Multiple sequence alignment - TraesCS5B01G058600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G058600 chr5B 100.000 2264 0 0 1 2264 64293431 64295694 0.000000e+00 4181
1 TraesCS5B01G058600 chr5B 96.684 1779 59 0 1 1779 584816929 584815151 0.000000e+00 2959
2 TraesCS5B01G058600 chr5B 90.742 1793 147 6 1 1779 89726818 89728605 0.000000e+00 2374
3 TraesCS5B01G058600 chr5B 98.758 483 6 0 1782 2264 64302216 64302698 0.000000e+00 859
4 TraesCS5B01G058600 chr5B 98.152 487 8 1 1779 2264 26260165 26260651 0.000000e+00 848
5 TraesCS5B01G058600 chr2A 93.198 1779 110 6 3 1779 48624234 48622465 0.000000e+00 2604
6 TraesCS5B01G058600 chr6B 92.801 1778 120 5 4 1779 281223409 281221638 0.000000e+00 2567
7 TraesCS5B01G058600 chr2D 92.701 1781 117 8 1 1779 632766140 632767909 0.000000e+00 2556
8 TraesCS5B01G058600 chr2D 93.282 1548 94 4 1 1543 476789251 476790793 0.000000e+00 2274
9 TraesCS5B01G058600 chr1D 92.182 1778 128 6 4 1779 14674863 14673095 0.000000e+00 2503
10 TraesCS5B01G058600 chr4A 92.700 1726 119 4 55 1779 564697244 564698963 0.000000e+00 2483
11 TraesCS5B01G058600 chr3A 93.368 1553 95 6 228 1779 497386153 497387698 0.000000e+00 2290
12 TraesCS5B01G058600 chr2B 98.554 484 7 0 1781 2264 795043464 795042981 0.000000e+00 856
13 TraesCS5B01G058600 chr2B 97.368 494 13 0 1771 2264 46638712 46638219 0.000000e+00 841
14 TraesCS5B01G058600 chr3B 98.551 483 7 0 1782 2264 257938264 257937782 0.000000e+00 854
15 TraesCS5B01G058600 chr3B 97.808 365 8 0 1413 1777 760824947 760825311 4.100000e-177 630
16 TraesCS5B01G058600 chrUn 98.351 485 8 0 1780 2264 454838336 454838820 0.000000e+00 852
17 TraesCS5B01G058600 chr7B 98.344 483 8 0 1782 2264 415115257 415115739 0.000000e+00 848
18 TraesCS5B01G058600 chr7B 98.344 483 8 0 1782 2264 434795313 434795795 0.000000e+00 848
19 TraesCS5B01G058600 chr4B 98.344 483 8 0 1782 2264 128466758 128466276 0.000000e+00 848


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G058600 chr5B 64293431 64295694 2263 False 4181 4181 100.000 1 2264 1 chr5B.!!$F2 2263
1 TraesCS5B01G058600 chr5B 584815151 584816929 1778 True 2959 2959 96.684 1 1779 1 chr5B.!!$R1 1778
2 TraesCS5B01G058600 chr5B 89726818 89728605 1787 False 2374 2374 90.742 1 1779 1 chr5B.!!$F4 1778
3 TraesCS5B01G058600 chr2A 48622465 48624234 1769 True 2604 2604 93.198 3 1779 1 chr2A.!!$R1 1776
4 TraesCS5B01G058600 chr6B 281221638 281223409 1771 True 2567 2567 92.801 4 1779 1 chr6B.!!$R1 1775
