Multiple sequence alignment - TraesCS5B01G060600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G060600 chr5B 100.000 2609 0 0 1 2609 68049891 68047283 0.000000e+00 4819
1 TraesCS5B01G060600 chr5B 87.195 1679 127 30 2 1658 68195744 68194132 0.000000e+00 1829
2 TraesCS5B01G060600 chr5B 90.120 334 31 1 1217 1548 68052423 68052756 1.430000e-117 433
3 TraesCS5B01G060600 chr5B 81.056 549 65 21 1544 2057 68167497 68168041 4.040000e-108 401
4 TraesCS5B01G060600 chr5B 79.675 492 75 19 2130 2609 711938674 711939152 5.380000e-87 331
5 TraesCS5B01G060600 chr5B 80.645 434 54 17 1652 2057 68193515 68193084 2.520000e-80 309
6 TraesCS5B01G060600 chr5B 85.217 115 10 5 2060 2167 533766255 533766369 7.630000e-21 111
7 TraesCS5B01G060600 chr5D 88.939 895 69 16 908 1790 62479042 62479918 0.000000e+00 1077
8 TraesCS5B01G060600 chr5D 89.667 842 36 14 8 846 62509985 62510778 0.000000e+00 1026
9 TraesCS5B01G060600 chr5D 93.796 677 33 4 1 677 62478208 62478875 0.000000e+00 1009
10 TraesCS5B01G060600 chr5D 88.636 748 63 10 910 1654 62510804 62511532 0.000000e+00 891
11 TraesCS5B01G060600 chr5D 89.970 329 33 0 1220 1548 62475555 62475227 2.400000e-115 425
12 TraesCS5B01G060600 chr5D 81.262 539 65 20 1544 2056 62326861 62326333 1.120000e-108 403
13 TraesCS5B01G060600 chr5A 94.072 641 32 1 8 648 52356651 52357285 0.000000e+00 968
14 TraesCS5B01G060600 chr5A 85.936 903 76 25 761 1633 52357330 52358211 0.000000e+00 917
15 TraesCS5B01G060600 chr3B 80.992 484 66 17 2130 2607 533446004 533446467 6.860000e-96 361
16 TraesCS5B01G060600 chr7A 80.167 479 74 15 2141 2609 88120649 88120182 3.220000e-89 339
17 TraesCS5B01G060600 chr2D 80.000 485 76 15 2134 2609 59717083 59717555 3.220000e-89 339
18 TraesCS5B01G060600 chr2D 79.550 489 80 16 2130 2609 528619684 528619207 5.380000e-87 331
19 TraesCS5B01G060600 chr7B 80.430 465 67 18 2157 2609 598181349 598181801 1.500000e-87 333
20 TraesCS5B01G060600 chr7B 80.000 470 79 14 2147 2609 630818395 630817934 1.500000e-87 333
21 TraesCS5B01G060600 chr7B 84.677 124 11 3 2059 2174 654170717 654170594 1.640000e-22 117
22 TraesCS5B01G060600 chr7B 84.298 121 14 4 2059 2174 84260374 84260494 2.120000e-21 113
23 TraesCS5B01G060600 chr7B 84.483 116 10 6 2059 2167 707561116 707561230 9.870000e-20 108
24 TraesCS5B01G060600 chr4A 80.172 464 72 17 2157 2609 605061532 605061078 1.940000e-86 329
25 TraesCS5B01G060600 chr4A 85.156 128 13 2 2059 2180 595225326 595225453 2.730000e-25 126
26 TraesCS5B01G060600 chr7D 79.913 458 74 15 2130 2582 524308354 524308798 1.160000e-83 320
27 TraesCS5B01G060600 chr1A 80.872 413 63 14 2130 2534 1500598 1501002 7.010000e-81 311
28 TraesCS5B01G060600 chr2A 85.484 124 10 4 2059 2174 729542691 729542814 3.530000e-24 122
29 TraesCS5B01G060600 chr1D 84.615 117 15 3 2061 2174 398090143 398090027 2.120000e-21 113
30 TraesCS5B01G060600 chr1B 86.364 110 8 3 2059 2167 635913051 635912948 2.120000e-21 113
31 TraesCS5B01G060600 chr2B 83.607 122 13 4 2060 2174 107120356 107120477 9.870000e-20 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G060600 chr5B 68047283 68049891 2608 True 4819.0 4819 100.0000 1 2609 1 chr5B.!!$R1 2608
1 TraesCS5B01G060600 chr5B 68193084 68195744 2660 True 1069.0 1829 83.9200 2 2057 2 chr5B.!!$R2 2055
2 TraesCS5B01G060600 chr5B 68167497 68168041 544 False 401.0 401 81.0560 1544 2057 1 chr5B.!!$F2 513
3 TraesCS5B01G060600 chr5D 62478208 62479918 1710 False 1043.0 1077 91.3675 1 1790 2 chr5D.!!$F1 1789
4 TraesCS5B01G060600 chr5D 62509985 62511532 1547 False 958.5 1026 89.1515 8 1654 2 chr5D.!!$F2 1646
5 TraesCS5B01G060600 chr5D 62326333 62326861 528 True 403.0 403 81.2620 1544 2056 1 chr5D.!!$R1 512
6 TraesCS5B01G060600 chr5A 52356651 52358211 1560 False 942.5 968 90.0040 8 1633 2 chr5A.!!$F1 1625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 916 0.460284 GTGTATCTGTCTGGCACCCG 60.46 60.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2978 0.0293 TCACAGAAGCAAAAGCGTGC 59.971 50.0 2.26 2.26 45.28 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
293 294 0.531200 CGGAGTAGACCACTTCCACC 59.469 60.000 0.00 0.00 37.72 4.61
464 465 2.584835 TGATCCTCCCAACAAACTGG 57.415 50.000 0.00 0.00 36.10 4.00
527 528 0.955919 CGAGGAAGGTGAACAAGGCC 60.956 60.000 0.00 0.00 0.00 5.19
569 570 3.917760 CCATCGGAGTCGCCCCTC 61.918 72.222 0.00 0.00 36.13 4.30
570 571 4.271816 CATCGGAGTCGCCCCTCG 62.272 72.222 0.00 0.00 40.15 4.63
571 572 4.501285 ATCGGAGTCGCCCCTCGA 62.501 66.667 0.00 0.00 46.29 4.04
674 682 3.717350 AAAAAGATGTACGCGTGTAGC 57.283 42.857 24.59 13.46 43.95 3.58
675 683 2.649331 AAAGATGTACGCGTGTAGCT 57.351 45.000 24.59 15.71 45.59 3.32
676 684 2.649331 AAGATGTACGCGTGTAGCTT 57.351 45.000 24.59 20.68 45.59 3.74
677 685 2.649331 AGATGTACGCGTGTAGCTTT 57.351 45.000 24.59 0.00 45.59 3.51
678 686 2.955614 AGATGTACGCGTGTAGCTTTT 58.044 42.857 24.59 0.00 45.59 2.27
679 687 3.323243 AGATGTACGCGTGTAGCTTTTT 58.677 40.909 24.59 0.00 45.59 1.94
680 688 2.934107 TGTACGCGTGTAGCTTTTTG 57.066 45.000 24.59 0.00 45.59 2.44
681 689 1.527736 TGTACGCGTGTAGCTTTTTGG 59.472 47.619 24.59 0.00 45.59 3.28
682 690 1.794116 GTACGCGTGTAGCTTTTTGGA 59.206 47.619 24.59 0.00 45.59 3.53
683 691 1.519408 ACGCGTGTAGCTTTTTGGAT 58.481 45.000 12.93 0.00 45.59 3.41
684 692 2.690786 ACGCGTGTAGCTTTTTGGATA 58.309 42.857 12.93 0.00 45.59 2.59
685 693 3.068560 ACGCGTGTAGCTTTTTGGATAA 58.931 40.909 12.93 0.00 45.59 1.75
686 694 3.499157 ACGCGTGTAGCTTTTTGGATAAA 59.501 39.130 12.93 0.00 45.59 1.40
687 695 4.088648 CGCGTGTAGCTTTTTGGATAAAG 58.911 43.478 0.00 0.00 45.59 1.85
692 700 7.849515 GCGTGTAGCTTTTTGGATAAAGTATAC 59.150 37.037 0.00 0.00 44.04 1.47
708 716 1.100510 ATACGCGTGTAGCTTGGAGA 58.899 50.000 24.59 0.00 45.59 3.71
752 760 3.104512 ACGAGGTAATTGGTCTCCATGA 58.895 45.455 0.00 0.00 31.53 3.07
754 762 4.019681 ACGAGGTAATTGGTCTCCATGAAA 60.020 41.667 0.00 0.00 31.53 2.69
855 889 1.000955 AGACAGTCATCGTGTCCAACC 59.999 52.381 2.66 0.00 44.65 3.77
869 906 1.695242 TCCAACCCGTTGTGTATCTGT 59.305 47.619 6.81 0.00 38.85 3.41
879 916 0.460284 GTGTATCTGTCTGGCACCCG 60.460 60.000 0.00 0.00 0.00 5.28
890 932 3.603365 GCACCCGCCAATAAAGCT 58.397 55.556 0.00 0.00 0.00 3.74
891 933 2.788515 GCACCCGCCAATAAAGCTA 58.211 52.632 0.00 0.00 0.00 3.32
892 934 1.318576 GCACCCGCCAATAAAGCTAT 58.681 50.000 0.00 0.00 0.00 2.97
893 935 2.500229 GCACCCGCCAATAAAGCTATA 58.500 47.619 0.00 0.00 0.00 1.31
894 936 3.081804 GCACCCGCCAATAAAGCTATAT 58.918 45.455 0.00 0.00 0.00 0.86
895 937 4.258543 GCACCCGCCAATAAAGCTATATA 58.741 43.478 0.00 0.00 0.00 0.86
896 938 4.698304 GCACCCGCCAATAAAGCTATATAA 59.302 41.667 0.00 0.00 0.00 0.98
