCCTCATGAAGAGTTGCAGGA 58.740 47.619 0.00 0.00 43.12 3.86
261 262 2.746362 GTTCCTCATGAAGAGTTGCAGG 59.254 50.000 0.00 0.00 43.12 4.85
262 263 2.746362 GGTTCCTCATGAAGAGTTGCAG 59.254 50.000 0.00 0.00 43.12 4.41
263 264 2.373169 AGGTTCCTCATGAAGAGTTGCA 59.627 45.455 0.00 0.00 43.12 4.08
264 265 3.064900 AGGTTCCTCATGAAGAGTTGC 57.935 47.619 0.00 0.00 43.12 4.17
265 266 4.508662 GGTAGGTTCCTCATGAAGAGTTG 58.491 47.826 0.00 0.00 43.12 3.16
266 267 3.519913 GGGTAGGTTCCTCATGAAGAGTT 59.480 47.826 0.00 0.00 43.12 3.01
267 268 3.108376 GGGTAGGTTCCTCATGAAGAGT 58.892 50.000 0.00 0.00 43.12 3.24
268 269 2.436173 GGGGTAGGTTCCTCATGAAGAG 59.564 54.545 0.00 0.00 44.31 2.85
269 270 2.045885 AGGGGTAGGTTCCTCATGAAGA 59.954 50.000 0.00 0.00 32.37 2.87
270 271 2.436173 GAGGGGTAGGTTCCTCATGAAG 59.564 54.545 0.00 0.00 46.54 3.02
271 272 2.478292 GAGGGGTAGGTTCCTCATGAA 58.522 52.381 0.00 0.00 46.54 2.57
272 273 2.176247 GAGGGGTAGGTTCCTCATGA 57.824 55.000 0.00 0.00 46.54 3.07
276 277 0.042881 ACAGGAGGGGTAGGTTCCTC 59.957 60.000 0.00 0.00 46.57 3.71
277 278 0.252742 CACAGGAGGGGTAGGTTCCT 60.253 60.000 0.00 0.00 41.97 3.36
278 279 0.252558 TCACAGGAGGGGTAGGTTCC 60.253 60.000 0.00 0.00 0.00 3.62
279 280 1.486726 CATCACAGGAGGGGTAGGTTC 59.513 57.143 0.00 0.00 0.00 3.62
280 281 1.584724 CATCACAGGAGGGGTAGGTT 58.415 55.000 0.00 0.00 0.00 3.50
281 282 0.983378 GCATCACAGGAGGGGTAGGT 60.983 60.000 0.00 0.00 0.00 3.08
282 283 0.982852 TGCATCACAGGAGGGGTAGG 60.983 60.000 0.00 0.00 0.00 3.18
283 284 1.135094 ATGCATCACAGGAGGGGTAG 58.865 55.000 0.00 0.00 0.00 3.18
284 285 1.595311 AATGCATCACAGGAGGGGTA 58.405 50.000 0.00 0.00 0.00 3.69
285 286 0.706433 AAATGCATCACAGGAGGGGT 59.294 50.000 0.00 0.00 0.00 4.95
286 287 1.108776 CAAATGCATCACAGGAGGGG 58.891 55.000 0.00 0.00 0.00 4.79
287 288 0.458669 GCAAATGCATCACAGGAGGG 59.541 55.000 0.00 0.00 41.59 4.30
299 300 4.691860 ATGAAGAGTACAGTGCAAATGC 57.308 40.909 0.00 0.00 33.50 3.56
300 301 5.344128 GCAAATGAAGAGTACAGTGCAAATG 59.656 40.000 0.00 0.00 38.30 2.32
301 302 5.009911 TGCAAATGAAGAGTACAGTGCAAAT 59.990 36.000 0.00 0.00 38.41 2.32
302 303 4.337836 TGCAAATGAAGAGTACAGTGCAAA 59.662 37.500 0.00 0.00 38.41 3.68
303 304 3.882288 TGCAAATGAAGAGTACAGTGCAA 59.118 39.130 0.00 0.00 38.41 4.08
304 305 3.250762 GTGCAAATGAAGAGTACAGTGCA 59.749 43.478 0.00 0.00 38.75 4.57
305 306 3.499918 AGTGCAAATGAAGAGTACAGTGC 59.500 43.478 0.00 0.00 34.78 4.40
306 307 4.512944 ACAGTGCAAATGAAGAGTACAGTG 59.487 41.667 7.15 0.00 34.17 3.66
307 308 4.708177 ACAGTGCAAATGAAGAGTACAGT 58.292 39.130 7.15 0.00 34.17 3.55
308 309 5.928839 AGTACAGTGCAAATGAAGAGTACAG 59.071 40.000 7.15 0.00 34.17 2.74
309 310 5.853936 AGTACAGTGCAAATGAAGAGTACA 58.146 37.500 7.15 0.00 34.17 2.90