5 TraesCS5B01G058600 chr2D 632766140 632767909 1769 False 2556 2556 92.701 1 1779 1 chr2D.!!$F2 1778
6 TraesCS5B01G058600 chr2D 476789251 476790793 1542 False 2274 2274 93.282 1 1543 1 chr2D.!!$F1 1542
7 TraesCS5B01G058600 chr1D 14673095 14674863 1768 True 2503 2503 92.182 4 1779 1 chr1D.!!$R1 1775
8 TraesCS5B01G058600 chr4A 564697244 564698963 1719 False 2483 2483 92.700 55 1779 1 chr4A.!!$F1 1724
9 TraesCS5B01G058600 chr3A 497386153 497387698 1545 False 2290 2290 93.368 228 1779 1 chr3A.!!$F1 1551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 775 0.395724 CTAACATTGGAGGGGGCCAC 60.396 60.0 4.39 0.0 37.75 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 2169 0.688487 CCCAAAGTGTTCCTCCGGTA 59.312 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.786311 ACCGCAATACTCAAGTACACTTTA 58.214 37.500 0.00 0.00 33.11 1.85
171 172 4.917415 GCCAAACAACAAGTGATCACATAC 59.083 41.667 27.02 0.33 0.00 2.39
295 296 2.673523 GCCAGTGTGAGAGGCCAT 59.326 61.111 5.01 0.00 42.58 4.40
396 397 3.891324 GCGGTTGCACAAGTTTACATTA 58.109 40.909 0.00 0.00 42.15 1.90
564 565 3.070734 GTGACATGGATGATCTAGCTGGT 59.929 47.826 0.00 0.00 0.00 4.00
751 755 2.276740 GTGGCCATGGAGGAAGGG 59.723 66.667 18.40 0.00 41.22 3.95
755 759 1.645402 GGCCATGGAGGAAGGGCTAA 61.645 60.000 18.40 0.00 45.68 3.09
757 761 0.918983 CCATGGAGGAAGGGCTAACA 59.081 55.000 5.56 0.00 41.22 2.41
771 775 0.395724 CTAACATTGGAGGGGGCCAC 60.396 60.000 4.39 0.00 37.75 5.01
773 777 3.727258 CATTGGAGGGGGCCACGA 61.727 66.667 4.39 0.00 37.75 4.35
944 955 6.930164 TCATGCATTTGTTGATATATTTGCCC 59.070 34.615 0.00 0.00 0.00 5.36
1032 1043 0.539438 GTTCCATGACAAGGCCACCA 60.539 55.000 5.01 0.00 0.00 4.17
1081 1092 1.347707 AGTGGAAGGACGCATCTTTGA 59.652 47.619 0.00 0.00 0.00 2.69
1246 1261 3.857052 CTTCCAACTAACGCCTATGACA 58.143 45.455 0.00 0.00 0.00 3.58
1544 1560 1.610327 CTCGTGAGGAGGAGAGGGA 59.390 63.158 0.00 0.00 39.22 4.20
1576 1592 0.607489 AAGAGCTCGCAAGGCACAAT 60.607 50.000 8.37 0.00 36.22 2.71
1578 1594 1.086696 GAGCTCGCAAGGCACAATAA 58.913 50.000 0.00 0.00 36.22 1.40
1779 1805 8.081633 TGTATTGAATTTGGTGTGAAGATGTTC 58.918 33.333 0.00 0.00 0.00 3.18
1780 1806 5.107109 TGAATTTGGTGTGAAGATGTTCG 57.893 39.130 0.00 0.00 35.17 3.95
1781 1807 4.578516 TGAATTTGGTGTGAAGATGTTCGT 59.421 37.500 0.00 0.00 35.17 3.85
1782 1808 3.961477 TTTGGTGTGAAGATGTTCGTG 57.039 42.857 0.00 0.00 35.17 4.35
1783 1809 2.900716 TGGTGTGAAGATGTTCGTGA 57.099 45.000 0.00 0.00 35.17 4.35
