Multiple sequence alignment - TraesCS5B01G060100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G060100 chr5B 100.000 6165 0 0 1 6165 67040166 67034002 0.000000e+00 11385.0
1 TraesCS5B01G060100 chr5B 95.132 719 27 4 2161 2878 533945801 533945090 0.000000e+00 1127.0
2 TraesCS5B01G060100 chr5B 83.844 718 102 3 1 704 502459308 502458591 0.000000e+00 671.0
3 TraesCS5B01G060100 chr5B 88.690 336 18 10 2072 2390 30021426 30021758 5.790000e-105 392.0
4 TraesCS5B01G060100 chr5B 90.860 186 17 0 4954 5139 559462346 559462531 3.690000e-62 250.0
5 TraesCS5B01G060100 chr5B 81.377 247 23 11 1049 1282 559457063 559457299 4.910000e-41 180.0
6 TraesCS5B01G060100 chr5B 89.565 115 9 2 2072 2185 395476377 395476265 6.440000e-30 143.0
7 TraesCS5B01G060100 chr5B 90.741 54 4 1 4639 4691 559462067 559462120 3.080000e-08 71.3
8 TraesCS5B01G060100 chr5D 92.314 3396 144 48 2072 5403 63511171 63514513 0.000000e+00 4717.0
9 TraesCS5B01G060100 chr5D 88.281 1408 76 35 717 2076 63509776 63511142 0.000000e+00 1604.0
10 TraesCS5B01G060100 chr5D 94.986 718 28 4 2161 2878 560844781 560844072 0.000000e+00 1120.0
11 TraesCS5B01G060100 chr5D 92.308 364 15 7 5814 6164 63514521 63514884 7.130000e-139 505.0
12 TraesCS5B01G060100 chr5D 90.323 186 18 0 4954 5139 457522859 457523044 1.720000e-60 244.0
13 TraesCS5B01G060100 chr5D 80.567 247 25 13 1049 1282 457517820 457518056 1.060000e-37 169.0
14 TraesCS5B01G060100 chr5D 88.525 61 7 0 4625 4685 457522561 457522621 2.380000e-09 75.0
15 TraesCS5B01G060100 chr5A 92.028 2722 98 44 2711 5390 52856470 52859114 0.000000e+00 3714.0
16 TraesCS5B01G060100 chr5A 86.878 1387 93 37 723 2076 52854419 52855749 0.000000e+00 1471.0
17 TraesCS5B01G060100 chr5A 90.323 713 31 17 2072 2753 52855778 52856483 0.000000e+00 900.0
18 TraesCS5B01G060100 chr5A 98.333 120 2 0 6029 6148 52859619 52859738 1.740000e-50 211.0
19 TraesCS5B01G060100 chr5A 92.199 141 9 1 5814 5954 52859141 52859279 1.360000e-46 198.0
20 TraesCS5B01G060100 chr5A 81.048 248 22 15 1049 1282 575323203 575323439 2.280000e-39 174.0
21 TraesCS5B01G060100 chr7D 95.961 718 21 4 2161 2878 143316777 143316068 0.000000e+00 1158.0
22 TraesCS5B01G060100 chr7D 95.543 718 24 4 2161 2878 143349605 143348896 0.000000e+00 1142.0
23 TraesCS5B01G060100 chr7D 86.938 712 79 2 3 700 474533143 474532432 0.000000e+00 787.0
24 TraesCS5B01G060100 chr7D 86.053 717 85 8 3 704 508341249 508340533 0.000000e+00 756.0
25 TraesCS5B01G060100 chr7B 94.868 721 31 4 2158 2878 585075789 585076503 0.000000e+00 1122.0
26 TraesCS5B01G060100 chr7B 91.086 718 47 9 1 704 425167686 425166972 0.000000e+00 955.0
27 TraesCS5B01G060100 chr7B 81.127 355 53 4 364 704 165114320 165114674 7.870000e-69 272.0
28 TraesCS5B01G060100 chr7B 93.750 80 5 0 1997 2076 135317651 135317572 3.020000e-23 121.0
29 TraesCS5B01G060100 chr7B 93.750 80 5 0 1997 2076 574881627 574881548 3.020000e-23 121.0
30 TraesCS5B01G060100 chr4A 90.808 718 50 5 1 704 676156190 676155475 0.000000e+00 946.0
31 TraesCS5B01G060100 chr4A 83.799 716 99 3 3 704 734248326 734247614 0.000000e+00 664.0
32 TraesCS5B01G060100 chr4A 88.393 336 20 9 2072 2390 675415024 675414691 2.700000e-103 387.0
33 TraesCS5B01G060100 chr4A 88.406 69 4 2 1761 1825 663200206 663200138 5.120000e-11 80.5
34 TraesCS5B01G060100 chr6D 90.542 719 52 4 1 704 385465323 385466040 0.000000e+00 937.0
35 TraesCS5B01G060100 chr3B 86.806 720 79 4 1 704 531397301 531398020 0.000000e+00 789.0
36 TraesCS5B01G060100 chr3B 93.750 80 5 0 1997 2076 710945251 710945172 3.020000e-23 121.0
37 TraesCS5B01G060100 chr4B 86.481 540 72 1 1 539 654262514 654263053 5.320000e-165 592.0
38 TraesCS5B01G060100 chr4B 98.182 55 1 0 2336 2390 459192441 459192495 5.090000e-16 97.1
39 TraesCS5B01G060100 chr4D 95.341 279 9 2 2600 2878 506826947 506826673 2.040000e-119 440.0
40 TraesCS5B01G060100 chr1D 94.425 287 10 2 2600 2883 66589584 66589301 2.640000e-118 436.0
41 TraesCS5B01G060100 chr1D 80.392 153 21 7 5664 5809 438314372 438314522 2.350000e-19 108.0
42 TraesCS5B01G060100 chr7A 86.788 386 37 2 333 704 552767489 552767874 9.560000e-113 418.0
43 TraesCS5B01G060100 chr6B 91.429 105 3 2 2072 2172 105644122 105644020 8.330000e-29 139.0
44 TraesCS5B01G060100 chr6B 95.000 80 4 0 1997 2076 173164113 173164034 6.490000e-25 126.0
45 TraesCS5B01G060100 chr6B 93.976 83 5 0 1994 2076 643475933 643476015 6.490000e-25 126.0
46 TraesCS5B01G060100 chr2B 95.000 80 4 0 1997 2076 118131526 118131447 6.490000e-25 126.0
47 TraesCS5B01G060100 chr2B 93.976 83 5 0 1994 2076 365213249 365213331 6.490000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G060100 chr5B 67034002 67040166 6164 True 11385.000000 11385 100.000000 1 6165 1 chr5B.!!$R1 6164
1 TraesCS5B01G060100 chr5B 533945090 533945801 711 True 1127.000000 1127 95.132000 2161 2878 1 chr5B.!!$R4 717
2 TraesCS5B01G060100 chr5B 502458591 502459308 717 True 671.000000 671 83.844000 1 704 1 chr5B.!!$R3 703
3 TraesCS5B01G060100 chr5D 63509776 63514884 5108 False 2275.333333 4717 90.967667 717 6164 3 chr5D.!!$F2 5447
4 TraesCS5B01G060100 chr5D 560844072 560844781 709 True 1120.000000 1120 94.986000 2161 2878 1 chr5D.!!$R1 717
5 TraesCS5B01G060100 chr5A 52854419 52859738 5319 False 1298.800000 3714 91.952200 723 6148 5 chr5A.!!$F2 5425
6 TraesCS5B01G060100 chr7D 143316068 143316777 709 True 1158.000000 1158 95.961000 2161 2878 1 chr7D.!!$R1 717
7 TraesCS5B01G060100 chr7D 143348896 143349605 709 True 1142.000000 1142 95.543000 2161 2878 1 chr7D.!!$R2 717
8 TraesCS5B01G060100 chr7D 474532432 474533143 711 True 787.000000 787 86.938000 3 700 1 chr7D.!!$R3 697
9 TraesCS5B01G060100 chr7D 508340533 508341249 716 True 756.000000 756 86.053000 3 704 1 chr7D.!!$R4 701
10 TraesCS5B01G060100 chr7B 585075789 585076503 714 False 1122.000000 1122 94.868000 2158 2878 1 chr7B.!!$F2 720
11 TraesCS5B01G060100 chr7B 425166972 425167686 714 True 955.000000 955 91.086000 1 704 1 chr7B.!!$R2 703
12 TraesCS5B01G060100 chr4A 676155475 676156190 715 True 946.000000 946 90.808000 1 704 1 chr4A.!!$R3 703
13 TraesCS5B01G060100 chr4A 734247614 734248326 712 True 664.000000 664 83.799000 3 704 1 chr4A.!!$R4 701
14 TraesCS5B01G060100 chr6D 385465323 385466040 717 False 937.000000 937 90.542000 1 704 1 chr6D.!!$F1 703
15 TraesCS5B01G060100 chr3B 531397301 531398020 719 False 789.000000 789 86.806000 1 704 1 chr3B.!!$F1 703
16 TraesCS5B01G060100 chr4B 654262514 654263053 539 False 592.000000 592 86.481000 1 539 1 chr4B.!!$F2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 699 0.032952 TTGTGACCACGTGACTAGCC 59.967 55.000 19.30 0.0 0.00 3.93 F
1491 1550 0.105862 AATGCCACCTGATCCATGGG 60.106 55.000 13.02 0.0 33.81 4.00 F
1574 1646 1.203758 CCGGCAGGAAAATAACAACCC 59.796 52.381 0.00 0.0 41.02 4.11 F
2951 3133 0.851332 TCTGACCAGGGAGAGAGGGA 60.851 60.000 0.00 0.0 0.00 4.20 F
3541 3763 0.109723 TTAGGAACCACCACACAGGC 59.890 55.000 0.00 0.0 43.14 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1909 0.493639 CAGAGGGGGAGGATGGGATA 59.506 60.000 0.00 0.0 0.00 2.59 R
2698 2847 1.078143 GTCTGCTGGACCATGACCC 60.078 63.158 0.00 0.0 38.93 4.46 R
3537 3759 0.179048 TGGAGAACAGTGTGTGCCTG 60.179 55.000 0.00 0.0 36.01 4.85 R
3943 4166 0.594284 CGCGATCGTCTTTACCTCCC 60.594 60.000 17.81 0.0 0.00 4.30 R
5461 5711 0.172352 TTGGGATGAAAAATCGCCGC 59.828 50.000 0.63 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.751436 GCTCCGCTTTGGGCATGA 60.751 61.111 0.00 0.00 41.91 3.07
113 114 3.123674 GCTTCGGCGTATAGGATGG 57.876 57.895 6.85 0.00 0.00 3.51
163 164 2.414594 GCGGCCATCTGGAAATGC 59.585 61.111 2.24 0.00 37.39 3.56
177 178 0.684153 AAATGCTGGGTGCCGCTATT 60.684 50.000 0.00 0.00 42.00 1.73
187 188 0.464036 TGCCGCTATTCTGTCGGATT 59.536 50.000 3.91 0.00 45.53 3.01
355 356 3.197265 GCATGTGTGGTTTCTTTGCTTT 58.803 40.909 0.00 0.00 0.00 3.51
357 358 4.445385 GCATGTGTGGTTTCTTTGCTTTAG 59.555 41.667 0.00 0.00 0.00 1.85
432 434 4.803426 GTGGTGCGAGGCGAGGAG 62.803 72.222 0.00 0.00 0.00 3.69
468 471 2.098614 TGCAGAAAAGGCTTTGACACA 58.901 42.857 14.19 7.52 0.00 3.72
472 475 3.378112 CAGAAAAGGCTTTGACACAGTGA 59.622 43.478 14.19 0.00 0.00 3.41
614 630 2.028112 TGGAGTGGAGCATGTAGTTGAC 60.028 50.000 0.00 0.00 0.00 3.18
648 664 1.631071 TTGTGTGTGGAGTGGAGGCA 61.631 55.000 0.00 0.00 0.00 4.75
682 699 0.032952 TTGTGACCACGTGACTAGCC 59.967 55.000 19.30 0.00 0.00 3.93
705 723 9.071276 AGCCACAAATCTCTTTTATACATATGG 57.929 33.333 7.80 0.00 0.00 2.74