310 311 6.310711 GGTAGTACAGTGCAAATGAAGAGTAC 59.689 42.308 7.15 8.29 34.17 2.73
311 312 6.395629 GGTAGTACAGTGCAAATGAAGAGTA 58.604 40.000 7.15 0.00 34.17 2.59
312 313 5.238583 GGTAGTACAGTGCAAATGAAGAGT 58.761 41.667 7.15 0.00 34.17 3.24
313 314 4.631813 GGGTAGTACAGTGCAAATGAAGAG 59.368 45.833 7.15 0.00 34.17 2.85
314 315 4.564821 GGGGTAGTACAGTGCAAATGAAGA 60.565 45.833 7.15 0.00 34.17 2.87
315 316 3.689649 GGGGTAGTACAGTGCAAATGAAG 59.310 47.826 7.15 0.00 34.17 3.02
316 317 3.560453 GGGGGTAGTACAGTGCAAATGAA 60.560 47.826 7.15 0.00 34.17 2.57
317 318 2.026636 GGGGGTAGTACAGTGCAAATGA 60.027 50.000 7.15 0.00 34.17 2.57
318 319 2.365582 GGGGGTAGTACAGTGCAAATG 58.634 52.381 2.06 0.00 38.30 2.32
319 320 2.801077 GGGGGTAGTACAGTGCAAAT 57.199 50.000 2.06 0.00 0.00 2.32
336 337 4.687901 ATTTCAAACTCAAAACAGGGGG 57.312 40.909 0.00 0.00 0.00 5.40
337 338 7.363793 CCCTATATTTCAAACTCAAAACAGGGG 60.364 40.741 0.00 0.00 32.65 4.79
338 339 7.396055 TCCCTATATTTCAAACTCAAAACAGGG 59.604 37.037 0.00 0.00 35.06 4.45
339 340 8.348285 TCCCTATATTTCAAACTCAAAACAGG 57.652 34.615 0.00 0.00 0.00 4.00
366 367 9.958234 ACAAAACAAACAAAAGTGCTTAATTTT 57.042 22.222 0.00 0.00 0.00 1.82
367 368 9.958234 AACAAAACAAACAAAAGTGCTTAATTT 57.042 22.222 0.00 0.00 0.00 1.82
368 369 9.958234 AAACAAAACAAACAAAAGTGCTTAATT 57.042 22.222 0.00 0.00 0.00 1.40
369 370 9.392021 CAAACAAAACAAACAAAAGTGCTTAAT 57.608 25.926 0.00 0.00 0.00 1.40
370 371 8.398665 ACAAACAAAACAAACAAAAGTGCTTAA 58.601 25.926 0.00 0.00 0.00 1.85
371 372 7.920738 ACAAACAAAACAAACAAAAGTGCTTA 58.079 26.923 0.00 0.00 0.00 3.09
372 373 6.790282 ACAAACAAAACAAACAAAAGTGCTT 58.210 28.000 0.00 0.00 0.00 3.91
373 374 6.037610 TGACAAACAAAACAAACAAAAGTGCT 59.962 30.769 0.00 0.00 0.00 4.40
377 378 8.779603 ACAATGACAAACAAAACAAACAAAAG 57.220 26.923 0.00 0.00 0.00 2.27
453 454 8.922676 GGGACAAACATGATAACTACGTATATG 58.077 37.037 0.00 0.00 0.00 1.78
491 493 5.005740 CCTTGACTGATTCATGAAGTGGAA 58.994 41.667 14.54 1.54 32.84 3.53
492 494 4.042062 ACCTTGACTGATTCATGAAGTGGA 59.958 41.667 14.54 0.00 32.84 4.02
595 802 6.579666 ACATTTTGCTATCAATGTGTCACT 57.420 33.333 4.27 0.00 41.18 3.41
639 855 5.304614 GGTACATGTGAGTATGTGACCCTAT 59.695 44.000 9.11 0.00 41.18 2.57
641 857 3.451178 GGTACATGTGAGTATGTGACCCT 59.549 47.826 9.11 0.00 41.18 4.34
642 858 3.451178 AGGTACATGTGAGTATGTGACCC 59.549 47.826 9.11 0.00 41.18 4.46
643 859 4.737855 AGGTACATGTGAGTATGTGACC 57.262 45.455 9.11 4.48 41.18 4.02
644 860 7.817962 AGTAAAAGGTACATGTGAGTATGTGAC 59.182 37.037 9.11 0.00 41.18 3.67
645 861 7.903145 AGTAAAAGGTACATGTGAGTATGTGA 58.097 34.615 9.11 0.00 41.18 3.58
646 862 8.443160 CAAGTAAAAGGTACATGTGAGTATGTG 58.557 37.037 9.11 0.00 41.18 3.21