1784 1810 3.186702 TGGTGTGAAGATGTTCGTGAA 57.813 42.857 0.00 0.00 35.17 3.18
1785 1811 3.130633 TGGTGTGAAGATGTTCGTGAAG 58.869 45.455 0.00 0.00 35.17 3.02
1786 1812 2.480419 GGTGTGAAGATGTTCGTGAAGG 59.520 50.000 0.00 0.00 35.17 3.46
1787 1813 3.390135 GTGTGAAGATGTTCGTGAAGGA 58.610 45.455 0.00 0.00 35.17 3.36
1788 1814 3.807622 GTGTGAAGATGTTCGTGAAGGAA 59.192 43.478 0.00 0.00 35.17 3.36
1789 1815 4.272504 GTGTGAAGATGTTCGTGAAGGAAA 59.727 41.667 0.00 0.00 35.17 3.13
1790 1816 5.049405 GTGTGAAGATGTTCGTGAAGGAAAT 60.049 40.000 0.00 0.00 35.17 2.17
1791 1817 6.147164 GTGTGAAGATGTTCGTGAAGGAAATA 59.853 38.462 0.00 0.00 35.17 1.40
1792 1818 6.878923 TGTGAAGATGTTCGTGAAGGAAATAT 59.121 34.615 0.00 0.00 35.17 1.28
1793 1819 7.148423 TGTGAAGATGTTCGTGAAGGAAATATG 60.148 37.037 0.00 0.00 35.17 1.78
1794 1820 5.741388 AGATGTTCGTGAAGGAAATATGC 57.259 39.130 0.00 0.00 0.00 3.14
1795 1821 4.576463 AGATGTTCGTGAAGGAAATATGCC 59.424 41.667 0.00 0.00 0.00 4.40
1796 1822 3.013921 TGTTCGTGAAGGAAATATGCCC 58.986 45.455 0.00 0.00 0.00 5.36
1797 1823 3.279434 GTTCGTGAAGGAAATATGCCCT 58.721 45.455 0.00 0.00 0.00 5.19
1798 1824 4.080807 TGTTCGTGAAGGAAATATGCCCTA 60.081 41.667 0.00 0.00 31.36 3.53
1799 1825 4.336889 TCGTGAAGGAAATATGCCCTAG 57.663 45.455 0.00 0.00 31.36 3.02
1800 1826 3.964688 TCGTGAAGGAAATATGCCCTAGA 59.035 43.478 0.00 0.00 31.36 2.43
1801 1827 4.039245 TCGTGAAGGAAATATGCCCTAGAG 59.961 45.833 0.00 0.00 31.36 2.43
1802 1828 4.646572 GTGAAGGAAATATGCCCTAGAGG 58.353 47.826 0.00 0.00 39.47 3.69
1878 1904 9.851686 ATTCATGCTAGAATTGTATTAACCAGA 57.148 29.630 0.00 0.00 34.70 3.86
1879 1905 9.679661 TTCATGCTAGAATTGTATTAACCAGAA 57.320 29.630 0.00 0.00 0.00 3.02
1880 1906 9.679661 TCATGCTAGAATTGTATTAACCAGAAA 57.320 29.630 0.00 0.00 0.00 2.52
1881 1907 9.722056 CATGCTAGAATTGTATTAACCAGAAAC 57.278 33.333 0.00 0.00 0.00 2.78
1882 1908 8.856153 TGCTAGAATTGTATTAACCAGAAACA 57.144 30.769 0.00 0.00 0.00 2.83
1883 1909 9.461312 TGCTAGAATTGTATTAACCAGAAACAT 57.539 29.630 0.00 0.00 0.00 2.71
1884 1910 9.722056 GCTAGAATTGTATTAACCAGAAACATG 57.278 33.333 0.00 0.00 0.00 3.21
1892 1918 9.679661 TGTATTAACCAGAAACATGATACATGT 57.320 29.630 10.94 10.94 0.00 3.21
1893 1919 9.935682 GTATTAACCAGAAACATGATACATGTG 57.064 33.333 16.29 7.59 31.80 3.21
1894 1920 7.994425 TTAACCAGAAACATGATACATGTGT 57.006 32.000 16.29 11.88 31.80 3.72
1895 1921 5.885230 ACCAGAAACATGATACATGTGTG 57.115 39.130 16.29 13.57 31.80 3.82
