Multiple sequence alignment - TraesCS5B01G060300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G060300 chr5B 100.000 4084 0 0 1 4084 67494217 67490134 0.000000e+00 7542.0
1 TraesCS5B01G060300 chr5B 92.576 889 58 4 1017 1904 67333795 67332914 0.000000e+00 1269.0
2 TraesCS5B01G060300 chr5B 90.064 624 62 0 2452 3075 67332752 67332129 0.000000e+00 809.0
3 TraesCS5B01G060300 chr5B 86.970 330 35 7 3404 3733 115345188 115345509 8.340000e-97 364.0
4 TraesCS5B01G060300 chr5B 85.246 122 18 0 1979 2100 679318750 679318629 4.290000e-25 126.0
5 TraesCS5B01G060300 chr5B 83.824 136 17 5 1967 2101 191438421 191438552 1.540000e-24 124.0
6 TraesCS5B01G060300 chr5B 83.824 136 17 5 1967 2101 398454826 398454695 1.540000e-24 124.0
7 TraesCS5B01G060300 chr5D 94.688 1299 67 2 636 1934 63151912 63153208 0.000000e+00 2015.0
8 TraesCS5B01G060300 chr5D 93.899 1262 66 9 2097 3348 63153224 63154484 0.000000e+00 1893.0
9 TraesCS5B01G060300 chr5D 90.121 992 69 20 930 1904 63267613 63268592 0.000000e+00 1262.0
10 TraesCS5B01G060300 chr5D 88.619 659 75 0 2437 3095 63268737 63269395 0.000000e+00 802.0
11 TraesCS5B01G060300 chr5D 85.455 385 31 8 3346 3712 335779532 335779155 1.070000e-100 377.0
12 TraesCS5B01G060300 chr5A 92.752 1159 80 4 2187 3343 52448154 52449310 0.000000e+00 1672.0
13 TraesCS5B01G060300 chr5A 94.183 1083 49 7 877 1957 52446757 52447827 0.000000e+00 1639.0
14 TraesCS5B01G060300 chr5A 90.200 1000 63 22 930 1909 52711184 52712168 0.000000e+00 1271.0
15 TraesCS5B01G060300 chr5A 89.596 644 67 0 2452 3095 52712241 52712884 0.000000e+00 819.0
16 TraesCS5B01G060300 chr5A 93.680 269 17 0 3075 3343 52449834 52450102 1.770000e-108 403.0
17 TraesCS5B01G060300 chr5A 92.222 270 20 1 3075 3343 52481949 52482218 8.280000e-102 381.0
18 TraesCS5B01G060300 chr5A 91.209 91 8 0 796 886 52446652 52446742 1.540000e-24 124.0
19 TraesCS5B01G060300 chr1B 94.788 614 30 2 1 612 259856407 259857020 0.000000e+00 955.0
20 TraesCS5B01G060300 chr1B 95.091 550 25 2 65 612 259873057 259873606 0.000000e+00 865.0
21 TraesCS5B01G060300 chr1B 93.158 570 36 3 46 612 219580158 219580727 0.000000e+00 833.0
22 TraesCS5B01G060300 chr1B 91.860 602 35 13 19 612 242551634 242551039 0.000000e+00 828.0
23 TraesCS5B01G060300 chr1B 89.557 316 32 1 3404 3719 53083859 53084173 2.290000e-107 399.0
24 TraesCS5B01G060300 chr1B 83.824 136 17 5 1967 2101 25556414 25556283 1.540000e-24 124.0
25 TraesCS5B01G060300 chr3B 96.000 575 21 2 42 614 725506992 725507566 0.000000e+00 933.0
26 TraesCS5B01G060300 chr3B 92.333 600 38 8 19 613 513525427 513526023 0.000000e+00 846.0
27 TraesCS5B01G060300 chr3B 85.950 121 16 1 1979 2099 28647214 28647333 1.190000e-25 128.0
28 TraesCS5B01G060300 chr2B 91.611 596 44 6 21 612 224609118 224608525 0.000000e+00 819.0
29 TraesCS5B01G060300 chr2B 91.611 596 44 6 21 612 349522456 349521863 0.000000e+00 819.0
30 TraesCS5B01G060300 chr2B 89.789 617 55 8 1 612 519376224 519375611 0.000000e+00 784.0
31 TraesCS5B01G060300 chr2B 81.739 115 16 5 633 745 635082800 635082911 1.560000e-14 91.6
32 TraesCS5B01G060300 chr6A 79.967 609 100 14 1092 1680 59320535 59321141 2.920000e-116 429.0
33 TraesCS5B01G060300 chr6B 79.332 629 114 13 1088 1702 113588243 113588869 1.050000e-115 427.0
34 TraesCS5B01G060300 chr6B 97.368 38 0 1 3726 3763 77804056 77804020 3.410000e-06 63.9
35 TraesCS5B01G060300 chr6D 79.114 632 108 15 1092 1702 44496319 44496947 8.170000e-112 414.0
36 TraesCS5B01G060300 chr7B 87.135 342 36 6 3404 3745 663605150 663605483 8.280000e-102 381.0
37 TraesCS5B01G060300 chr7B 87.135 342 37 5 3404 3745 663658816 663659150 8.280000e-102 381.0
38 TraesCS5B01G060300 chr7B 86.842 342 37 6 3404 3745 663607069 663607402 3.850000e-100 375.0
39 TraesCS5B01G060300 chr7B 86.257 342 39 6 3404 3745 663711524 663711857 8.340000e-97 364.0
40 TraesCS5B01G060300 chr7B 85.965 342 40 6 3404 3745 663603226 663603559 3.880000e-95 359.0
41 TraesCS5B01G060300 chr7B 84.795 342 39 6 3404 3745 663636105 663636433 8.460000e-87 331.0
42 TraesCS5B01G060300 chr7B 85.522 297 35 6 3449 3745 663656976 663657264 1.840000e-78 303.0
43 TraesCS5B01G060300 chr3D 80.739 379 70 3 1123 1500 319866881 319867257 3.990000e-75 292.0
44 TraesCS5B01G060300 chr4D 86.179 123 17 0 1979 2101 349574948 349574826 2.560000e-27 134.0
45 TraesCS5B01G060300 chr4D 82.979 141 17 7 1967 2104 7876060 7876196 1.990000e-23 121.0
46 TraesCS5B01G060300 chr4B 89.423 104 11 0 1978 2081 510174295 510174398 9.210000e-27 132.0
47 TraesCS5B01G060300 chr4B 96.875 32 0 1 3810 3841 26071277 26071247 7.000000e-03 52.8
48 TraesCS5B01G060300 chr7D 85.156 128 17 2 1979 2105 249621875 249622001 3.310000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G060300 chr5B 67490134 67494217 4083 True 7542.000000 7542 100.000000 1 4084 1 chr5B.!!$R1 4083
1 TraesCS5B01G060300 chr5B 67332129 67333795 1666 True 1039.000000 1269 91.320000 1017 3075 2 chr5B.!!$R4 2058
2 TraesCS5B01G060300 chr5D 63151912 63154484 2572 False 1954.000000 2015 94.293500 636 3348 2 chr5D.!!$F1 2712
3 TraesCS5B01G060300 chr5D 63267613 63269395 1782 False 1032.000000 1262 89.370000 930 3095 2 chr5D.!!$F2 2165
4 TraesCS5B01G060300 chr5A 52711184 52712884 1700 False 1045.000000 1271 89.898000 930 3095 2 chr5A.!!$F3 2165
5 TraesCS5B01G060300 chr5A 52446652 52450102 3450 False 959.500000 1672 92.956000 796 3343 4 chr5A.!!$F2 2547
6 TraesCS5B01G060300 chr1B 259856407 259857020 613 False 955.000000 955 94.788000 1 612 1 chr1B.!!$F3 611
7 TraesCS5B01G060300 chr1B 259873057 259873606 549 False 865.000000 865 95.091000 65 612 1 chr1B.!!$F4 547
8 TraesCS5B01G060300 chr1B 219580158 219580727 569 False 833.000000 833 93.158000 46 612 1 chr1B.!!$F2 566
9 TraesCS5B01G060300 chr1B 242551039 242551634 595 True 828.000000 828 91.860000 19 612 1 chr1B.!!$R2 593
10 TraesCS5B01G060300 chr3B 725506992 725507566 574 False 933.000000 933 96.000000 42 614 1 chr3B.!!$F3 572
11 TraesCS5B01G060300 chr3B 513525427 513526023 596 False 846.000000 846 92.333000 19 613 1 chr3B.!!$F2 594
12 TraesCS5B01G060300 chr2B 224608525 224609118 593 True 819.000000 819 91.611000 21 612 1 chr2B.!!$R1 591
13 TraesCS5B01G060300 chr2B 349521863 349522456 593 True 819.000000 819 91.611000 21 612 1 chr2B.!!$R2 591
14 TraesCS5B01G060300 chr2B 519375611 519376224 613 True 784.000000 784 89.789000 1 612 1 chr2B.!!$R3 611
15 TraesCS5B01G060300 chr6A 59320535 59321141 606 False 429.000000 429 79.967000 1092 1680 1 chr6A.!!$F1 588
16 TraesCS5B01G060300 chr6B 113588243 113588869 626 False 427.000000 427 79.332000 1088 1702 1 chr6B.!!$F1 614
17 TraesCS5B01G060300 chr6D 44496319 44496947 628 False 414.000000 414 79.114000 1092 1702 1 chr6D.!!$F1 610
18 TraesCS5B01G060300 chr7B 663603226 663607402 4176 False 371.666667 381 86.647333 3404 3745 3 chr7B.!!$F3 341