897 939 5.391629 GCACCCGCCAATAAAGCTATATAAC 60.392 44.000 0.00 0.00 0.00 1.89
898 940 5.123344 CACCCGCCAATAAAGCTATATAACC 59.877 44.000 0.00 0.00 0.00 2.85
899 941 5.221966 ACCCGCCAATAAAGCTATATAACCA 60.222 40.000 0.00 0.00 0.00 3.67
900 942 5.354234 CCCGCCAATAAAGCTATATAACCAG 59.646 44.000 0.00 0.00 0.00 4.00
901 943 5.354234 CCGCCAATAAAGCTATATAACCAGG 59.646 44.000 0.00 0.00 0.00 4.45
902 944 5.163754 CGCCAATAAAGCTATATAACCAGGC 60.164 44.000 0.00 0.00 0.00 4.85
903 945 5.710099 GCCAATAAAGCTATATAACCAGGCA 59.290 40.000 0.00 0.00 36.03 4.75
904 946 6.208599 GCCAATAAAGCTATATAACCAGGCAA 59.791 38.462 0.00 0.00 36.03 4.52
905 947 7.255801 GCCAATAAAGCTATATAACCAGGCAAA 60.256 37.037 0.00 0.00 36.03 3.68
906 948 8.806146 CCAATAAAGCTATATAACCAGGCAAAT 58.194 33.333 0.00 0.00 0.00 2.32
938 984 1.196808 CTGTGGCACGTCGCTTAATTT 59.803 47.619 13.77 0.00 41.91 1.82
939 985 1.604755 TGTGGCACGTCGCTTAATTTT 59.395 42.857 13.77 0.00 41.91 1.82
940 986 2.033550 TGTGGCACGTCGCTTAATTTTT 59.966 40.909 13.77 0.00 41.91 1.94
941 987 3.250280 TGTGGCACGTCGCTTAATTTTTA 59.750 39.130 13.77 0.00 41.91 1.52
942 988 3.600786 GTGGCACGTCGCTTAATTTTTAC 59.399 43.478 0.00 0.00 41.91 2.01
943 989 2.836161 GGCACGTCGCTTAATTTTTACG 59.164 45.455 9.31 0.00 41.91 3.18
944 990 3.472431 GCACGTCGCTTAATTTTTACGT 58.528 40.909 0.00 0.00 43.62 3.57
945 991 3.531827 GCACGTCGCTTAATTTTTACGTC 59.468 43.478 0.00 0.00 41.17 4.34
946 992 3.764889 CACGTCGCTTAATTTTTACGTCG 59.235 43.478 0.00 0.00 41.17 5.12
947 993 3.425193 ACGTCGCTTAATTTTTACGTCGT 59.575 39.130 2.21 2.21 39.11 4.34
948 994 4.615121 ACGTCGCTTAATTTTTACGTCGTA 59.385 37.500 0.00 0.00 44.03 3.43
949 995 4.938073 CGTCGCTTAATTTTTACGTCGTAC 59.062 41.667 4.17 0.00 32.31 3.67
950 996 5.441356 CGTCGCTTAATTTTTACGTCGTACA 60.441 40.000 4.17 0.00 32.31 2.90
951 997 6.460987 GTCGCTTAATTTTTACGTCGTACAT 58.539 36.000 4.17 0.00 0.00 2.29
1004 1055 1.801395 GCAGCGTACGTACATCATGGT 60.801 52.381 24.50 10.95 0.00 3.55
1005 1056 2.542205 GCAGCGTACGTACATCATGGTA 60.542 50.000 24.50 0.00 0.00 3.25
1006 1057 3.040795 CAGCGTACGTACATCATGGTAC 58.959 50.000 24.50 0.00 40.14 3.34
1019 1070 1.954382 CATGGTACTAGGTGCTAGCGA 59.046 52.381 10.77 0.00 37.57 4.93
1026 1077 4.735132 GGTGCTAGCGACGGTGCA 62.735 66.667 10.77 14.05 37.31 4.57
1050 1101 2.974489 GCCGACGACGAGGACAAGA 61.974 63.158 9.28 0.00 42.66 3.02
1060 1111 0.390340 GAGGACAAGAGATGCGTGCA 60.390 55.000 0.00 0.00 0.00 4.57
1072 1123 2.103538 CGTGCATCATGCTTGGCC 59.896 61.111 11.84 0.00 45.31 5.36
1096 1147 1.133199 TGGCCCTCACCATTGTTTTCT 60.133 47.619 0.00 0.00 33.75 2.52
1103 1154 5.534654 CCCTCACCATTGTTTTCTTTGTCTA 59.465 40.000 0.00 0.00 0.00 2.59
1106 1157 5.818336 TCACCATTGTTTTCTTTGTCTACGA 59.182 36.000 0.00 0.00 0.00 3.43
1108 1159 5.238650 ACCATTGTTTTCTTTGTCTACGAGG 59.761 40.000 0.00 0.00 0.00 4.63
1118 1169 5.424252 TCTTTGTCTACGAGGGGTATTCATT 59.576 40.000 0.00 0.00 0.00 2.57
1127 1178 4.381411 GAGGGGTATTCATTTTCTCCGAG 58.619 47.826 0.00 0.00 0.00 4.63
1275 1326 1.374758 GACCTGCAGGGAGAACGTG 60.375 63.158 35.42 8.48 40.27 4.49
1278 1329 1.367471 CTGCAGGGAGAACGTGACA 59.633 57.895 5.57 0.00 37.13 3.58
1398 1449 2.355837 GCCGACGTGCTTCTCACA 60.356 61.111 0.00 0.00 45.92 3.58
1404 1455 2.733542 CGACGTGCTTCTCACAGATGAT 60.734 50.000 0.00 0.00 45.92 2.45
1508 1560 1.065418 ACCTCTATTTTGGGAGTGCCG 60.065 52.381 0.00 0.00 33.83 5.69
1634 1687 4.450976 TGTGTTTTGCTCTAGCTCTTGAA 58.549 39.130 3.26 0.00 42.66 2.69
1712 2387 6.500041 TGCAAGAAAACTAGCATACGTTTTT 58.500 32.000 0.00 0.00 41.77 1.94
1818 2535 4.901881 CGAAATACTTGTCGTGGTTCAAAC 59.098 41.667 0.00 0.00 32.61 2.93
1839 2556 4.989044 ACTTGTTTGAACTAAAACCACGG 58.011 39.130 0.00 0.00 38.93 4.94
1856 2573 1.270947 ACGGCAAGTATTTCGGAACCA 60.271 47.619 0.00 0.00 0.00 3.67
1897 2614 2.363788 TTCTAGACCATGTGACGCAC 57.636 50.000 0.00 3.44 34.56 5.34
1905 2622 1.536766 CCATGTGACGCACTGTTCAAT 59.463 47.619 10.54 0.00 35.11 2.57
2031 2750 2.028567 CCGGCCCATTAAAAACACACAT 60.029 45.455 0.00 0.00 0.00 3.21
2038 2757 6.238239 GCCCATTAAAAACACACATTTCGTTT 60.238 34.615 0.00 0.00 34.42 3.60
2040 2759 6.626882 CCATTAAAAACACACATTTCGTTTGC 59.373 34.615 0.00 0.00 33.33 3.68
2065 2784 4.544689 CAGACTCGGGCGCGAGAG 62.545 72.222 46.47 33.26 39.15 3.20
2087 2806 2.272146 GGCCATGCCTCTCGGAAA 59.728 61.111 0.00 0.00 46.69 3.13
2088 2807 1.821332 GGCCATGCCTCTCGGAAAG 60.821 63.158 0.00 0.00 46.69 2.62
2089 2808 1.221840 GCCATGCCTCTCGGAAAGA 59.778 57.895 0.00 0.00 0.00 2.52
2090 2809 0.392998 GCCATGCCTCTCGGAAAGAA 60.393 55.000 0.00 0.00 32.23 2.52
2091 2810 1.950484 GCCATGCCTCTCGGAAAGAAA 60.950 52.381 0.00 0.00 32.23 2.52
2092 2811 2.436417 CCATGCCTCTCGGAAAGAAAA 58.564 47.619 0.00 0.00 32.23 2.29
2093 2812 2.819608 CCATGCCTCTCGGAAAGAAAAA 59.180 45.455 0.00 0.00 32.23 1.94
2124 2843 2.631160 TTTTTCTTCCGTGAGAGGCA 57.369 45.000 0.00 0.00 0.00 4.75
2125 2844 2.859165 TTTTCTTCCGTGAGAGGCAT 57.141 45.000 0.00 0.00 0.00 4.40
2126 2845 2.099141 TTTCTTCCGTGAGAGGCATG 57.901 50.000 0.00 0.00 0.00 4.06
2131 2850 4.722193 CGTGAGAGGCATGGGTTT 57.278 55.556 0.00 0.00 0.00 3.27
2132 2851 3.853104 CGTGAGAGGCATGGGTTTA 57.147 52.632 0.00 0.00 0.00 2.01
2133 2852 1.369625 CGTGAGAGGCATGGGTTTAC 58.630 55.000 0.00 0.00 0.00 2.01
2134 2853 1.066143 CGTGAGAGGCATGGGTTTACT 60.066 52.381 0.00 0.00 0.00 2.24
2135 2854 2.615493 CGTGAGAGGCATGGGTTTACTT 60.615 50.000 0.00 0.00 0.00 2.24
2136 2855 3.010420 GTGAGAGGCATGGGTTTACTTC 58.990 50.000 0.00 0.00 0.00 3.01
2137 2856 2.026262 TGAGAGGCATGGGTTTACTTCC 60.026 50.000 0.00 0.00 0.00 3.46
2138 2857 1.065418 AGAGGCATGGGTTTACTTCCG 60.065 52.381 0.00 0.00 0.00 4.30
2139 2858 0.679960 AGGCATGGGTTTACTTCCGC 60.680 55.000 0.00 0.00 0.00 5.54
2140 2859 1.427819 GCATGGGTTTACTTCCGCG 59.572 57.895 0.00 0.00 0.00 6.46
2141 2860 1.988834 GCATGGGTTTACTTCCGCGG 61.989 60.000 22.12 22.12 0.00 6.46
2142 2861 1.078001 ATGGGTTTACTTCCGCGGG 60.078 57.895 27.83 13.23 0.00 6.13
2143 2862 1.555477 ATGGGTTTACTTCCGCGGGA 61.555 55.000 27.83 17.96 0.00 5.14
2144 2863 1.449070 GGGTTTACTTCCGCGGGAG 60.449 63.158 32.29 32.29 31.21 4.30
2145 2864 1.449070 GGTTTACTTCCGCGGGAGG 60.449 63.158 36.05 22.26 34.79 4.30
2146 2865 2.104859 GTTTACTTCCGCGGGAGGC 61.105 63.158 36.05 19.26 31.55 4.70
2147 2866 2.585341 TTTACTTCCGCGGGAGGCA 61.585 57.895 36.05 21.35 43.84 4.75
2148 2867 2.791501 TTTACTTCCGCGGGAGGCAC 62.792 60.000 36.05 0.00 43.84 5.01
2163 2882 2.425124 CACGGTTGTGCTTTCGCG 60.425 61.111 0.00 0.00 39.67 5.87
2164 2883 2.586635 ACGGTTGTGCTTTCGCGA 60.587 55.556 3.71 3.71 39.65 5.87
2165 2884 2.170985 CGGTTGTGCTTTCGCGAG 59.829 61.111 9.59 0.00 39.65 5.03
2166 2885 2.307309 CGGTTGTGCTTTCGCGAGA 61.307 57.895 9.59 3.35 39.65 4.04