706 724 7.809806 GCCACAAATCTCTTTTATACATATGGC 59.190 37.037 7.80 0.00 0.00 4.40
707 725 8.849168 CCACAAATCTCTTTTATACATATGGCA 58.151 33.333 7.80 0.00 0.00 4.92
712 730 9.686683 AATCTCTTTTATACATATGGCATACCC 57.313 33.333 9.83 0.00 33.59 3.69
713 731 8.449423 TCTCTTTTATACATATGGCATACCCT 57.551 34.615 9.83 0.00 33.59 4.34
714 732 8.540388 TCTCTTTTATACATATGGCATACCCTC 58.460 37.037 9.83 0.00 33.59 4.30
715 733 7.327975 TCTTTTATACATATGGCATACCCTCG 58.672 38.462 9.83 0.00 33.59 4.63
716 734 6.860790 TTTATACATATGGCATACCCTCGA 57.139 37.500 9.83 0.00 33.59 4.04
717 735 6.860790 TTATACATATGGCATACCCTCGAA 57.139 37.500 9.83 0.00 33.59 3.71
718 736 5.755409 ATACATATGGCATACCCTCGAAA 57.245 39.130 9.83 0.00 33.59 3.46
719 737 4.431416 ACATATGGCATACCCTCGAAAA 57.569 40.909 9.83 0.00 33.59 2.29
720 738 4.787551 ACATATGGCATACCCTCGAAAAA 58.212 39.130 9.83 0.00 33.59 1.94
768 794 9.087871 TGAATTTCCACTCTAATCATCCAAAAA 57.912 29.630 0.00 0.00 0.00 1.94
772 798 5.360714 TCCACTCTAATCATCCAAAAATGCC 59.639 40.000 0.00 0.00 0.00 4.40
773 799 5.127519 CCACTCTAATCATCCAAAAATGCCA 59.872 40.000 0.00 0.00 0.00 4.92
775 801 5.361857 ACTCTAATCATCCAAAAATGCCAGG 59.638 40.000 0.00 0.00 0.00 4.45
779 805 4.970860 TCATCCAAAAATGCCAGGAAAA 57.029 36.364 0.00 0.00 33.17 2.29
795 823 6.405538 CCAGGAAAAAGGCTTGCAAATAATA 58.594 36.000 0.00 0.00 0.00 0.98
813 841 9.301153 CAAATAATAAGACACCAACTTTATGCC 57.699 33.333 0.00 0.00 0.00 4.40
816 844 2.514803 AGACACCAACTTTATGCCCAC 58.485 47.619 0.00 0.00 0.00 4.61
821 849 2.238521 CCAACTTTATGCCCACACACT 58.761 47.619 0.00 0.00 0.00 3.55
822 850 2.627699 CCAACTTTATGCCCACACACTT 59.372 45.455 0.00 0.00 0.00 3.16
823 851 3.823873 CCAACTTTATGCCCACACACTTA 59.176 43.478 0.00 0.00 0.00 2.24
824 852 4.279671 CCAACTTTATGCCCACACACTTAA 59.720 41.667 0.00 0.00 0.00 1.85
826 854 3.824443 ACTTTATGCCCACACACTTAACC 59.176 43.478 0.00 0.00 0.00 2.85
828 856 0.251608 ATGCCCACACACTTAACCCC 60.252 55.000 0.00 0.00 0.00 4.95
829 857 1.357272 TGCCCACACACTTAACCCCT 61.357 55.000 0.00 0.00 0.00 4.79
830 858 0.893727 GCCCACACACTTAACCCCTG 60.894 60.000 0.00 0.00 0.00 4.45
836 864 2.775384 ACACACTTAACCCCTGTCTTCA 59.225 45.455 0.00 0.00 0.00 3.02
851 879 1.393883 TCTTCATCTCGACAGTCGACG 59.606 52.381 21.92 16.80 44.82 5.12
853 881 1.930188 CATCTCGACAGTCGACGCG 60.930 63.158 21.92 12.55 44.82 6.01
855 883 4.736631 CTCGACAGTCGACGCGCA 62.737 66.667 21.92 0.30 44.82 6.09
863 891 4.562485 TCGACGCGCACACACACT 62.562 61.111 5.73 0.00 0.00 3.55
864 892 4.339809 CGACGCGCACACACACTG 62.340 66.667 5.73 0.00 0.00 3.66
865 893 3.261951 GACGCGCACACACACTGT 61.262 61.111 5.73 0.00 0.00 3.55
891 921 2.219449 ATAAAACCGCCCACTCCCCC 62.219 60.000 0.00 0.00 0.00 5.40
900 930 1.152355 CCACTCCCCCAAAAGCCAA 60.152 57.895 0.00 0.00 0.00 4.52
909 939 1.321474 CCAAAAGCCAAGCACTCTCA 58.679 50.000 0.00 0.00 0.00 3.27
941 972 2.035632 CATTACCTCCTCTTCGCTCCT 58.964 52.381 0.00 0.00 0.00 3.69
943 974 0.106619 TACCTCCTCTTCGCTCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
944 975 2.131067 CCTCCTCTTCGCTCCTCCC 61.131 68.421 0.00 0.00 0.00 4.30
1433 1468 4.776435 TTCATCTGTTCATGGCATCCTA 57.224 40.909 0.00 0.00 0.00 2.94
1470 1505 8.827677 ACCAATTAGTAACTGCTTTATCGAATC 58.172 33.333 0.00 0.00 0.00 2.52
1491 1550 0.105862 AATGCCACCTGATCCATGGG 60.106 55.000 13.02 0.00 33.81 4.00
1574 1646 1.203758 CCGGCAGGAAAATAACAACCC 59.796 52.381 0.00 0.00 41.02 4.11
1575 1647 1.889829 CGGCAGGAAAATAACAACCCA 59.110 47.619 0.00 0.00 0.00 4.51
1582 1654 6.484977 GCAGGAAAATAACAACCCATTTTTCA 59.515 34.615 8.24 0.00 37.79 2.69
1584 1656 9.065798 CAGGAAAATAACAACCCATTTTTCAAT 57.934 29.630 8.24 0.00 37.79 2.57
1585 1657 9.283768 AGGAAAATAACAACCCATTTTTCAATC 57.716 29.630 8.24 0.00 37.79 2.67
1586 1658 8.227119 GGAAAATAACAACCCATTTTTCAATCG 58.773 33.333 8.24 0.00 37.79 3.34
1587 1659 8.669946 AAAATAACAACCCATTTTTCAATCGT 57.330 26.923 0.00 0.00 31.88 3.73
1588 1660 7.883229 AATAACAACCCATTTTTCAATCGTC 57.117 32.000 0.00 0.00 0.00 4.20
1589 1661 4.927978 ACAACCCATTTTTCAATCGTCA 57.072 36.364 0.00 0.00 0.00 4.35
1602 1676 5.444663 TCAATCGTCAGATCATCGATCTT 57.555 39.130 15.87 4.57 45.86 2.40
1609 1683 5.334724 CGTCAGATCATCGATCTTGATCAGA 60.335 44.000 25.30 21.88 45.86 3.27
1610 1684 5.858049 GTCAGATCATCGATCTTGATCAGAC 59.142 44.000 26.59 26.59 45.86 3.51
1611 1685 5.048154 TCAGATCATCGATCTTGATCAGACC 60.048 44.000 25.30 9.23 45.86 3.85
1618 1692 4.020218 TCGATCTTGATCAGACCAACCTTT 60.020 41.667 10.69 0.00 32.83 3.11
1674 1750 3.305629 GCAGCGTTTTGAGTAGAGATCAG 59.694 47.826 0.00 0.00 0.00 2.90
1701 1777 5.066968 TGCCGATTAACATTTCTTTTCCC 57.933 39.130 0.00 0.00 0.00 3.97
1828 1904 2.034305 GTCGACGACAGCAGGGTATATT 59.966 50.000 22.66 0.00 32.09 1.28
1837 1913 4.256920 CAGCAGGGTATATTGTGCTATCC 58.743 47.826 5.61 0.00 44.45 2.59
1878 1954 9.683069 GCATTTTTCTTCTTTTAGATGAAGTGA 57.317 29.630 8.26 0.00 38.87 3.41
1904 1980 6.928492 TGATGAACTGCCAATTTCCTTTTTAC 59.072 34.615 0.00 0.00 0.00 2.01
1914 1994 9.278978 GCCAATTTCCTTTTTACTTGGATAAAA 57.721 29.630 3.42 0.00 36.14 1.52
1927 2007 5.656859 ACTTGGATAAAATAAAGGACAGGCC 59.343 40.000 0.00 0.00 0.00 5.19
1931 2015 5.656859 GGATAAAATAAAGGACAGGCCAGTT 59.343 40.000 5.01 0.00 40.02 3.16
2259 2379 2.416678 TGCTTTTGGTTGCAGGCG 59.583 55.556 0.00 0.00 34.84 5.52
2347 2483 6.404734 CCACCCAATAGATGCTAAACAAGAAC 60.405 42.308 0.00 0.00 0.00 3.01
2403 2539 1.239347 CTGGATCATGCCATCTGCTG 58.761 55.000 0.00 0.00 42.00 4.41
2409 2545 4.280174 GGATCATGCCATCTGCTGTAATTT 59.720 41.667 0.00 0.00 42.00 1.82
2598 2747 7.390718 GCCCTTGTGTTTCTTTAGAGAAGATTA 59.609 37.037 0.00 0.00 42.55 1.75
2648 2797 3.609853 AGCAAGTGTGAGTGAACTGAAA 58.390 40.909 0.00 0.00 0.00 2.69
2716 2865 1.078143 GGGTCATGGTCCAGCAGAC 60.078 63.158 11.54 11.54 45.51 3.51
2736 2915 4.693095 AGACGAGATTTTCTTTTCTGAGGC 59.307 41.667 0.00 0.00 0.00 4.70
2786 2966 4.107622 GCCACACAATGATTCAGCAATAC 58.892 43.478 0.00 0.00 0.00 1.89
2942 3124 1.480137 CTCTTGTAGCTCTGACCAGGG 59.520 57.143 0.00 0.00 0.00 4.45
2944 3126 1.480137 CTTGTAGCTCTGACCAGGGAG 59.520 57.143 0.22 0.00 0.00 4.30
2951 3133 0.851332 TCTGACCAGGGAGAGAGGGA 60.851 60.000 0.00 0.00 0.00 4.20
3106 3288 2.113986 GCAACCTGTCCAGTGCCT 59.886 61.111 0.00 0.00 0.00 4.75
3253 3446 5.749462 CCTTTCTCATCCCTAATCAAGTGT 58.251 41.667 0.00 0.00 0.00 3.55
3293 3486 8.281893 GCTTTCTCTTCTAATCTAATGATGCAC 58.718 37.037 0.00 0.00 32.44 4.57
3449 3657 7.898100 TCATCAACTAGATCTATGCCCTAGATT 59.102 37.037 2.11 2.34 45.39 2.40
3450 3658 9.194972 CATCAACTAGATCTATGCCCTAGATTA 57.805 37.037 2.11 3.11 45.39 1.75
3452 3660 9.026121 TCAACTAGATCTATGCCCTAGATTAAC 57.974 37.037 2.11 0.00 45.39 2.01
3453 3661 7.964666 ACTAGATCTATGCCCTAGATTAACC 57.035 40.000 2.11 0.00 45.39 2.85
3454 3662 6.898521 ACTAGATCTATGCCCTAGATTAACCC 59.101 42.308 2.11 0.00 45.39 4.11
3455 3663 5.921530 AGATCTATGCCCTAGATTAACCCT 58.078 41.667 0.00 0.00 45.39 4.34
3456 3664 7.057732 AGATCTATGCCCTAGATTAACCCTA 57.942 40.000 0.00 0.00 45.39 3.53
3537 3759 5.010213 TGCTTTTAATTAGGAACCACCACAC 59.990 40.000 0.00 0.00 42.04 3.82
3538 3760 5.010213 GCTTTTAATTAGGAACCACCACACA 59.990 40.000 0.00 0.00 42.04 3.72
3539 3761 6.642707 TTTTAATTAGGAACCACCACACAG 57.357 37.500 0.00 0.00 42.04 3.66
3540 3762 2.879103 ATTAGGAACCACCACACAGG 57.121 50.000 0.00 0.00 45.67 4.00
3541 3763 0.109723 TTAGGAACCACCACACAGGC 59.890 55.000 0.00 0.00 43.14 4.85
3542 3764 1.057275 TAGGAACCACCACACAGGCA 61.057 55.000 0.00 0.00 43.14 4.75
3543 3765 2.193536 GGAACCACCACACAGGCAC 61.194 63.158 0.00 0.00 43.14 5.01
3544 3766 1.453015 GAACCACCACACAGGCACA 60.453 57.895 0.00 0.00 43.14 4.57
3567 3789 6.377146 ACACACTGTTCTCCAATTAAACAACT 59.623 34.615 0.00 0.00 32.89 3.16
4180 4403 4.665833 ATTCTTGATCACAATGGCCATG 57.334 40.909 21.63 15.80 35.37 3.66
4181 4404 3.369242 TCTTGATCACAATGGCCATGA 57.631 42.857 21.63 15.12 35.37 3.07
4183 4406 3.054213 TCTTGATCACAATGGCCATGAGA 60.054 43.478 21.63 17.57 35.37 3.27
4184 4407 3.369242 TGATCACAATGGCCATGAGAA 57.631 42.857 21.63 6.28 0.00 2.87
4330 4553 0.625316 CATGGGAATGGGAGGTCACA 59.375 55.000 0.00 0.00 0.00 3.58
4567 4796 2.278596 CGTCGAATGATCGCCGGT 60.279 61.111 1.90 0.00 45.68 5.28
4568 4797 2.293627 CGTCGAATGATCGCCGGTC 61.294 63.158 1.90 0.00 45.68 4.79
4672 4901 3.690628 TCGTATCAGTGTACATCAACCGA 59.309 43.478 0.00 0.67 0.00 4.69
4690 4919 0.804933 GAACGGGCGTGGTACATCTC 60.805 60.000 0.00 0.00 44.52 2.75