19 TraesCS5B01G060300 chr7B 663656976 663659150 2174 False 342.000000 381 86.328500 3404 3745 2 chr7B.!!$F4 341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 904 0.963856 ACGATCCACCACGTGCTCTA 60.964 55.0 10.91 0.00 41.17 2.43 F
1025 1113 0.798771 GACTTCACGGCGCTAGTCTG 60.799 60.0 21.71 7.77 35.33 3.51 F
1927 2041 2.028420 TGCTCATTCCTCAACCATCG 57.972 50.0 0.00 0.00 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1933 0.320247 CGTCCTTCTGCAGCTTGAGT 60.320 55.0 9.47 0.0 0.00 3.41 R
2374 2781 0.400594 ACCTCCTCCGTTCCAAAAGG 59.599 55.0 0.00 0.0 0.00 3.11 R
3358 4581 0.036306 CAAGTTAAGGCACCTCCGGT 59.964 55.0 0.00 0.0 40.77 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 232 3.815757 GCCCCTCTTCCTCTCATTTTGTT 60.816 47.826 0.00 0.00 0.00 2.83
392 437 3.511477 TCTACCTAGATCATCAAGCCCC 58.489 50.000 0.00 0.00 0.00 5.80
438 483 6.926272 GGATGAACTCTACCATGTATCTTGTC 59.074 42.308 0.00 0.00 0.00 3.18
442 487 5.772004 ACTCTACCATGTATCTTGTCTCCT 58.228 41.667 0.00 0.00 0.00 3.69
501 546 3.244078 TGTTGGTCTAGTGGATGTGTGAC 60.244 47.826 0.00 0.00 0.00 3.67
577 623 1.228276 GGATCCCCCTCCAATTCGC 60.228 63.158 0.00 0.00 35.24 4.70
614 660 1.892209 GGTTCCACCCTACAACACAG 58.108 55.000 0.00 0.00 30.04 3.66
615 661 1.544759 GGTTCCACCCTACAACACAGG 60.545 57.143 0.00 0.00 30.04 4.00
619 665 3.166434 CCCTACAACACAGGGCCA 58.834 61.111 6.18 0.00 46.27 5.36
620 666 1.303317 CCCTACAACACAGGGCCAC 60.303 63.158 6.18 0.00 46.27 5.01
621 667 1.761174 CCTACAACACAGGGCCACT 59.239 57.895 6.18 0.00 0.00 4.00
629 675 2.044650 CAGGGCCACTGTGATGGG 60.045 66.667 9.86 0.00 42.42 4.00
630 676 3.341629 AGGGCCACTGTGATGGGG 61.342 66.667 9.86 0.00 40.43 4.96
632 678 4.052518 GGCCACTGTGATGGGGCT 62.053 66.667 9.86 0.00 45.68 5.19
633 679 2.036256 GCCACTGTGATGGGGCTT 59.964 61.111 9.86 0.00 43.09 4.35
634 680 1.607467 GCCACTGTGATGGGGCTTT 60.607 57.895 9.86 0.00 43.09 3.51
666 712 6.183360 GCTGTGTGCATCATTAATGTCTAGTT 60.183 38.462 14.97 0.00 42.31 2.24
668 714 6.654582 TGTGTGCATCATTAATGTCTAGTTGT 59.345 34.615 14.97 0.00 37.71 3.32
685 731 8.918658 GTCTAGTTGTACATTTTGTCGATGTAA 58.081 33.333 0.00 0.00 40.53 2.41
695 741 2.181125 TGTCGATGTAAAGGCTGGGTA 58.819 47.619 0.00 0.00 0.00 3.69
696 742 2.093869 TGTCGATGTAAAGGCTGGGTAC 60.094 50.000 0.00 0.00 0.00 3.34
700 746 3.945285 CGATGTAAAGGCTGGGTACAATT 59.055 43.478 9.25 0.00 31.85 2.32
712 758 5.822519 GCTGGGTACAATTGATATCTTCACA 59.177 40.000 13.59 0.00 32.84 3.58
758 804 9.846248 ATCGAAGAAAAATGAAATTTAGTGAGG 57.154 29.630 0.00 0.00 43.36 3.86
806 852 2.053627 GCTCTGCACCATTTGTTTTCG 58.946 47.619 0.00 0.00 0.00 3.46
820 866 5.723672 TTGTTTTCGACTCTACTCCATCT 57.276 39.130 0.00 0.00 0.00 2.90
858 904 0.963856 ACGATCCACCACGTGCTCTA 60.964 55.000 10.91 0.00 41.17 2.43
894 963 1.927710 GCAGCAACCTTTTTCAGCTCG 60.928 52.381 0.00 0.00 32.35 5.03
906 975 1.107114 TCAGCTCGGATCTCTTCACC 58.893 55.000 0.00 0.00 0.00 4.02
968 1038 1.004758 TAGATGGGGCCTCCTTGCT 59.995 57.895 0.00 3.09 36.20 3.91
971 1041 1.305549 ATGGGGCCTCCTTGCTTTG 60.306 57.895 0.00 0.00 36.20 2.77
1025 1113 0.798771 GACTTCACGGCGCTAGTCTG 60.799 60.000 21.71 7.77 35.33 3.51
1680 1786 2.327343 CGACCTGTACCCGTCGTCA 61.327 63.158 18.64 0.00 45.20 4.35
1827 1933 3.138798 GACCTGCTCGGCGTCCTA 61.139 66.667 6.85 0.00 35.61 2.94
1910 2024 6.801862 GCCGTCATTTTGGTAAGATATTATGC 59.198 38.462 0.00 0.00 0.00 3.14
1927 2041 2.028420 TGCTCATTCCTCAACCATCG 57.972 50.000 0.00 0.00 0.00 3.84
1934 2048 6.292919 GCTCATTCCTCAACCATCGTTTATAC 60.293 42.308 0.00 0.00 0.00 1.47
1936 2050 6.761242 TCATTCCTCAACCATCGTTTATACTG 59.239 38.462 0.00 0.00 0.00 2.74
1937 2051 5.670792 TCCTCAACCATCGTTTATACTGT 57.329 39.130 0.00 0.00 0.00 3.55
1938 2052 6.778834 TCCTCAACCATCGTTTATACTGTA 57.221 37.500 0.00 0.00 0.00 2.74
1939 2053 7.172868 TCCTCAACCATCGTTTATACTGTAA 57.827 36.000 0.00 0.00 0.00 2.41
1963 2077 3.759581 ACGGTTCTGTACTACTTCCTCA 58.240 45.455 0.00 0.00 0.00 3.86
1964 2078 4.147321 ACGGTTCTGTACTACTTCCTCAA 58.853 43.478 0.00 0.00 0.00 3.02
1965 2079 4.586001 ACGGTTCTGTACTACTTCCTCAAA 59.414 41.667 0.00 0.00 0.00 2.69
1966 2080 5.069516 ACGGTTCTGTACTACTTCCTCAAAA 59.930 40.000 0.00 0.00 0.00 2.44
1967 2081 5.634020 CGGTTCTGTACTACTTCCTCAAAAG 59.366 44.000 0.00 0.00 0.00 2.27
1968 2082 6.516194 CGGTTCTGTACTACTTCCTCAAAAGA 60.516 42.308 0.00 0.00 0.00 2.52
1969 2083 6.869388 GGTTCTGTACTACTTCCTCAAAAGAG 59.131 42.308 0.00 0.00 0.00 2.85
1970 2084 7.255871 GGTTCTGTACTACTTCCTCAAAAGAGA 60.256 40.741 0.00 0.00 0.00 3.10
1971 2085 8.308207 GTTCTGTACTACTTCCTCAAAAGAGAT 58.692 37.037 0.00 0.00 0.00 2.75
1972 2086 8.423906 TCTGTACTACTTCCTCAAAAGAGATT 57.576 34.615 0.00 0.00 0.00 2.40
1973 2087 8.524487 TCTGTACTACTTCCTCAAAAGAGATTC 58.476 37.037 0.00 0.00 0.00 2.52
1974 2088 7.612677 TGTACTACTTCCTCAAAAGAGATTCC 58.387 38.462 0.00 0.00 0.00 3.01
1975 2089 6.688073 ACTACTTCCTCAAAAGAGATTCCA 57.312 37.500 0.00 0.00 0.00 3.53
1976 2090 6.706295 ACTACTTCCTCAAAAGAGATTCCAG 58.294 40.000 0.00 0.00 0.00 3.86
1977 2091 4.331108 ACTTCCTCAAAAGAGATTCCAGC 58.669 43.478 0.00 0.00 0.00 4.85
1978 2092 3.356529 TCCTCAAAAGAGATTCCAGCC 57.643 47.619 0.00 0.00 0.00 4.85
1979 2093 2.644299 TCCTCAAAAGAGATTCCAGCCA 59.356 45.455 0.00 0.00 0.00 4.75
1980 2094 2.751806 CCTCAAAAGAGATTCCAGCCAC 59.248 50.000 0.00 0.00 0.00 5.01
1981 2095 3.560882 CCTCAAAAGAGATTCCAGCCACT 60.561 47.826 0.00 0.00 0.00 4.00
1982 2096 4.323792 CCTCAAAAGAGATTCCAGCCACTA 60.324 45.833 0.00 0.00 0.00 2.74
1983 2097 5.435291 CTCAAAAGAGATTCCAGCCACTAT 58.565 41.667 0.00 0.00 0.00 2.12
1984 2098 5.188434 TCAAAAGAGATTCCAGCCACTATG 58.812 41.667 0.00 0.00 0.00 2.23
1985 2099 5.045651 TCAAAAGAGATTCCAGCCACTATGA 60.046 40.000 0.00 0.00 0.00 2.15
1986 2100 5.441718 AAAGAGATTCCAGCCACTATGAA 57.558 39.130 0.00 0.00 0.00 2.57
1987 2101 4.414337 AGAGATTCCAGCCACTATGAAC 57.586 45.455 0.00 0.00 0.00 3.18
1988 2102 4.036518 AGAGATTCCAGCCACTATGAACT 58.963 43.478 0.00 0.00 0.00 3.01
1989 2103 5.211973 AGAGATTCCAGCCACTATGAACTA 58.788 41.667 0.00 0.00 0.00 2.24
1990 2104 5.843421 AGAGATTCCAGCCACTATGAACTAT 59.157 40.000 0.00 0.00 0.00 2.12
1991 2105 7.013220 AGAGATTCCAGCCACTATGAACTATA 58.987 38.462 0.00 0.00 0.00 1.31
1992 2106 7.677745 AGAGATTCCAGCCACTATGAACTATAT 59.322 37.037 0.00 0.00 0.00 0.86
1993 2107 8.901472 AGATTCCAGCCACTATGAACTATATA 57.099 34.615 0.00 0.00 0.00 0.86
1994 2108 8.754080 AGATTCCAGCCACTATGAACTATATAC 58.246 37.037 0.00 0.00 0.00 1.47
1995 2109 6.510879 TCCAGCCACTATGAACTATATACG 57.489 41.667 0.00 0.00 0.00 3.06
1996 2110 6.243148 TCCAGCCACTATGAACTATATACGA 58.757 40.000 0.00 0.00 0.00 3.43
1997 2111 6.717997 TCCAGCCACTATGAACTATATACGAA 59.282 38.462 0.00 0.00 0.00 3.85
1998 2112 7.231925 TCCAGCCACTATGAACTATATACGAAA 59.768 37.037 0.00 0.00 0.00 3.46
1999 2113 7.328737 CCAGCCACTATGAACTATATACGAAAC 59.671 40.741 0.00 0.00 0.00 2.78
2000 2114 7.865889 CAGCCACTATGAACTATATACGAAACA 59.134 37.037 0.00 0.00 0.00 2.83