2176 2895 3.926497 TCGCGAGAAACACGGTTC 58.074 55.556 3.71 0.00 37.03 3.62
2177 2896 1.361271 TCGCGAGAAACACGGTTCT 59.639 52.632 3.71 0.00 40.62 3.01
2178 2897 0.937699 TCGCGAGAAACACGGTTCTG 60.938 55.000 3.71 0.00 37.98 3.02
2179 2898 1.204312 GCGAGAAACACGGTTCTGC 59.796 57.895 1.17 3.14 37.98 4.26
2180 2899 1.222115 GCGAGAAACACGGTTCTGCT 61.222 55.000 1.17 0.00 37.98 4.24
2181 2900 1.217882 CGAGAAACACGGTTCTGCTT 58.782 50.000 1.17 0.00 37.98 3.91
2182 2901 1.597663 CGAGAAACACGGTTCTGCTTT 59.402 47.619 1.17 0.00 37.98 3.51
2183 2902 2.348591 CGAGAAACACGGTTCTGCTTTC 60.349 50.000 1.17 0.00 37.98 2.62
2184 2903 2.612212 GAGAAACACGGTTCTGCTTTCA 59.388 45.455 1.17 0.00 37.98 2.69
2185 2904 2.354821 AGAAACACGGTTCTGCTTTCAC 59.645 45.455 0.00 0.00 36.48 3.18
2186 2905 0.655733 AACACGGTTCTGCTTTCACG 59.344 50.000 0.00 0.00 0.00 4.35
2187 2906 0.179094 ACACGGTTCTGCTTTCACGA 60.179 50.000 0.00 0.00 0.00 4.35
2188 2907 0.934496 CACGGTTCTGCTTTCACGAA 59.066 50.000 0.00 0.00 0.00 3.85
2189 2908 1.329292 CACGGTTCTGCTTTCACGAAA 59.671 47.619 0.00 0.00 0.00 3.46
2191 2910 1.069906 CGGTTCTGCTTTCACGAAAGG 60.070 52.381 18.58 5.76 45.85 3.11
2192 2911 1.335051 GGTTCTGCTTTCACGAAAGGC 60.335 52.381 18.58 12.25 45.85 4.35
2193 2912 1.333619 GTTCTGCTTTCACGAAAGGCA 59.666 47.619 18.58 15.28 45.85 4.75
2194 2913 0.944386 TCTGCTTTCACGAAAGGCAC 59.056 50.000 18.58 5.46 45.85 5.01
2195 2914 0.384725 CTGCTTTCACGAAAGGCACG 60.385 55.000 18.58 9.00 45.85 5.34
2196 2915 1.082104 GCTTTCACGAAAGGCACGG 60.082 57.895 18.58 0.00 45.85 4.94
2197 2916 1.082104 CTTTCACGAAAGGCACGGC 60.082 57.895 11.02 0.00 42.96 5.68
2209 2928 4.717629 CACGGCCGTGCTTCTCGA 62.718 66.667 42.21 0.00 39.39 4.04
2210 2929 3.986006 ACGGCCGTGCTTCTCGAA 61.986 61.111 33.75 0.00 0.00 3.71
2211 2930 2.736995 CGGCCGTGCTTCTCGAAA 60.737 61.111 19.50 0.00 0.00 3.46
2212 2931 2.314647 CGGCCGTGCTTCTCGAAAA 61.315 57.895 19.50 0.00 0.00 2.29
2213 2932 1.206831 GGCCGTGCTTCTCGAAAAC 59.793 57.895 0.00 0.00 0.00 2.43
2214 2933 1.503818 GGCCGTGCTTCTCGAAAACA 61.504 55.000 0.00 0.00 0.00 2.83
2215 2934 0.306533 GCCGTGCTTCTCGAAAACAA 59.693 50.000 0.00 0.00 0.00 2.83
2216 2935 1.268335 GCCGTGCTTCTCGAAAACAAA 60.268 47.619 0.00 0.00 0.00 2.83
2217 2936 2.793237 GCCGTGCTTCTCGAAAACAAAA 60.793 45.455 0.00 0.00 0.00 2.44
2218 2937 3.430931 CCGTGCTTCTCGAAAACAAAAA 58.569 40.909 0.00 0.00 0.00 1.94
2247 2966 9.634163 AACGTGTTTTCTGATTATTATTTTCCC 57.366 29.630 0.00 0.00 0.00 3.97
2248 2967 9.020731 ACGTGTTTTCTGATTATTATTTTCCCT 57.979 29.630 0.00 0.00 0.00 4.20
2249 2968 9.855021 CGTGTTTTCTGATTATTATTTTCCCTT 57.145 29.630 0.00 0.00 0.00 3.95
2254 2973 7.801716 TCTGATTATTATTTTCCCTTCCACG 57.198 36.000 0.00 0.00 0.00 4.94
2255 2974 7.570132 TCTGATTATTATTTTCCCTTCCACGA 58.430 34.615 0.00 0.00 0.00 4.35
2256 2975 7.715249 TCTGATTATTATTTTCCCTTCCACGAG 59.285 37.037 0.00 0.00 0.00 4.18
2257 2976 7.570132 TGATTATTATTTTCCCTTCCACGAGA 58.430 34.615 0.00 0.00 0.00 4.04
2258 2977 8.050325 TGATTATTATTTTCCCTTCCACGAGAA 58.950 33.333 0.00 0.00 0.00 2.87
2264 2983 3.159984 CTTCCACGAGAAGCACGC 58.840 61.111 6.95 0.00 45.38 5.34
2265 2984 1.373497 CTTCCACGAGAAGCACGCT 60.373 57.895 6.95 0.00 45.38 5.07
2266 2985 0.946221 CTTCCACGAGAAGCACGCTT 60.946 55.000 3.43 3.43 45.38 4.68
2267 2986 0.531974 TTCCACGAGAAGCACGCTTT 60.532 50.000 5.63 0.00 36.26 3.51
2268 2987 0.531974 TCCACGAGAAGCACGCTTTT 60.532 50.000 5.63 0.00 36.26 2.27
2269 2988 0.384725 CCACGAGAAGCACGCTTTTG 60.385 55.000 5.63 1.96 36.26 2.44
2270 2989 0.993746 CACGAGAAGCACGCTTTTGC 60.994 55.000 5.63 0.00 43.34 3.68
2277 2996 2.498892 GCACGCTTTTGCTTCTGTG 58.501 52.632 0.00 0.00 44.80 3.66
2278 2997 0.029300 GCACGCTTTTGCTTCTGTGA 59.971 50.000 0.00 0.00 44.80 3.58
2279 2998 1.923316 GCACGCTTTTGCTTCTGTGAG 60.923 52.381 0.00 0.00 44.80 3.51
2280 2999 1.599071 CACGCTTTTGCTTCTGTGAGA 59.401 47.619 0.00 0.00 44.80 3.27
2281 3000 2.032054 CACGCTTTTGCTTCTGTGAGAA 59.968 45.455 0.00 0.00 44.80 2.87
2290 3009 3.892918 CTTCTGTGAGAAGCAAGGTTG 57.107 47.619 0.52 0.00 44.35 3.77
2291 3010 3.209410 CTTCTGTGAGAAGCAAGGTTGT 58.791 45.455 0.52 0.00 44.35 3.32
2292 3011 2.564771 TCTGTGAGAAGCAAGGTTGTG 58.435 47.619 0.00 0.00 0.00 3.33
2293 3012 1.002033 CTGTGAGAAGCAAGGTTGTGC 60.002 52.381 0.00 0.00 45.28 4.57
2310 3029 1.493311 GCTTTTGCGAGAGACACGG 59.507 57.895 0.00 0.00 34.86 4.94
2311 3030 1.901650 GCTTTTGCGAGAGACACGGG 61.902 60.000 0.00 0.00 34.86 5.28
2312 3031 0.600255 CTTTTGCGAGAGACACGGGT 60.600 55.000 0.00 0.00 0.00 5.28
2313 3032 0.599204 TTTTGCGAGAGACACGGGTC 60.599 55.000 10.64 10.64 44.66 4.46
2324 3043 3.692406 ACGGGTCGTGCCTCTTCC 61.692 66.667 0.00 0.00 39.18 3.46
2325 3044 4.796231 CGGGTCGTGCCTCTTCCG 62.796 72.222 0.00 0.00 37.43 4.30
2326 3045 3.379445 GGGTCGTGCCTCTTCCGA 61.379 66.667 0.00 0.00 37.43 4.55
2327 3046 2.654877 GGTCGTGCCTCTTCCGAA 59.345 61.111 0.00 0.00 31.68 4.30
2328 3047 1.005394 GGTCGTGCCTCTTCCGAAA 60.005 57.895 0.00 0.00 31.68 3.46
2329 3048 1.014564 GGTCGTGCCTCTTCCGAAAG 61.015 60.000 0.00 0.00 31.68 2.62
2363 3082 6.801367 CATGCTTCATGTTTAGATTTTCCG 57.199 37.500 0.00 0.00 37.12 4.30
2364 3083 5.957842 TGCTTCATGTTTAGATTTTCCGT 57.042 34.783 0.00 0.00 0.00 4.69
2365 3084 5.938322 TGCTTCATGTTTAGATTTTCCGTC 58.062 37.500 0.00 0.00 0.00 4.79
2366 3085 5.106317 TGCTTCATGTTTAGATTTTCCGTCC 60.106 40.000 0.00 0.00 0.00 4.79
2367 3086 5.539582 TTCATGTTTAGATTTTCCGTCCG 57.460 39.130 0.00 0.00 0.00 4.79
2368 3087 3.936453 TCATGTTTAGATTTTCCGTCCGG 59.064 43.478 0.00 0.00 0.00 5.14
2369 3088 3.405823 TGTTTAGATTTTCCGTCCGGT 57.594 42.857 0.00 0.00 36.47 5.28
2370 3089 4.533919 TGTTTAGATTTTCCGTCCGGTA 57.466 40.909 0.00 0.00 36.47 4.02
2371 3090 5.088680 TGTTTAGATTTTCCGTCCGGTAT 57.911 39.130 0.00 0.00 36.47 2.73
2372 3091 5.490159 TGTTTAGATTTTCCGTCCGGTATT 58.510 37.500 0.00 0.00 36.47 1.89
2373 3092 5.939296 TGTTTAGATTTTCCGTCCGGTATTT 59.061 36.000 0.00 0.00 36.47 1.40
2374 3093 6.430616 TGTTTAGATTTTCCGTCCGGTATTTT 59.569 34.615 0.00 0.00 36.47 1.82
2375 3094 7.040548 TGTTTAGATTTTCCGTCCGGTATTTTT 60.041 33.333 0.00 0.00 36.47 1.94
2376 3095 5.556355 AGATTTTCCGTCCGGTATTTTTC 57.444 39.130 0.00 0.00 36.47 2.29
2377 3096 3.809918 TTTTCCGTCCGGTATTTTTCG 57.190 42.857 0.00 0.00 36.47 3.46
2378 3097 2.453983 TTCCGTCCGGTATTTTTCGT 57.546 45.000 0.00 0.00 36.47 3.85
2379 3098 1.712401 TCCGTCCGGTATTTTTCGTG 58.288 50.000 0.00 0.00 36.47 4.35
2380 3099 1.271934 TCCGTCCGGTATTTTTCGTGA 59.728 47.619 0.00 0.00 36.47 4.35
2381 3100 2.067766 CCGTCCGGTATTTTTCGTGAA 58.932 47.619 0.00 0.00 0.00 3.18
2382 3101 2.479656 CCGTCCGGTATTTTTCGTGAAA 59.520 45.455 0.00 0.00 0.00 2.69
2383 3102 3.059051 CCGTCCGGTATTTTTCGTGAAAA 60.059 43.478 0.00 3.74 41.20 2.29