4697 4926 1.743772 GCGTGGTACATCTCCTTGCAT 60.744 52.381 0.00 0.00 44.52 3.96
4710 4939 4.940046 TCTCCTTGCATTGTTCTTGATCTC 59.060 41.667 0.00 0.00 0.00 2.75
4839 5083 3.760580 AGAAGAGTAAGTGCACAAGCT 57.239 42.857 21.04 12.97 42.74 3.74
4885 5129 2.546778 TGGCGTGCTATAGCTTTGTAC 58.453 47.619 24.61 13.26 42.66 2.90
4948 5192 4.681978 ACTGACGCCGGAGTTGCC 62.682 66.667 13.57 0.00 0.00 4.52
5143 5392 2.771639 CCTCCTCGCCATCGTCGAA 61.772 63.158 0.00 0.00 35.38 3.71
5182 5431 2.954020 GATCGCCGCCGTCATCAAGA 62.954 60.000 0.00 0.00 35.54 3.02
5185 5434 2.185350 CCGCCGTCATCAAGAGCT 59.815 61.111 0.00 0.00 0.00 4.09
5187 5436 2.806856 CGCCGTCATCAAGAGCTGC 61.807 63.158 0.00 0.00 0.00 5.25
5195 5444 2.753009 ATCAAGAGCTGCGCAACCCA 62.753 55.000 13.05 0.00 0.00 4.51
5204 5453 2.774799 GCGCAACCCATGGTGATCC 61.775 63.158 11.73 0.00 35.34 3.36
5390 5640 1.078426 AACCGTGGTAGCCTCATGC 60.078 57.895 0.00 0.00 41.71 4.06
5403 5653 4.529897 AGCCTCATGCATGTTTGATCTAA 58.470 39.130 25.43 2.73 44.83 2.10
5404 5654 4.579340 AGCCTCATGCATGTTTGATCTAAG 59.421 41.667 25.43 12.18 44.83 2.18
5405 5655 4.577693 GCCTCATGCATGTTTGATCTAAGA 59.422 41.667 25.43 1.46 40.77 2.10
5406 5656 5.277876 GCCTCATGCATGTTTGATCTAAGAG 60.278 44.000 25.43 11.00 40.77 2.85
5407 5657 5.277876 CCTCATGCATGTTTGATCTAAGAGC 60.278 44.000 25.43 0.00 0.00 4.09
5408 5658 5.187687 TCATGCATGTTTGATCTAAGAGCA 58.812 37.500 25.43 11.21 0.00 4.26
5409 5659 4.952262 TGCATGTTTGATCTAAGAGCAC 57.048 40.909 0.00 0.00 0.00 4.40
5410 5660 3.691118 TGCATGTTTGATCTAAGAGCACC 59.309 43.478 0.00 0.00 0.00 5.01
5412 5662 4.034975 GCATGTTTGATCTAAGAGCACCTC 59.965 45.833 0.00 0.00 0.00 3.85
5413 5663 5.426504 CATGTTTGATCTAAGAGCACCTCT 58.573 41.667 0.00 0.00 43.37 3.69
5414 5664 6.577103 CATGTTTGATCTAAGAGCACCTCTA 58.423 40.000 0.00 0.00 40.28 2.43
5415 5665 6.214191 TGTTTGATCTAAGAGCACCTCTAG 57.786 41.667 0.00 0.00 40.28 2.43
5416 5666 4.927978 TTGATCTAAGAGCACCTCTAGC 57.072 45.455 0.00 0.00 40.28 3.42
5417 5667 3.903467 TGATCTAAGAGCACCTCTAGCA 58.097 45.455 0.00 0.00 40.28 3.49
5418 5668 3.888323 TGATCTAAGAGCACCTCTAGCAG 59.112 47.826 0.00 0.00 40.28 4.24
5419 5669 3.653835 TCTAAGAGCACCTCTAGCAGA 57.346 47.619 0.00 0.00 40.28 4.26
5420 5670 4.177537 TCTAAGAGCACCTCTAGCAGAT 57.822 45.455 0.00 0.00 40.28 2.90
5421 5671 4.141287 TCTAAGAGCACCTCTAGCAGATC 58.859 47.826 0.00 0.00 40.28 2.75
5422 5672 1.703411 AGAGCACCTCTAGCAGATCC 58.297 55.000 0.00 0.00 39.28 3.36
5423 5673 1.217689 AGAGCACCTCTAGCAGATCCT 59.782 52.381 0.00 0.00 39.28 3.24
5424 5674 1.340889 GAGCACCTCTAGCAGATCCTG 59.659 57.143 0.00 0.00 34.12 3.86
5433 5683 3.909662 CAGATCCTGCAAACCGGG 58.090 61.111 6.32 0.00 41.74 5.73
5434 5684 2.044946 AGATCCTGCAAACCGGGC 60.045 61.111 6.32 0.00 40.05 6.13
5435 5685 2.044946 GATCCTGCAAACCGGGCT 60.045 61.111 6.32 0.00 40.05 5.19
5436 5686 2.361610 ATCCTGCAAACCGGGCTG 60.362 61.111 6.32 3.06 40.05 4.85
5443 5693 3.646715 AAACCGGGCTGCCTGCTA 61.647 61.111 22.29 0.00 42.39 3.49
5444 5694 2.983879 AAACCGGGCTGCCTGCTAT 61.984 57.895 22.29 6.66 42.39 2.97
5445 5695 1.632018 AAACCGGGCTGCCTGCTATA 61.632 55.000 22.29 0.00 42.39 1.31
5446 5696 1.632018 AACCGGGCTGCCTGCTATAA 61.632 55.000 22.29 0.00 42.39 0.98
5447 5697 1.376466 CCGGGCTGCCTGCTATAAT 59.624 57.895 22.29 0.00 42.39 1.28
5448 5698 0.613260 CCGGGCTGCCTGCTATAATA 59.387 55.000 22.29 0.00 42.39 0.98
5449 5699 1.003118 CCGGGCTGCCTGCTATAATAA 59.997 52.381 22.29 0.00 42.39 1.40
5450 5700 2.076863 CGGGCTGCCTGCTATAATAAC 58.923 52.381 19.68 0.00 42.39 1.89
5451 5701 2.437413 GGGCTGCCTGCTATAATAACC 58.563 52.381 19.68 0.00 42.39 2.85
5452 5702 2.224769 GGGCTGCCTGCTATAATAACCA 60.225 50.000 19.68 0.00 42.39 3.67
5453 5703 3.562176 GGGCTGCCTGCTATAATAACCAT 60.562 47.826 19.68 0.00 42.39 3.55
5454 5704 4.324254 GGGCTGCCTGCTATAATAACCATA 60.324 45.833 19.68 0.00 42.39 2.74
5455 5705 4.878397 GGCTGCCTGCTATAATAACCATAG 59.122 45.833 12.43 0.00 42.39 2.23
5456 5706 5.338381 GGCTGCCTGCTATAATAACCATAGA 60.338 44.000 12.43 0.00 42.39 1.98
5457 5707 6.352516 GCTGCCTGCTATAATAACCATAGAT 58.647 40.000 0.00 0.00 38.95 1.98
5458 5708 7.419057 GGCTGCCTGCTATAATAACCATAGATA 60.419 40.741 12.43 0.00 42.39 1.98
5459 5709 8.153550 GCTGCCTGCTATAATAACCATAGATAT 58.846 37.037 0.00 0.00 38.95 1.63
5462 5712 9.646427 GCCTGCTATAATAACCATAGATATAGC 57.354 37.037 13.46 13.46 45.87 2.97
5465 5715 8.690680 GCTATAATAACCATAGATATAGCGGC 57.309 38.462 7.19 0.00 40.61 6.53
5466 5716 7.485277 GCTATAATAACCATAGATATAGCGGCG 59.515 40.741 0.51 0.51 40.61 6.46
5467 5717 5.847111 AATAACCATAGATATAGCGGCGA 57.153 39.130 12.98 0.00 0.00 5.54
5468 5718 6.406692 AATAACCATAGATATAGCGGCGAT 57.593 37.500 12.98 7.15 0.00 4.58
5469 5719 4.737855 AACCATAGATATAGCGGCGATT 57.262 40.909 12.98 0.00 0.00 3.34
5470 5720 4.737855 ACCATAGATATAGCGGCGATTT 57.262 40.909 12.98 0.77 0.00 2.17
5471 5721 5.086104 ACCATAGATATAGCGGCGATTTT 57.914 39.130 12.98 0.00 0.00 1.82
5472 5722 5.488341 ACCATAGATATAGCGGCGATTTTT 58.512 37.500 12.98 0.00 0.00 1.94
5473 5723 5.581085 ACCATAGATATAGCGGCGATTTTTC 59.419 40.000 12.98 4.26 0.00 2.29
5474 5724 5.580691 CCATAGATATAGCGGCGATTTTTCA 59.419 40.000 12.98 0.00 0.00 2.69
5475 5725 6.258727 CCATAGATATAGCGGCGATTTTTCAT 59.741 38.462 12.98 0.00 0.00 2.57
5476 5726 5.786401 AGATATAGCGGCGATTTTTCATC 57.214 39.130 12.98 0.00 0.00 2.92
5477 5727 4.631813 AGATATAGCGGCGATTTTTCATCC 59.368 41.667 12.98 0.00 0.00 3.51
5478 5728 1.305201 TAGCGGCGATTTTTCATCCC 58.695 50.000 12.98 0.00 0.00 3.85
5479 5729 0.679640 AGCGGCGATTTTTCATCCCA 60.680 50.000 12.98 0.00 0.00 4.37
5480 5730 0.172352 GCGGCGATTTTTCATCCCAA 59.828 50.000 12.98 0.00 0.00 4.12
5481 5731 1.403514 GCGGCGATTTTTCATCCCAAA 60.404 47.619 12.98 0.00 0.00 3.28
5482 5732 2.258755 CGGCGATTTTTCATCCCAAAC 58.741 47.619 0.00 0.00 0.00 2.93
5483 5733 2.352225 CGGCGATTTTTCATCCCAAACA 60.352 45.455 0.00 0.00 0.00 2.83
5484 5734 3.253230 GGCGATTTTTCATCCCAAACAG 58.747 45.455 0.00 0.00 0.00 3.16
5485 5735 3.056891 GGCGATTTTTCATCCCAAACAGA 60.057 43.478 0.00 0.00 0.00 3.41
5486 5736 4.381932 GGCGATTTTTCATCCCAAACAGAT 60.382 41.667 0.00 0.00 0.00 2.90
5487 5737 4.800471 GCGATTTTTCATCCCAAACAGATC 59.200 41.667 0.00 0.00 0.00 2.75
5488 5738 5.343249 CGATTTTTCATCCCAAACAGATCC 58.657 41.667 0.00 0.00 0.00 3.36
5489 5739 5.126061 CGATTTTTCATCCCAAACAGATCCT 59.874 40.000 0.00 0.00 0.00 3.24
5490 5740 6.318648 CGATTTTTCATCCCAAACAGATCCTA 59.681 38.462 0.00 0.00 0.00 2.94
5491 5741 7.013655 CGATTTTTCATCCCAAACAGATCCTAT 59.986 37.037 0.00 0.00 0.00 2.57
5492 5742 9.354673 GATTTTTCATCCCAAACAGATCCTATA 57.645 33.333 0.00 0.00 0.00 1.31
5493 5743 9.713684 ATTTTTCATCCCAAACAGATCCTATAA 57.286 29.630 0.00 0.00 0.00 0.98
5494 5744 9.540538 TTTTTCATCCCAAACAGATCCTATAAA 57.459 29.630 0.00 0.00 0.00 1.40
5495 5745 9.540538 TTTTCATCCCAAACAGATCCTATAAAA 57.459 29.630 0.00 0.00 0.00 1.52
5496 5746 9.713684 TTTCATCCCAAACAGATCCTATAAAAT 57.286 29.630 0.00 0.00 0.00 1.82
5497 5747 8.924511 TCATCCCAAACAGATCCTATAAAATC 57.075 34.615 0.00 0.00 0.00 2.17
5498 5748 7.661437 TCATCCCAAACAGATCCTATAAAATCG 59.339 37.037 0.00 0.00 0.00 3.34
5499 5749 5.763204 TCCCAAACAGATCCTATAAAATCGC 59.237 40.000 0.00 0.00 0.00 4.58
5500 5750 5.765182 CCCAAACAGATCCTATAAAATCGCT 59.235 40.000 0.00 0.00 0.00 4.93
5501 5751 6.073003 CCCAAACAGATCCTATAAAATCGCTC 60.073 42.308 0.00 0.00 0.00 5.03
5502 5752 6.346919 CCAAACAGATCCTATAAAATCGCTCG 60.347 42.308 0.00 0.00 0.00 5.03
5503 5753 5.455056 ACAGATCCTATAAAATCGCTCGT 57.545 39.130 0.00 0.00 0.00 4.18
5504 5754 5.462405 ACAGATCCTATAAAATCGCTCGTC 58.538 41.667 0.00 0.00 0.00 4.20
5505 5755 5.241949 ACAGATCCTATAAAATCGCTCGTCT 59.758 40.000 0.00 0.00 0.00 4.18
5506 5756 5.570973 CAGATCCTATAAAATCGCTCGTCTG 59.429 44.000 0.00 0.00 0.00 3.51
5507 5757 4.913335 TCCTATAAAATCGCTCGTCTGT 57.087 40.909 0.00 0.00 0.00 3.41
5508 5758 5.258456 TCCTATAAAATCGCTCGTCTGTT 57.742 39.130 0.00 0.00 0.00 3.16
5509 5759 6.381481 TCCTATAAAATCGCTCGTCTGTTA 57.619 37.500 0.00 0.00 0.00 2.41
5510 5760 6.798482 TCCTATAAAATCGCTCGTCTGTTAA 58.202 36.000 0.00 0.00 0.00 2.01
5511 5761 7.431249 TCCTATAAAATCGCTCGTCTGTTAAT 58.569 34.615 0.00 0.00 0.00 1.40
5512 5762 7.924412 TCCTATAAAATCGCTCGTCTGTTAATT 59.076 33.333 0.00 0.00 0.00 1.40
5513 5763 8.548721 CCTATAAAATCGCTCGTCTGTTAATTT 58.451 33.333 0.00 0.00 0.00 1.82
5514 5764 9.916397 CTATAAAATCGCTCGTCTGTTAATTTT 57.084 29.630 0.00 0.00 0.00 1.82
5538 5788 5.902613 TTTTTGGATCCTGCATAGTTCAG 57.097 39.130 14.23 0.00 0.00 3.02