647 863 7.606456 CCAAGTAAAAGGTACATGTGAGTATGT 59.394 37.037 9.11 0.00 43.34 2.29
648 864 7.606456 ACCAAGTAAAAGGTACATGTGAGTATG 59.394 37.037 9.11 0.00 36.07 2.39
649 865 7.686434 ACCAAGTAAAAGGTACATGTGAGTAT 58.314 34.615 9.11 0.00 36.07 2.12
652 868 7.383687 TCTACCAAGTAAAAGGTACATGTGAG 58.616 38.462 9.11 0.00 39.31 3.51
683 945 2.305009 AGTATTTCCGGACGGAGGTAG 58.695 52.381 13.64 0.00 46.06 3.18
684 946 2.442236 AGTATTTCCGGACGGAGGTA 57.558 50.000 13.64 8.09 46.06 3.08
685 947 2.442236 TAGTATTTCCGGACGGAGGT 57.558 50.000 13.64 9.03 46.06 3.85
686 948 3.319972 TGAATAGTATTTCCGGACGGAGG 59.680 47.826 13.64 0.00 46.06 4.30
687 949 4.579454 TGAATAGTATTTCCGGACGGAG 57.421 45.455 13.64 0.00 46.06 4.63
688 950 4.585581 TGATGAATAGTATTTCCGGACGGA 59.414 41.667 1.83 9.76 43.52 4.69
689 951 4.878439 TGATGAATAGTATTTCCGGACGG 58.122 43.478 1.83 3.96 0.00 4.79
690 952 6.838198 TTTGATGAATAGTATTTCCGGACG 57.162 37.500 1.83 0.00 0.00 4.79
691 953 8.076178 CCATTTTGATGAATAGTATTTCCGGAC 58.924 37.037 1.83 0.00 0.00 4.79
692 954 7.996066 TCCATTTTGATGAATAGTATTTCCGGA 59.004 33.333 0.00 0.00 0.00 5.14
693 955 8.165239 TCCATTTTGATGAATAGTATTTCCGG 57.835 34.615 0.00 0.00 0.00 5.14
705 967 8.199449 GCATCTCCTTTTATCCATTTTGATGAA 58.801 33.333 0.00 0.00 32.05 2.57
706 968 7.342541 TGCATCTCCTTTTATCCATTTTGATGA 59.657 33.333 0.00 0.00 32.05 2.92
707 969 7.494211 TGCATCTCCTTTTATCCATTTTGATG 58.506 34.615 0.00 0.00 0.00 3.07
708 970 7.664552 TGCATCTCCTTTTATCCATTTTGAT 57.335 32.000 0.00 0.00 0.00 2.57
709 971 7.664552 ATGCATCTCCTTTTATCCATTTTGA 57.335 32.000 0.00 0.00 0.00 2.69
713 975 9.678260 GTCTATATGCATCTCCTTTTATCCATT 57.322 33.333 0.19 0.00 0.00 3.16
714 976 7.984050 CGTCTATATGCATCTCCTTTTATCCAT 59.016 37.037 0.19 0.00 0.00 3.41
715 977 7.039011 ACGTCTATATGCATCTCCTTTTATCCA 60.039 37.037 0.19 0.00 0.00 3.41
716 978 7.324178 ACGTCTATATGCATCTCCTTTTATCC 58.676 38.462 0.19 0.00 0.00 2.59
720 982 9.561069 AAAATACGTCTATATGCATCTCCTTTT 57.439 29.630 0.19 0.00 0.00 2.27
722 984 9.862371 CTAAAATACGTCTATATGCATCTCCTT 57.138 33.333 0.19 0.00 0.00 3.36
723 985 9.026121 ACTAAAATACGTCTATATGCATCTCCT 57.974 33.333 0.19 0.00 0.00 3.69
724 986 9.640963 AACTAAAATACGTCTATATGCATCTCC 57.359 33.333 0.19 0.00 0.00 3.71
761 1023 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
769 1031 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
770 1032 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
771 1033 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
772 1034 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
773 1035 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
774 1036 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