2384 3103 6.706853 TCCGTCCGGTATTTTTCGTGAAAAA 61.707 40.000 19.39 19.39 43.18 1.94
2405 3124 7.980742 AAAAACAAGTTCGTCAAAACCTATC 57.019 32.000 0.00 0.00 0.00 2.08
2406 3125 6.687081 AAACAAGTTCGTCAAAACCTATCA 57.313 33.333 0.00 0.00 0.00 2.15
2407 3126 6.687081 AACAAGTTCGTCAAAACCTATCAA 57.313 33.333 0.00 0.00 0.00 2.57
2408 3127 6.056428 ACAAGTTCGTCAAAACCTATCAAC 57.944 37.500 0.00 0.00 0.00 3.18
2409 3128 5.587043 ACAAGTTCGTCAAAACCTATCAACA 59.413 36.000 0.00 0.00 0.00 3.33
2410 3129 6.262273 ACAAGTTCGTCAAAACCTATCAACAT 59.738 34.615 0.00 0.00 0.00 2.71
2411 3130 6.241207 AGTTCGTCAAAACCTATCAACATG 57.759 37.500 0.00 0.00 0.00 3.21
2412 3131 5.995282 AGTTCGTCAAAACCTATCAACATGA 59.005 36.000 0.00 0.00 0.00 3.07
2413 3132 6.655003 AGTTCGTCAAAACCTATCAACATGAT 59.345 34.615 0.00 0.00 40.72 2.45
2414 3133 7.822334 AGTTCGTCAAAACCTATCAACATGATA 59.178 33.333 0.00 0.58 38.26 2.15
2415 3134 8.612619 GTTCGTCAAAACCTATCAACATGATAT 58.387 33.333 0.00 0.00 38.54 1.63
2416 3135 8.365399 TCGTCAAAACCTATCAACATGATATC 57.635 34.615 0.00 0.00 38.54 1.63
2417 3136 8.204160 TCGTCAAAACCTATCAACATGATATCT 58.796 33.333 0.00 0.00 38.54 1.98
2418 3137 9.476202 CGTCAAAACCTATCAACATGATATCTA 57.524 33.333 0.00 0.00 38.54 1.98
2433 3152 9.254133 ACATGATATCTAGTTTTGAACATCTCG 57.746 33.333 0.00 0.00 0.00 4.04
2434 3153 9.468532 CATGATATCTAGTTTTGAACATCTCGA 57.531 33.333 3.98 0.00 0.00 4.04
2438 3157 6.871044 TCTAGTTTTGAACATCTCGATTCG 57.129 37.500 0.00 0.00 0.00 3.34
2439 3158 6.617879 TCTAGTTTTGAACATCTCGATTCGA 58.382 36.000 8.70 8.70 0.00 3.71
2450 3169 2.203800 TCGATTCGAGGAATCCAACG 57.796 50.000 4.29 7.31 43.70 4.10
2451 3170 1.202371 TCGATTCGAGGAATCCAACGG 60.202 52.381 15.90 3.76 43.70 4.44
2452 3171 1.470979 CGATTCGAGGAATCCAACGGT 60.471 52.381 15.90 7.79 43.70 4.83
2453 3172 1.933853 GATTCGAGGAATCCAACGGTG 59.066 52.381 15.90 0.00 41.59 4.94
2454 3173 0.970640 TTCGAGGAATCCAACGGTGA 59.029 50.000 0.00 0.00 0.00 4.02
2455 3174 0.970640 TCGAGGAATCCAACGGTGAA 59.029 50.000 0.00 0.00 0.00 3.18
2456 3175 1.345089 TCGAGGAATCCAACGGTGAAA 59.655 47.619 0.00 0.00 0.00 2.69
2457 3176 1.463444 CGAGGAATCCAACGGTGAAAC 59.537 52.381 0.00 0.00 0.00 2.78
2458 3177 1.463444 GAGGAATCCAACGGTGAAACG 59.537 52.381 0.00 0.00 38.12 3.60
2459 3178 0.519961 GGAATCCAACGGTGAAACGG 59.480 55.000 0.00 0.00 43.57 4.44
2469 3188 3.619233 CGGTGAAACGGTTCAAGATTT 57.381 42.857 19.26 0.00 45.29 2.17
2470 3189 3.296628 CGGTGAAACGGTTCAAGATTTG 58.703 45.455 19.26 0.39 45.29 2.32
2471 3190 3.638484 GGTGAAACGGTTCAAGATTTGG 58.362 45.455 19.26 0.00 45.29 3.28
2472 3191 3.316868 GGTGAAACGGTTCAAGATTTGGA 59.683 43.478 19.26 0.00 45.29 3.53
2473 3192 4.287720 GTGAAACGGTTCAAGATTTGGAC 58.712 43.478 19.26 0.00 45.29 4.02
2474 3193 3.002862 TGAAACGGTTCAAGATTTGGACG 59.997 43.478 14.82 0.00 40.87 4.79
2475 3194 0.872388 ACGGTTCAAGATTTGGACGC 59.128 50.000 0.00 0.00 40.19 5.19
2476 3195 0.871722 CGGTTCAAGATTTGGACGCA 59.128 50.000 0.00 0.00 40.19 5.24
2477 3196 1.468520 CGGTTCAAGATTTGGACGCAT 59.531 47.619 0.00 0.00 40.19 4.73
2478 3197 2.728846 CGGTTCAAGATTTGGACGCATG 60.729 50.000 0.00 0.00 40.19 4.06
2479 3198 2.487762 GGTTCAAGATTTGGACGCATGA 59.512 45.455 0.00 0.00 40.19 3.07
2480 3199 3.129287 GGTTCAAGATTTGGACGCATGAT 59.871 43.478 0.00 0.00 40.19 2.45
2481 3200 4.380867 GGTTCAAGATTTGGACGCATGATT 60.381 41.667 0.00 0.00 40.19 2.57
2482 3201 5.163513 GTTCAAGATTTGGACGCATGATTT 58.836 37.500 0.00 0.00 27.74 2.17
2483 3202 6.321717 GTTCAAGATTTGGACGCATGATTTA 58.678 36.000 0.00 0.00 27.74 1.40
2484 3203 6.507958 TCAAGATTTGGACGCATGATTTAA 57.492 33.333 0.00 0.00 0.00 1.52
2485 3204 6.554419 TCAAGATTTGGACGCATGATTTAAG 58.446 36.000 0.00 0.00 0.00 1.85
2486 3205 6.374053 TCAAGATTTGGACGCATGATTTAAGA 59.626 34.615 0.00 0.00 0.00 2.10
2487 3206 6.369059 AGATTTGGACGCATGATTTAAGAG 57.631 37.500 0.00 0.00 0.00 2.85
2488 3207 6.115446 AGATTTGGACGCATGATTTAAGAGA 58.885 36.000 0.00 0.00 0.00 3.10
2489 3208 6.769822 AGATTTGGACGCATGATTTAAGAGAT 59.230 34.615 0.00 0.00 0.00 2.75
2490 3209 7.933577 AGATTTGGACGCATGATTTAAGAGATA 59.066 33.333 0.00 0.00 0.00 1.98
2491 3210 7.857734 TTTGGACGCATGATTTAAGAGATAA 57.142 32.000 0.00 0.00 0.00 1.75
2492 3211 7.857734 TTGGACGCATGATTTAAGAGATAAA 57.142 32.000 0.00 0.00 37.86 1.40
2493 3212 8.450578 TTGGACGCATGATTTAAGAGATAAAT 57.549 30.769 0.00 0.00 44.92 1.40
2494 3213 8.450578 TGGACGCATGATTTAAGAGATAAATT 57.549 30.769 0.00 0.00 42.84 1.82
2495 3214 9.554395 TGGACGCATGATTTAAGAGATAAATTA 57.446 29.630 0.00 0.00 42.84 1.40
2540 3259 3.788333 AATGAAATCTCCCATGTTGCG 57.212 42.857 0.00 0.00 0.00 4.85
2541 3260 2.488204 TGAAATCTCCCATGTTGCGA 57.512 45.000 0.00 0.00 0.00 5.10
2542 3261 2.083774 TGAAATCTCCCATGTTGCGAC 58.916 47.619 0.00 0.00 0.00 5.19
2543 3262 2.083774 GAAATCTCCCATGTTGCGACA 58.916 47.619 9.77 9.77 40.71 4.35
2544 3263 2.198827 AATCTCCCATGTTGCGACAA 57.801 45.000 11.67 0.00 39.66 3.18
2545 3264 1.742761 ATCTCCCATGTTGCGACAAG 58.257 50.000 11.67 6.60 39.66 3.16
2546 3265 0.396435 TCTCCCATGTTGCGACAAGT 59.604 50.000 11.67 0.00 39.66 3.16
2547 3266 0.518636 CTCCCATGTTGCGACAAGTG 59.481 55.000 11.67 5.76 39.66 3.16
2548 3267 0.888736 TCCCATGTTGCGACAAGTGG 60.889 55.000 16.92 16.92 39.66 4.00
2549 3268 1.081242 CCATGTTGCGACAAGTGGC 60.081 57.895 11.67 0.00 39.66 5.01
2556 3275 2.174107 CGACAAGTGGCGCACATG 59.826 61.111 10.83 11.41 40.91 3.21
2557 3276 2.126734 GACAAGTGGCGCACATGC 60.127 61.111 10.83 0.00 36.67 4.06
2567 3286 2.126734 GCACATGCGCCACTTGTC 60.127 61.111 4.18 0.00 34.59 3.18
2568 3287 2.906939 GCACATGCGCCACTTGTCA 61.907 57.895 4.18 0.00 34.59 3.58
2569 3288 1.081906 CACATGCGCCACTTGTCAC 60.082 57.895 4.18 0.00 34.59 3.67
2570 3289 1.525765 ACATGCGCCACTTGTCACA 60.526 52.632 4.18 0.00 31.29 3.58
2571 3290 1.100463 ACATGCGCCACTTGTCACAA 61.100 50.000 4.18 0.00 31.29 3.33
2572 3291 0.661187 CATGCGCCACTTGTCACAAC 60.661 55.000 4.18 0.00 0.00 3.32
2573 3292 1.795170 ATGCGCCACTTGTCACAACC 61.795 55.000 4.18 0.00 0.00 3.77
2574 3293 2.186826 GCGCCACTTGTCACAACCT 61.187 57.895 0.00 0.00 0.00 3.50
2575 3294 1.648720 CGCCACTTGTCACAACCTG 59.351 57.895 0.00 0.00 0.00 4.00
2576 3295 0.813610 CGCCACTTGTCACAACCTGA 60.814 55.000 0.00 0.00 0.00 3.86
2577 3296 0.947244 GCCACTTGTCACAACCTGAG 59.053 55.000 0.00 0.00 0.00 3.35
2578 3297 1.475034 GCCACTTGTCACAACCTGAGA 60.475 52.381 0.00 0.00 0.00 3.27
2579 3298 2.917933 CCACTTGTCACAACCTGAGAA 58.082 47.619 0.00 0.00 31.50 2.87
2582 3301 3.199880 CTTGTCACAACCTGAGAAGGT 57.800 47.619 0.00 0.00 43.56 3.50
2583 3302 2.620251 TGTCACAACCTGAGAAGGTG 57.380 50.000 0.00 0.00 42.20 4.00
2584 3303 2.115427 TGTCACAACCTGAGAAGGTGA 58.885 47.619 0.00 0.00 42.20 4.02