5539 5789 4.842531 TTTGGATCCTGCATAGTTCAGA 57.157 40.909 14.23 0.00 33.54 3.27
5540 5790 3.827008 TGGATCCTGCATAGTTCAGAC 57.173 47.619 14.23 0.00 33.54 3.51
5541 5791 2.435805 TGGATCCTGCATAGTTCAGACC 59.564 50.000 14.23 0.00 33.54 3.85
5542 5792 2.546795 GGATCCTGCATAGTTCAGACCG 60.547 54.545 3.84 0.00 33.54 4.79
5543 5793 1.847328 TCCTGCATAGTTCAGACCGA 58.153 50.000 0.00 0.00 33.54 4.69
5544 5794 2.388735 TCCTGCATAGTTCAGACCGAT 58.611 47.619 0.00 0.00 33.54 4.18
5545 5795 2.766263 TCCTGCATAGTTCAGACCGATT 59.234 45.455 0.00 0.00 33.54 3.34
5546 5796 3.126831 CCTGCATAGTTCAGACCGATTC 58.873 50.000 0.00 0.00 33.54 2.52
5547 5797 3.181471 CCTGCATAGTTCAGACCGATTCT 60.181 47.826 0.00 0.00 33.54 2.40
5559 5809 6.993786 CAGACCGATTCTGCTATATCTAGA 57.006 41.667 0.00 0.00 45.51 2.43
5560 5810 7.015226 CAGACCGATTCTGCTATATCTAGAG 57.985 44.000 0.00 0.00 45.51 2.43
5561 5811 6.038161 CAGACCGATTCTGCTATATCTAGAGG 59.962 46.154 0.00 0.00 45.51 3.69
5562 5812 6.068461 ACCGATTCTGCTATATCTAGAGGA 57.932 41.667 0.00 0.00 0.00 3.71
5563 5813 6.668645 ACCGATTCTGCTATATCTAGAGGAT 58.331 40.000 0.00 0.00 38.38 3.24
5564 5814 7.122715 ACCGATTCTGCTATATCTAGAGGATT 58.877 38.462 0.00 0.00 35.98 3.01
5565 5815 7.284489 ACCGATTCTGCTATATCTAGAGGATTC 59.716 40.741 0.00 0.00 35.98 2.52
5566 5816 7.284261 CCGATTCTGCTATATCTAGAGGATTCA 59.716 40.741 0.00 0.00 35.98 2.57
5567 5817 8.849168 CGATTCTGCTATATCTAGAGGATTCAT 58.151 37.037 0.00 0.00 35.98 2.57
5583 5833 4.889995 GGATTCATCCCTCTTTTTACAGGG 59.110 45.833 0.00 0.00 41.20 4.45
5587 5837 2.999928 TCCCTCTTTTTACAGGGACCT 58.000 47.619 2.33 0.00 44.93 3.85
5588 5838 2.642807 TCCCTCTTTTTACAGGGACCTG 59.357 50.000 16.55 16.55 44.93 4.00
5603 5853 7.023197 CAGGGACCTGTAAAATAAATAACCG 57.977 40.000 10.22 0.00 39.10 4.44
5604 5854 6.600427 CAGGGACCTGTAAAATAAATAACCGT 59.400 38.462 10.22 0.00 39.10 4.83
5605 5855 7.121611 CAGGGACCTGTAAAATAAATAACCGTT 59.878 37.037 10.22 0.00 39.10 4.44
5606 5856 7.121611 AGGGACCTGTAAAATAAATAACCGTTG 59.878 37.037 0.00 0.00 0.00 4.10
5607 5857 7.252708 GGACCTGTAAAATAAATAACCGTTGG 58.747 38.462 0.00 0.00 0.00 3.77
5608 5858 6.623486 ACCTGTAAAATAAATAACCGTTGGC 58.377 36.000 0.00 0.00 0.00 4.52
5609 5859 5.740099 CCTGTAAAATAAATAACCGTTGGCG 59.260 40.000 0.00 0.00 37.95 5.69
5610 5860 5.094134 TGTAAAATAAATAACCGTTGGCGC 58.906 37.500 0.00 0.00 36.67 6.53
5611 5861 2.461897 AATAAATAACCGTTGGCGCG 57.538 45.000 0.00 0.00 36.67 6.86
5612 5862 1.654317 ATAAATAACCGTTGGCGCGA 58.346 45.000 12.10 0.00 36.67 5.87
5613 5863 1.000884 TAAATAACCGTTGGCGCGAG 58.999 50.000 12.10 0.00 36.67 5.03
5614 5864 0.671163 AAATAACCGTTGGCGCGAGA 60.671 50.000 12.10 0.00 36.67 4.04
5615 5865 1.082117 AATAACCGTTGGCGCGAGAG 61.082 55.000 12.10 0.00 36.67 3.20
5616 5866 1.940883 ATAACCGTTGGCGCGAGAGA 61.941 55.000 12.10 0.00 36.67 3.10
5617 5867 2.144833 TAACCGTTGGCGCGAGAGAA 62.145 55.000 12.10 0.00 36.67 2.87
5618 5868 3.479269 CCGTTGGCGCGAGAGAAC 61.479 66.667 12.10 5.05 36.67 3.01
5619 5869 2.430921 CGTTGGCGCGAGAGAACT 60.431 61.111 12.10 0.00 0.00 3.01
5620 5870 2.022129 CGTTGGCGCGAGAGAACTT 61.022 57.895 12.10 0.00 0.00 2.66
5621 5871 1.557443 CGTTGGCGCGAGAGAACTTT 61.557 55.000 12.10 0.00 0.00 2.66
5622 5872 0.164002 GTTGGCGCGAGAGAACTTTC 59.836 55.000 12.10 0.00 0.00 2.62
5623 5873 0.249699 TTGGCGCGAGAGAACTTTCA 60.250 50.000 12.10 0.00 0.00 2.69
5624 5874 0.667487 TGGCGCGAGAGAACTTTCAG 60.667 55.000 12.10 0.00 0.00 3.02
5625 5875 1.355066 GGCGCGAGAGAACTTTCAGG 61.355 60.000 12.10 0.00 0.00 3.86
5626 5876 0.667792 GCGCGAGAGAACTTTCAGGT 60.668 55.000 12.10 0.00 0.00 4.00
5627 5877 1.341606 CGCGAGAGAACTTTCAGGTC 58.658 55.000 0.00 0.00 30.24 3.85
5628 5878 1.715993 GCGAGAGAACTTTCAGGTCC 58.284 55.000 0.00 0.00 30.45 4.46
5629 5879 1.983972 CGAGAGAACTTTCAGGTCCG 58.016 55.000 0.00 0.00 30.45 4.79
5630 5880 1.402984 CGAGAGAACTTTCAGGTCCGG 60.403 57.143 0.00 0.00 30.45 5.14
5631 5881 0.321996 AGAGAACTTTCAGGTCCGGC 59.678 55.000 0.00 0.00 30.45 6.13
5632 5882 0.673956 GAGAACTTTCAGGTCCGGCC 60.674 60.000 0.00 0.59 30.45 6.13
5633 5883 1.072505 GAACTTTCAGGTCCGGCCA 59.927 57.895 15.92 0.00 40.61 5.36
5634 5884 1.228154 AACTTTCAGGTCCGGCCAC 60.228 57.895 15.92 1.14 40.61 5.01
5635 5885 2.359975 CTTTCAGGTCCGGCCACC 60.360 66.667 15.92 10.67 40.61 4.61
5648 5898 4.767255 CCACCGCCCTGAGCTGTC 62.767 72.222 0.00 0.00 36.71 3.51
5649 5899 4.007644 CACCGCCCTGAGCTGTCA 62.008 66.667 0.00 0.00 36.71 3.58
5650 5900 4.008933 ACCGCCCTGAGCTGTCAC 62.009 66.667 0.00 0.00 32.91 3.67
5651 5901 4.767255 CCGCCCTGAGCTGTCACC 62.767 72.222 0.00 0.00 40.39 4.02
5654 5904 3.699894 CCCTGAGCTGTCACCGCT 61.700 66.667 0.00 0.00 41.15 5.52
5655 5905 2.351244 CCCTGAGCTGTCACCGCTA 61.351 63.158 0.00 0.00 37.96 4.26
5656 5906 1.153745 CCTGAGCTGTCACCGCTAC 60.154 63.158 0.00 0.00 37.96 3.58
5657 5907 1.515088 CTGAGCTGTCACCGCTACG 60.515 63.158 0.00 0.00 37.96 3.51
5658 5908 2.201436 CTGAGCTGTCACCGCTACGT 62.201 60.000 0.00 0.00 37.96 3.57
5659 5909 1.801913 GAGCTGTCACCGCTACGTG 60.802 63.158 0.00 0.00 37.96 4.49
5660 5910 2.196382 GAGCTGTCACCGCTACGTGA 62.196 60.000 0.00 0.00 40.44 4.35
5661 5911 1.801913 GCTGTCACCGCTACGTGAG 60.802 63.158 0.00 0.00 43.26 3.51
5675 5925 5.627802 CTACGTGAGCTGCTATTTTACAG 57.372 43.478 0.15 0.00 36.96 2.74
5676 5926 3.262420 ACGTGAGCTGCTATTTTACAGG 58.738 45.455 0.15 3.54 34.38 4.00
5677 5927 2.609459 CGTGAGCTGCTATTTTACAGGG 59.391 50.000 0.15 0.00 34.38 4.45
5678 5928 3.678806 CGTGAGCTGCTATTTTACAGGGA 60.679 47.826 0.15 0.00 34.38 4.20
5679 5929 3.623510 GTGAGCTGCTATTTTACAGGGAC 59.376 47.826 0.15 0.00 34.38 4.46
5680 5930 3.206964 GAGCTGCTATTTTACAGGGACC 58.793 50.000 0.15 0.00 34.38 4.46
5681 5931 2.846827 AGCTGCTATTTTACAGGGACCT 59.153 45.455 0.00 0.00 34.38 3.85
5682 5932 3.267031 AGCTGCTATTTTACAGGGACCTT 59.733 43.478 0.00 0.00 34.38 3.50
5683 5933 4.017126 GCTGCTATTTTACAGGGACCTTT 58.983 43.478 0.00 0.00 34.38 3.11
5684 5934 4.462834 GCTGCTATTTTACAGGGACCTTTT 59.537 41.667 0.00 0.00 34.38 2.27
5685 5935 5.047306 GCTGCTATTTTACAGGGACCTTTTT 60.047 40.000 0.00 0.00 34.38 1.94
5686 5936 6.339587 TGCTATTTTACAGGGACCTTTTTG 57.660 37.500 0.00 0.00 0.00 2.44
5687 5937 5.836358 TGCTATTTTACAGGGACCTTTTTGT 59.164 36.000 0.00 0.00 0.00 2.83
5688 5938 7.005296 TGCTATTTTACAGGGACCTTTTTGTA 58.995 34.615 0.00 0.00 0.00 2.41
5689 5939 7.506261 TGCTATTTTACAGGGACCTTTTTGTAA 59.494 33.333 0.00 0.00 35.04 2.41
5690 5940 8.361889 GCTATTTTACAGGGACCTTTTTGTAAA 58.638 33.333 14.45 14.45 41.57 2.01
5693 5943 9.772973 ATTTTACAGGGACCTTTTTGTAAATTC 57.227 29.630 16.98 0.00 42.31 2.17
5694 5944 7.899648 TTACAGGGACCTTTTTGTAAATTCA 57.100 32.000 0.00 0.00 34.21 2.57
5695 5945 6.800072 ACAGGGACCTTTTTGTAAATTCAA 57.200 33.333 0.00 0.00 0.00 2.69
5696 5946 7.373617 ACAGGGACCTTTTTGTAAATTCAAT 57.626 32.000 0.00 0.00 0.00 2.57
5697 5947 7.801104 ACAGGGACCTTTTTGTAAATTCAATT 58.199 30.769 0.00 0.00 0.00 2.32
5698 5948 7.714813 ACAGGGACCTTTTTGTAAATTCAATTG 59.285 33.333 0.00 0.00 0.00 2.32
5699 5949 7.173047 CAGGGACCTTTTTGTAAATTCAATTGG 59.827 37.037 5.42 0.00 0.00 3.16
5700 5950 6.995686 GGGACCTTTTTGTAAATTCAATTGGT 59.004 34.615 5.42 0.00 32.15 3.67
5701 5951 7.500892 GGGACCTTTTTGTAAATTCAATTGGTT 59.499 33.333 5.42 0.00 30.86 3.67
5702 5952 8.898761 GGACCTTTTTGTAAATTCAATTGGTTT 58.101 29.630 5.42 9.78 30.86 3.27
5716 5966 8.877864 TTCAATTGGTTTATACAGGATCTGTT 57.122 30.769 5.42 0.00 42.59 3.16
5717 5967 8.506168 TCAATTGGTTTATACAGGATCTGTTC 57.494 34.615 5.42 0.00 42.59 3.18
5718 5968 8.328758 TCAATTGGTTTATACAGGATCTGTTCT 58.671 33.333 5.42 0.00 42.59 3.01
5719 5969 8.400947 CAATTGGTTTATACAGGATCTGTTCTG 58.599 37.037 5.86 0.00 42.59 3.02
5720 5970 5.428253 TGGTTTATACAGGATCTGTTCTGC 58.572 41.667 5.86 0.00 42.59 4.26
5721 5971 4.816925 GGTTTATACAGGATCTGTTCTGCC 59.183 45.833 5.86 0.62 42.59 4.85
5722 5972 4.689612 TTATACAGGATCTGTTCTGCCC 57.310 45.455 5.86 0.00 42.59 5.36
5723 5973 1.951209 TACAGGATCTGTTCTGCCCA 58.049 50.000 5.86 0.00 42.59 5.36
5724 5974 0.326264 ACAGGATCTGTTCTGCCCAC 59.674 55.000 0.00 0.00 42.59 4.61
5725 5975 0.325933 CAGGATCTGTTCTGCCCACA 59.674 55.000 0.00 0.00 0.00 4.17
5726 5976 1.064906 CAGGATCTGTTCTGCCCACAT 60.065 52.381 0.00 0.00 0.00 3.21
5727 5977 2.171237 CAGGATCTGTTCTGCCCACATA 59.829 50.000 0.00 0.00 0.00 2.29
5728 5978 3.051581 AGGATCTGTTCTGCCCACATAT 58.948 45.455 0.00 0.00 0.00 1.78