2001 2115 8.418662 AGCCACTATGAACTATATACGAAACAA 58.581 33.333 0.00 0.00 0.00 2.83
2002 2116 9.037737 GCCACTATGAACTATATACGAAACAAA 57.962 33.333 0.00 0.00 0.00 2.83
2018 2132 8.728088 ACGAAACAAAATGAATGAATCTACAC 57.272 30.769 0.00 0.00 0.00 2.90
2019 2133 8.567948 ACGAAACAAAATGAATGAATCTACACT 58.432 29.630 0.00 0.00 0.00 3.55
2020 2134 9.055248 CGAAACAAAATGAATGAATCTACACTC 57.945 33.333 0.00 0.00 0.00 3.51
2061 2175 6.718522 TGTTCGTATATGGTTCATAGTGGA 57.281 37.500 0.00 0.00 29.42 4.02
2062 2176 7.114866 TGTTCGTATATGGTTCATAGTGGAA 57.885 36.000 0.00 0.00 29.42 3.53
2063 2177 7.732025 TGTTCGTATATGGTTCATAGTGGAAT 58.268 34.615 0.00 0.00 29.42 3.01
2064 2178 8.208224 TGTTCGTATATGGTTCATAGTGGAATT 58.792 33.333 0.00 0.00 29.42 2.17
2065 2179 8.709646 GTTCGTATATGGTTCATAGTGGAATTC 58.290 37.037 0.00 0.00 29.42 2.17
2066 2180 7.383687 TCGTATATGGTTCATAGTGGAATTCC 58.616 38.462 18.17 18.17 29.42 3.01
2067 2181 7.234782 TCGTATATGGTTCATAGTGGAATTCCT 59.765 37.037 24.73 8.72 31.38 3.36
2068 2182 8.528643 CGTATATGGTTCATAGTGGAATTCCTA 58.471 37.037 24.73 10.73 31.38 2.94
2069 2183 9.654663 GTATATGGTTCATAGTGGAATTCCTAC 57.345 37.037 24.73 19.38 31.38 3.18
2070 2184 5.018539 TGGTTCATAGTGGAATTCCTACG 57.981 43.478 24.73 9.36 36.82 3.51
2071 2185 4.712829 TGGTTCATAGTGGAATTCCTACGA 59.287 41.667 24.73 16.59 36.82 3.43
2072 2186 5.188163 TGGTTCATAGTGGAATTCCTACGAA 59.812 40.000 24.73 15.97 36.82 3.85
2073 2187 5.753921 GGTTCATAGTGGAATTCCTACGAAG 59.246 44.000 24.73 13.78 36.82 3.79
2074 2188 6.406624 GGTTCATAGTGGAATTCCTACGAAGA 60.407 42.308 24.73 15.51 36.82 2.87
2075 2189 6.145338 TCATAGTGGAATTCCTACGAAGAC 57.855 41.667 24.73 12.70 36.82 3.01
2076 2190 5.892119 TCATAGTGGAATTCCTACGAAGACT 59.108 40.000 24.73 18.68 36.82 3.24
2077 2191 6.380274 TCATAGTGGAATTCCTACGAAGACTT 59.620 38.462 24.73 6.83 36.82 3.01
2078 2192 7.558807 TCATAGTGGAATTCCTACGAAGACTTA 59.441 37.037 24.73 8.59 36.82 2.24
2079 2193 6.793505 AGTGGAATTCCTACGAAGACTTAT 57.206 37.500 24.73 1.07 36.82 1.73
2080 2194 7.893124 AGTGGAATTCCTACGAAGACTTATA 57.107 36.000 24.73 0.00 36.82 0.98
2081 2195 8.480133 AGTGGAATTCCTACGAAGACTTATAT 57.520 34.615 24.73 0.00 36.82 0.86
2082 2196 8.925338 AGTGGAATTCCTACGAAGACTTATATT 58.075 33.333 24.73 0.00 36.82 1.28
2083 2197 9.194271 GTGGAATTCCTACGAAGACTTATATTC 57.806 37.037 24.73 0.00 36.82 1.75
2084 2198 8.920174 TGGAATTCCTACGAAGACTTATATTCA 58.080 33.333 24.73 0.00 36.82 2.57
2085 2199 9.930693 GGAATTCCTACGAAGACTTATATTCAT 57.069 33.333 17.73 0.00 0.00 2.57
2090 2204 9.888878 TCCTACGAAGACTTATATTCATAAACG 57.111 33.333 0.00 0.00 0.00 3.60
2091 2205 9.125906 CCTACGAAGACTTATATTCATAAACGG 57.874 37.037 0.00 0.00 0.00 4.44
2092 2206 7.941795 ACGAAGACTTATATTCATAAACGGG 57.058 36.000 0.00 0.00 0.00 5.28
2093 2207 7.719483 ACGAAGACTTATATTCATAAACGGGA 58.281 34.615 0.00 0.00 0.00 5.14
2094 2208 7.866393 ACGAAGACTTATATTCATAAACGGGAG 59.134 37.037 0.00 0.00 0.00 4.30
2095 2209 7.328737 CGAAGACTTATATTCATAAACGGGAGG 59.671 40.741 0.00 0.00 0.00 4.30
2108 2222 2.100989 ACGGGAGGAGTACATCAGTTC 58.899 52.381 0.00 0.00 0.00 3.01
2161 2278 5.148502 TGGGTTCCTCTAGTATCTCCATTC 58.851 45.833 0.00 0.00 0.00 2.67
2162 2279 4.528987 GGGTTCCTCTAGTATCTCCATTCC 59.471 50.000 0.00 0.00 0.00 3.01
2354 2761 8.321005 GTCAATTTCAAGCAACTTTGACTTAAC 58.679 33.333 6.40 0.00 39.68 2.01
2372 2779 8.434392 TGACTTAACACCAACCTAGAACTTTAT 58.566 33.333 0.00 0.00 0.00 1.40
2374 2781 9.281371 ACTTAACACCAACCTAGAACTTTATTC 57.719 33.333 0.00 0.00 0.00 1.75
2466 2897 1.342174 AGCACCTGCAGGACATTTTTG 59.658 47.619 39.19 24.36 45.16 2.44
2519 2950 4.100084 TGGGCCATGTCGGAGCTG 62.100 66.667 0.00 0.00 36.56 4.24
2556 2987 1.822371 TGCTACATAAGGTGCAGTCGA 59.178 47.619 0.00 0.00 32.38 4.20
2648 3079 4.061131 TCTCCACCTAGTGATCAAGGAA 57.939 45.455 18.52 4.66 35.23 3.36
2690 3121 1.672854 CGCCATTCCTACTCCCACGA 61.673 60.000 0.00 0.00 0.00 4.35
2830 3261 3.074412 GGCCAGAGAGATTCGAAAACAA 58.926 45.455 0.00 0.00 0.00 2.83
2876 3307 2.125633 GAGTTCCTCCCGTTCGGC 60.126 66.667 5.66 0.00 0.00 5.54
3010 3441 5.512060 CCAAAGATATGGACATGACGGAGAT 60.512 44.000 0.00 0.00 43.54 2.75
3021 3452 3.074504 TGACGGAGATTTTCGGTATCG 57.925 47.619 0.00 0.00 39.22 2.92
3034 3465 0.030908 GGTATCGCGGTGAGAAGGAG 59.969 60.000 6.13 0.00 0.00 3.69
3071 3502 0.970427 ACGCAAAATCCCATGTCCCC 60.970 55.000 0.00 0.00 0.00 4.81
3231 4454 5.368145 TGTCTAAATCTCAGTTGCTGTTGT 58.632 37.500 0.00 0.00 32.61 3.32
3333 4556 5.118990 CACGATCTCATCCAATTAGGTTGT 58.881 41.667 0.00 0.00 38.12 3.32
3348 4571 9.919348 CAATTAGGTTGTTGTCAAATGAAAAAG 57.081 29.630 0.00 0.00 35.20 2.27
3349 4572 9.883142 AATTAGGTTGTTGTCAAATGAAAAAGA 57.117 25.926 0.00 0.00 35.20 2.52
3350 4573 8.925161 TTAGGTTGTTGTCAAATGAAAAAGAG 57.075 30.769 0.00 0.00 35.20 2.85
3351 4574 6.935167 AGGTTGTTGTCAAATGAAAAAGAGT 58.065 32.000 0.00 0.00 35.20 3.24
3352 4575 8.062065 AGGTTGTTGTCAAATGAAAAAGAGTA 57.938 30.769 0.00 0.00 35.20 2.59
3353 4576 8.527810 AGGTTGTTGTCAAATGAAAAAGAGTAA 58.472 29.630 0.00 0.00 35.20 2.24
3354 4577 9.145865 GGTTGTTGTCAAATGAAAAAGAGTAAA 57.854 29.630 0.00 0.00 35.20 2.01
3360 4583 9.959749 TGTCAAATGAAAAAGAGTAAATACACC 57.040 29.630 0.00 0.00 0.00 4.16
3361 4584 9.113876 GTCAAATGAAAAAGAGTAAATACACCG 57.886 33.333 0.00 0.00 0.00 4.94
3362 4585 8.293867 TCAAATGAAAAAGAGTAAATACACCGG 58.706 33.333 0.00 0.00 0.00 5.28
3363 4586 7.989416 AATGAAAAAGAGTAAATACACCGGA 57.011 32.000 9.46 0.00 0.00 5.14
3364 4587 7.611213 ATGAAAAAGAGTAAATACACCGGAG 57.389 36.000 9.46 1.26 0.00 4.63
3378 4601 3.625745 CGGAGGTGCCTTAACTTGT 57.374 52.632 0.00 0.00 0.00 3.16
3379 4602 1.892209 CGGAGGTGCCTTAACTTGTT 58.108 50.000 0.00 0.00 0.00 2.83
3380 4603 1.535462 CGGAGGTGCCTTAACTTGTTG 59.465 52.381 0.00 0.00 0.00 3.33
3381 4604 2.808933 CGGAGGTGCCTTAACTTGTTGA 60.809 50.000 0.00 0.00 0.00 3.18
3382 4605 2.814336 GGAGGTGCCTTAACTTGTTGAG 59.186 50.000 0.00 0.00 0.00 3.02
3383 4606 2.226674 GAGGTGCCTTAACTTGTTGAGC 59.773 50.000 0.00 0.07 0.00 4.26
3384 4607 1.953686 GGTGCCTTAACTTGTTGAGCA 59.046 47.619 0.49 2.35 0.00 4.26
3385 4608 2.287608 GGTGCCTTAACTTGTTGAGCAC 60.288 50.000 19.50 19.50 46.33 4.40
3386 4609 1.601903 TGCCTTAACTTGTTGAGCACG 59.398 47.619 0.49 0.00 0.00 5.34
3387 4610 1.069227 GCCTTAACTTGTTGAGCACGG 60.069 52.381 0.49 0.00 0.00 4.94
3388 4611 2.218603 CCTTAACTTGTTGAGCACGGT 58.781 47.619 0.49 0.00 0.00 4.83
3389 4612 2.223377 CCTTAACTTGTTGAGCACGGTC 59.777 50.000 0.49 0.00 0.00 4.79
3390 4613 2.605837 TAACTTGTTGAGCACGGTCA 57.394 45.000 0.00 0.00 0.00 4.02
3391 4614 1.014352 AACTTGTTGAGCACGGTCAC 58.986 50.000 0.00 0.00 0.00 3.67
3392 4615 0.178068 ACTTGTTGAGCACGGTCACT 59.822 50.000 0.00 0.00 0.00 3.41
3393 4616 1.299541 CTTGTTGAGCACGGTCACTT 58.700 50.000 0.00 0.00 0.00 3.16
3394 4617 1.670811 CTTGTTGAGCACGGTCACTTT 59.329 47.619 0.00 0.00 0.00 2.66