2585 3304 2.103094 TGTCACAACCTGAGAAGGTGAG 59.897 50.000 0.00 0.00 42.20 3.51
2586 3305 2.365617 GTCACAACCTGAGAAGGTGAGA 59.634 50.000 0.00 0.00 42.20 3.27
2587 3306 3.038280 TCACAACCTGAGAAGGTGAGAA 58.962 45.455 0.00 0.00 42.20 2.87
2588 3307 3.648067 TCACAACCTGAGAAGGTGAGAAT 59.352 43.478 0.00 0.00 42.20 2.40
2589 3308 3.750130 CACAACCTGAGAAGGTGAGAATG 59.250 47.826 0.00 0.00 42.20 2.67
2590 3309 3.648067 ACAACCTGAGAAGGTGAGAATGA 59.352 43.478 0.00 0.00 42.20 2.57
2591 3310 4.288105 ACAACCTGAGAAGGTGAGAATGAT 59.712 41.667 0.00 0.00 42.20 2.45
2592 3311 4.751767 ACCTGAGAAGGTGAGAATGATC 57.248 45.455 0.00 0.00 41.33 2.92
2593 3312 4.360889 ACCTGAGAAGGTGAGAATGATCT 58.639 43.478 0.00 0.00 41.33 2.75
2594 3313 4.782156 ACCTGAGAAGGTGAGAATGATCTT 59.218 41.667 0.00 0.00 41.33 2.40
2595 3314 5.250313 ACCTGAGAAGGTGAGAATGATCTTT 59.750 40.000 0.00 0.00 41.33 2.52
2596 3315 5.585445 CCTGAGAAGGTGAGAATGATCTTTG 59.415 44.000 0.00 0.00 35.54 2.77
2597 3316 4.940046 TGAGAAGGTGAGAATGATCTTTGC 59.060 41.667 0.00 0.00 35.54 3.68
2598 3317 4.914983 AGAAGGTGAGAATGATCTTTGCA 58.085 39.130 0.00 0.00 35.54 4.08
2599 3318 5.319453 AGAAGGTGAGAATGATCTTTGCAA 58.681 37.500 0.00 0.00 35.54 4.08
2600 3319 5.415077 AGAAGGTGAGAATGATCTTTGCAAG 59.585 40.000 0.00 0.00 35.54 4.01
2601 3320 4.015084 AGGTGAGAATGATCTTTGCAAGG 58.985 43.478 1.35 1.35 35.54 3.61
2602 3321 4.012374 GGTGAGAATGATCTTTGCAAGGA 58.988 43.478 14.17 14.17 35.54 3.36
2603 3322 4.096081 GGTGAGAATGATCTTTGCAAGGAG 59.904 45.833 16.88 4.58 35.54 3.69
2604 3323 4.699257 GTGAGAATGATCTTTGCAAGGAGT 59.301 41.667 16.88 5.44 35.54 3.85
2605 3324 5.877012 GTGAGAATGATCTTTGCAAGGAGTA 59.123 40.000 16.88 8.48 35.54 2.59
2606 3325 5.877012 TGAGAATGATCTTTGCAAGGAGTAC 59.123 40.000 16.88 10.84 35.54 2.73
2607 3326 6.059787 AGAATGATCTTTGCAAGGAGTACT 57.940 37.500 16.88 0.00 29.15 2.73
2608 3327 6.112058 AGAATGATCTTTGCAAGGAGTACTC 58.888 40.000 16.88 14.87 29.15 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
423 424 1.189524 TTCTCCATGGAACCCGTCGT 61.190 55.000 17.00 0.00 0.00 4.34
464 465 1.593750 CATGCTAGCTCACGGCCTC 60.594 63.158 17.23 0.00 43.05 4.70
527 528 4.560128 TCTTCGACAACTGGAAGATTCTG 58.440 43.478 0.00 0.00 42.62 3.02
568 569 0.243907 CCTCGCCTCTTTGACTTCGA 59.756 55.000 0.00 0.00 0.00 3.71
569 570 0.243907 TCCTCGCCTCTTTGACTTCG 59.756 55.000 0.00 0.00 0.00 3.79
570 571 1.546476 TCTCCTCGCCTCTTTGACTTC 59.454 52.381 0.00 0.00 0.00 3.01
571 572 1.273886 GTCTCCTCGCCTCTTTGACTT 59.726 52.381 0.00 0.00 0.00 3.01
572 573 0.892063 GTCTCCTCGCCTCTTTGACT 59.108 55.000 0.00 0.00 0.00 3.41
573 574 0.108567 GGTCTCCTCGCCTCTTTGAC 60.109 60.000 0.00 0.00 0.00 3.18
661 669 1.527736 CCAAAAAGCTACACGCGTACA 59.472 47.619 13.44 0.65 45.59 2.90
662 670 1.794116 TCCAAAAAGCTACACGCGTAC 59.206 47.619 13.44 1.40 45.59 3.67
663 671 2.151881 TCCAAAAAGCTACACGCGTA 57.848 45.000 13.44 0.00 45.59 4.42
664 672 1.519408 ATCCAAAAAGCTACACGCGT 58.481 45.000 5.58 5.58 45.59 6.01
666 674 5.043189 ACTTTATCCAAAAAGCTACACGC 57.957 39.130 0.00 0.00 39.59 5.34
667 675 8.054236 CGTATACTTTATCCAAAAAGCTACACG 58.946 37.037 0.56 0.00 39.59 4.49
668 676 7.849515 GCGTATACTTTATCCAAAAAGCTACAC 59.150 37.037 0.56 0.00 39.59 2.90
669 677 7.254185 CGCGTATACTTTATCCAAAAAGCTACA 60.254 37.037 0.00 0.00 39.59 2.74
670 678 7.061634 CGCGTATACTTTATCCAAAAAGCTAC 58.938 38.462 0.00 0.00 39.59 3.58
671 679 6.757947 ACGCGTATACTTTATCCAAAAAGCTA 59.242 34.615 11.67 0.00 39.59 3.32
672 680 5.583457 ACGCGTATACTTTATCCAAAAAGCT 59.417 36.000 11.67 0.00 39.59 3.74
673 681 5.675444 CACGCGTATACTTTATCCAAAAAGC 59.325 40.000 13.44 0.00 39.59 3.51
674 682 6.768078 ACACGCGTATACTTTATCCAAAAAG 58.232 36.000 13.44 0.00 41.35 2.27
675 683 6.724694 ACACGCGTATACTTTATCCAAAAA 57.275 33.333 13.44 0.00 0.00 1.94
676 684 6.019640 GCTACACGCGTATACTTTATCCAAAA 60.020 38.462 13.44 0.00 0.00 2.44
677 685 5.459762 GCTACACGCGTATACTTTATCCAAA 59.540 40.000 13.44 0.00 0.00 3.28
678 686 4.977963 GCTACACGCGTATACTTTATCCAA 59.022 41.667 13.44 0.00 0.00 3.53
679 687 4.276678 AGCTACACGCGTATACTTTATCCA 59.723 41.667 13.44 0.00 45.59 3.41
680 688 4.791974 AGCTACACGCGTATACTTTATCC 58.208 43.478 13.44 0.00 45.59 2.59
681 689 5.116680 CCAAGCTACACGCGTATACTTTATC 59.883 44.000 13.44 0.00 45.59 1.75
682 690 4.980434 CCAAGCTACACGCGTATACTTTAT 59.020 41.667 13.44 0.00 45.59 1.40
683 691 4.096231 TCCAAGCTACACGCGTATACTTTA 59.904 41.667 13.44 1.69 45.59 1.85
684 692 3.119388 TCCAAGCTACACGCGTATACTTT 60.119 43.478 13.44 1.04 45.59 2.66
685 693 2.424601 TCCAAGCTACACGCGTATACTT 59.575 45.455 13.44 10.82 45.59 2.24
686 694 2.019249 TCCAAGCTACACGCGTATACT 58.981 47.619 13.44 4.18 45.59 2.12
687 695 2.032550 TCTCCAAGCTACACGCGTATAC 59.967 50.000 13.44 1.39 45.59 1.47
692 700 2.152699 CGTCTCCAAGCTACACGCG 61.153 63.158 3.53 3.53 45.59 6.01
708 716 5.952526 TGACACGATATATACATCACCGT 57.047 39.130 0.00 0.00 0.00 4.83
752 760 5.670792 TCCTCGTTGTATACACAGGATTT 57.329 39.130 17.85 0.00 35.67 2.17
754 762 5.421056 TCTTTCCTCGTTGTATACACAGGAT 59.579 40.000 20.65 0.00 36.07 3.24
838 855 2.840974 GGGTTGGACACGATGACTG 58.159 57.895 0.00 0.00 0.00 3.51
855 889 1.337728 TGCCAGACAGATACACAACGG 60.338 52.381 0.00 0.00 0.00 4.44
879 916 5.710099 TGCCTGGTTATATAGCTTTATTGGC 59.290 40.000 1.83 9.00 35.22 4.52
884 926 7.610305 GCCTATTTGCCTGGTTATATAGCTTTA 59.390 37.037 0.00 0.00 0.00 1.85
885 927 6.434340 GCCTATTTGCCTGGTTATATAGCTTT 59.566 38.462 0.00 0.00 0.00 3.51
890 932 5.748670 TCGCCTATTTGCCTGGTTATATA 57.251 39.130 0.00 0.00 0.00 0.86
891 933 4.634012 TCGCCTATTTGCCTGGTTATAT 57.366 40.909 0.00 0.00 0.00 0.86
892 934 4.575885 GATCGCCTATTTGCCTGGTTATA 58.424 43.478 0.00 0.00 0.00 0.98
893 935 3.412386 GATCGCCTATTTGCCTGGTTAT 58.588 45.455 0.00 0.00 0.00 1.89
894 936 2.805295 CGATCGCCTATTTGCCTGGTTA 60.805 50.000 0.26 0.00 0.00 2.85
895 937 1.680338 GATCGCCTATTTGCCTGGTT 58.320 50.000 0.00 0.00 0.00 3.67
896 938 0.532862 CGATCGCCTATTTGCCTGGT 60.533 55.000 0.26 0.00 0.00 4.00
897 939 0.249868 TCGATCGCCTATTTGCCTGG 60.250 55.000 11.09 0.00 0.00 4.45
898 940 1.143305 CTCGATCGCCTATTTGCCTG 58.857 55.000 11.09 0.00 0.00 4.85
899 941 0.601311 GCTCGATCGCCTATTTGCCT 60.601 55.000 11.09 0.00 0.00 4.75
900 942 0.601311 AGCTCGATCGCCTATTTGCC 60.601 55.000 11.09 0.00 0.00 4.52
901 943 0.510359 CAGCTCGATCGCCTATTTGC 59.490 55.000 11.09 5.78 0.00 3.68
902 944 1.524355 CACAGCTCGATCGCCTATTTG 59.476 52.381 11.09 5.40 0.00 2.32
903 945 1.539065 CCACAGCTCGATCGCCTATTT 60.539 52.381 11.09 0.00 0.00 1.40
904 946 0.032678 CCACAGCTCGATCGCCTATT 59.967 55.000 11.09 0.00 0.00 1.73
905 947 1.662608 CCACAGCTCGATCGCCTAT 59.337 57.895 11.09 0.00 0.00 2.57
906 948 3.120105 CCACAGCTCGATCGCCTA 58.880 61.111 11.09 0.00 0.00 3.93