5729 5979 4.040829 CAGGATCTGTTCTGCCCACATATA 59.959 45.833 0.00 0.00 0.00 0.86
5730 5980 4.660303 AGGATCTGTTCTGCCCACATATAA 59.340 41.667 0.00 0.00 0.00 0.98
5731 5981 5.132648 AGGATCTGTTCTGCCCACATATAAA 59.867 40.000 0.00 0.00 0.00 1.40
5732 5982 6.006449 GGATCTGTTCTGCCCACATATAAAT 58.994 40.000 0.00 0.00 0.00 1.40
5733 5983 6.150140 GGATCTGTTCTGCCCACATATAAATC 59.850 42.308 0.00 0.00 0.00 2.17
5734 5984 5.056480 TCTGTTCTGCCCACATATAAATCG 58.944 41.667 0.00 0.00 0.00 3.34
5735 5985 4.776349 TGTTCTGCCCACATATAAATCGT 58.224 39.130 0.00 0.00 0.00 3.73
5736 5986 5.919755 TGTTCTGCCCACATATAAATCGTA 58.080 37.500 0.00 0.00 0.00 3.43
5737 5987 5.756347 TGTTCTGCCCACATATAAATCGTAC 59.244 40.000 0.00 0.00 0.00 3.67
5738 5988 4.890088 TCTGCCCACATATAAATCGTACC 58.110 43.478 0.00 0.00 0.00 3.34
5739 5989 4.345547 TCTGCCCACATATAAATCGTACCA 59.654 41.667 0.00 0.00 0.00 3.25
5740 5990 5.012664 TCTGCCCACATATAAATCGTACCAT 59.987 40.000 0.00 0.00 0.00 3.55
5741 5991 5.626142 TGCCCACATATAAATCGTACCATT 58.374 37.500 0.00 0.00 0.00 3.16
5742 5992 5.703592 TGCCCACATATAAATCGTACCATTC 59.296 40.000 0.00 0.00 0.00 2.67
5743 5993 5.163893 GCCCACATATAAATCGTACCATTCG 60.164 44.000 0.00 0.00 0.00 3.34
5744 5994 5.929992 CCCACATATAAATCGTACCATTCGT 59.070 40.000 0.00 0.00 0.00 3.85
5745 5995 6.425721 CCCACATATAAATCGTACCATTCGTT 59.574 38.462 0.00 0.00 0.00 3.85
5746 5996 7.041644 CCCACATATAAATCGTACCATTCGTTT 60.042 37.037 0.00 0.00 0.00 3.60
5747 5997 8.339714 CCACATATAAATCGTACCATTCGTTTT 58.660 33.333 0.00 0.00 35.45 2.43
5753 6003 7.894376 AAATCGTACCATTCGTTTTAAGAGA 57.106 32.000 0.00 0.00 31.51 3.10
5754 6004 8.488651 AAATCGTACCATTCGTTTTAAGAGAT 57.511 30.769 0.00 0.00 31.51 2.75
5755 6005 9.590451 AAATCGTACCATTCGTTTTAAGAGATA 57.410 29.630 0.00 0.00 31.51 1.98
5756 6006 9.760077 AATCGTACCATTCGTTTTAAGAGATAT 57.240 29.630 0.00 0.00 0.00 1.63
5757 6007 8.792831 TCGTACCATTCGTTTTAAGAGATATC 57.207 34.615 0.00 0.00 0.00 1.63
5758 6008 7.588854 TCGTACCATTCGTTTTAAGAGATATCG 59.411 37.037 0.00 0.00 0.00 2.92
5759 6009 7.377928 CGTACCATTCGTTTTAAGAGATATCGT 59.622 37.037 0.00 0.00 0.00 3.73
5760 6010 9.669353 GTACCATTCGTTTTAAGAGATATCGTA 57.331 33.333 0.00 0.00 0.00 3.43
5779 6029 6.859715 TCGTATACTGTTTTTAGAGAACGC 57.140 37.500 0.56 0.00 0.00 4.84
5780 6030 6.380995 TCGTATACTGTTTTTAGAGAACGCA 58.619 36.000 0.56 0.00 0.00 5.24
5781 6031 6.525628 TCGTATACTGTTTTTAGAGAACGCAG 59.474 38.462 0.56 0.00 0.00 5.18
5796 6046 1.129811 ACGCAGTTTTAACGGCTATGC 59.870 47.619 14.13 5.28 45.88 3.14
5797 6047 1.396996 CGCAGTTTTAACGGCTATGCT 59.603 47.619 14.13 0.00 45.88 3.79
5798 6048 2.605818 CGCAGTTTTAACGGCTATGCTA 59.394 45.455 14.13 0.00 45.88 3.49
5799 6049 3.302480 CGCAGTTTTAACGGCTATGCTAG 60.302 47.826 14.13 0.00 45.88 3.42
5800 6050 3.869246 GCAGTTTTAACGGCTATGCTAGA 59.131 43.478 9.92 0.00 44.88 2.43
5801 6051 4.025647 GCAGTTTTAACGGCTATGCTAGAG 60.026 45.833 9.92 0.00 44.88 2.43
5802 6052 5.348986 CAGTTTTAACGGCTATGCTAGAGA 58.651 41.667 0.00 0.00 0.00 3.10
5803 6053 5.986135 CAGTTTTAACGGCTATGCTAGAGAT 59.014 40.000 0.00 0.00 0.00 2.75
5804 6054 5.986135 AGTTTTAACGGCTATGCTAGAGATG 59.014 40.000 0.00 0.00 0.00 2.90
5805 6055 2.447244 AACGGCTATGCTAGAGATGC 57.553 50.000 0.00 0.00 0.00 3.91
5806 6056 1.626686 ACGGCTATGCTAGAGATGCT 58.373 50.000 0.00 0.00 0.00 3.79
5807 6057 1.543802 ACGGCTATGCTAGAGATGCTC 59.456 52.381 0.00 0.00 0.00 4.26
5808 6058 1.818060 CGGCTATGCTAGAGATGCTCT 59.182 52.381 0.00 2.22 43.83 4.09
5809 6059 3.013219 CGGCTATGCTAGAGATGCTCTA 58.987 50.000 0.00 4.30 41.50 2.43
5810 6060 3.441922 CGGCTATGCTAGAGATGCTCTAA 59.558 47.826 5.75 0.00 41.74 2.10
5811 6061 4.082517 CGGCTATGCTAGAGATGCTCTAAA 60.083 45.833 5.75 0.00 41.74 1.85
5812 6062 5.167845 GGCTATGCTAGAGATGCTCTAAAC 58.832 45.833 5.75 2.52 41.74 2.01
5848 6098 3.128242 GGAAGAACATCTCAACATGGCTG 59.872 47.826 0.00 0.00 0.00 4.85
5849 6099 3.430042 AGAACATCTCAACATGGCTGT 57.570 42.857 0.00 0.00 37.12 4.40
5881 6131 6.145696 CACTGTACTACAAAGGTTTACTCAGC 59.854 42.308 0.00 0.00 0.00 4.26
5941 6192 4.206477 AGGTGAAAGCAAAAGCAAAAGT 57.794 36.364 0.00 0.00 36.26 2.66
5942 6193 3.934579 AGGTGAAAGCAAAAGCAAAAGTG 59.065 39.130 0.00 0.00 36.26 3.16
6150 6700 1.072331 AGCCCTGTTGGTTCTGTAGTG 59.928 52.381 0.00 0.00 36.04 2.74
6164 6714 3.258372 TCTGTAGTGTAGGAGGTTTGCAG 59.742 47.826 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.538950 GAGTAGACACCGGACTCGTTT 59.461 52.381 9.46 0.00 31.01 3.60
113 114 2.092592 ACCGAATCCCTCCCATACAAAC 60.093 50.000 0.00 0.00 0.00 2.93
163 164 0.811616 GACAGAATAGCGGCACCCAG 60.812 60.000 1.45 0.00 0.00 4.45
177 178 2.083774 GCCACATGAAAATCCGACAGA 58.916 47.619 0.00 0.00 0.00 3.41
187 188 1.659233 CACCGCAAGCCACATGAAA 59.341 52.632 0.00 0.00 0.00 2.69
355 356 0.755698 GGTCCACTCCGATCCTGCTA 60.756 60.000 0.00 0.00 0.00 3.49
357 358 0.755698 TAGGTCCACTCCGATCCTGC 60.756 60.000 0.00 0.00 0.00 4.85
403 405 0.244450 CGCACCACCAATCAGCAATT 59.756 50.000 0.00 0.00 0.00 2.32
432 434 1.442017 GCACGTTTGTCAATCCGCC 60.442 57.895 5.38 0.00 0.00 6.13
468 471 5.104610 AGACCAGCAGATCAACATAATCACT 60.105 40.000 0.00 0.00 0.00 3.41
472 475 5.104610 ACAGAGACCAGCAGATCAACATAAT 60.105 40.000 0.00 0.00 0.00 1.28
587 603 3.362399 ATGCTCCACTCCAGTCGCG 62.362 63.158 0.00 0.00 0.00 5.87
614 630 5.750547 CCACACACAACACTCTATATGCTAG 59.249 44.000 0.00 0.00 0.00 3.42
648 664 0.389391 CACAAGTCGACCAGGACACT 59.611 55.000 13.01 0.00 39.42 3.55
756 774 5.502089 TTTCCTGGCATTTTTGGATGATT 57.498 34.783 0.00 0.00 0.00 2.57
772 798 7.818930 TCTTATTATTTGCAAGCCTTTTTCCTG 59.181 33.333 0.00 0.00 0.00 3.86
773 799 7.819415 GTCTTATTATTTGCAAGCCTTTTTCCT 59.181 33.333 0.00 0.00 0.00 3.36
775 801 8.435430 GTGTCTTATTATTTGCAAGCCTTTTTC 58.565 33.333 0.00 0.00 0.00 2.29
779 805 5.480073 TGGTGTCTTATTATTTGCAAGCCTT 59.520 36.000 0.00 0.00 0.00 4.35
795 823 2.890945 GTGGGCATAAAGTTGGTGTCTT 59.109 45.455 0.00 0.00 0.00 3.01
813 841 1.420138 AGACAGGGGTTAAGTGTGTGG 59.580 52.381 0.00 0.00 0.00 4.17
816 844 3.485463 TGAAGACAGGGGTTAAGTGTG 57.515 47.619 0.00 0.00 0.00 3.82
821 849 3.194968 GTCGAGATGAAGACAGGGGTTAA 59.805 47.826 0.00 0.00 37.34 2.01
822 850 2.758979 GTCGAGATGAAGACAGGGGTTA 59.241 50.000 0.00 0.00 37.34 2.85
823 851 1.550976 GTCGAGATGAAGACAGGGGTT 59.449 52.381 0.00 0.00 37.34 4.11
824 852 1.187087 GTCGAGATGAAGACAGGGGT 58.813 55.000 0.00 0.00 37.34 4.95
829 857 2.423577 TCGACTGTCGAGATGAAGACA 58.576 47.619 27.26 2.84 44.82 3.41
863 891 3.940221 GTGGGCGGTTTTATACATACACA 59.060 43.478 0.00 0.00 0.00 3.72
864 892 4.193865 AGTGGGCGGTTTTATACATACAC 58.806 43.478 0.00 0.00 0.00 2.90
865 893 4.444536 GAGTGGGCGGTTTTATACATACA 58.555 43.478 0.00 0.00 0.00 2.29
866 894 3.811497 GGAGTGGGCGGTTTTATACATAC 59.189 47.826 0.00 0.00 0.00 2.39
867 895 3.181452 GGGAGTGGGCGGTTTTATACATA 60.181 47.826 0.00 0.00 0.00 2.29
891 921 2.555325 TGATGAGAGTGCTTGGCTTTTG 59.445 45.455 0.00 0.00 0.00 2.44
900 930 2.898738 CGGCCTGATGAGAGTGCT 59.101 61.111 0.00 0.00 0.00 4.40
909 939 1.526917 GGTAATGCTGCGGCCTGAT 60.527 57.895 16.57 0.00 37.74 2.90
941 972 3.961414 GCGGAAAGGTGGTGGGGA 61.961 66.667 0.00 0.00 0.00 4.81
1455 1490 3.248602 GGCATTCGATTCGATAAAGCAGT 59.751 43.478 9.96 0.00 35.23 4.40
1465 1500 1.528586 GATCAGGTGGCATTCGATTCG 59.471 52.381 0.00 0.00 0.00 3.34
1470 1505 0.949397 CATGGATCAGGTGGCATTCG 59.051 55.000 0.00 0.00 0.00 3.34
1491 1550 1.810532 CTGACGAGTACAGGGGAGC 59.189 63.158 0.00 0.00 0.00 4.70
1546 1618 2.060050 TTTTCCTGCCGGAGAAACAA 57.940 45.000 5.05 0.00 41.25 2.83
1566 1638 6.263392 TCTGACGATTGAAAAATGGGTTGTTA 59.737 34.615 0.00 0.00 0.00 2.41
1574 1646 6.708676 TCGATGATCTGACGATTGAAAAATG 58.291 36.000 0.00 0.00 0.00 2.32
1575 1647 6.908870 TCGATGATCTGACGATTGAAAAAT 57.091 33.333 0.00 0.00 0.00 1.82
1618 1692 8.150945 ACTGCAGTAACTAATTGAGAGAGAAAA 58.849 33.333 20.16 0.00 0.00 2.29
1623 1697 8.585881 AGTTAACTGCAGTAACTAATTGAGAGA 58.414 33.333 26.48 0.31 32.85 3.10
1633 1707 4.822026 CTGCCTAGTTAACTGCAGTAACT 58.178 43.478 27.67 28.54 44.69 2.24
1674 1750 5.813080 AAGAAATGTTAATCGGCAGTACC 57.187 39.130 0.00 0.00 0.00 3.34
1682 1758 5.102313 GCAGGGGAAAAGAAATGTTAATCG 58.898 41.667 0.00 0.00 0.00 3.34
1701 1777 2.031516 CGACACCTCTTGCTGCAGG 61.032 63.158 17.12 5.27 35.69 4.85
1828 1904 0.768221 GGGGAGGATGGGATAGCACA 60.768 60.000 0.00 0.00 0.00 4.57
1833 1909 0.493639 CAGAGGGGGAGGATGGGATA 59.506 60.000 0.00 0.00 0.00 2.59
1837 1913 1.358830 AATGCAGAGGGGGAGGATGG 61.359 60.000 0.00 0.00 0.00 3.51