3395 4618 1.013596 TGTTGAGCACGGTCACTTTG 58.986 50.000 0.00 0.00 0.00 2.77
3396 4619 1.295792 GTTGAGCACGGTCACTTTGA 58.704 50.000 0.00 0.00 0.00 2.69
3397 4620 1.873591 GTTGAGCACGGTCACTTTGAT 59.126 47.619 0.00 0.00 0.00 2.57
3398 4621 1.511850 TGAGCACGGTCACTTTGATG 58.488 50.000 0.00 0.00 0.00 3.07
3399 4622 0.166814 GAGCACGGTCACTTTGATGC 59.833 55.000 0.00 0.00 31.89 3.91
3400 4623 1.210155 GCACGGTCACTTTGATGCC 59.790 57.895 0.00 0.00 0.00 4.40
3401 4624 1.875963 CACGGTCACTTTGATGCCC 59.124 57.895 0.00 0.00 0.00 5.36
3402 4625 0.888736 CACGGTCACTTTGATGCCCA 60.889 55.000 0.00 0.00 0.00 5.36
3424 4647 6.099341 CCAAAATTGGTGCTATAACTTGTCC 58.901 40.000 3.95 0.00 43.43 4.02
3429 4652 6.553953 TTGGTGCTATAACTTGTCCTATGA 57.446 37.500 0.00 0.00 0.00 2.15
3430 4653 6.161855 TGGTGCTATAACTTGTCCTATGAG 57.838 41.667 0.00 0.00 0.00 2.90
3432 4655 5.070580 GGTGCTATAACTTGTCCTATGAGGT 59.929 44.000 0.00 0.00 36.53 3.85
3435 8504 8.202137 GTGCTATAACTTGTCCTATGAGGTAAA 58.798 37.037 0.00 0.00 36.53 2.01
3457 8526 1.009222 GGTGCCTCCGTACGTATCG 60.009 63.158 15.21 4.59 0.00 2.92
3467 8536 0.307760 GTACGTATCGGGGGTGTACG 59.692 60.000 0.00 2.98 44.78 3.67
3472 8541 0.843309 TATCGGGGGTGTACGTCCTA 59.157 55.000 0.00 0.00 0.00 2.94
3483 8552 3.379445 CGTCCTACCCACGTGGCT 61.379 66.667 29.75 18.89 37.83 4.75
3501 8570 0.883833 CTTTGGCCCACATGTCAGTC 59.116 55.000 0.00 0.00 0.00 3.51
3615 8684 2.019249 CGGATCCCACGTGTTAGTCTA 58.981 52.381 15.65 0.00 0.00 2.59
3619 8688 5.562307 CGGATCCCACGTGTTAGTCTATTAG 60.562 48.000 15.65 0.00 0.00 1.73
3648 8717 1.388547 AAAACAAACTGCCTCGCTGA 58.611 45.000 0.00 0.00 0.00 4.26
3651 8720 0.035317 ACAAACTGCCTCGCTGATGA 59.965 50.000 0.00 0.00 0.00 2.92
3653 8722 1.023513 AAACTGCCTCGCTGATGAGC 61.024 55.000 0.00 0.00 42.37 4.26
3656 8725 1.152989 CTGCCTCGCTGATGAGCTTC 61.153 60.000 1.81 0.00 43.77 3.86
3661 8730 2.159599 CCTCGCTGATGAGCTTCAAAAC 60.160 50.000 1.81 0.00 43.77 2.43
3664 8733 2.481568 CGCTGATGAGCTTCAAAACTGA 59.518 45.455 1.81 0.00 43.77 3.41
3683 8752 2.169769 TGAGACGTCCAGGTTCAAAACT 59.830 45.455 13.01 0.00 0.00 2.66
3688 8757 2.034558 CGTCCAGGTTCAAAACTTGCAT 59.965 45.455 0.00 0.00 37.18 3.96
3698 8767 0.890683 AAACTTGCATGCTAGCCACC 59.109 50.000 25.99 0.18 0.00 4.61
3699 8768 0.251297 AACTTGCATGCTAGCCACCA 60.251 50.000 25.99 3.12 0.00 4.17
3713 8782 2.540265 CCACCAGGCAGATGACTATC 57.460 55.000 0.00 0.00 0.00 2.08
3721 8790 5.335269 CCAGGCAGATGACTATCGTAAGTAG 60.335 48.000 0.00 0.00 38.38 2.57
3722 8791 5.239744 CAGGCAGATGACTATCGTAAGTAGT 59.760 44.000 0.00 0.00 38.38 2.73
3725 8794 6.204301 GGCAGATGACTATCGTAAGTAGTACA 59.796 42.308 2.52 0.00 38.38 2.90
3726 8795 7.255035 GGCAGATGACTATCGTAAGTAGTACAA 60.255 40.741 2.52 0.00 38.38 2.41
3729 8798 8.828644 AGATGACTATCGTAAGTAGTACAACTG 58.171 37.037 2.52 0.00 38.38 3.16
3730 8799 6.779117 TGACTATCGTAAGTAGTACAACTGC 58.221 40.000 2.52 0.00 32.77 4.40
3731 8800 6.596888 TGACTATCGTAAGTAGTACAACTGCT 59.403 38.462 2.52 0.00 43.08 4.24
3732 8801 7.765819 TGACTATCGTAAGTAGTACAACTGCTA 59.234 37.037 2.52 0.00 40.32 3.49
3745 8814 3.072476 ACAACTGCTAAGCTGGTTTCCTA 59.928 43.478 0.00 0.00 0.00 2.94
3746 8815 4.263506 ACAACTGCTAAGCTGGTTTCCTAT 60.264 41.667 0.00 0.00 0.00 2.57
3747 8816 5.045869 ACAACTGCTAAGCTGGTTTCCTATA 60.046 40.000 0.00 0.00 0.00 1.31
3748 8817 5.896073 ACTGCTAAGCTGGTTTCCTATAT 57.104 39.130 0.00 0.00 0.00 0.86
3749 8818 6.996180 ACTGCTAAGCTGGTTTCCTATATA 57.004 37.500 0.00 0.00 0.00 0.86
3750 8819 6.998802 ACTGCTAAGCTGGTTTCCTATATAG 58.001 40.000 2.46 2.46 0.00 1.31
3751 8820 6.782988 ACTGCTAAGCTGGTTTCCTATATAGA 59.217 38.462 11.53 0.00 0.00 1.98
3752 8821 7.456269 ACTGCTAAGCTGGTTTCCTATATAGAT 59.544 37.037 11.53 0.00 0.00 1.98
3753 8822 7.841956 TGCTAAGCTGGTTTCCTATATAGATC 58.158 38.462 11.53 0.00 0.00 2.75
3754 8823 7.454694 TGCTAAGCTGGTTTCCTATATAGATCA 59.545 37.037 11.53 0.00 0.00 2.92
3755 8824 8.314751 GCTAAGCTGGTTTCCTATATAGATCAA 58.685 37.037 11.53 0.00 0.00 2.57
3758 8827 9.732130 AAGCTGGTTTCCTATATAGATCAATTC 57.268 33.333 11.53 0.00 0.00 2.17
3759 8828 9.110382 AGCTGGTTTCCTATATAGATCAATTCT 57.890 33.333 11.53 0.00 38.57 2.40
3775 8844 9.656323 AGATCAATTCTACCTATAGTACACCAA 57.344 33.333 0.00 0.00 30.96 3.67
3778 8847 9.263446 TCAATTCTACCTATAGTACACCAAAGT 57.737 33.333 0.00 0.00 0.00 2.66
3788 8857 3.036431 CACCAAAGTGGAGTTCCCC 57.964 57.895 0.18 0.00 40.96 4.81
3789 8858 0.184933 CACCAAAGTGGAGTTCCCCA 59.815 55.000 0.18 0.00 40.96 4.96
3790 8859 0.930726 ACCAAAGTGGAGTTCCCCAA 59.069 50.000 0.18 0.00 40.96 4.12
3791 8860 1.289530 ACCAAAGTGGAGTTCCCCAAA 59.710 47.619 0.18 0.00 40.96 3.28
3792 8861 2.292587 ACCAAAGTGGAGTTCCCCAAAA 60.293 45.455 0.18 0.00 40.96 2.44
3793 8862 2.972021 CCAAAGTGGAGTTCCCCAAAAT 59.028 45.455 0.00 0.00 40.96 1.82
3794 8863 3.244181 CCAAAGTGGAGTTCCCCAAAATG 60.244 47.826 0.00 0.00 40.96 2.32
3795 8864 2.309136 AGTGGAGTTCCCCAAAATGG 57.691 50.000 0.00 0.00 38.06 3.16
3796 8865 1.503347 AGTGGAGTTCCCCAAAATGGT 59.497 47.619 0.00 0.00 38.06 3.55
3797 8866 1.618343 GTGGAGTTCCCCAAAATGGTG 59.382 52.381 0.00 0.00 38.06 4.17
3798 8867 0.608130 GGAGTTCCCCAAAATGGTGC 59.392 55.000 0.00 0.00 35.17 5.01
3799 8868 0.608130 GAGTTCCCCAAAATGGTGCC 59.392 55.000 0.00 0.00 35.17 5.01
3800 8869 0.835971 AGTTCCCCAAAATGGTGCCC 60.836 55.000 0.00 0.00 35.17 5.36
3801 8870 1.910772 TTCCCCAAAATGGTGCCCG 60.911 57.895 0.00 0.00 35.17 6.13
3802 8871 2.283532 CCCCAAAATGGTGCCCGA 60.284 61.111 0.00 0.00 35.17 5.14
3803 8872 2.645192 CCCCAAAATGGTGCCCGAC 61.645 63.158 0.00 0.00 35.17 4.79
3804 8873 2.566010 CCAAAATGGTGCCCGACG 59.434 61.111 0.00 0.00 31.35 5.12
3805 8874 2.265182 CCAAAATGGTGCCCGACGT 61.265 57.895 0.00 0.00 31.35 4.34
3806 8875 1.657556 CAAAATGGTGCCCGACGTT 59.342 52.632 0.00 0.00 0.00 3.99
3807 8876 0.386731 CAAAATGGTGCCCGACGTTC 60.387 55.000 0.00 0.00 0.00 3.95
3808 8877 1.520600 AAAATGGTGCCCGACGTTCC 61.521 55.000 0.00 0.00 0.00 3.62
3809 8878 3.912745 AATGGTGCCCGACGTTCCC 62.913 63.158 0.00 0.00 0.00 3.97
3812 8881 4.324991 GTGCCCGACGTTCCCCTT 62.325 66.667 0.00 0.00 0.00 3.95
3813 8882 4.323477 TGCCCGACGTTCCCCTTG 62.323 66.667 0.00 0.00 0.00 3.61
3815 8884 3.633116 CCCGACGTTCCCCTTGGT 61.633 66.667 0.00 0.00 0.00 3.67
3816 8885 2.047560 CCGACGTTCCCCTTGGTC 60.048 66.667 0.00 0.00 0.00 4.02
3817 8886 2.431942 CGACGTTCCCCTTGGTCG 60.432 66.667 0.00 0.00 44.92 4.79
3818 8887 2.741211 GACGTTCCCCTTGGTCGC 60.741 66.667 0.00 0.00 35.01 5.19
3819 8888 3.236003 GACGTTCCCCTTGGTCGCT 62.236 63.158 0.00 0.00 35.01 4.93
3820 8889 2.434359 CGTTCCCCTTGGTCGCTC 60.434 66.667 0.00 0.00 0.00 5.03
3821 8890 2.046217 GTTCCCCTTGGTCGCTCC 60.046 66.667 0.00 0.00 0.00 4.70
3822 8891 3.327404 TTCCCCTTGGTCGCTCCC 61.327 66.667 0.00 0.00 34.77 4.30
3851 8920 4.554036 GGGAGCAAGCCCTAGCCG 62.554 72.222 2.34 0.00 45.12 5.52
3852 8921 3.787001 GGAGCAAGCCCTAGCCGT 61.787 66.667 0.00 0.00 41.25 5.68