1896 1922 5.559770 ACCAGAAACATGATACATGTGTGA 58.440 37.500 16.29 0.00 31.80 3.58
1897 1923 6.003326 ACCAGAAACATGATACATGTGTGAA 58.997 36.000 16.29 0.00 31.80 3.18
1898 1924 6.660521 ACCAGAAACATGATACATGTGTGAAT 59.339 34.615 16.29 0.00 31.80 2.57
1899 1925 7.828717 ACCAGAAACATGATACATGTGTGAATA 59.171 33.333 16.29 0.00 31.80 1.75
1900 1926 8.124823 CCAGAAACATGATACATGTGTGAATAC 58.875 37.037 16.29 1.56 31.80 1.89
1901 1927 8.667463 CAGAAACATGATACATGTGTGAATACA 58.333 33.333 16.29 0.00 34.63 2.29
1902 1928 9.399797 AGAAACATGATACATGTGTGAATACAT 57.600 29.630 16.29 0.00 41.77 2.29
1906 1932 9.481340 ACATGATACATGTGTGAATACATAGAC 57.519 33.333 15.11 0.00 39.17 2.59
1907 1933 9.480053 CATGATACATGTGTGAATACATAGACA 57.520 33.333 9.11 0.00 39.17 3.41
1909 1935 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
1911 1937 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
1912 1938 8.565896 ACATGTGTGAATACATAGACAAACAT 57.434 30.769 0.00 0.00 40.42 2.71
1913 1939 9.665719 ACATGTGTGAATACATAGACAAACATA 57.334 29.630 0.00 0.00 38.58 2.29
1929 1955 8.361139 AGACAAACATATAGTCACTAGTATGCC 58.639 37.037 0.00 0.00 34.80 4.40
1930 1956 8.251383 ACAAACATATAGTCACTAGTATGCCT 57.749 34.615 0.00 0.00 0.00 4.75
1931 1957 8.361139 ACAAACATATAGTCACTAGTATGCCTC 58.639 37.037 0.00 0.00 0.00 4.70
1932 1958 8.580720 CAAACATATAGTCACTAGTATGCCTCT 58.419 37.037 0.00 0.00 0.00 3.69
1933 1959 9.809395 AAACATATAGTCACTAGTATGCCTCTA 57.191 33.333 0.00 0.00 0.00 2.43
1934 1960 8.795842 ACATATAGTCACTAGTATGCCTCTAC 57.204 38.462 0.00 0.00 0.00 2.59
1935 1961 8.607713 ACATATAGTCACTAGTATGCCTCTACT 58.392 37.037 0.00 0.00 36.04 2.57
1936 1962 9.456147 CATATAGTCACTAGTATGCCTCTACTT 57.544 37.037 0.00 0.00 33.96 2.24
1937 1963 7.753309 ATAGTCACTAGTATGCCTCTACTTG 57.247 40.000 0.00 0.00 33.96 3.16
1938 1964 5.756918 AGTCACTAGTATGCCTCTACTTGA 58.243 41.667 0.00 0.18 33.96 3.02
1939 1965 5.591067 AGTCACTAGTATGCCTCTACTTGAC 59.409 44.000 0.00 11.41 38.55 3.18
1940 1966 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
1941 1967 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
1942 1968 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
1943 1969 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
1944 1970 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
1945 1971 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
1946 1972 3.087370 TGCCTCTACTTGACTAGCTCA 57.913 47.619 0.00 0.00 0.00 4.26
1947 1973 3.636679 TGCCTCTACTTGACTAGCTCAT 58.363 45.455 0.00 0.00 0.00 2.90