1878 1954 5.750352 AAAGGAAATTGGCAGTTCATCAT 57.250 34.783 13.10 0.00 0.00 2.45
1879 1955 5.549742 AAAAGGAAATTGGCAGTTCATCA 57.450 34.783 13.10 0.00 0.00 3.07
1880 1956 7.154656 AGTAAAAAGGAAATTGGCAGTTCATC 58.845 34.615 13.10 1.55 0.00 2.92
1904 1980 5.656416 TGGCCTGTCCTTTATTTTATCCAAG 59.344 40.000 3.32 0.00 35.26 3.61
1914 1994 7.394144 AGATTATAACTGGCCTGTCCTTTAT 57.606 36.000 16.45 12.01 35.26 1.40
1921 2001 5.468658 AGGAGTAGATTATAACTGGCCTGT 58.531 41.667 9.88 9.88 0.00 4.00
2010 2094 6.071165 AGGATTATCTGCCCTTTTTGTTTCAG 60.071 38.462 0.00 0.00 0.00 3.02
2059 2144 3.366374 GCATTTCCAAGTAACCAGCTCAC 60.366 47.826 0.00 0.00 0.00 3.51
2130 2248 8.912988 TGTTGCTATCCAAGATTAAAATTAGGG 58.087 33.333 0.00 0.00 33.21 3.53
2259 2379 0.961019 TGTGCAAGAAATGTCTGCCC 59.039 50.000 0.00 0.00 33.05 5.36
2347 2483 9.436957 AGATATAGTGTGTGACTAAAGTTTTGG 57.563 33.333 0.00 0.00 40.67 3.28
2403 2539 7.822658 TGTCTGTTAAATGCCTACCAAATTAC 58.177 34.615 0.00 0.00 0.00 1.89
2409 2545 6.597672 CACTAATGTCTGTTAAATGCCTACCA 59.402 38.462 0.00 0.00 0.00 3.25
2598 2747 9.209175 GTGTACTCATCAGTAAAGTGAAGAAAT 57.791 33.333 0.00 0.00 36.84 2.17
2698 2847 1.078143 GTCTGCTGGACCATGACCC 60.078 63.158 0.00 0.00 38.93 4.46
2716 2865 5.362556 TTGCCTCAGAAAAGAAAATCTCG 57.637 39.130 0.00 0.00 0.00 4.04
2736 2915 5.106277 TGCTTCTCAATTCTCATCTGCTTTG 60.106 40.000 0.00 0.00 0.00 2.77
2786 2966 6.681368 GCCAACCAGATTTGCCTTAAAGATAG 60.681 42.308 0.00 0.00 0.00 2.08
2942 3124 2.329399 ACCCCCTCCTCCCTCTCTC 61.329 68.421 0.00 0.00 0.00 3.20
2944 3126 2.041405 CACCCCCTCCTCCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
3092 3274 1.460305 AGTGAGGCACTGGACAGGT 60.460 57.895 4.14 0.00 43.63 4.00
3106 3288 4.122776 GAGTGAAGTTCAAAGCTCAGTGA 58.877 43.478 7.25 0.00 0.00 3.41
3253 3446 1.988107 AGAAAGCTGGGGACATGAGAA 59.012 47.619 0.00 0.00 41.51 2.87
3334 3536 2.618709 GTGGGGAACAAACAAGACTCTG 59.381 50.000 0.00 0.00 0.00 3.35
3336 3538 2.618709 CTGTGGGGAACAAACAAGACTC 59.381 50.000 0.00 0.00 38.67 3.36
3449 3657 3.119319 TCATTGTGCCTCCATAGGGTTA 58.881 45.455 0.00 0.00 43.87 2.85
3450 3658 1.922447 TCATTGTGCCTCCATAGGGTT 59.078 47.619 0.00 0.00 43.87 4.11
3452 3660 2.965671 ATCATTGTGCCTCCATAGGG 57.034 50.000 0.00 0.00 43.87 3.53
3453 3661 4.579454 CAAATCATTGTGCCTCCATAGG 57.421 45.455 0.00 0.00 46.76 2.57
3537 3759 0.179048 TGGAGAACAGTGTGTGCCTG 60.179 55.000 0.00 0.00 36.01 4.85
3538 3760 0.546122 TTGGAGAACAGTGTGTGCCT 59.454 50.000 0.00 0.00 0.00 4.75
3539 3761 1.609208 ATTGGAGAACAGTGTGTGCC 58.391 50.000 0.00 0.00 0.00 5.01
3540 3762 4.829064 TTAATTGGAGAACAGTGTGTGC 57.171 40.909 0.00 0.00 0.00 4.57
3541 3763 6.130298 TGTTTAATTGGAGAACAGTGTGTG 57.870 37.500 0.00 0.00 0.00 3.82
3542 3764 6.377146 AGTTGTTTAATTGGAGAACAGTGTGT 59.623 34.615 0.00 0.00 35.04 3.72
3543 3765 6.795399 AGTTGTTTAATTGGAGAACAGTGTG 58.205 36.000 0.00 0.00 35.04 3.82
3544 3766 7.404671 AAGTTGTTTAATTGGAGAACAGTGT 57.595 32.000 0.00 0.00 35.04 3.55
3567 3789 2.151502 TTTGTCAGTGCCCAAAGGAA 57.848 45.000 4.31 0.00 33.47 3.36
3625 3847 8.964476 ACCAAGATGATTAAAATGACTCGTAT 57.036 30.769 0.00 0.00 0.00 3.06
3627 3849 8.830580 CATACCAAGATGATTAAAATGACTCGT 58.169 33.333 0.00 0.00 0.00 4.18
3628 3850 8.830580 ACATACCAAGATGATTAAAATGACTCG 58.169 33.333 0.00 0.00 0.00 4.18
3698 3920 8.500753 ACTATTAGCACCATTACGAATCAAAA 57.499 30.769 0.00 0.00 0.00 2.44
3741 3964 1.540267 CTGCTCTGCAAAACTGCATCT 59.460 47.619 0.00 0.00 44.47 2.90
3757 3980 4.254709 TTGGGCGTGCTCACTGCT 62.255 61.111 0.00 0.00 43.37 4.24
3811 4034 2.281484 TTGTCCTTGAGCCACCGC 60.281 61.111 0.00 0.00 0.00 5.68
3943 4166 0.594284 CGCGATCGTCTTTACCTCCC 60.594 60.000 17.81 0.00 0.00 4.30
3946 4169 1.226888 GGCGCGATCGTCTTTACCT 60.227 57.895 17.81 0.00 37.34 3.08
4180 4403 3.128242 CAGTCATGCCCATGTCTTTTCTC 59.872 47.826 8.02 0.00 39.72 2.87
4181 4404 3.087031 CAGTCATGCCCATGTCTTTTCT 58.913 45.455 8.02 0.00 39.72 2.52
4207 4430 1.982073 GCTGCCGATCAAGAAACGGG 61.982 60.000 16.36 6.25 45.66 5.28
4672 4901 1.217244 GAGATGTACCACGCCCGTT 59.783 57.895 0.00 0.00 0.00 4.44
4690 4919 4.015084 AGGAGATCAAGAACAATGCAAGG 58.985 43.478 0.00 0.00 0.00 3.61
4697 4926 8.985315 ATTATGCAATAGGAGATCAAGAACAA 57.015 30.769 0.00 0.00 0.00 2.83
4779 5023 1.703438 GCGACATGCCTGCTCTTCAG 61.703 60.000 0.00 0.00 42.49 3.02
4839 5083 7.696017 TGGCTGTATATGTACTGTAGGAGATA 58.304 38.462 8.03 0.00 33.66 1.98
4885 5129 1.798813 GAGACAAAACCACACGGCTAG 59.201 52.381 0.00 0.00 34.57 3.42
5185 5434 2.035469 ATCACCATGGGTTGCGCA 59.965 55.556 18.09 5.66 31.02 6.09
5187 5436 2.472059 CGGATCACCATGGGTTGCG 61.472 63.158 18.09 13.08 31.02 4.85
5195 5444 2.239654 ACAAGGTCAATCGGATCACCAT 59.760 45.455 17.13 6.46 35.59 3.55
5204 5453 6.241207 ACACATTTCTAACAAGGTCAATCG 57.759 37.500 0.00 0.00 0.00 3.34
5390 5640 5.426504 AGAGGTGCTCTTAGATCAAACATG 58.573 41.667 0.00 0.00 37.60 3.21
5403 5653 1.217689 AGGATCTGCTAGAGGTGCTCT 59.782 52.381 0.00 0.00 43.83 4.09
5404 5654 1.340889 CAGGATCTGCTAGAGGTGCTC 59.659 57.143 0.00 0.00 29.08 4.26
5405 5655 1.412079 CAGGATCTGCTAGAGGTGCT 58.588 55.000 0.00 0.00 32.60 4.40
5406 5656 3.984838 CAGGATCTGCTAGAGGTGC 57.015 57.895 0.00 0.00 0.00 5.01
5416 5666 2.409870 GCCCGGTTTGCAGGATCTG 61.410 63.158 0.00 0.00 31.21 2.90
5417 5667 2.044946 GCCCGGTTTGCAGGATCT 60.045 61.111 0.00 0.00 31.21 2.75
5418 5668 2.044946 AGCCCGGTTTGCAGGATC 60.045 61.111 0.00 0.00 31.21 3.36
5419 5669 2.361610 CAGCCCGGTTTGCAGGAT 60.362 61.111 0.00 0.00 31.21 3.24
5433 5683 5.734720 TCTATGGTTATTATAGCAGGCAGC 58.265 41.667 0.00 0.00 46.19 5.25
5436 5686 9.646427 GCTATATCTATGGTTATTATAGCAGGC 57.354 37.037 12.85 0.00 40.07 4.85
5437 5687 9.847706 CGCTATATCTATGGTTATTATAGCAGG 57.152 37.037 16.21 2.62 40.23 4.85
5438 5688 9.847706 CCGCTATATCTATGGTTATTATAGCAG 57.152 37.037 16.21 10.63 40.23 4.24
5439 5689 8.304596 GCCGCTATATCTATGGTTATTATAGCA 58.695 37.037 16.21 0.00 40.23 3.49
5440 5690 7.485277 CGCCGCTATATCTATGGTTATTATAGC 59.515 40.741 9.23 9.23 38.17 2.97
5441 5691 8.727910 TCGCCGCTATATCTATGGTTATTATAG 58.272 37.037 0.00 0.00 0.00 1.31
5442 5692 8.625786 TCGCCGCTATATCTATGGTTATTATA 57.374 34.615 0.00 0.00 0.00 0.98
5443 5693 7.520451 TCGCCGCTATATCTATGGTTATTAT 57.480 36.000 0.00 0.00 0.00 1.28
5444 5694 6.947644 TCGCCGCTATATCTATGGTTATTA 57.052 37.500 0.00 0.00 0.00 0.98
5445 5695 5.847111 TCGCCGCTATATCTATGGTTATT 57.153 39.130 0.00 0.00 0.00 1.40
5446 5696 6.406692 AATCGCCGCTATATCTATGGTTAT 57.593 37.500 0.00 0.00 0.00 1.89
5447 5697 5.847111 AATCGCCGCTATATCTATGGTTA 57.153 39.130 0.00 0.00 0.00 2.85
5448 5698 4.737855 AATCGCCGCTATATCTATGGTT 57.262 40.909 0.00 0.00 0.00 3.67
5449 5699 4.737855 AAATCGCCGCTATATCTATGGT 57.262 40.909 0.00 0.00 0.00 3.55
5450 5700 5.580691 TGAAAAATCGCCGCTATATCTATGG 59.419 40.000 0.00 0.00 0.00 2.74
5451 5701 6.647212 TGAAAAATCGCCGCTATATCTATG 57.353 37.500 0.00 0.00 0.00 2.23
5452 5702 6.480320 GGATGAAAAATCGCCGCTATATCTAT 59.520 38.462 0.00 0.00 0.00 1.98
5453 5703 5.810587 GGATGAAAAATCGCCGCTATATCTA 59.189 40.000 0.00 0.00 0.00 1.98
5454 5704 4.631813 GGATGAAAAATCGCCGCTATATCT 59.368 41.667 0.00 0.00 0.00 1.98
5455 5705 4.201822 GGGATGAAAAATCGCCGCTATATC 60.202 45.833 0.00 0.00 0.00 1.63
5456 5706 3.689649 GGGATGAAAAATCGCCGCTATAT 59.310 43.478 0.00 0.00 0.00 0.86
5457 5707 3.071479 GGGATGAAAAATCGCCGCTATA 58.929 45.455 0.00 0.00 0.00 1.31
5458 5708 1.880027 GGGATGAAAAATCGCCGCTAT 59.120 47.619 0.00 0.00 0.00 2.97
5459 5709 1.305201 GGGATGAAAAATCGCCGCTA 58.695 50.000 0.00 0.00 0.00 4.26
5460 5710 0.679640 TGGGATGAAAAATCGCCGCT 60.680 50.000 0.63 0.00 0.00 5.52
5461 5711 0.172352 TTGGGATGAAAAATCGCCGC 59.828 50.000 0.63 0.00 0.00 6.53
5462 5712 2.258755 GTTTGGGATGAAAAATCGCCG 58.741 47.619 0.63 0.00 0.00 6.46
5463 5713 3.056891 TCTGTTTGGGATGAAAAATCGCC 60.057 43.478 0.63 0.00 0.00 5.54
5464 5714 4.173036 TCTGTTTGGGATGAAAAATCGC 57.827 40.909 0.00 0.00 0.00 4.58
5465 5715 5.126061 AGGATCTGTTTGGGATGAAAAATCG 59.874 40.000 0.00 0.00 0.00 3.34
5466 5716 6.535963 AGGATCTGTTTGGGATGAAAAATC 57.464 37.500 0.00 0.00 0.00 2.17
5467 5717 9.713684 TTATAGGATCTGTTTGGGATGAAAAAT 57.286 29.630 0.00 0.00 0.00 1.82
5468 5718 9.540538 TTTATAGGATCTGTTTGGGATGAAAAA 57.459 29.630 0.00 0.00 0.00 1.94
5469 5719 9.540538 TTTTATAGGATCTGTTTGGGATGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
5470 5720 9.713684 ATTTTATAGGATCTGTTTGGGATGAAA 57.286 29.630 0.00 0.00 0.00 2.69
5471 5721 9.354673 GATTTTATAGGATCTGTTTGGGATGAA 57.645 33.333 0.00 0.00 0.00 2.57