938 984 4.317628 CGATCTCGAGATGTACGACGTAAA 60.318 45.833 31.88 4.51 43.02 2.01
939 985 3.181178 CGATCTCGAGATGTACGACGTAA 59.819 47.826 31.88 0.00 43.02 3.18
940 986 2.723143 CGATCTCGAGATGTACGACGTA 59.277 50.000 31.88 2.97 43.02 3.57
941 987 1.521840 CGATCTCGAGATGTACGACGT 59.478 52.381 31.88 5.52 43.02 4.34
942 988 1.785430 TCGATCTCGAGATGTACGACG 59.215 52.381 31.88 25.02 44.22 5.12
981 1032 2.574222 GATGTACGTACGCTGCGCC 61.574 63.158 23.51 12.10 0.00 6.53
1004 1055 0.107508 ACCGTCGCTAGCACCTAGTA 60.108 55.000 16.45 0.00 36.53 1.82
1005 1056 1.378250 ACCGTCGCTAGCACCTAGT 60.378 57.895 16.45 1.96 36.53 2.57
1006 1057 1.064296 CACCGTCGCTAGCACCTAG 59.936 63.158 16.45 1.28 37.16 3.02
1026 1077 4.462417 CTCGTCGTCGGCGCTTCT 62.462 66.667 15.63 0.00 38.14 2.85
1040 1091 1.416813 GCACGCATCTCTTGTCCTCG 61.417 60.000 0.00 0.00 0.00 4.63
1060 1111 3.127099 CCATGAGGCCAAGCATGAT 57.873 52.632 25.71 0.00 43.43 2.45
1081 1132 6.018262 TCGTAGACAAAGAAAACAATGGTGAG 60.018 38.462 0.00 0.00 0.00 3.51
1087 1138 4.760204 CCCCTCGTAGACAAAGAAAACAAT 59.240 41.667 0.00 0.00 0.00 2.71
1093 1144 4.773674 TGAATACCCCTCGTAGACAAAGAA 59.226 41.667 0.00 0.00 0.00 2.52
1096 1147 5.687166 AATGAATACCCCTCGTAGACAAA 57.313 39.130 0.00 0.00 0.00 2.83
1103 1154 3.431766 CGGAGAAAATGAATACCCCTCGT 60.432 47.826 0.00 0.00 0.00 4.18
1106 1157 3.433740 GCTCGGAGAAAATGAATACCCCT 60.434 47.826 9.69 0.00 34.09 4.79
1108 1159 2.544267 CGCTCGGAGAAAATGAATACCC 59.456 50.000 9.69 0.00 34.09 3.69
1127 1178 4.736896 AGAAACTCGGGCCGTCGC 62.737 66.667 27.32 11.94 0.00 5.19
1275 1326 1.458064 CCGTACAACACCGTGATTGTC 59.542 52.381 17.29 11.23 39.67 3.18
1278 1329 0.249953 TGCCGTACAACACCGTGATT 60.250 50.000 5.28 0.00 0.00 2.57
1288 1339 0.464735 AGCACCTTGTTGCCGTACAA 60.465 50.000 0.00 0.00 44.14 2.41
1300 1351 4.066139 GGCCCATCCCAGCACCTT 62.066 66.667 0.00 0.00 0.00 3.50
1419 1470 2.579249 GCGAGCAGCTCTGAGTCG 60.579 66.667 20.39 7.94 44.04 4.18
1692 2367 9.962759 CGTAATAAAAACGTATGCTAGTTTTCT 57.037 29.630 6.75 1.97 46.11 2.52
1818 2535 3.794564 GCCGTGGTTTTAGTTCAAACAAG 59.205 43.478 0.00 0.00 38.25 3.16
1839 2556 2.163613 CCCTTGGTTCCGAAATACTTGC 59.836 50.000 0.00 0.00 0.00 4.01
1886 2603 2.975410 ATTGAACAGTGCGTCACATG 57.025 45.000 11.58 0.00 36.74 3.21
1887 2604 3.314913 TGAAATTGAACAGTGCGTCACAT 59.685 39.130 11.58 0.00 36.74 3.21
1932 2649 3.148279 GGTCTCCGATCACGCCCT 61.148 66.667 0.00 0.00 38.29 5.19
1933 2650 3.140225 GAGGTCTCCGATCACGCCC 62.140 68.421 0.00 0.00 38.29 6.13
2022 2741 2.545731 GGGCAAACGAAATGTGTGTTT 58.454 42.857 0.00 0.00 38.16 2.83
2031 2750 2.026879 GCAAGCGGGCAAACGAAA 59.973 55.556 0.00 0.00 35.47 3.46
2105 2824 2.631160 TGCCTCTCACGGAAGAAAAA 57.369 45.000 0.00 0.00 0.00 1.94
2106 2825 2.426522 CATGCCTCTCACGGAAGAAAA 58.573 47.619 0.00 0.00 0.00 2.29
2107 2826 1.339055 CCATGCCTCTCACGGAAGAAA 60.339 52.381 0.00 0.00 26.83 2.52
2108 2827 0.250234 CCATGCCTCTCACGGAAGAA 59.750 55.000 0.00 0.00 26.83 2.52
2109 2828 1.617018 CCCATGCCTCTCACGGAAGA 61.617 60.000 0.00 0.00 26.83 2.87
2110 2829 1.153289 CCCATGCCTCTCACGGAAG 60.153 63.158 0.00 0.00 26.83 3.46
2111 2830 1.488705 AACCCATGCCTCTCACGGAA 61.489 55.000 0.00 0.00 26.83 4.30
2112 2831 1.488705 AAACCCATGCCTCTCACGGA 61.489 55.000 0.00 0.00 26.83 4.69
2113 2832 0.251916 TAAACCCATGCCTCTCACGG 59.748 55.000 0.00 0.00 0.00 4.94
2114 2833 1.066143 AGTAAACCCATGCCTCTCACG 60.066 52.381 0.00 0.00 0.00 4.35
2115 2834 2.789409 AGTAAACCCATGCCTCTCAC 57.211 50.000 0.00 0.00 0.00 3.51
2116 2835 2.026262 GGAAGTAAACCCATGCCTCTCA 60.026 50.000 0.00 0.00 0.00 3.27
2117 2836 2.644676 GGAAGTAAACCCATGCCTCTC 58.355 52.381 0.00 0.00 0.00 3.20
2118 2837 1.065418 CGGAAGTAAACCCATGCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
2119 2838 1.379527 CGGAAGTAAACCCATGCCTC 58.620 55.000 0.00 0.00 0.00 4.70
2120 2839 0.679960 GCGGAAGTAAACCCATGCCT 60.680 55.000 0.00 0.00 0.00 4.75
2121 2840 1.807226 GCGGAAGTAAACCCATGCC 59.193 57.895 0.00 0.00 0.00 4.40
2122 2841 1.427819 CGCGGAAGTAAACCCATGC 59.572 57.895 0.00 0.00 0.00 4.06
2123 2842 1.373590 CCCGCGGAAGTAAACCCATG 61.374 60.000 30.73 0.00 0.00 3.66
2124 2843 1.078001 CCCGCGGAAGTAAACCCAT 60.078 57.895 30.73 0.00 0.00 4.00
2125 2844 2.175035 CTCCCGCGGAAGTAAACCCA 62.175 60.000 30.73 0.00 0.00 4.51
2126 2845 1.449070 CTCCCGCGGAAGTAAACCC 60.449 63.158 30.73 0.00 0.00 4.11
2127 2846 1.449070 CCTCCCGCGGAAGTAAACC 60.449 63.158 30.73 0.00 0.00 3.27
2128 2847 2.104859 GCCTCCCGCGGAAGTAAAC 61.105 63.158 30.73 0.00 0.00 2.01
2129 2848 2.266689 GCCTCCCGCGGAAGTAAA 59.733 61.111 30.73 3.31 0.00 2.01
2130 2849 2.998480 TGCCTCCCGCGGAAGTAA 60.998 61.111 30.73 1.98 42.08 2.24
2131 2850 3.766691 GTGCCTCCCGCGGAAGTA 61.767 66.667 30.73 11.50 42.08 2.24
2161 2880 1.204312 GCAGAACCGTGTTTCTCGC 59.796 57.895 0.00 0.00 33.31 5.03
2162 2881 1.217882 AAGCAGAACCGTGTTTCTCG 58.782 50.000 0.00 0.00 33.31 4.04
2163 2882 2.612212 TGAAAGCAGAACCGTGTTTCTC 59.388 45.455 0.00 0.00 33.31 2.87
2164 2883 2.354821 GTGAAAGCAGAACCGTGTTTCT 59.645 45.455 0.00 0.00 36.18 2.52
2165 2884 2.716398 GTGAAAGCAGAACCGTGTTTC 58.284 47.619 0.00 0.00 0.00 2.78
2166 2885 1.063469 CGTGAAAGCAGAACCGTGTTT 59.937 47.619 0.00 0.00 0.00 2.83
2167 2886 0.655733 CGTGAAAGCAGAACCGTGTT 59.344 50.000 0.00 0.00 0.00 3.32
2168 2887 0.179094 TCGTGAAAGCAGAACCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
2169 2888 0.934496 TTCGTGAAAGCAGAACCGTG 59.066 50.000 0.00 0.00 0.00 4.94
2170 2889 1.597663 CTTTCGTGAAAGCAGAACCGT 59.402 47.619 9.23 0.00 40.94 4.83
2171 2890 1.069906 CCTTTCGTGAAAGCAGAACCG 60.070 52.381 15.28 0.00 44.76 4.44
2172 2891 1.335051 GCCTTTCGTGAAAGCAGAACC 60.335 52.381 15.28 0.00 44.76 3.62
2173 2892 1.333619 TGCCTTTCGTGAAAGCAGAAC 59.666 47.619 15.28 4.44 44.76 3.01
2174 2893 1.333619 GTGCCTTTCGTGAAAGCAGAA 59.666 47.619 15.28 0.00 44.76 3.02
2175 2894 0.944386 GTGCCTTTCGTGAAAGCAGA 59.056 50.000 15.28 0.71 44.76 4.26
2176 2895 0.384725 CGTGCCTTTCGTGAAAGCAG 60.385 55.000 15.28 5.73 44.76 4.24
2177 2896 1.646540 CGTGCCTTTCGTGAAAGCA 59.353 52.632 15.28 13.61 44.76 3.91
2178 2897 1.082104 CCGTGCCTTTCGTGAAAGC 60.082 57.895 15.28 11.61 44.76 3.51
2179 2898 1.082104 GCCGTGCCTTTCGTGAAAG 60.082 57.895 14.05 14.05 45.47 2.62
2180 2899 2.548295 GGCCGTGCCTTTCGTGAAA 61.548 57.895 7.58 0.00 46.69 2.69
2181 2900 2.975799 GGCCGTGCCTTTCGTGAA 60.976 61.111 7.58 0.00 46.69 3.18
2193 2912 2.981977 TTTTCGAGAAGCACGGCCGT 62.982 55.000 28.70 28.70 0.00 5.68
2194 2913 2.314647 TTTTCGAGAAGCACGGCCG 61.315 57.895 26.86 26.86 0.00 6.13
2195 2914 1.206831 GTTTTCGAGAAGCACGGCC 59.793 57.895 0.00 0.00 0.00 6.13
2196 2915 0.306533 TTGTTTTCGAGAAGCACGGC 59.693 50.000 0.00 0.00 0.00 5.68