1948 1974 4.026744 TGCCTCTACTTGACTAGCTCATT 58.973 43.478 0.00 0.00 0.00 2.57
1949 1975 5.201243 TGCCTCTACTTGACTAGCTCATTA 58.799 41.667 0.00 0.00 0.00 1.90
1950 1976 5.656859 TGCCTCTACTTGACTAGCTCATTAA 59.343 40.000 0.00 0.00 0.00 1.40
1951 1977 6.325028 TGCCTCTACTTGACTAGCTCATTAAT 59.675 38.462 0.00 0.00 0.00 1.40
1952 1978 6.866248 GCCTCTACTTGACTAGCTCATTAATC 59.134 42.308 0.00 0.00 0.00 1.75
1953 1979 7.470702 GCCTCTACTTGACTAGCTCATTAATCA 60.471 40.741 0.00 0.00 0.00 2.57
1954 1980 8.417106 CCTCTACTTGACTAGCTCATTAATCAA 58.583 37.037 0.00 0.00 0.00 2.57
1955 1981 9.809096 CTCTACTTGACTAGCTCATTAATCAAA 57.191 33.333 0.00 0.00 0.00 2.69
1956 1982 9.809096 TCTACTTGACTAGCTCATTAATCAAAG 57.191 33.333 0.00 0.00 0.00 2.77
1957 1983 9.809096 CTACTTGACTAGCTCATTAATCAAAGA 57.191 33.333 0.00 0.00 0.00 2.52
1959 1985 9.107177 ACTTGACTAGCTCATTAATCAAAGATG 57.893 33.333 0.00 0.00 0.00 2.90
1960 1986 8.442632 TTGACTAGCTCATTAATCAAAGATGG 57.557 34.615 0.00 0.00 0.00 3.51
1961 1987 7.568349 TGACTAGCTCATTAATCAAAGATGGT 58.432 34.615 0.00 0.00 0.00 3.55
1962 1988 8.049117 TGACTAGCTCATTAATCAAAGATGGTT 58.951 33.333 0.00 0.00 33.49 3.67
1963 1989 9.547753 GACTAGCTCATTAATCAAAGATGGTTA 57.452 33.333 0.00 0.00 30.84 2.85
1966 1992 8.757982 AGCTCATTAATCAAAGATGGTTATGT 57.242 30.769 0.00 0.00 32.32 2.29
1967 1993 9.193806 AGCTCATTAATCAAAGATGGTTATGTT 57.806 29.630 0.00 0.00 32.32 2.71
1968 1994 9.807649 GCTCATTAATCAAAGATGGTTATGTTT 57.192 29.630 0.00 0.00 32.32 2.83
1975 2001 7.696992 TCAAAGATGGTTATGTTTCCTAACC 57.303 36.000 5.49 5.49 45.53 2.85
1984 2010 8.154649 GGTTATGTTTCCTAACCATAGACATG 57.845 38.462 7.24 0.00 44.95 3.21
1985 2011 7.773690 GGTTATGTTTCCTAACCATAGACATGT 59.226 37.037 0.00 0.00 44.95 3.21
1986 2012 8.612619 GTTATGTTTCCTAACCATAGACATGTG 58.387 37.037 1.15 0.00 30.80 3.21
1987 2013 6.121776 TGTTTCCTAACCATAGACATGTGT 57.878 37.500 1.15 0.22 33.15 3.72
1988 2014 6.539173 TGTTTCCTAACCATAGACATGTGTT 58.461 36.000 1.15 3.14 33.15 3.32
1989 2015 7.001674 TGTTTCCTAACCATAGACATGTGTTT 58.998 34.615 1.15 0.00 33.15 2.83
1990 2016 7.504238 TGTTTCCTAACCATAGACATGTGTTTT 59.496 33.333 1.15 0.00 33.15 2.43
1991 2017 7.681939 TTCCTAACCATAGACATGTGTTTTC 57.318 36.000 1.15 0.00 31.85 2.29
1992 2018 6.774673 TCCTAACCATAGACATGTGTTTTCA 58.225 36.000 1.15 0.00 31.85 2.69
1993 2019 7.402054 TCCTAACCATAGACATGTGTTTTCAT 58.598 34.615 1.15 0.00 31.85 2.57
1994 2020 7.888021 TCCTAACCATAGACATGTGTTTTCATT 59.112 33.333 1.15 0.00 31.85 2.57