775 1037 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
776 1038 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
777 1039 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
778 1040 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
779 1041 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
780 1042 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
781 1043 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
782 1044 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
783 1045 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
784 1046 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
785 1047 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
786 1048 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
787 1049 1.479323 CACTCCCTCCGTCCGAAAATA 59.521 52.381 0.00 0.00 0.00 1.40
788 1050 0.249398 CACTCCCTCCGTCCGAAAAT 59.751 55.000 0.00 0.00 0.00 1.82
789 1051 1.669440 CACTCCCTCCGTCCGAAAA 59.331 57.895 0.00 0.00 0.00 2.29
790 1052 2.280552 CCACTCCCTCCGTCCGAAA 61.281 63.158 0.00 0.00 0.00 3.46
791 1053 2.678934 CCACTCCCTCCGTCCGAA 60.679 66.667 0.00 0.00 0.00 4.30
794 1056 3.316573 CTTGCCACTCCCTCCGTCC 62.317 68.421 0.00 0.00 0.00 4.79
795 1057 1.255667 TACTTGCCACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
796 1058 1.229082 TACTTGCCACTCCCTCCGT 60.229 57.895 0.00 0.00 0.00 4.69
797 1059 0.970937 TCTACTTGCCACTCCCTCCG 60.971 60.000 0.00 0.00 0.00 4.63
798 1060 1.208293 CTTCTACTTGCCACTCCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
799 1061 1.406205 GCTTCTACTTGCCACTCCCTC 60.406 57.143 0.00 0.00 0.00 4.30
800 1062 0.615850 GCTTCTACTTGCCACTCCCT 59.384 55.000 0.00 0.00 0.00 4.20
801 1063 0.324943 TGCTTCTACTTGCCACTCCC 59.675 55.000 0.00 0.00 0.00 4.30
802 1064 2.185004 TTGCTTCTACTTGCCACTCC 57.815 50.000 0.00 0.00 0.00 3.85
803 1065 3.077359 ACATTGCTTCTACTTGCCACTC 58.923 45.455 0.00 0.00 0.00 3.51
804 1066 3.146104 ACATTGCTTCTACTTGCCACT 57.854 42.857 0.00 0.00 0.00 4.00
805 1067 5.567138 ATTACATTGCTTCTACTTGCCAC 57.433 39.130 0.00 0.00 0.00 5.01
806 1068 5.709631 TGAATTACATTGCTTCTACTTGCCA 59.290 36.000 0.00 0.00 0.00 4.92
807 1069 6.194796 TGAATTACATTGCTTCTACTTGCC 57.805 37.500 0.00 0.00 0.00 4.52
843 1118 6.884280 AAGATTCTGGCTTATTTTATCCCG 57.116 37.500 0.00 0.00 0.00 5.14
855 1131 3.011032 AGGACCAATCAAAGATTCTGGCT 59.989 43.478 0.00 0.00 0.00 4.75
956 1240 1.336332 ACTCACTACTGCTTGTCTGCG 60.336 52.381 0.00 0.00 35.36 5.18
1032 1316 4.051237 GCACCTCTTTGTTGATGGTTTTC 58.949 43.478 0.00 0.00 0.00 2.29
1315 1600 5.413309 AGAAATTAGCAGCTGTAGTCACT 57.587 39.130 16.64 5.01 0.00 3.41