2197 2916 2.748461 TTTGTTTTCGAGAAGCACGG 57.252 45.000 0.00 0.00 0.00 4.94
2221 2940 9.634163 GGGAAAATAATAATCAGAAAACACGTT 57.366 29.630 0.00 0.00 0.00 3.99
2222 2941 9.020731 AGGGAAAATAATAATCAGAAAACACGT 57.979 29.630 0.00 0.00 0.00 4.49
2223 2942 9.855021 AAGGGAAAATAATAATCAGAAAACACG 57.145 29.630 0.00 0.00 0.00 4.49
2228 2947 8.682710 CGTGGAAGGGAAAATAATAATCAGAAA 58.317 33.333 0.00 0.00 0.00 2.52
2229 2948 8.050325 TCGTGGAAGGGAAAATAATAATCAGAA 58.950 33.333 0.00 0.00 0.00 3.02
2230 2949 7.570132 TCGTGGAAGGGAAAATAATAATCAGA 58.430 34.615 0.00 0.00 0.00 3.27
2231 2950 7.715249 TCTCGTGGAAGGGAAAATAATAATCAG 59.285 37.037 0.00 0.00 0.00 2.90
2232 2951 7.570132 TCTCGTGGAAGGGAAAATAATAATCA 58.430 34.615 0.00 0.00 0.00 2.57
2233 2952 8.446599 TTCTCGTGGAAGGGAAAATAATAATC 57.553 34.615 0.00 0.00 0.00 1.75
2234 2953 8.451908 CTTCTCGTGGAAGGGAAAATAATAAT 57.548 34.615 11.17 0.00 45.55 1.28
2235 2954 7.859325 CTTCTCGTGGAAGGGAAAATAATAA 57.141 36.000 11.17 0.00 45.55 1.40
2248 2967 0.531974 AAAGCGTGCTTCTCGTGGAA 60.532 50.000 7.67 0.00 34.84 3.53
2249 2968 0.531974 AAAAGCGTGCTTCTCGTGGA 60.532 50.000 7.67 0.00 34.84 4.02
2250 2969 0.384725 CAAAAGCGTGCTTCTCGTGG 60.385 55.000 7.67 0.00 34.84 4.94
2251 2970 0.993746 GCAAAAGCGTGCTTCTCGTG 60.994 55.000 7.67 5.55 41.51 4.35
2252 2971 1.279840 GCAAAAGCGTGCTTCTCGT 59.720 52.632 7.67 0.00 41.51 4.18
2253 2972 4.121490 GCAAAAGCGTGCTTCTCG 57.879 55.556 7.67 0.93 41.51 4.04
2259 2978 0.029300 TCACAGAAGCAAAAGCGTGC 59.971 50.000 2.26 2.26 45.28 5.34
2260 2979 1.599071 TCTCACAGAAGCAAAAGCGTG 59.401 47.619 0.00 0.00 0.00 5.34
2261 2980 1.953559 TCTCACAGAAGCAAAAGCGT 58.046 45.000 0.00 0.00 0.00 5.07
2262 2981 2.913613 CTTCTCACAGAAGCAAAAGCG 58.086 47.619 0.38 0.00 44.35 4.68
2271 2990 2.945008 CACAACCTTGCTTCTCACAGAA 59.055 45.455 0.00 0.00 32.50 3.02
2272 2991 2.564771 CACAACCTTGCTTCTCACAGA 58.435 47.619 0.00 0.00 0.00 3.41
2273 2992 1.002033 GCACAACCTTGCTTCTCACAG 60.002 52.381 0.00 0.00 39.59 3.66
2274 2993 1.024271 GCACAACCTTGCTTCTCACA 58.976 50.000 0.00 0.00 39.59 3.58
2275 2994 3.853623 GCACAACCTTGCTTCTCAC 57.146 52.632 0.00 0.00 39.59 3.51
2282 3001 0.527385 TCGCAAAAGCACAACCTTGC 60.527 50.000 0.00 0.00 43.34 4.01
2283 3002 1.065401 TCTCGCAAAAGCACAACCTTG 59.935 47.619 0.00 0.00 0.00 3.61
2284 3003 1.334869 CTCTCGCAAAAGCACAACCTT 59.665 47.619 0.00 0.00 0.00 3.50
2285 3004 0.947244 CTCTCGCAAAAGCACAACCT 59.053 50.000 0.00 0.00 0.00 3.50
2286 3005 0.944386 TCTCTCGCAAAAGCACAACC 59.056 50.000 0.00 0.00 0.00 3.77
2287 3006 1.330521 TGTCTCTCGCAAAAGCACAAC 59.669 47.619 0.00 0.00 0.00 3.32
2288 3007 1.330521 GTGTCTCTCGCAAAAGCACAA 59.669 47.619 0.00 0.00 0.00 3.33
2289 3008 0.937304 GTGTCTCTCGCAAAAGCACA 59.063 50.000 0.00 0.00 0.00 4.57
2290 3009 0.111089 CGTGTCTCTCGCAAAAGCAC 60.111 55.000 0.00 0.00 0.00 4.40
2291 3010 1.221466 CCGTGTCTCTCGCAAAAGCA 61.221 55.000 0.00 0.00 0.00 3.91
2292 3011 1.493311 CCGTGTCTCTCGCAAAAGC 59.507 57.895 0.00 0.00 0.00 3.51
2293 3012 0.600255 ACCCGTGTCTCTCGCAAAAG 60.600 55.000 0.00 0.00 0.00 2.27
2294 3013 0.599204 GACCCGTGTCTCTCGCAAAA 60.599 55.000 0.00 0.00 38.53 2.44
2295 3014 1.006571 GACCCGTGTCTCTCGCAAA 60.007 57.895 0.00 0.00 38.53 3.68
2296 3015 2.649034 GACCCGTGTCTCTCGCAA 59.351 61.111 0.00 0.00 38.53 4.85
2297 3016 3.733960 CGACCCGTGTCTCTCGCA 61.734 66.667 0.00 0.00 39.47 5.10
2298 3017 3.735029 ACGACCCGTGTCTCTCGC 61.735 66.667 0.00 0.00 39.18 5.03
2307 3026 3.692406 GGAAGAGGCACGACCCGT 61.692 66.667 0.00 0.00 42.36 5.28
2308 3027 4.796231 CGGAAGAGGCACGACCCG 62.796 72.222 0.00 0.00 40.58 5.28
2309 3028 2.444700 TTTCGGAAGAGGCACGACCC 62.445 60.000 0.00 0.00 43.69 4.46
2310 3029 1.005394 TTTCGGAAGAGGCACGACC 60.005 57.895 0.00 0.00 43.69 4.79
2311 3030 1.014564 CCTTTCGGAAGAGGCACGAC 61.015 60.000 4.56 0.00 43.69 4.34
2312 3031 1.183030 TCCTTTCGGAAGAGGCACGA 61.183 55.000 4.56 0.00 43.69 4.35
2313 3032 0.320421 TTCCTTTCGGAAGAGGCACG 60.320 55.000 4.56 0.00 44.28 5.34
2314 3033 3.625745 TTCCTTTCGGAAGAGGCAC 57.374 52.632 4.56 0.00 44.28 5.01
2340 3059 6.324819 ACGGAAAATCTAAACATGAAGCATG 58.675 36.000 0.00 5.90 46.18 4.06
2341 3060 6.404734 GGACGGAAAATCTAAACATGAAGCAT 60.405 38.462 0.00 0.00 0.00 3.79
2342 3061 5.106317 GGACGGAAAATCTAAACATGAAGCA 60.106 40.000 0.00 0.00 0.00 3.91
2343 3062 5.332707 GGACGGAAAATCTAAACATGAAGC 58.667 41.667 0.00 0.00 0.00 3.86
2344 3063 5.447279 CCGGACGGAAAATCTAAACATGAAG 60.447 44.000 4.40 0.00 37.50 3.02
2345 3064 4.393680 CCGGACGGAAAATCTAAACATGAA 59.606 41.667 4.40 0.00 37.50 2.57
2346 3065 3.936453 CCGGACGGAAAATCTAAACATGA 59.064 43.478 4.40 0.00 37.50 3.07
2347 3066 3.687698 ACCGGACGGAAAATCTAAACATG 59.312 43.478 18.80 0.00 38.96 3.21
2348 3067 3.946606 ACCGGACGGAAAATCTAAACAT 58.053 40.909 18.80 0.00 38.96 2.71
2349 3068 3.405823 ACCGGACGGAAAATCTAAACA 57.594 42.857 18.80 0.00 38.96 2.83
2350 3069 6.426980 AAATACCGGACGGAAAATCTAAAC 57.573 37.500 18.80 0.00 38.96 2.01
2351 3070 7.451501 AAAAATACCGGACGGAAAATCTAAA 57.548 32.000 18.80 0.00 38.96 1.85
2352 3071 6.183360 CGAAAAATACCGGACGGAAAATCTAA 60.183 38.462 18.80 0.00 38.96 2.10
2353 3072 5.291614 CGAAAAATACCGGACGGAAAATCTA 59.708 40.000 18.80 0.00 38.96 1.98
2354 3073 4.093850 CGAAAAATACCGGACGGAAAATCT 59.906 41.667 18.80 0.00 38.96 2.40
2355 3074 4.142838 ACGAAAAATACCGGACGGAAAATC 60.143 41.667 18.80 6.82 38.96 2.17
2356 3075 3.752747 ACGAAAAATACCGGACGGAAAAT 59.247 39.130 18.80 5.07 38.96 1.82
2357 3076 3.059051 CACGAAAAATACCGGACGGAAAA 60.059 43.478 18.80 2.75 38.96 2.29
2358 3077 2.479656 CACGAAAAATACCGGACGGAAA 59.520 45.455 18.80 5.39 38.96 3.13
2359 3078 2.067766 CACGAAAAATACCGGACGGAA 58.932 47.619 18.80 0.00 38.96 4.30
2360 3079 1.271934 TCACGAAAAATACCGGACGGA 59.728 47.619 18.80 1.45 38.96 4.69
2361 3080 1.712401 TCACGAAAAATACCGGACGG 58.288 50.000 9.46 9.56 42.03 4.79
2362 3081 3.791993 TTTCACGAAAAATACCGGACG 57.208 42.857 9.46 4.58 0.00 4.79
2381 3100 7.540299 TGATAGGTTTTGACGAACTTGTTTTT 58.460 30.769 0.00 0.00 0.00 1.94
2382 3101 7.090953 TGATAGGTTTTGACGAACTTGTTTT 57.909 32.000 0.00 0.00 0.00 2.43
2383 3102 6.687081 TGATAGGTTTTGACGAACTTGTTT 57.313 33.333 0.00 0.00 0.00 2.83
2384 3103 6.094325 TGTTGATAGGTTTTGACGAACTTGTT 59.906 34.615 0.00 0.00 0.00 2.83
2385 3104 5.587043 TGTTGATAGGTTTTGACGAACTTGT 59.413 36.000 0.00 0.00 0.00 3.16
2386 3105 6.055231 TGTTGATAGGTTTTGACGAACTTG 57.945 37.500 0.00 0.00 0.00 3.16
2387 3106 6.485313 TCATGTTGATAGGTTTTGACGAACTT 59.515 34.615 0.00 0.00 0.00 2.66
2388 3107 5.995282 TCATGTTGATAGGTTTTGACGAACT 59.005 36.000 0.00 0.00 0.00 3.01
2389 3108 6.236017 TCATGTTGATAGGTTTTGACGAAC 57.764 37.500 0.00 0.00 0.00 3.95