3853 8922 2.202946 GAGCAAGCCCTAGCCGTC 60.203 66.667 0.00 0.00 41.25 4.79
3854 8923 4.148825 AGCAAGCCCTAGCCGTCG 62.149 66.667 0.00 0.00 41.25 5.12
3860 8929 3.905678 CCCTAGCCGTCGCCAGAG 61.906 72.222 0.00 0.00 34.57 3.35
3861 8930 4.577246 CCTAGCCGTCGCCAGAGC 62.577 72.222 0.00 0.00 34.57 4.09
3862 8931 4.577246 CTAGCCGTCGCCAGAGCC 62.577 72.222 0.00 0.00 34.57 4.70
3866 8935 4.457496 CCGTCGCCAGAGCCACAT 62.457 66.667 0.00 0.00 34.57 3.21
3867 8936 3.190849 CGTCGCCAGAGCCACATG 61.191 66.667 0.00 0.00 34.57 3.21
3868 8937 3.503363 GTCGCCAGAGCCACATGC 61.503 66.667 0.00 0.00 41.71 4.06
3869 8938 4.783621 TCGCCAGAGCCACATGCC 62.784 66.667 0.00 0.00 42.71 4.40
3904 8973 3.834799 CCACCGCCGGTAGGAGTC 61.835 72.222 22.14 0.00 41.02 3.36
3905 8974 3.066190 CACCGCCGGTAGGAGTCA 61.066 66.667 22.14 0.00 41.02 3.41
3906 8975 2.043248 ACCGCCGGTAGGAGTCAT 60.043 61.111 22.14 0.00 41.02 3.06
3907 8976 1.684734 ACCGCCGGTAGGAGTCATT 60.685 57.895 22.14 0.00 41.02 2.57
3908 8977 1.227263 CCGCCGGTAGGAGTCATTG 60.227 63.158 12.01 0.00 41.02 2.82
3909 8978 1.672854 CCGCCGGTAGGAGTCATTGA 61.673 60.000 12.01 0.00 41.02 2.57
3910 8979 0.249073 CGCCGGTAGGAGTCATTGAG 60.249 60.000 1.90 0.00 41.02 3.02
3911 8980 0.530870 GCCGGTAGGAGTCATTGAGC 60.531 60.000 1.90 0.00 41.02 4.26
3912 8981 0.249073 CCGGTAGGAGTCATTGAGCG 60.249 60.000 0.00 0.00 41.02 5.03
3913 8982 0.738975 CGGTAGGAGTCATTGAGCGA 59.261 55.000 0.00 0.00 33.07 4.93
3914 8983 1.134367 CGGTAGGAGTCATTGAGCGAA 59.866 52.381 0.00 0.00 33.07 4.70
3915 8984 2.796383 CGGTAGGAGTCATTGAGCGAAG 60.796 54.545 0.00 0.00 33.07 3.79
3952 9021 4.570874 GCGGGGCCATCTTCCTCC 62.571 72.222 4.39 0.00 0.00 4.30
3953 9022 2.770048 CGGGGCCATCTTCCTCCT 60.770 66.667 4.39 0.00 0.00 3.69
3954 9023 2.812619 CGGGGCCATCTTCCTCCTC 61.813 68.421 4.39 0.00 0.00 3.71
3955 9024 2.456443 GGGGCCATCTTCCTCCTCC 61.456 68.421 4.39 0.00 0.00 4.30
3956 9025 1.385206 GGGCCATCTTCCTCCTCCT 60.385 63.158 4.39 0.00 0.00 3.69
3957 9026 1.704007 GGGCCATCTTCCTCCTCCTG 61.704 65.000 4.39 0.00 0.00 3.86
3958 9027 1.704007 GGCCATCTTCCTCCTCCTGG 61.704 65.000 0.00 0.00 0.00 4.45
3959 9028 1.704007 GCCATCTTCCTCCTCCTGGG 61.704 65.000 0.00 0.00 0.00 4.45
3960 9029 1.704007 CCATCTTCCTCCTCCTGGGC 61.704 65.000 0.00 0.00 34.39 5.36
3961 9030 1.764054 ATCTTCCTCCTCCTGGGCG 60.764 63.158 0.00 0.00 34.39 6.13
3962 9031 2.243774 ATCTTCCTCCTCCTGGGCGA 62.244 60.000 0.00 0.00 34.39 5.54
3963 9032 2.364317 TTCCTCCTCCTGGGCGAG 60.364 66.667 0.00 0.00 34.39 5.03
3984 9053 3.726517 CGCAGGCCGGTCACTTTG 61.727 66.667 9.71 0.00 0.00 2.77
3985 9054 3.365265 GCAGGCCGGTCACTTTGG 61.365 66.667 9.71 0.00 0.00 3.28
3986 9055 2.672996 CAGGCCGGTCACTTTGGG 60.673 66.667 9.71 0.00 0.00 4.12
3987 9056 3.966543 AGGCCGGTCACTTTGGGG 61.967 66.667 9.71 0.00 0.00 4.96
4002 9071 2.107141 GGGGGATTCTGACTCGCG 59.893 66.667 0.00 0.00 0.00 5.87
4003 9072 2.107141 GGGGATTCTGACTCGCGG 59.893 66.667 6.13 0.00 0.00 6.46
4004 9073 2.722201 GGGGATTCTGACTCGCGGT 61.722 63.158 6.13 2.39 0.00 5.68
4005 9074 1.227002 GGGATTCTGACTCGCGGTC 60.227 63.158 17.43 17.43 44.70 4.79
4012 9081 2.101770 GACTCGCGGTCGGTTAGG 59.898 66.667 6.13 0.00 35.07 2.69
4013 9082 3.407046 GACTCGCGGTCGGTTAGGG 62.407 68.421 6.13 0.00 35.07 3.53
4014 9083 4.867599 CTCGCGGTCGGTTAGGGC 62.868 72.222 6.13 0.00 36.13 5.19
4037 9106 4.803426 GACGAGGCTGCAGGACGG 62.803 72.222 17.12 0.00 0.00 4.79
4077 9146 3.393360 GCTGGTGTAGGCAGGAGT 58.607 61.111 0.00 0.00 0.00 3.85
4078 9147 1.078848 GCTGGTGTAGGCAGGAGTG 60.079 63.158 0.00 0.00 0.00 3.51
4079 9148 1.599047 CTGGTGTAGGCAGGAGTGG 59.401 63.158 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 210 2.291217 ACAAAATGAGAGGAAGAGGGGC 60.291 50.000 0.00 0.00 0.00 5.80
188 232 6.337472 AGGGGAGGTGTTTATATAGTCTAGGA 59.663 42.308 0.00 0.00 0.00 2.94
438 483 6.824305 AGGTACATGAACAATCAAAAGGAG 57.176 37.500 0.00 0.00 39.49 3.69
442 487 6.322456 TCCACAAGGTACATGAACAATCAAAA 59.678 34.615 0.00 0.00 36.14 2.44
501 546 3.561725 GGAACACTCAAGAACAAGTCCAG 59.438 47.826 0.00 0.00 0.00 3.86
577 623 4.870991 GGAACCCTAAGTGAAGATCTTTCG 59.129 45.833 9.87 0.00 0.00 3.46
615 661 3.590466 AAGCCCCATCACAGTGGCC 62.590 63.158 0.00 0.00 45.14 5.36
616 662 1.187567 AAAAGCCCCATCACAGTGGC 61.188 55.000 0.00 0.00 44.35 5.01
617 663 1.341080 AAAAAGCCCCATCACAGTGG 58.659 50.000 0.00 0.00 39.05 4.00
655 701 9.647797 ATCGACAAAATGTACAACTAGACATTA 57.352 29.630 0.00 0.00 43.73 1.90
658 704 6.926826 ACATCGACAAAATGTACAACTAGACA 59.073 34.615 0.00 0.00 35.62 3.41
666 712 5.703592 AGCCTTTACATCGACAAAATGTACA 59.296 36.000 0.00 0.00 38.87 2.90
668 714 5.123186 CCAGCCTTTACATCGACAAAATGTA 59.877 40.000 0.00 0.00 38.31 2.29
676 722 2.093869 TGTACCCAGCCTTTACATCGAC 60.094 50.000 0.00 0.00 0.00 4.20
678 724 2.684001 TGTACCCAGCCTTTACATCG 57.316 50.000 0.00 0.00 0.00 3.84
679 725 4.947388 TCAATTGTACCCAGCCTTTACATC 59.053 41.667 5.13 0.00 0.00 3.06
685 731 5.653255 AGATATCAATTGTACCCAGCCTT 57.347 39.130 5.13 0.00 0.00 4.35
738 784 6.528072 CGCTCCCTCACTAAATTTCATTTTTC 59.472 38.462 0.00 0.00 33.82 2.29
739 785 6.208599 TCGCTCCCTCACTAAATTTCATTTTT 59.791 34.615 0.00 0.00 33.82 1.94
742 788 4.843728 TCGCTCCCTCACTAAATTTCATT 58.156 39.130 0.00 0.00 0.00 2.57
744 790 3.973206 TCGCTCCCTCACTAAATTTCA 57.027 42.857 0.00 0.00 0.00 2.69
751 797 1.880894 CACGTTCGCTCCCTCACTA 59.119 57.895 0.00 0.00 0.00 2.74
806 852 3.501349 TGGGCATAGATGGAGTAGAGTC 58.499 50.000 0.00 0.00 0.00 3.36
820 866 3.892588 TCGTGTACATACAGATGGGCATA 59.107 43.478 0.00 0.00 37.39 3.14
858 904 1.078709 CTGCACGTGAATTGGTCGAT 58.921 50.000 22.23 0.00 0.00 3.59
894 963 2.753247 ACTGGTAGGGTGAAGAGATCC 58.247 52.381 0.00 0.00 0.00 3.36
968 1038 1.648720 GCTGCAGCTGACGAACAAA 59.351 52.632 31.33 0.00 38.21 2.83
993 1072 5.505286 GCCGTGAAGTCTATCATTTTGATG 58.495 41.667 0.30 0.00 37.70 3.07
995 1074 3.616821 CGCCGTGAAGTCTATCATTTTGA 59.383 43.478 0.00 0.00 0.00 2.69
1025 1113 0.458260 GAGGAGGACGAAGAAGAGGC 59.542 60.000 0.00 0.00 0.00 4.70
1651 1757 1.870055 TACAGGTCGGCGAGGTTGAC 61.870 60.000 11.20 0.00 0.00 3.18
1827 1933 0.320247 CGTCCTTCTGCAGCTTGAGT 60.320 55.000 9.47 0.00 0.00 3.41
1857 1963 3.007940 TCATCTCGGTGGTGAGTTCAAAT 59.992 43.478 0.00 0.00 37.28 2.32
1910 2024 6.986817 AGTATAAACGATGGTTGAGGAATGAG 59.013 38.462 0.00 0.00 36.25 2.90
1927 2041 9.278734 GTACAGAACCGTACTTACAGTATAAAC 57.721 37.037 0.00 0.00 38.96 2.01
1941 2055 4.910195 TGAGGAAGTAGTACAGAACCGTA 58.090 43.478 2.52 0.00 0.00 4.02
1955 2069 4.331108 GCTGGAATCTCTTTTGAGGAAGT 58.669 43.478 0.00 0.00 46.22 3.01
1956 2070 3.693578 GGCTGGAATCTCTTTTGAGGAAG 59.306 47.826 0.00 0.00 46.22 3.46
1957 2071 3.074390 TGGCTGGAATCTCTTTTGAGGAA 59.926 43.478 0.00 0.00 46.22 3.36
1959 2073 2.751806 GTGGCTGGAATCTCTTTTGAGG 59.248 50.000 0.00 0.00 46.22 3.86
1961 2075 3.795688 AGTGGCTGGAATCTCTTTTGA 57.204 42.857 0.00 0.00 0.00 2.69