1462 1747 1.068610 GCATAGTTTTGGCGCAAGTGA 60.069 47.619 10.83 0.00 41.68 3.41
1464 1749 0.958091 TGCATAGTTTTGGCGCAAGT 59.042 45.000 10.83 0.00 41.68 3.16
1465 1750 1.621107 CTGCATAGTTTTGGCGCAAG 58.379 50.000 10.83 0.00 43.44 4.01
1467 1752 1.212490 GCTGCATAGTTTTGGCGCA 59.788 52.632 10.83 0.00 0.00 6.09
1468 1753 0.109132 AAGCTGCATAGTTTTGGCGC 60.109 50.000 0.00 0.00 0.00 6.53
1469 1754 1.199789 TGAAGCTGCATAGTTTTGGCG 59.800 47.619 1.02 0.00 0.00 5.69
1470 1755 3.129988 AGATGAAGCTGCATAGTTTTGGC 59.870 43.478 7.34 0.00 0.00 4.52
1471 1756 4.157289 ACAGATGAAGCTGCATAGTTTTGG 59.843 41.667 7.34 0.00 39.51 3.28
1472 1757 5.306532 ACAGATGAAGCTGCATAGTTTTG 57.693 39.130 7.34 4.33 39.51 2.44
1473 1758 5.474532 TGAACAGATGAAGCTGCATAGTTTT 59.525 36.000 20.38 6.94 39.51 2.43
1475 1760 4.582869 TGAACAGATGAAGCTGCATAGTT 58.417 39.130 19.80 19.80 39.51 2.24
1476 1761 4.190001 CTGAACAGATGAAGCTGCATAGT 58.810 43.478 7.34 6.81 39.51 2.12
1478 1763 4.212143 ACTGAACAGATGAAGCTGCATA 57.788 40.909 7.34 0.00 39.51 3.14
1479 1764 3.069079 ACTGAACAGATGAAGCTGCAT 57.931 42.857 6.99 6.99 39.51 3.96
1480 1765 2.556144 ACTGAACAGATGAAGCTGCA 57.444 45.000 0.00 0.00 39.51 4.41
1481 1766 4.874966 AGATAACTGAACAGATGAAGCTGC 59.125 41.667 8.87 0.00 39.51 5.25
1482 1767 7.038048 TGTAGATAACTGAACAGATGAAGCTG 58.962 38.462 8.87 0.00 41.63 4.24
1484 1769 7.708322 TCATGTAGATAACTGAACAGATGAAGC 59.292 37.037 8.87 0.00 0.00 3.86
1779 4357 5.256474 TCAAATTTGGTGCCCTTTCAAAAA 58.744 33.333 17.90 0.00 34.63 1.94
1780 4358 4.848357 TCAAATTTGGTGCCCTTTCAAAA 58.152 34.783 17.90 0.00 34.63 2.44
1781 4359 4.494091 TCAAATTTGGTGCCCTTTCAAA 57.506 36.364 17.90 0.00 35.30 2.69
1782 4360 4.080638 ACTTCAAATTTGGTGCCCTTTCAA 60.081 37.500 17.90 0.51 0.00 2.69
1783 4361 3.454082 ACTTCAAATTTGGTGCCCTTTCA 59.546 39.130 17.90 0.00 0.00 2.69
1784 4362 3.809279 CACTTCAAATTTGGTGCCCTTTC 59.191 43.478 17.90 0.00 0.00 2.62
1785 4363 3.199727 ACACTTCAAATTTGGTGCCCTTT 59.800 39.130 20.75 5.20 33.53 3.11
1786 4364 2.771372 ACACTTCAAATTTGGTGCCCTT 59.229 40.909 20.75 5.48 33.53 3.95
1787 4365 2.397597 ACACTTCAAATTTGGTGCCCT 58.602 42.857 20.75 5.75 33.53 5.19
1788 4366 2.871633 CAACACTTCAAATTTGGTGCCC 59.128 45.455 20.75 0.00 33.53 5.36
1789 4367 3.530535 ACAACACTTCAAATTTGGTGCC 58.469 40.909 20.75 0.00 30.59 5.01
1790 4368 4.268405 CAGACAACACTTCAAATTTGGTGC 59.732 41.667 20.75 9.65 30.59 5.01
1791 4369 4.268405 GCAGACAACACTTCAAATTTGGTG 59.732 41.667 17.90 19.00 33.93 4.17
1792 4370 4.081752 TGCAGACAACACTTCAAATTTGGT 60.082 37.500 17.90 6.32 0.00 3.67
1793 4371 4.431809 TGCAGACAACACTTCAAATTTGG 58.568 39.130 17.90 5.67 0.00 3.28
1794 4372 6.592798 ATTGCAGACAACACTTCAAATTTG 57.407 33.333 12.15 12.15 38.99 2.32