2390 3109 8.731275 ATATCATGTTGATAGGTTTTGACGAA 57.269 30.769 0.00 0.00 42.04 3.85
2391 3110 8.204160 AGATATCATGTTGATAGGTTTTGACGA 58.796 33.333 5.32 0.00 42.04 4.20
2392 3111 8.370493 AGATATCATGTTGATAGGTTTTGACG 57.630 34.615 5.32 0.00 42.04 4.35
2407 3126 9.254133 CGAGATGTTCAAAACTAGATATCATGT 57.746 33.333 5.32 0.10 0.00 3.21
2408 3127 9.468532 TCGAGATGTTCAAAACTAGATATCATG 57.531 33.333 5.32 0.00 0.00 3.07
2412 3131 9.186323 CGAATCGAGATGTTCAAAACTAGATAT 57.814 33.333 0.00 0.00 0.00 1.63
2413 3132 8.403236 TCGAATCGAGATGTTCAAAACTAGATA 58.597 33.333 0.00 0.00 0.00 1.98
2414 3133 7.258441 TCGAATCGAGATGTTCAAAACTAGAT 58.742 34.615 0.00 0.00 0.00 1.98
2415 3134 6.617879 TCGAATCGAGATGTTCAAAACTAGA 58.382 36.000 0.00 0.00 0.00 2.43
2416 3135 6.871044 TCGAATCGAGATGTTCAAAACTAG 57.129 37.500 0.00 0.00 0.00 2.57
2431 3150 1.202371 CCGTTGGATTCCTCGAATCGA 60.202 52.381 17.60 4.91 46.47 3.59
2432 3151 1.209128 CCGTTGGATTCCTCGAATCG 58.791 55.000 17.60 0.00 46.47 3.34
2433 3152 1.933853 CACCGTTGGATTCCTCGAATC 59.066 52.381 17.60 5.92 45.26 2.52
2434 3153 1.553248 TCACCGTTGGATTCCTCGAAT 59.447 47.619 17.60 6.95 34.71 3.34
2435 3154 0.970640 TCACCGTTGGATTCCTCGAA 59.029 50.000 17.60 0.00 0.00 3.71
2436 3155 0.970640 TTCACCGTTGGATTCCTCGA 59.029 50.000 17.60 0.00 0.00 4.04
2437 3156 1.463444 GTTTCACCGTTGGATTCCTCG 59.537 52.381 3.95 8.76 0.00 4.63
2438 3157 1.463444 CGTTTCACCGTTGGATTCCTC 59.537 52.381 3.95 0.00 0.00 3.71
2439 3158 1.519408 CGTTTCACCGTTGGATTCCT 58.481 50.000 3.95 0.00 0.00 3.36
2440 3159 0.519961 CCGTTTCACCGTTGGATTCC 59.480 55.000 0.00 0.00 0.00 3.01
2441 3160 1.232119 ACCGTTTCACCGTTGGATTC 58.768 50.000 0.00 0.00 0.00 2.52
2442 3161 1.605232 GAACCGTTTCACCGTTGGATT 59.395 47.619 0.00 0.00 0.00 3.01
2443 3162 1.232119 GAACCGTTTCACCGTTGGAT 58.768 50.000 0.00 0.00 0.00 3.41
2444 3163 0.107800 TGAACCGTTTCACCGTTGGA 60.108 50.000 0.00 0.00 36.79 3.53
2445 3164 0.733729 TTGAACCGTTTCACCGTTGG 59.266 50.000 0.00 0.00 41.64 3.77
2446 3165 1.666700 TCTTGAACCGTTTCACCGTTG 59.333 47.619 0.00 0.00 41.64 4.10
2447 3166 2.027003 TCTTGAACCGTTTCACCGTT 57.973 45.000 0.00 0.00 41.64 4.44
2448 3167 2.249844 ATCTTGAACCGTTTCACCGT 57.750 45.000 0.00 0.00 41.64 4.83
2449 3168 3.296628 CAAATCTTGAACCGTTTCACCG 58.703 45.455 0.00 0.00 41.64 4.94
2450 3169 3.316868 TCCAAATCTTGAACCGTTTCACC 59.683 43.478 0.00 0.00 41.64 4.02
2451 3170 4.287720 GTCCAAATCTTGAACCGTTTCAC 58.712 43.478 0.00 0.00 41.64 3.18
2452 3171 3.002862 CGTCCAAATCTTGAACCGTTTCA 59.997 43.478 0.00 0.00 40.14 2.69
2453 3172 3.551551 CGTCCAAATCTTGAACCGTTTC 58.448 45.455 0.00 0.00 0.00 2.78
2454 3173 2.287368 GCGTCCAAATCTTGAACCGTTT 60.287 45.455 0.00 0.00 0.00 3.60
2455 3174 1.265905 GCGTCCAAATCTTGAACCGTT 59.734 47.619 0.00 0.00 0.00 4.44
2456 3175 0.872388 GCGTCCAAATCTTGAACCGT 59.128 50.000 0.00 0.00 0.00 4.83
2457 3176 0.871722 TGCGTCCAAATCTTGAACCG 59.128 50.000 0.00 0.00 0.00 4.44
2458 3177 2.487762 TCATGCGTCCAAATCTTGAACC 59.512 45.455 0.00 0.00 0.00 3.62
2459 3178 3.829886 TCATGCGTCCAAATCTTGAAC 57.170 42.857 0.00 0.00 0.00 3.18
2460 3179 5.389859 AAATCATGCGTCCAAATCTTGAA 57.610 34.783 0.00 0.00 0.00 2.69
2461 3180 6.374053 TCTTAAATCATGCGTCCAAATCTTGA 59.626 34.615 0.00 0.00 0.00 3.02
2462 3181 6.554419 TCTTAAATCATGCGTCCAAATCTTG 58.446 36.000 0.00 0.00 0.00 3.02
2463 3182 6.599244 TCTCTTAAATCATGCGTCCAAATCTT 59.401 34.615 0.00 0.00 0.00 2.40
2464 3183 6.115446 TCTCTTAAATCATGCGTCCAAATCT 58.885 36.000 0.00 0.00 0.00 2.40
2465 3184 6.363577 TCTCTTAAATCATGCGTCCAAATC 57.636 37.500 0.00 0.00 0.00 2.17
2466 3185 6.949352 ATCTCTTAAATCATGCGTCCAAAT 57.051 33.333 0.00 0.00 0.00 2.32
2467 3186 7.857734 TTATCTCTTAAATCATGCGTCCAAA 57.142 32.000 0.00 0.00 0.00 3.28
2468 3187 7.857734 TTTATCTCTTAAATCATGCGTCCAA 57.142 32.000 0.00 0.00 0.00 3.53
2469 3188 8.450578 AATTTATCTCTTAAATCATGCGTCCA 57.549 30.769 0.00 0.00 39.15 4.02
2517 3236 4.931002 CGCAACATGGGAGATTTCATTTTT 59.069 37.500 0.00 0.00 31.21 1.94
2518 3237 4.220382 TCGCAACATGGGAGATTTCATTTT 59.780 37.500 0.00 0.00 34.23 1.82
2519 3238 3.763360 TCGCAACATGGGAGATTTCATTT 59.237 39.130 0.00 0.00 34.23 2.32
2520 3239 3.129287 GTCGCAACATGGGAGATTTCATT 59.871 43.478 0.00 0.00 40.09 2.57
2521 3240 2.684881 GTCGCAACATGGGAGATTTCAT 59.315 45.455 0.00 0.00 40.09 2.57
2522 3241 2.083774 GTCGCAACATGGGAGATTTCA 58.916 47.619 0.00 0.00 40.09 2.69
2523 3242 2.083774 TGTCGCAACATGGGAGATTTC 58.916 47.619 0.00 0.00 40.09 2.17
2524 3243 2.198827 TGTCGCAACATGGGAGATTT 57.801 45.000 0.00 0.00 40.09 2.17
2525 3244 2.086869 CTTGTCGCAACATGGGAGATT 58.913 47.619 0.00 0.00 40.09 2.40
2526 3245 1.003580 ACTTGTCGCAACATGGGAGAT 59.996 47.619 0.00 0.00 40.09 2.75
2527 3246 0.396435 ACTTGTCGCAACATGGGAGA 59.604 50.000 0.00 0.00 40.09 3.71
2528 3247 0.518636 CACTTGTCGCAACATGGGAG 59.481 55.000 0.00 0.00 40.09 4.30
2529 3248 0.888736 CCACTTGTCGCAACATGGGA 60.889 55.000 0.00 0.00 36.34 4.37
2530 3249 1.580942 CCACTTGTCGCAACATGGG 59.419 57.895 0.00 0.00 33.59 4.00
2531 3250 1.081242 GCCACTTGTCGCAACATGG 60.081 57.895 0.00 0.00 38.21 3.66
2532 3251 1.440850 CGCCACTTGTCGCAACATG 60.441 57.895 0.00 0.00 34.73 3.21
2533 3252 2.945984 CGCCACTTGTCGCAACAT 59.054 55.556 0.00 0.00 34.73 2.71
2539 3258 2.174107 CATGTGCGCCACTTGTCG 59.826 61.111 4.18 0.00 35.64 4.35
2540 3259 2.126734 GCATGTGCGCCACTTGTC 60.127 61.111 4.18 5.08 40.25 3.18
2550 3269 2.126734 GACAAGTGGCGCATGTGC 60.127 61.111 23.05 23.05 37.78 4.57
2551 3270 1.081906 GTGACAAGTGGCGCATGTG 60.082 57.895 14.19 0.66 32.77 3.21
2552 3271 1.100463 TTGTGACAAGTGGCGCATGT 61.100 50.000 10.83 8.85 43.96 3.21
2553 3272 0.661187 GTTGTGACAAGTGGCGCATG 60.661 55.000 10.83 4.85 43.96 4.06
2554 3273 1.654220 GTTGTGACAAGTGGCGCAT 59.346 52.632 10.83 0.00 43.96 4.73
2555 3274 2.477176 GGTTGTGACAAGTGGCGCA 61.477 57.895 10.83 0.00 42.66 6.09
2556 3275 2.186826 AGGTTGTGACAAGTGGCGC 61.187 57.895 0.00 0.00 0.00 6.53
2557 3276 0.813610 TCAGGTTGTGACAAGTGGCG 60.814 55.000 0.00 0.00 0.00 5.69
2558 3277 0.947244 CTCAGGTTGTGACAAGTGGC 59.053 55.000 0.00 0.00 0.00 5.01
2559 3278 2.620251 TCTCAGGTTGTGACAAGTGG 57.380 50.000 0.00 0.00 0.00 4.00
2560 3279 2.874701 CCTTCTCAGGTTGTGACAAGTG 59.125 50.000 0.00 0.00 31.05 3.16
2561 3280 3.199880 CCTTCTCAGGTTGTGACAAGT 57.800 47.619 0.00 0.00 31.05 3.16
2573 3292 5.064962 GCAAAGATCATTCTCACCTTCTCAG 59.935 44.000 0.00 0.00 0.00 3.35
2574 3293 4.940046 GCAAAGATCATTCTCACCTTCTCA 59.060 41.667 0.00 0.00 0.00 3.27
2575 3294 4.940046 TGCAAAGATCATTCTCACCTTCTC 59.060 41.667 0.00 0.00 0.00 2.87
2576 3295 4.914983 TGCAAAGATCATTCTCACCTTCT 58.085 39.130 0.00 0.00 0.00 2.85
2577 3296 5.633830 TTGCAAAGATCATTCTCACCTTC 57.366 39.130 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.