1963 2077 5.441718 TCATAGTGGCTGGAATCTCTTTT 57.558 39.130 0.00 0.00 0.00 2.27
1964 2078 5.045286 AGTTCATAGTGGCTGGAATCTCTTT 60.045 40.000 0.00 0.00 0.00 2.52
1965 2079 4.472833 AGTTCATAGTGGCTGGAATCTCTT 59.527 41.667 0.00 0.00 0.00 2.85
1966 2080 4.036518 AGTTCATAGTGGCTGGAATCTCT 58.963 43.478 0.00 0.00 0.00 3.10
1967 2081 4.414337 AGTTCATAGTGGCTGGAATCTC 57.586 45.455 0.00 0.00 0.00 2.75
1968 2082 7.805083 ATATAGTTCATAGTGGCTGGAATCT 57.195 36.000 0.00 0.00 0.00 2.40
1969 2083 7.702772 CGTATATAGTTCATAGTGGCTGGAATC 59.297 40.741 0.00 0.00 0.00 2.52
1970 2084 7.396339 TCGTATATAGTTCATAGTGGCTGGAAT 59.604 37.037 0.00 0.00 0.00 3.01
1971 2085 6.717997 TCGTATATAGTTCATAGTGGCTGGAA 59.282 38.462 0.00 0.00 0.00 3.53
1972 2086 6.243148 TCGTATATAGTTCATAGTGGCTGGA 58.757 40.000 0.00 0.00 0.00 3.86
1973 2087 6.510879 TCGTATATAGTTCATAGTGGCTGG 57.489 41.667 0.00 0.00 0.00 4.85
1974 2088 7.865889 TGTTTCGTATATAGTTCATAGTGGCTG 59.134 37.037 0.00 0.00 0.00 4.85
1975 2089 7.948357 TGTTTCGTATATAGTTCATAGTGGCT 58.052 34.615 0.00 0.00 0.00 4.75
1976 2090 8.583810 TTGTTTCGTATATAGTTCATAGTGGC 57.416 34.615 0.00 0.00 0.00 5.01
1992 2106 9.820229 GTGTAGATTCATTCATTTTGTTTCGTA 57.180 29.630 0.00 0.00 0.00 3.43
1993 2107 8.567948 AGTGTAGATTCATTCATTTTGTTTCGT 58.432 29.630 0.00 0.00 0.00 3.85
1994 2108 8.955061 AGTGTAGATTCATTCATTTTGTTTCG 57.045 30.769 0.00 0.00 0.00 3.46
2035 2149 9.031537 TCCACTATGAACCATATACGAACATAT 57.968 33.333 0.00 0.00 0.00 1.78
2036 2150 8.411991 TCCACTATGAACCATATACGAACATA 57.588 34.615 0.00 0.00 0.00 2.29
2037 2151 7.297936 TCCACTATGAACCATATACGAACAT 57.702 36.000 0.00 0.00 0.00 2.71
2038 2152 6.718522 TCCACTATGAACCATATACGAACA 57.281 37.500 0.00 0.00 0.00 3.18
2039 2153 8.603242 AATTCCACTATGAACCATATACGAAC 57.397 34.615 0.00 0.00 0.00 3.95
2040 2154 7.876068 GGAATTCCACTATGAACCATATACGAA 59.124 37.037 20.04 0.00 35.64 3.85
2041 2155 7.234782 AGGAATTCCACTATGAACCATATACGA 59.765 37.037 26.22 0.00 38.89 3.43
2042 2156 7.386851 AGGAATTCCACTATGAACCATATACG 58.613 38.462 26.22 0.00 38.89 3.06
2043 2157 9.654663 GTAGGAATTCCACTATGAACCATATAC 57.345 37.037 26.22 10.48 38.89 1.47
2044 2158 8.528643 CGTAGGAATTCCACTATGAACCATATA 58.471 37.037 26.22 1.93 38.89 0.86
2045 2159 7.234782 TCGTAGGAATTCCACTATGAACCATAT 59.765 37.037 26.22 2.92 38.89 1.78
2046 2160 6.551975 TCGTAGGAATTCCACTATGAACCATA 59.448 38.462 26.22 2.57 38.89 2.74
2047 2161 5.365605 TCGTAGGAATTCCACTATGAACCAT 59.634 40.000 26.22 3.57 38.89 3.55
2048 2162 4.712829 TCGTAGGAATTCCACTATGAACCA 59.287 41.667 26.22 0.00 38.89 3.67
2049 2163 5.272283 TCGTAGGAATTCCACTATGAACC 57.728 43.478 26.22 0.00 38.89 3.62
2050 2164 6.476053 GTCTTCGTAGGAATTCCACTATGAAC 59.524 42.308 26.22 12.73 39.18 3.18
2051 2165 6.380274 AGTCTTCGTAGGAATTCCACTATGAA 59.620 38.462 26.22 22.22 40.81 2.57
2052 2166 5.892119 AGTCTTCGTAGGAATTCCACTATGA 59.108 40.000 26.22 17.26 38.89 2.15
2053 2167 6.150396 AGTCTTCGTAGGAATTCCACTATG 57.850 41.667 26.22 15.36 38.89 2.23
2054 2168 6.793505 AAGTCTTCGTAGGAATTCCACTAT 57.206 37.500 26.22 8.21 38.89 2.12
2055 2169 7.893124 ATAAGTCTTCGTAGGAATTCCACTA 57.107 36.000 26.22 8.28 38.89 2.74
2056 2170 6.793505 ATAAGTCTTCGTAGGAATTCCACT 57.206 37.500 26.22 15.32 38.89 4.00
2057 2171 9.194271 GAATATAAGTCTTCGTAGGAATTCCAC 57.806 37.037 26.22 19.10 38.89 4.02
2058 2172 8.920174 TGAATATAAGTCTTCGTAGGAATTCCA 58.080 33.333 26.22 9.69 38.89 3.53
2059 2173 9.930693 ATGAATATAAGTCTTCGTAGGAATTCC 57.069 33.333 17.31 17.31 0.00 3.01
2064 2178 9.888878 CGTTTATGAATATAAGTCTTCGTAGGA 57.111 33.333 0.00 0.00 30.84 2.94
2065 2179 9.125906 CCGTTTATGAATATAAGTCTTCGTAGG 57.874 37.037 0.00 0.00 30.84 3.18
2066 2180 9.125906 CCCGTTTATGAATATAAGTCTTCGTAG 57.874 37.037 0.00 0.00 30.84 3.51
2067 2181 8.849168 TCCCGTTTATGAATATAAGTCTTCGTA 58.151 33.333 0.00 0.00 30.84 3.43
2068 2182 7.719483 TCCCGTTTATGAATATAAGTCTTCGT 58.281 34.615 0.00 0.00 30.84 3.85
2069 2183 7.328737 CCTCCCGTTTATGAATATAAGTCTTCG 59.671 40.741 0.00 0.00 30.84 3.79
2070 2184 8.365647 TCCTCCCGTTTATGAATATAAGTCTTC 58.634 37.037 0.00 0.00 30.84 2.87
2071 2185 8.258850 TCCTCCCGTTTATGAATATAAGTCTT 57.741 34.615 0.00 0.00 30.84 3.01
2072 2186 7.509659 ACTCCTCCCGTTTATGAATATAAGTCT 59.490 37.037 0.00 0.00 30.84 3.24
2073 2187 7.668492 ACTCCTCCCGTTTATGAATATAAGTC 58.332 38.462 0.00 0.00 30.84 3.01
2074 2188 7.613551 ACTCCTCCCGTTTATGAATATAAGT 57.386 36.000 0.00 0.00 30.84 2.24
2075 2189 8.582437 TGTACTCCTCCCGTTTATGAATATAAG 58.418 37.037 0.00 0.00 30.84 1.73
2076 2190 8.481492 TGTACTCCTCCCGTTTATGAATATAA 57.519 34.615 0.00 0.00 0.00 0.98
2077 2191 8.660295 ATGTACTCCTCCCGTTTATGAATATA 57.340 34.615 0.00 0.00 0.00 0.86
2078 2192 6.989155 TGTACTCCTCCCGTTTATGAATAT 57.011 37.500 0.00 0.00 0.00 1.28
2079 2193 6.551975 TGATGTACTCCTCCCGTTTATGAATA 59.448 38.462 0.00 0.00 0.00 1.75
2080 2194 5.365605 TGATGTACTCCTCCCGTTTATGAAT 59.634 40.000 0.00 0.00 0.00 2.57
2081 2195 4.712829 TGATGTACTCCTCCCGTTTATGAA 59.287 41.667 0.00 0.00 0.00 2.57
2082 2196 4.283337 TGATGTACTCCTCCCGTTTATGA 58.717 43.478 0.00 0.00 0.00 2.15
2083 2197 4.099573 ACTGATGTACTCCTCCCGTTTATG 59.900 45.833 0.00 0.00 0.00 1.90
2084 2198 4.287552 ACTGATGTACTCCTCCCGTTTAT 58.712 43.478 0.00 0.00 0.00 1.40
2085 2199 3.705051 ACTGATGTACTCCTCCCGTTTA 58.295 45.455 0.00 0.00 0.00 2.01
2086 2200 2.537143 ACTGATGTACTCCTCCCGTTT 58.463 47.619 0.00 0.00 0.00 3.60
2087 2201 2.233305 ACTGATGTACTCCTCCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
2088 2202 2.100989 GAACTGATGTACTCCTCCCGT 58.899 52.381 0.00 0.00 0.00 5.28
2089 2203 2.100197 TGAACTGATGTACTCCTCCCG 58.900 52.381 0.00 0.00 0.00 5.14
2090 2204 3.706594 TCATGAACTGATGTACTCCTCCC 59.293 47.826 0.00 0.00 0.00 4.30
2091 2205 5.069648 TGATCATGAACTGATGTACTCCTCC 59.930 44.000 0.00 0.00 44.83 4.30
2092 2206 6.154203 TGATCATGAACTGATGTACTCCTC 57.846 41.667 0.00 0.00 44.83 3.71
2093 2207 5.660417 ACTGATCATGAACTGATGTACTCCT 59.340 40.000 15.27 0.00 44.83 3.69
2094 2208 5.752472 CACTGATCATGAACTGATGTACTCC 59.248 44.000 15.27 0.00 44.83 3.85
2095 2209 6.255237 CACACTGATCATGAACTGATGTACTC 59.745 42.308 15.27 0.00 44.83 2.59
2180 2301 7.881775 AACTAGTTTGACATGGAAAAAGTCT 57.118 32.000 1.12 0.00 33.56 3.24
2334 2741 5.184096 TGGTGTTAAGTCAAAGTTGCTTGAA 59.816 36.000 9.52 1.67 37.08 2.69
2354 2761 7.761038 AAAGGAATAAAGTTCTAGGTTGGTG 57.239 36.000 0.00 0.00 0.00 4.17
2372 2779 1.073284 CCTCCTCCGTTCCAAAAGGAA 59.927 52.381 0.00 0.00 37.46 3.36
2374 2781 0.400594 ACCTCCTCCGTTCCAAAAGG 59.599 55.000 0.00 0.00 0.00 3.11
2450 2881 2.074547 CAGCAAAAATGTCCTGCAGG 57.925 50.000 27.87 27.87 38.58 4.85
2466 2897 3.382803 ATGTCTCGCTCCCAGCAGC 62.383 63.158 0.00 0.00 42.58 5.25
2556 2987 1.627834 CTTGAAGGCCTCTCTCACCTT 59.372 52.381 5.23 0.00 46.43 3.50
2648 3079 2.993853 GGGTGCAGCCTTAGAGCT 59.006 61.111 27.63 0.00 46.45 4.09
2675 3106 2.291670 ACACTCTCGTGGGAGTAGGAAT 60.292 50.000 1.31 0.00 43.75 3.01