5472 5722 7.661437 CGATTTTATAGGATCTGTTTGGGATGA 59.339 37.037 0.00 0.00 0.00 2.92
5473 5723 7.573843 GCGATTTTATAGGATCTGTTTGGGATG 60.574 40.741 0.00 0.00 0.00 3.51
5474 5724 6.431234 GCGATTTTATAGGATCTGTTTGGGAT 59.569 38.462 0.00 0.00 0.00 3.85
5475 5725 5.763204 GCGATTTTATAGGATCTGTTTGGGA 59.237 40.000 0.00 0.00 0.00 4.37
5476 5726 5.765182 AGCGATTTTATAGGATCTGTTTGGG 59.235 40.000 0.00 0.00 0.00 4.12
5477 5727 6.346919 CGAGCGATTTTATAGGATCTGTTTGG 60.347 42.308 0.00 0.00 0.00 3.28
5478 5728 6.201044 ACGAGCGATTTTATAGGATCTGTTTG 59.799 38.462 0.00 0.00 0.00 2.93
5479 5729 6.281405 ACGAGCGATTTTATAGGATCTGTTT 58.719 36.000 0.00 0.00 0.00 2.83
5480 5730 5.844004 ACGAGCGATTTTATAGGATCTGTT 58.156 37.500 0.00 0.00 0.00 3.16
5481 5731 5.241949 AGACGAGCGATTTTATAGGATCTGT 59.758 40.000 0.00 0.00 0.00 3.41
5482 5732 5.570973 CAGACGAGCGATTTTATAGGATCTG 59.429 44.000 0.00 0.00 0.00 2.90
5483 5733 5.241949 ACAGACGAGCGATTTTATAGGATCT 59.758 40.000 0.00 0.00 0.00 2.75
5484 5734 5.462405 ACAGACGAGCGATTTTATAGGATC 58.538 41.667 0.00 0.00 0.00 3.36
5485 5735 5.455056 ACAGACGAGCGATTTTATAGGAT 57.545 39.130 0.00 0.00 0.00 3.24
5486 5736 4.913335 ACAGACGAGCGATTTTATAGGA 57.087 40.909 0.00 0.00 0.00 2.94
5487 5737 7.639162 ATTAACAGACGAGCGATTTTATAGG 57.361 36.000 0.00 0.00 0.00 2.57
5488 5738 9.916397 AAAATTAACAGACGAGCGATTTTATAG 57.084 29.630 0.00 0.00 0.00 1.31
5516 5766 5.415701 GTCTGAACTATGCAGGATCCAAAAA 59.584 40.000 15.82 0.00 34.20 1.94
5517 5767 4.943705 GTCTGAACTATGCAGGATCCAAAA 59.056 41.667 15.82 0.00 34.20 2.44
5518 5768 4.517285 GTCTGAACTATGCAGGATCCAAA 58.483 43.478 15.82 0.00 34.20 3.28
5519 5769 3.118261 GGTCTGAACTATGCAGGATCCAA 60.118 47.826 15.82 0.00 34.20 3.53
5520 5770 2.435805 GGTCTGAACTATGCAGGATCCA 59.564 50.000 15.82 0.00 34.20 3.41
5521 5771 2.546795 CGGTCTGAACTATGCAGGATCC 60.547 54.545 2.48 2.48 34.20 3.36
5522 5772 2.362397 TCGGTCTGAACTATGCAGGATC 59.638 50.000 0.00 0.00 34.20 3.36
5523 5773 2.388735 TCGGTCTGAACTATGCAGGAT 58.611 47.619 0.00 0.00 34.20 3.24
5524 5774 1.847328 TCGGTCTGAACTATGCAGGA 58.153 50.000 0.00 0.00 34.20 3.86
5525 5775 2.898729 ATCGGTCTGAACTATGCAGG 57.101 50.000 0.00 0.00 34.20 4.85
5526 5776 4.052159 AGAATCGGTCTGAACTATGCAG 57.948 45.455 0.00 0.00 34.29 4.41
5537 5787 6.069905 TCCTCTAGATATAGCAGAATCGGTCT 60.070 42.308 0.00 0.00 36.88 3.85
5538 5788 6.116806 TCCTCTAGATATAGCAGAATCGGTC 58.883 44.000 0.00 0.00 0.00 4.79
5539 5789 6.068461 TCCTCTAGATATAGCAGAATCGGT 57.932 41.667 0.00 0.00 0.00 4.69
5540 5790 7.284261 TGAATCCTCTAGATATAGCAGAATCGG 59.716 40.741 0.00 0.00 33.66 4.18
5541 5791 8.219546 TGAATCCTCTAGATATAGCAGAATCG 57.780 38.462 0.00 0.00 33.66 3.34
5543 5793 9.146586 GGATGAATCCTCTAGATATAGCAGAAT 57.853 37.037 1.86 0.00 43.73 2.40
5544 5794 7.563188 GGGATGAATCCTCTAGATATAGCAGAA 59.437 40.741 9.18 0.00 46.35 3.02
5545 5795 7.066142 GGGATGAATCCTCTAGATATAGCAGA 58.934 42.308 9.18 0.00 46.35 4.26
5546 5796 7.068702 AGGGATGAATCCTCTAGATATAGCAG 58.931 42.308 9.18 0.00 46.35 4.24
5547 5797 6.991064 AGGGATGAATCCTCTAGATATAGCA 58.009 40.000 9.18 0.00 46.35 3.49
5548 5798 7.524717 GAGGGATGAATCCTCTAGATATAGC 57.475 44.000 9.18 0.00 45.46 2.97
5559 5809 5.760131 CCTGTAAAAAGAGGGATGAATCCT 58.240 41.667 9.18 0.00 46.35 3.24
5580 5830 6.724351 ACGGTTATTTATTTTACAGGTCCCT 58.276 36.000 0.00 0.00 0.00 4.20
5581 5831 7.252708 CAACGGTTATTTATTTTACAGGTCCC 58.747 38.462 0.00 0.00 0.00 4.46
5582 5832 7.252708 CCAACGGTTATTTATTTTACAGGTCC 58.747 38.462 0.00 0.00 0.00 4.46
5583 5833 6.748658 GCCAACGGTTATTTATTTTACAGGTC 59.251 38.462 0.00 0.00 0.00 3.85
5584 5834 6.623331 CGCCAACGGTTATTTATTTTACAGGT 60.623 38.462 0.00 0.00 34.97 4.00
5585 5835 5.740099 CGCCAACGGTTATTTATTTTACAGG 59.260 40.000 0.00 0.00 34.97 4.00
5586 5836 5.228427 GCGCCAACGGTTATTTATTTTACAG 59.772 40.000 0.00 0.00 40.57 2.74
5587 5837 5.094134 GCGCCAACGGTTATTTATTTTACA 58.906 37.500 0.00 0.00 40.57 2.41
5588 5838 4.202759 CGCGCCAACGGTTATTTATTTTAC 59.797 41.667 0.00 0.00 40.57 2.01
5589 5839 4.093998 TCGCGCCAACGGTTATTTATTTTA 59.906 37.500 0.00 0.00 40.57 1.52
5590 5840 3.119919 TCGCGCCAACGGTTATTTATTTT 60.120 39.130 0.00 0.00 40.57 1.82
5591 5841 2.419324 TCGCGCCAACGGTTATTTATTT 59.581 40.909 0.00 0.00 40.57 1.40
5592 5842 2.008329 TCGCGCCAACGGTTATTTATT 58.992 42.857 0.00 0.00 40.57 1.40
5593 5843 1.595794 CTCGCGCCAACGGTTATTTAT 59.404 47.619 0.00 0.00 40.57 1.40
5594 5844 1.000884 CTCGCGCCAACGGTTATTTA 58.999 50.000 0.00 0.00 40.57 1.40
5595 5845 0.671163 TCTCGCGCCAACGGTTATTT 60.671 50.000 0.00 0.00 40.57 1.40
5596 5846 1.079681 TCTCGCGCCAACGGTTATT 60.080 52.632 0.00 0.00 40.57 1.40
5597 5847 1.518572 CTCTCGCGCCAACGGTTAT 60.519 57.895 0.00 0.00 40.57 1.89
5598 5848 2.126228 CTCTCGCGCCAACGGTTA 60.126 61.111 0.00 0.00 40.57 2.85
5599 5849 3.509137 TTCTCTCGCGCCAACGGTT 62.509 57.895 0.00 0.00 40.57 4.44
5600 5850 3.986006 TTCTCTCGCGCCAACGGT 61.986 61.111 0.00 0.00 40.57 4.83
5601 5851 3.479269 GTTCTCTCGCGCCAACGG 61.479 66.667 0.00 0.00 40.57 4.44
5602 5852 1.557443 AAAGTTCTCTCGCGCCAACG 61.557 55.000 0.00 0.00 44.07 4.10
5603 5853 0.164002 GAAAGTTCTCTCGCGCCAAC 59.836 55.000 0.00 0.91 0.00 3.77
5604 5854 0.249699 TGAAAGTTCTCTCGCGCCAA 60.250 50.000 0.00 0.00 0.00 4.52
5605 5855 0.667487 CTGAAAGTTCTCTCGCGCCA 60.667 55.000 0.00 0.00 0.00 5.69
5606 5856 1.355066 CCTGAAAGTTCTCTCGCGCC 61.355 60.000 0.00 0.00 0.00 6.53
5607 5857 0.667792 ACCTGAAAGTTCTCTCGCGC 60.668 55.000 0.00 0.00 0.00 6.86
5608 5858 1.341606 GACCTGAAAGTTCTCTCGCG 58.658 55.000 0.00 0.00 0.00 5.87
5609 5859 1.715993 GGACCTGAAAGTTCTCTCGC 58.284 55.000 0.00 0.00 0.00 5.03
5610 5860 1.402984 CCGGACCTGAAAGTTCTCTCG 60.403 57.143 0.00 0.00 0.00 4.04
5611 5861 1.673329 GCCGGACCTGAAAGTTCTCTC 60.673 57.143 5.05 0.00 0.00 3.20
5612 5862 0.321996 GCCGGACCTGAAAGTTCTCT 59.678 55.000 5.05 0.00 0.00 3.10
5613 5863 0.673956 GGCCGGACCTGAAAGTTCTC 60.674 60.000 5.05 0.00 34.51 2.87
5614 5864 1.375326 GGCCGGACCTGAAAGTTCT 59.625 57.895 5.05 0.00 34.51 3.01
5615 5865 1.072505 TGGCCGGACCTGAAAGTTC 59.927 57.895 3.83 0.00 40.22 3.01
5616 5866 1.228154 GTGGCCGGACCTGAAAGTT 60.228 57.895 3.83 0.00 40.22 2.66
5617 5867 2.430367 GTGGCCGGACCTGAAAGT 59.570 61.111 3.83 0.00 40.22 2.66
5618 5868 2.359975 GGTGGCCGGACCTGAAAG 60.360 66.667 3.83 0.00 40.22 2.62
5619 5869 4.323477 CGGTGGCCGGACCTGAAA 62.323 66.667 3.83 0.00 44.15 2.69
5637 5887 2.351244 TAGCGGTGACAGCTCAGGG 61.351 63.158 14.59 0.00 44.79 4.45
5638 5888 1.153745 GTAGCGGTGACAGCTCAGG 60.154 63.158 14.59 0.00 44.79 3.86
5639 5889 1.515088 CGTAGCGGTGACAGCTCAG 60.515 63.158 14.59 5.74 44.79 3.35
5640 5890 2.265904 ACGTAGCGGTGACAGCTCA 61.266 57.895 14.59 0.00 44.79 4.26
5641 5891 1.801913 CACGTAGCGGTGACAGCTC 60.802 63.158 14.59 5.39 44.79 4.09
5643 5893 1.801913 CTCACGTAGCGGTGACAGC 60.802 63.158 0.00 0.00 41.76 4.40
5644 5894 1.801913 GCTCACGTAGCGGTGACAG 60.802 63.158 0.00 0.00 41.76 3.51
5645 5895 2.257371 GCTCACGTAGCGGTGACA 59.743 61.111 0.00 0.00 41.76 3.58
5653 5903 4.504461 CCTGTAAAATAGCAGCTCACGTAG 59.496 45.833 0.00 0.00 0.00 3.51
5654 5904 4.430007 CCTGTAAAATAGCAGCTCACGTA 58.570 43.478 0.00 0.00 0.00 3.57
5655 5905 3.262420 CCTGTAAAATAGCAGCTCACGT 58.738 45.455 0.00 0.00 0.00 4.49
5656 5906 2.609459 CCCTGTAAAATAGCAGCTCACG 59.391 50.000 0.00 0.00 0.00 4.35
5657 5907 3.623510 GTCCCTGTAAAATAGCAGCTCAC 59.376 47.826 0.00 0.00 0.00 3.51
5658 5908 3.370527 GGTCCCTGTAAAATAGCAGCTCA 60.371 47.826 0.00 0.00 0.00 4.26
5659 5909 3.118223 AGGTCCCTGTAAAATAGCAGCTC 60.118 47.826 0.00 0.00 0.00 4.09
5660 5910 2.846827 AGGTCCCTGTAAAATAGCAGCT 59.153 45.455 0.00 0.00 0.00 4.24
5661 5911 3.283259 AGGTCCCTGTAAAATAGCAGC 57.717 47.619 0.00 0.00 0.00 5.25
5662 5912 6.015434 ACAAAAAGGTCCCTGTAAAATAGCAG 60.015 38.462 0.00 0.00 0.00 4.24
5663 5913 5.836358 ACAAAAAGGTCCCTGTAAAATAGCA 59.164 36.000 0.00 0.00 0.00 3.49
5664 5914 6.340962 ACAAAAAGGTCCCTGTAAAATAGC 57.659 37.500 0.00 0.00 0.00 2.97
5667 5917 9.772973 GAATTTACAAAAAGGTCCCTGTAAAAT 57.227 29.630 14.99 10.02 43.60 1.82
5668 5918 8.759782 TGAATTTACAAAAAGGTCCCTGTAAAA 58.240 29.630 14.99 3.24 43.60 1.52
5669 5919 8.307582 TGAATTTACAAAAAGGTCCCTGTAAA 57.692 30.769 14.03 14.03 44.16 2.01
5670 5920 7.899648 TGAATTTACAAAAAGGTCCCTGTAA 57.100 32.000 0.00 0.00 33.57 2.41
5671 5921 7.899648 TTGAATTTACAAAAAGGTCCCTGTA 57.100 32.000 0.00 0.00 0.00 2.74
5672 5922 6.800072 TTGAATTTACAAAAAGGTCCCTGT 57.200 33.333 0.00 0.00 0.00 4.00