1795 4373 7.010738 CAGAATTGCAGACAACACTTCAAATTT 59.989 33.333 0.00 0.00 38.99 1.82
1796 4374 6.477688 CAGAATTGCAGACAACACTTCAAATT 59.522 34.615 0.00 0.00 38.99 1.82
1797 4375 5.981315 CAGAATTGCAGACAACACTTCAAAT 59.019 36.000 0.00 0.00 38.99 2.32
1798 4376 5.125257 TCAGAATTGCAGACAACACTTCAAA 59.875 36.000 0.00 0.00 38.99 2.69
1799 4377 4.639755 TCAGAATTGCAGACAACACTTCAA 59.360 37.500 0.00 0.00 38.99 2.69
1800 4378 4.198530 TCAGAATTGCAGACAACACTTCA 58.801 39.130 0.00 0.00 38.99 3.02
1837 4415 5.427378 CCAAGTTCCCAAACAAATTTCAGT 58.573 37.500 0.00 0.00 37.88 3.41
1952 4530 2.091665 CCAGGCTAAATGGTTGGAGGAT 60.092 50.000 0.00 0.00 32.85 3.24
1984 4566 6.494893 TGTTGCTTATGGTTTGTGTCTATC 57.505 37.500 0.00 0.00 0.00 2.08
2157 4826 4.371855 TGTACTGTATCTTTCGCCTGAG 57.628 45.455 0.00 0.00 0.00 3.35
2161 4830 6.018994 CCAAAGTATGTACTGTATCTTTCGCC 60.019 42.308 0.00 0.00 36.50 5.54
2300 5214 7.042992 ACAAATTAATGCATGCTCGATCAATTG 60.043 33.333 20.33 15.42 0.00 2.32
2342 5256 1.374758 GTAGGCTTGCAGTGCGAGT 60.375 57.895 28.99 15.76 41.74 4.18
2395 5309 2.237643 TGCAATTGTTTGGCTCTGCTA 58.762 42.857 7.40 0.00 33.22 3.49
2585 5499 4.072131 CGAAACCTCCAAAAGAGATTCCA 58.928 43.478 0.00 0.00 46.50 3.53
2806 5729 4.036262 TGAAGTCAACACAAGCAACATACC 59.964 41.667 0.00 0.00 0.00 2.73
2885 5837 2.495669 GTGCTTCTTCTAGCTCCTCACT 59.504 50.000 0.00 0.00 41.76 3.41
2934 5886 2.432146 TGAGAGAGCGAGCCATTGTTAT 59.568 45.455 0.00 0.00 0.00 1.89
2936 5888 0.610174 TGAGAGAGCGAGCCATTGTT 59.390 50.000 0.00 0.00 0.00 2.83
3021 5982 2.226912 GGTACGCTACTCTCTATGGCAG 59.773 54.545 0.00 0.00 0.00 4.85
3295 6269 4.238654 TGTCGCCGGGGAAACGTT 62.239 61.111 24.36 0.00 0.00 3.99
3613 6587 1.143838 CGATCGACTTCATGCCCCA 59.856 57.895 10.26 0.00 0.00 4.96
3704 6679 3.499737 GACCATGCCTTGTCGCCG 61.500 66.667 0.00 0.00 0.00 6.46
4119 9226 2.666317 ACAATTTATAGCTGCCCACCC 58.334 47.619 0.00 0.00 0.00 4.61
4132 9239 5.407084 CACACACTGGTCATCGTACAATTTA 59.593 40.000 0.00 0.00 0.00 1.40
4305 9869 0.106708 GGGTATGAGATCAGCGGCAA 59.893 55.000 1.45 0.00 0.00 4.52
4404 9974 1.740380 CGTGGTCTCGCTCCAAATCAT 60.740 52.381 0.00 0.00 36.68 2.45
4405 9975 0.389817 CGTGGTCTCGCTCCAAATCA 60.390 55.000 0.00 0.00 36.68 2.57
4426 9996 1.002624 GTCGAGGGTTTGGATGGCA 60.003 57.895 0.00 0.00 0.00 4.92
4430 10003 1.079127 CTGCGTCGAGGGTTTGGAT 60.079 57.895 7.31 0.00 0.00 3.41
4466 10039 3.114558 GATGATCTCCGTCATCGCC 57.885 57.895 1.60 0.00 43.43 5.54
4725 10298 3.224324 GAGGAGCCCGCCATCGTA 61.224 66.667 0.00 0.00 0.00 3.43
4836 10411 3.499737 CCATGGTTGACGAGCCGC 61.500 66.667 2.57 0.00 0.00 6.53
4837 10412 3.499737 GCCATGGTTGACGAGCCG 61.500 66.667 14.67 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.