2676 3107 1.075050 ACACTCTCGTGGGAGTAGGAA 59.925 52.381 1.31 0.00 43.75 3.36
2681 3112 2.627737 GCGACACTCTCGTGGGAGT 61.628 63.158 0.00 0.00 46.14 3.85
2830 3261 1.366366 CCCTTGAAGTCGACGGTGT 59.634 57.895 10.46 0.00 0.00 4.16
2988 3419 5.815233 ATCTCCGTCATGTCCATATCTTT 57.185 39.130 0.00 0.00 0.00 2.52
3010 3441 0.527113 TCTCACCGCGATACCGAAAA 59.473 50.000 8.23 0.00 38.22 2.29
3021 3452 1.827399 TTGGACCTCCTTCTCACCGC 61.827 60.000 0.00 0.00 36.82 5.68
3071 3502 9.866936 CATTAACAAACAAATCAATTTCCACAG 57.133 29.630 0.00 0.00 0.00 3.66
3149 4372 2.355756 CAGCTACGCAAATGTATTGGCT 59.644 45.455 2.76 0.00 34.53 4.75
3358 4581 0.036306 CAAGTTAAGGCACCTCCGGT 59.964 55.000 0.00 0.00 40.77 5.28
3359 4582 0.036306 ACAAGTTAAGGCACCTCCGG 59.964 55.000 0.00 0.00 40.77 5.14
3360 4583 1.535462 CAACAAGTTAAGGCACCTCCG 59.465 52.381 0.00 0.00 40.77 4.63
3361 4584 2.814336 CTCAACAAGTTAAGGCACCTCC 59.186 50.000 0.00 0.00 0.00 4.30
3362 4585 2.226674 GCTCAACAAGTTAAGGCACCTC 59.773 50.000 0.00 0.00 0.00 3.85
3363 4586 2.230660 GCTCAACAAGTTAAGGCACCT 58.769 47.619 0.00 0.00 0.00 4.00
3364 4587 1.953686 TGCTCAACAAGTTAAGGCACC 59.046 47.619 0.00 0.00 0.00 5.01
3365 4588 2.602217 CGTGCTCAACAAGTTAAGGCAC 60.602 50.000 18.29 18.29 43.14 5.01
3366 4589 1.601903 CGTGCTCAACAAGTTAAGGCA 59.398 47.619 0.00 0.00 0.00 4.75
3367 4590 1.069227 CCGTGCTCAACAAGTTAAGGC 60.069 52.381 0.00 0.00 0.00 4.35
3368 4591 2.218603 ACCGTGCTCAACAAGTTAAGG 58.781 47.619 0.00 0.00 0.00 2.69
3369 4592 2.869801 TGACCGTGCTCAACAAGTTAAG 59.130 45.455 0.00 0.00 0.00 1.85
3370 4593 2.610374 GTGACCGTGCTCAACAAGTTAA 59.390 45.455 0.00 0.00 0.00 2.01
3371 4594 2.159014 AGTGACCGTGCTCAACAAGTTA 60.159 45.455 0.00 0.00 0.00 2.24
3372 4595 1.014352 GTGACCGTGCTCAACAAGTT 58.986 50.000 0.00 0.00 0.00 2.66
3373 4596 0.178068 AGTGACCGTGCTCAACAAGT 59.822 50.000 0.00 0.00 0.00 3.16
3374 4597 1.299541 AAGTGACCGTGCTCAACAAG 58.700 50.000 0.00 0.00 0.00 3.16
3375 4598 1.400142 CAAAGTGACCGTGCTCAACAA 59.600 47.619 0.00 0.00 0.00 2.83
3376 4599 1.013596 CAAAGTGACCGTGCTCAACA 58.986 50.000 0.00 0.00 0.00 3.33
3377 4600 1.295792 TCAAAGTGACCGTGCTCAAC 58.704 50.000 0.00 0.00 0.00 3.18
3378 4601 1.872952 CATCAAAGTGACCGTGCTCAA 59.127 47.619 0.00 0.00 0.00 3.02
3379 4602 1.511850 CATCAAAGTGACCGTGCTCA 58.488 50.000 0.00 0.00 0.00 4.26
3380 4603 0.166814 GCATCAAAGTGACCGTGCTC 59.833 55.000 0.00 0.00 29.83 4.26
3381 4604 1.237285 GGCATCAAAGTGACCGTGCT 61.237 55.000 3.20 0.00 32.26 4.40
3382 4605 1.210155 GGCATCAAAGTGACCGTGC 59.790 57.895 0.00 0.00 31.19 5.34
3383 4606 1.875963 GGGCATCAAAGTGACCGTG 59.124 57.895 0.00 0.00 37.58 4.94
3384 4607 4.397348 GGGCATCAAAGTGACCGT 57.603 55.556 0.00 0.00 37.58 4.83
3387 4610 3.747529 CCAATTTTGGGCATCAAAGTGAC 59.252 43.478 1.14 0.00 45.00 3.67
3388 4611 4.005487 CCAATTTTGGGCATCAAAGTGA 57.995 40.909 1.14 0.00 45.00 3.41
3401 4624 6.924111 AGGACAAGTTATAGCACCAATTTTG 58.076 36.000 0.00 0.00 0.00 2.44
3402 4625 8.686334 CATAGGACAAGTTATAGCACCAATTTT 58.314 33.333 0.00 0.00 0.00 1.82
3424 4647 4.557205 GAGGCACCGTATTTACCTCATAG 58.443 47.826 2.54 0.00 45.16 2.23
3456 8525 2.418083 GGTAGGACGTACACCCCCG 61.418 68.421 0.00 0.00 32.62 5.73
3457 8526 2.060383 GGGTAGGACGTACACCCCC 61.060 68.421 21.53 13.74 45.34 5.40
3458 8527 3.621225 GGGTAGGACGTACACCCC 58.379 66.667 21.53 15.98 45.34 4.95
3467 8536 0.953960 CAAAGCCACGTGGGTAGGAC 60.954 60.000 37.32 18.84 46.73 3.85
3483 8552 0.888736 CGACTGACATGTGGGCCAAA 60.889 55.000 8.40 1.64 0.00 3.28
3501 8570 1.568606 CACCTCATCAGCTGTCATCG 58.431 55.000 14.67 2.54 0.00 3.84
3583 8652 0.966179 GGGATCCGTGTTTGGCTTTT 59.034 50.000 5.45 0.00 0.00 2.27
3595 8664 0.815734 AGACTAACACGTGGGATCCG 59.184 55.000 21.57 4.37 0.00 4.18
3598 8667 6.264067 GGTACTAATAGACTAACACGTGGGAT 59.736 42.308 21.57 8.24 0.00 3.85
3609 8678 7.829725 TGTTTTTCTGCGGTACTAATAGACTA 58.170 34.615 0.00 0.00 0.00 2.59
3615 8684 6.435428 CAGTTTGTTTTTCTGCGGTACTAAT 58.565 36.000 0.00 0.00 0.00 1.73
3619 8688 2.787129 GCAGTTTGTTTTTCTGCGGTAC 59.213 45.455 0.00 0.00 43.49 3.34
3648 8717 3.733337 ACGTCTCAGTTTTGAAGCTCAT 58.267 40.909 0.00 0.00 31.69 2.90
3651 8720 2.158957 TGGACGTCTCAGTTTTGAAGCT 60.159 45.455 16.46 0.00 31.69 3.74
3653 8722 2.802816 CCTGGACGTCTCAGTTTTGAAG 59.197 50.000 23.64 9.88 31.69 3.02
3656 8725 2.240493 ACCTGGACGTCTCAGTTTTG 57.760 50.000 23.64 15.03 0.00 2.44
3661 8730 2.526304 TTTGAACCTGGACGTCTCAG 57.474 50.000 20.66 20.66 0.00 3.35
3664 8733 2.943033 CAAGTTTTGAACCTGGACGTCT 59.057 45.455 16.46 0.00 0.00 4.18
3683 8752 1.378911 CCTGGTGGCTAGCATGCAA 60.379 57.895 21.98 0.00 33.18 4.08
3712 8781 5.413833 AGCTTAGCAGTTGTACTACTTACGA 59.586 40.000 7.07 0.00 32.71 3.43
3713 8782 5.512082 CAGCTTAGCAGTTGTACTACTTACG 59.488 44.000 7.07 0.00 32.71 3.18
3721 8790 3.188667 GGAAACCAGCTTAGCAGTTGTAC 59.811 47.826 7.07 5.59 30.07 2.90
3722 8791 3.072476 AGGAAACCAGCTTAGCAGTTGTA 59.928 43.478 7.07 0.00 30.07 2.41
3725 8794 2.959465 AGGAAACCAGCTTAGCAGTT 57.041 45.000 7.07 6.91 0.00 3.16
3726 8795 5.896073 ATATAGGAAACCAGCTTAGCAGT 57.104 39.130 7.07 0.00 0.00 4.40
3729 8798 7.841956 TGATCTATATAGGAAACCAGCTTAGC 58.158 38.462 9.89 0.00 0.00 3.09
3732 8801 9.732130 GAATTGATCTATATAGGAAACCAGCTT 57.268 33.333 9.89 0.93 0.00 3.74
3749 8818 9.656323 TTGGTGTACTATAGGTAGAATTGATCT 57.344 33.333 4.43 0.00 42.48 2.75
3752 8821 9.263446 ACTTTGGTGTACTATAGGTAGAATTGA 57.737 33.333 4.43 0.00 0.00 2.57
3753 8822 9.314321 CACTTTGGTGTACTATAGGTAGAATTG 57.686 37.037 4.43 0.00 38.54 2.32
3754 8823 8.483758 CCACTTTGGTGTACTATAGGTAGAATT 58.516 37.037 4.43 0.00 41.53 2.17
3755 8824 7.842743 TCCACTTTGGTGTACTATAGGTAGAAT 59.157 37.037 4.43 0.00 41.53 2.40
3756 8825 7.184161 TCCACTTTGGTGTACTATAGGTAGAA 58.816 38.462 4.43 0.00 41.53 2.10
3757 8826 6.734532 TCCACTTTGGTGTACTATAGGTAGA 58.265 40.000 4.43 0.00 41.53 2.59
3758 8827 6.606395 ACTCCACTTTGGTGTACTATAGGTAG 59.394 42.308 4.43 0.00 41.91 3.18
3759 8828 6.496743 ACTCCACTTTGGTGTACTATAGGTA 58.503 40.000 4.43 0.00 41.91 3.08
3760 8829 5.339477 ACTCCACTTTGGTGTACTATAGGT 58.661 41.667 4.43 0.00 41.91 3.08
3761 8830 5.934402 ACTCCACTTTGGTGTACTATAGG 57.066 43.478 4.43 0.00 41.91 2.57
3762 8831 6.338937 GGAACTCCACTTTGGTGTACTATAG 58.661 44.000 0.00 0.00 42.79 1.31
3763 8832 5.188359 GGGAACTCCACTTTGGTGTACTATA 59.812 44.000 0.51 0.00 42.79 1.31
3764 8833 4.019591 GGGAACTCCACTTTGGTGTACTAT 60.020 45.833 0.51 0.00 42.79 2.12
3765 8834 3.325716 GGGAACTCCACTTTGGTGTACTA 59.674 47.826 0.51 0.00 42.79 1.82
3766 8835 2.105993 GGGAACTCCACTTTGGTGTACT 59.894 50.000 0.51 0.00 42.79 2.73
3767 8836 2.501261 GGGAACTCCACTTTGGTGTAC 58.499 52.381 0.51 0.00 42.79 2.90
3768 8837 1.422402 GGGGAACTCCACTTTGGTGTA 59.578 52.381 0.51 0.00 42.79 2.90
3769 8838 0.185175 GGGGAACTCCACTTTGGTGT 59.815 55.000 0.00 0.00 45.22 4.16
3770 8839 0.184933 TGGGGAACTCCACTTTGGTG 59.815 55.000 0.00 0.00 41.04 4.17