5673 5923 7.173047 CCAATTGAATTTACAAAAAGGTCCCTG 59.827 37.037 7.12 0.00 33.44 4.45
5674 5924 7.147391 ACCAATTGAATTTACAAAAAGGTCCCT 60.147 33.333 7.12 0.00 31.67 4.20
5675 5925 6.995686 ACCAATTGAATTTACAAAAAGGTCCC 59.004 34.615 7.12 0.00 31.67 4.46
5676 5926 8.445275 AACCAATTGAATTTACAAAAAGGTCC 57.555 30.769 7.12 0.00 34.08 4.46
5689 5939 9.479549 ACAGATCCTGTATAAACCAATTGAATT 57.520 29.630 7.12 4.03 43.46 2.17
5690 5940 9.479549 AACAGATCCTGTATAAACCAATTGAAT 57.520 29.630 7.12 0.00 44.62 2.57
5691 5941 8.877864 AACAGATCCTGTATAAACCAATTGAA 57.122 30.769 7.12 0.00 44.62 2.69
5692 5942 8.328758 AGAACAGATCCTGTATAAACCAATTGA 58.671 33.333 7.12 0.00 44.62 2.57
5693 5943 8.400947 CAGAACAGATCCTGTATAAACCAATTG 58.599 37.037 0.00 0.00 44.62 2.32
5694 5944 7.067494 GCAGAACAGATCCTGTATAAACCAATT 59.933 37.037 0.00 0.00 44.62 2.32
5695 5945 6.543831 GCAGAACAGATCCTGTATAAACCAAT 59.456 38.462 0.00 0.00 44.62 3.16
5696 5946 5.880332 GCAGAACAGATCCTGTATAAACCAA 59.120 40.000 0.00 0.00 44.62 3.67
5697 5947 5.428253 GCAGAACAGATCCTGTATAAACCA 58.572 41.667 0.00 0.00 44.62 3.67
5698 5948 4.816925 GGCAGAACAGATCCTGTATAAACC 59.183 45.833 0.00 0.00 44.62 3.27
5699 5949 4.816925 GGGCAGAACAGATCCTGTATAAAC 59.183 45.833 0.00 0.00 44.62 2.01
5700 5950 4.473196 TGGGCAGAACAGATCCTGTATAAA 59.527 41.667 0.00 0.00 44.62 1.40
5701 5951 4.037222 TGGGCAGAACAGATCCTGTATAA 58.963 43.478 0.00 0.00 44.62 0.98
5702 5952 3.388024 GTGGGCAGAACAGATCCTGTATA 59.612 47.826 0.00 0.00 44.62 1.47
5703 5953 2.171448 GTGGGCAGAACAGATCCTGTAT 59.829 50.000 0.00 0.00 44.62 2.29
5704 5954 1.555075 GTGGGCAGAACAGATCCTGTA 59.445 52.381 0.00 0.00 44.62 2.74
5706 5956 0.325933 TGTGGGCAGAACAGATCCTG 59.674 55.000 0.00 0.00 37.52 3.86
5707 5957 1.293062 ATGTGGGCAGAACAGATCCT 58.707 50.000 0.00 0.00 0.00 3.24
5708 5958 3.498774 ATATGTGGGCAGAACAGATCC 57.501 47.619 0.00 0.00 0.00 3.36
5709 5959 6.128445 CGATTTATATGTGGGCAGAACAGATC 60.128 42.308 0.00 0.00 32.13 2.75
5710 5960 5.702670 CGATTTATATGTGGGCAGAACAGAT 59.297 40.000 0.00 0.00 34.13 2.90
5711 5961 5.056480 CGATTTATATGTGGGCAGAACAGA 58.944 41.667 0.00 0.00 0.00 3.41
5712 5962 4.816385 ACGATTTATATGTGGGCAGAACAG 59.184 41.667 0.00 0.00 0.00 3.16
5713 5963 4.776349 ACGATTTATATGTGGGCAGAACA 58.224 39.130 0.00 0.00 0.00 3.18
5714 5964 5.178809 GGTACGATTTATATGTGGGCAGAAC 59.821 44.000 0.00 0.00 0.00 3.01
5715 5965 5.163290 TGGTACGATTTATATGTGGGCAGAA 60.163 40.000 0.00 0.00 0.00 3.02
5716 5966 4.345547 TGGTACGATTTATATGTGGGCAGA 59.654 41.667 0.00 0.00 0.00 4.26
5717 5967 4.637276 TGGTACGATTTATATGTGGGCAG 58.363 43.478 0.00 0.00 0.00 4.85
5718 5968 4.691326 TGGTACGATTTATATGTGGGCA 57.309 40.909 0.00 0.00 0.00 5.36
5719 5969 5.163893 CGAATGGTACGATTTATATGTGGGC 60.164 44.000 4.49 0.00 0.00 5.36
5720 5970 5.929992 ACGAATGGTACGATTTATATGTGGG 59.070 40.000 4.49 0.00 34.70 4.61
5721 5971 7.416154 AACGAATGGTACGATTTATATGTGG 57.584 36.000 4.49 0.00 34.70 4.17
5727 5977 9.590451 TCTCTTAAAACGAATGGTACGATTTAT 57.410 29.630 4.49 0.00 37.63 1.40
5728 5978 8.984891 TCTCTTAAAACGAATGGTACGATTTA 57.015 30.769 4.49 0.00 37.11 1.40
5729 5979 7.894376 TCTCTTAAAACGAATGGTACGATTT 57.106 32.000 4.49 0.00 38.69 2.17
5730 5980 9.760077 ATATCTCTTAAAACGAATGGTACGATT 57.240 29.630 2.38 2.38 34.70 3.34
5731 5981 9.408069 GATATCTCTTAAAACGAATGGTACGAT 57.592 33.333 0.00 0.00 34.70 3.73
5732 5982 7.588854 CGATATCTCTTAAAACGAATGGTACGA 59.411 37.037 0.34 0.00 34.70 3.43
5733 5983 7.377928 ACGATATCTCTTAAAACGAATGGTACG 59.622 37.037 0.34 0.00 0.00 3.67
5734 5984 8.571461 ACGATATCTCTTAAAACGAATGGTAC 57.429 34.615 0.34 0.00 0.00 3.34
5753 6003 9.178427 GCGTTCTCTAAAAACAGTATACGATAT 57.822 33.333 0.00 0.00 0.00 1.63
5754 6004 8.183536 TGCGTTCTCTAAAAACAGTATACGATA 58.816 33.333 0.00 0.00 0.00 2.92
5755 6005 7.031372 TGCGTTCTCTAAAAACAGTATACGAT 58.969 34.615 0.00 0.00 0.00 3.73
5756 6006 6.380995 TGCGTTCTCTAAAAACAGTATACGA 58.619 36.000 0.00 0.00 0.00 3.43
5757 6007 6.307318 ACTGCGTTCTCTAAAAACAGTATACG 59.693 38.462 0.00 0.00 35.27 3.06
5758 6008 7.578169 ACTGCGTTCTCTAAAAACAGTATAC 57.422 36.000 0.00 0.00 35.27 1.47
5759 6009 8.597662 AAACTGCGTTCTCTAAAAACAGTATA 57.402 30.769 0.00 0.00 35.95 1.47
5760 6010 7.492352 AAACTGCGTTCTCTAAAAACAGTAT 57.508 32.000 0.00 0.00 35.95 2.12
5761 6011 6.913873 AAACTGCGTTCTCTAAAAACAGTA 57.086 33.333 0.00 0.00 35.95 2.74
5762 6012 5.813080 AAACTGCGTTCTCTAAAAACAGT 57.187 34.783 0.00 0.00 38.47 3.55
5763 6013 7.097570 CGTTAAAACTGCGTTCTCTAAAAACAG 60.098 37.037 0.00 0.00 0.00 3.16
5764 6014 6.683708 CGTTAAAACTGCGTTCTCTAAAAACA 59.316 34.615 0.00 0.00 0.00 2.83
5765 6015 6.139638 CCGTTAAAACTGCGTTCTCTAAAAAC 59.860 38.462 0.00 0.00 0.00 2.43
5766 6016 6.193761 CCGTTAAAACTGCGTTCTCTAAAAA 58.806 36.000 0.00 0.00 0.00 1.94
5767 6017 5.740406 CCGTTAAAACTGCGTTCTCTAAAA 58.260 37.500 0.00 0.00 0.00 1.52
5768 6018 4.318974 GCCGTTAAAACTGCGTTCTCTAAA 60.319 41.667 0.00 0.00 29.78 1.85
5769 6019 3.184986 GCCGTTAAAACTGCGTTCTCTAA 59.815 43.478 0.00 0.00 29.78 2.10
5770 6020 2.733026 GCCGTTAAAACTGCGTTCTCTA 59.267 45.455 0.00 0.00 29.78 2.43
5771 6021 1.529865 GCCGTTAAAACTGCGTTCTCT 59.470 47.619 0.00 0.00 29.78 3.10
5772 6022 1.529865 AGCCGTTAAAACTGCGTTCTC 59.470 47.619 4.00 0.00 42.87 2.87
5773 6023 1.589803 AGCCGTTAAAACTGCGTTCT 58.410 45.000 4.00 0.00 42.87 3.01
5774 6024 3.413558 CATAGCCGTTAAAACTGCGTTC 58.586 45.455 4.00 0.00 42.87 3.95
5775 6025 2.413634 GCATAGCCGTTAAAACTGCGTT 60.414 45.455 4.00 0.00 42.87 4.84
5776 6026 1.129811 GCATAGCCGTTAAAACTGCGT 59.870 47.619 4.00 0.00 42.87 5.24
5777 6027 1.396996 AGCATAGCCGTTAAAACTGCG 59.603 47.619 4.00 0.00 42.87 5.18
5778 6028 3.869246 TCTAGCATAGCCGTTAAAACTGC 59.131 43.478 1.47 1.47 38.99 4.40
5779 6029 5.348986 TCTCTAGCATAGCCGTTAAAACTG 58.651 41.667 0.00 0.00 38.99 3.16
5780 6030 5.593679 TCTCTAGCATAGCCGTTAAAACT 57.406 39.130 0.00 0.00 38.99 2.66
5781 6031 5.333416 GCATCTCTAGCATAGCCGTTAAAAC 60.333 44.000 0.00 0.00 38.99 2.43
5782 6032 4.750098 GCATCTCTAGCATAGCCGTTAAAA 59.250 41.667 0.00 0.00 38.99 1.52
5783 6033 4.039245 AGCATCTCTAGCATAGCCGTTAAA 59.961 41.667 0.00 0.00 38.99 1.52
5784 6034 3.574396 AGCATCTCTAGCATAGCCGTTAA 59.426 43.478 0.00 0.00 38.99 2.01
5785 6035 3.157881 AGCATCTCTAGCATAGCCGTTA 58.842 45.455 0.00 0.00 38.99 3.18
5786 6036 1.967066 AGCATCTCTAGCATAGCCGTT 59.033 47.619 0.00 0.00 38.99 4.44
5787 6037 1.543802 GAGCATCTCTAGCATAGCCGT 59.456 52.381 0.00 0.00 38.99 5.68
5788 6038 2.276472 GAGCATCTCTAGCATAGCCG 57.724 55.000 0.00 0.00 38.99 5.52
5801 6051 3.686016 TCCCAAGGTTGTTTAGAGCATC 58.314 45.455 0.00 0.00 0.00 3.91
5802 6052 3.806949 TCCCAAGGTTGTTTAGAGCAT 57.193 42.857 0.00 0.00 0.00 3.79
5803 6053 3.219281 GTTCCCAAGGTTGTTTAGAGCA 58.781 45.455 0.00 0.00 0.00 4.26
5804 6054 3.219281 TGTTCCCAAGGTTGTTTAGAGC 58.781 45.455 0.00 0.00 0.00 4.09
5805 6055 3.821033 CCTGTTCCCAAGGTTGTTTAGAG 59.179 47.826 0.00 0.00 0.00 2.43
5806 6056 3.460340 TCCTGTTCCCAAGGTTGTTTAGA 59.540 43.478 0.00 0.00 0.00 2.10
5807 6057 3.827722 TCCTGTTCCCAAGGTTGTTTAG 58.172 45.455 0.00 0.00 0.00 1.85
5808 6058 3.955524 TCCTGTTCCCAAGGTTGTTTA 57.044 42.857 0.00 0.00 0.00 2.01
5809 6059 2.838637 TCCTGTTCCCAAGGTTGTTT 57.161 45.000 0.00 0.00 0.00 2.83
5810 6060 2.243736 TCTTCCTGTTCCCAAGGTTGTT 59.756 45.455 0.00 0.00 0.00 2.83
5811 6061 1.850345 TCTTCCTGTTCCCAAGGTTGT 59.150 47.619 0.00 0.00 0.00 3.32
5812 6062 2.623416 GTTCTTCCTGTTCCCAAGGTTG 59.377 50.000 0.00 0.00 0.00 3.77
5849 6099 4.160814 ACCTTTGTAGTACAGTGACACACA 59.839 41.667 8.59 0.00 36.74 3.72
5881 6131 1.065854 CCCAGCCTACAAAGACAGAGG 60.066 57.143 0.00 0.00 0.00 3.69
5977 6229 8.594550 GCTAGATTGGATTAGATTGGTAAGGTA 58.405 37.037 0.00 0.00 0.00 3.08
5984 6236 6.171921 CAGGAGCTAGATTGGATTAGATTGG 58.828 44.000 0.00 0.00 0.00 3.16
5988 6240 4.835615 GTCCAGGAGCTAGATTGGATTAGA 59.164 45.833 4.77 0.00 41.41 2.10
5989 6241 4.321601 CGTCCAGGAGCTAGATTGGATTAG 60.322 50.000 4.77 0.00 41.41 1.73
5991 6243 2.366916 CGTCCAGGAGCTAGATTGGATT 59.633 50.000 4.77 0.00 41.41 3.01
5992 6244 1.967066 CGTCCAGGAGCTAGATTGGAT 59.033 52.381 4.77 0.00 41.41 3.41
5993 6245 1.403814 CGTCCAGGAGCTAGATTGGA 58.596 55.000 0.00 0.00 37.38 3.53
5994 6246 0.249657 GCGTCCAGGAGCTAGATTGG 60.250 60.000 0.00 0.00 0.00 3.16
5995 6247 0.749649 AGCGTCCAGGAGCTAGATTG 59.250 55.000 10.72 0.00 42.60 2.67
5996 6248 0.749649 CAGCGTCCAGGAGCTAGATT 59.250 55.000 11.74 0.00 42.52 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.