3771 8840 0.930726 TTGGGGAACTCCACTTTGGT 59.069 50.000 0.00 0.00 41.04 3.67
3772 8841 2.080654 TTTGGGGAACTCCACTTTGG 57.919 50.000 0.00 0.00 41.04 3.28
3773 8842 3.244181 CCATTTTGGGGAACTCCACTTTG 60.244 47.826 0.00 0.00 41.04 2.77
3774 8843 2.972021 CCATTTTGGGGAACTCCACTTT 59.028 45.455 0.00 0.00 41.04 2.66
3775 8844 2.090775 ACCATTTTGGGGAACTCCACTT 60.091 45.455 0.00 0.00 43.37 3.16
3776 8845 1.503347 ACCATTTTGGGGAACTCCACT 59.497 47.619 0.00 0.00 43.37 4.00
3777 8846 1.618343 CACCATTTTGGGGAACTCCAC 59.382 52.381 0.00 0.00 46.22 4.02
3778 8847 2.008242 CACCATTTTGGGGAACTCCA 57.992 50.000 0.00 0.00 46.22 3.86
3779 8848 0.608130 GCACCATTTTGGGGAACTCC 59.392 55.000 0.00 0.00 46.22 3.85
3780 8849 0.608130 GGCACCATTTTGGGGAACTC 59.392 55.000 0.00 0.00 46.22 3.01
3781 8850 2.758648 GGCACCATTTTGGGGAACT 58.241 52.632 0.00 0.00 46.22 3.01
3795 8864 4.324991 AAGGGGAACGTCGGGCAC 62.325 66.667 0.00 0.00 0.00 5.01
3796 8865 4.323477 CAAGGGGAACGTCGGGCA 62.323 66.667 0.00 0.00 0.00 5.36
3798 8867 3.600898 GACCAAGGGGAACGTCGGG 62.601 68.421 0.00 0.00 38.05 5.14
3799 8868 2.047560 GACCAAGGGGAACGTCGG 60.048 66.667 0.00 0.00 38.05 4.79
3800 8869 2.431942 CGACCAAGGGGAACGTCG 60.432 66.667 0.00 0.00 41.70 5.12
3801 8870 2.741211 GCGACCAAGGGGAACGTC 60.741 66.667 0.00 0.00 38.75 4.34
3802 8871 3.236003 GAGCGACCAAGGGGAACGT 62.236 63.158 0.00 0.00 38.75 3.99
3803 8872 2.434359 GAGCGACCAAGGGGAACG 60.434 66.667 0.00 0.00 39.20 3.95
3804 8873 2.046217 GGAGCGACCAAGGGGAAC 60.046 66.667 0.00 0.00 38.79 3.62
3805 8874 3.327404 GGGAGCGACCAAGGGGAA 61.327 66.667 5.45 0.00 41.20 3.97
3834 8903 4.554036 CGGCTAGGGCTTGCTCCC 62.554 72.222 0.00 1.63 46.93 4.30
3835 8904 3.741830 GACGGCTAGGGCTTGCTCC 62.742 68.421 0.00 0.00 38.73 4.70
3836 8905 2.202946 GACGGCTAGGGCTTGCTC 60.203 66.667 0.00 0.00 38.73 4.26
3837 8906 4.148825 CGACGGCTAGGGCTTGCT 62.149 66.667 0.00 0.00 38.73 3.91
3843 8912 3.905678 CTCTGGCGACGGCTAGGG 61.906 72.222 22.70 13.71 46.76 3.53
3844 8913 4.577246 GCTCTGGCGACGGCTAGG 62.577 72.222 22.70 12.26 46.76 3.02
3851 8920 3.503363 GCATGTGGCTCTGGCGAC 61.503 66.667 0.00 0.00 45.35 5.19
3852 8921 4.783621 GGCATGTGGCTCTGGCGA 62.784 66.667 0.00 0.00 44.01 5.54
3887 8956 3.834799 GACTCCTACCGGCGGTGG 61.835 72.222 39.80 36.06 36.19 4.61
3888 8957 1.956629 AATGACTCCTACCGGCGGTG 61.957 60.000 39.80 27.55 36.19 4.94
3889 8958 1.684734 AATGACTCCTACCGGCGGT 60.685 57.895 35.91 35.91 40.16 5.68
3890 8959 1.227263 CAATGACTCCTACCGGCGG 60.227 63.158 27.06 27.06 0.00 6.13
3891 8960 0.249073 CTCAATGACTCCTACCGGCG 60.249 60.000 0.00 0.00 0.00 6.46
3892 8961 0.530870 GCTCAATGACTCCTACCGGC 60.531 60.000 0.00 0.00 0.00 6.13
3893 8962 0.249073 CGCTCAATGACTCCTACCGG 60.249 60.000 0.00 0.00 0.00 5.28
3894 8963 0.738975 TCGCTCAATGACTCCTACCG 59.261 55.000 0.00 0.00 0.00 4.02
3895 8964 2.815478 CTTCGCTCAATGACTCCTACC 58.185 52.381 0.00 0.00 0.00 3.18
3896 8965 2.197577 GCTTCGCTCAATGACTCCTAC 58.802 52.381 0.00 0.00 0.00 3.18
3897 8966 1.137086 GGCTTCGCTCAATGACTCCTA 59.863 52.381 0.00 0.00 0.00 2.94
3898 8967 0.107945 GGCTTCGCTCAATGACTCCT 60.108 55.000 0.00 0.00 0.00 3.69
3899 8968 0.107945 AGGCTTCGCTCAATGACTCC 60.108 55.000 0.00 0.00 0.00 3.85
3900 8969 1.005340 CAGGCTTCGCTCAATGACTC 58.995 55.000 0.00 0.00 0.00 3.36
3901 8970 0.610174 TCAGGCTTCGCTCAATGACT 59.390 50.000 0.00 0.00 0.00 3.41
3902 8971 1.005340 CTCAGGCTTCGCTCAATGAC 58.995 55.000 0.00 0.00 0.00 3.06
3903 8972 0.742281 GCTCAGGCTTCGCTCAATGA 60.742 55.000 0.00 0.00 35.22 2.57
3904 8973 1.720301 GCTCAGGCTTCGCTCAATG 59.280 57.895 0.00 0.00 35.22 2.82
3905 8974 1.812922 CGCTCAGGCTTCGCTCAAT 60.813 57.895 3.64 0.00 36.09 2.57
3906 8975 2.433145 CGCTCAGGCTTCGCTCAA 60.433 61.111 3.64 0.00 36.09 3.02
3907 8976 4.441695 CCGCTCAGGCTTCGCTCA 62.442 66.667 3.64 0.00 36.09 4.26
3935 9004 4.570874 GGAGGAAGATGGCCCCGC 62.571 72.222 0.00 0.00 0.00 6.13
3936 9005 2.770048 AGGAGGAAGATGGCCCCG 60.770 66.667 0.00 0.00 0.00 5.73
3937 9006 2.456443 GGAGGAGGAAGATGGCCCC 61.456 68.421 0.00 0.00 0.00 5.80
3938 9007 1.385206 AGGAGGAGGAAGATGGCCC 60.385 63.158 0.00 0.00 0.00 5.80
3939 9008 1.704007 CCAGGAGGAGGAAGATGGCC 61.704 65.000 0.00 0.00 36.89 5.36
3940 9009 1.704007 CCCAGGAGGAGGAAGATGGC 61.704 65.000 0.00 0.00 38.24 4.40
3941 9010 1.704007 GCCCAGGAGGAGGAAGATGG 61.704 65.000 0.00 0.00 38.24 3.51
3942 9011 1.835693 GCCCAGGAGGAGGAAGATG 59.164 63.158 0.00 0.00 38.24 2.90
3943 9012 1.764054 CGCCCAGGAGGAGGAAGAT 60.764 63.158 0.00 0.00 38.24 2.40
3944 9013 2.364317 CGCCCAGGAGGAGGAAGA 60.364 66.667 0.00 0.00 38.24 2.87
3945 9014 2.364317 TCGCCCAGGAGGAGGAAG 60.364 66.667 0.00 0.00 38.24 3.46
3946 9015 2.364317 CTCGCCCAGGAGGAGGAA 60.364 66.667 0.00 0.00 38.24 3.36
3967 9036 3.726517 CAAAGTGACCGGCCTGCG 61.727 66.667 0.00 0.00 0.00 5.18
3968 9037 3.365265 CCAAAGTGACCGGCCTGC 61.365 66.667 0.00 0.00 0.00 4.85
3969 9038 2.672996 CCCAAAGTGACCGGCCTG 60.673 66.667 0.00 0.00 0.00 4.85
3970 9039 3.966543 CCCCAAAGTGACCGGCCT 61.967 66.667 0.00 0.00 0.00 5.19
3985 9054 2.107141 CGCGAGTCAGAATCCCCC 59.893 66.667 0.00 0.00 0.00 5.40
3986 9055 2.107141 CCGCGAGTCAGAATCCCC 59.893 66.667 8.23 0.00 0.00 4.81
3987 9056 1.227002 GACCGCGAGTCAGAATCCC 60.227 63.158 8.23 0.00 45.55 3.85
3988 9057 1.586564 CGACCGCGAGTCAGAATCC 60.587 63.158 21.91 1.02 46.69 3.01
3989 9058 1.586564 CCGACCGCGAGTCAGAATC 60.587 63.158 21.91 0.00 46.69 2.52
3990 9059 1.874345 AACCGACCGCGAGTCAGAAT 61.874 55.000 21.91 7.82 46.69 2.40
3991 9060 1.236616 TAACCGACCGCGAGTCAGAA 61.237 55.000 21.91 7.30 46.69 3.02
3992 9061 1.642037 CTAACCGACCGCGAGTCAGA 61.642 60.000 21.91 7.64 46.69 3.27
3993 9062 1.226323 CTAACCGACCGCGAGTCAG 60.226 63.158 21.91 15.60 46.69 3.51
3994 9063 2.693762 CCTAACCGACCGCGAGTCA 61.694 63.158 21.91 6.84 46.69 3.41
3995 9064 2.101770 CCTAACCGACCGCGAGTC 59.898 66.667 8.23 12.82 42.54 3.36
3996 9065 3.446570 CCCTAACCGACCGCGAGT 61.447 66.667 8.23 3.14 40.82 4.18
3997 9066 4.867599 GCCCTAACCGACCGCGAG 62.868 72.222 8.23 0.00 40.82 5.03
4020 9089 4.803426 CCGTCCTGCAGCCTCGTC 62.803 72.222 8.66 0.00 0.00 4.20
4057 9126 4.473520 CCTGCCTACACCAGCCCG 62.474 72.222 0.00 0.00 0.00 6.13
4058 9127 3.009115 TCCTGCCTACACCAGCCC 61.009 66.667 0.00 0.00 0.00 5.19
4059 9128 2.294078 ACTCCTGCCTACACCAGCC 61.294 63.158 0.00 0.00 0.00 4.85
4060 9129 1.078848 CACTCCTGCCTACACCAGC 60.079 63.158 0.00 0.00 0.00 4.85
4061 9130 1.599047 CCACTCCTGCCTACACCAG 59.401 63.158 0.00 0.00 0.00 4.00
4062 9131 2.592993 GCCACTCCTGCCTACACCA 61.593 63.158 0.00 0.00 0.00 4.17
4063 9132 2.269241 GCCACTCCTGCCTACACC 59.731 66.667 0.00 0.00 0.00 4.16
4064 9133 2.125512 CGCCACTCCTGCCTACAC 60.126 66.667 0.00 0.00 0.00 2.90
4065 9134 4.082523 GCGCCACTCCTGCCTACA 62.083 66.667 0.00 0.00 0.00 2.74
4066 9135 4.840005 GGCGCCACTCCTGCCTAC 62.840 72.222 24.80 0.00 45.40 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.