1995 2021 8.522830 CCTAACCATAGACATGTGTTTTCATTT 58.477 33.333 1.15 0.00 31.85 2.32
1996 2022 9.345517 CTAACCATAGACATGTGTTTTCATTTG 57.654 33.333 1.15 0.00 31.85 2.32
1997 2023 7.523293 ACCATAGACATGTGTTTTCATTTGA 57.477 32.000 1.15 0.00 0.00 2.69
1998 2024 8.125978 ACCATAGACATGTGTTTTCATTTGAT 57.874 30.769 1.15 0.00 0.00 2.57
1999 2025 8.587608 ACCATAGACATGTGTTTTCATTTGATT 58.412 29.630 1.15 0.00 0.00 2.57
2015 2041 8.667076 TCATTTGATTAATGAGATCACGTCAT 57.333 30.769 0.00 0.00 45.91 3.06
2016 2042 9.112725 TCATTTGATTAATGAGATCACGTCATT 57.887 29.630 11.95 11.95 45.91 2.57
2019 2045 8.593492 TTGATTAATGAGATCACGTCATTAGG 57.407 34.615 12.87 0.00 44.06 2.69
2020 2046 7.951591 TGATTAATGAGATCACGTCATTAGGA 58.048 34.615 12.87 4.14 44.06 2.94
2021 2047 8.084684 TGATTAATGAGATCACGTCATTAGGAG 58.915 37.037 12.87 0.00 44.06 3.69
2022 2048 7.582667 TTAATGAGATCACGTCATTAGGAGA 57.417 36.000 12.87 1.00 44.06 3.71
2023 2049 6.471233 AATGAGATCACGTCATTAGGAGAA 57.529 37.500 6.84 0.00 41.79 2.87
2024 2050 6.662865 ATGAGATCACGTCATTAGGAGAAT 57.337 37.500 0.00 0.00 30.03 2.40
2025 2051 5.836347 TGAGATCACGTCATTAGGAGAATG 58.164 41.667 0.00 0.00 0.00 2.67
2026 2052 5.594317 TGAGATCACGTCATTAGGAGAATGA 59.406 40.000 0.00 0.00 34.56 2.57
2027 2053 6.266330 TGAGATCACGTCATTAGGAGAATGAT 59.734 38.462 3.48 0.00 38.71 2.45
2028 2054 6.453943 AGATCACGTCATTAGGAGAATGATG 58.546 40.000 14.88 14.88 44.87 3.07
2034 2060 6.885247 CGTCATTAGGAGAATGATGTGATTG 58.115 40.000 10.14 0.00 38.71 2.67
2035 2061 6.703165 CGTCATTAGGAGAATGATGTGATTGA 59.297 38.462 10.14 0.00 38.71 2.57
2036 2062 7.307042 CGTCATTAGGAGAATGATGTGATTGAC 60.307 40.741 10.14 0.00 38.71 3.18
2037 2063 7.496920 GTCATTAGGAGAATGATGTGATTGACA 59.503 37.037 3.48 0.00 38.71 3.58
2039 2065 7.797038 TTAGGAGAATGATGTGATTGACATG 57.203 36.000 0.00 0.00 45.90 3.21
2040 2066 5.997843 AGGAGAATGATGTGATTGACATGA 58.002 37.500 0.00 0.00 45.90 3.07
2041 2067 5.821470 AGGAGAATGATGTGATTGACATGAC 59.179 40.000 0.00 0.00 45.90 3.06
2042 2068 5.008415 GGAGAATGATGTGATTGACATGACC 59.992 44.000 0.00 0.00 45.90 4.02
2043 2069 4.885907 AGAATGATGTGATTGACATGACCC 59.114 41.667 0.00 0.00 45.90 4.46
2044 2070 3.717452 TGATGTGATTGACATGACCCA 57.283 42.857 0.00 0.00 45.90 4.51
2045 2071 4.239428 TGATGTGATTGACATGACCCAT 57.761 40.909 0.00 0.00 45.90 4.00
2046 2072 4.201657 TGATGTGATTGACATGACCCATC 58.798 43.478 0.00 0.00 45.90 3.51
2047 2073 4.080186 TGATGTGATTGACATGACCCATCT 60.080 41.667 0.00 0.00 45.90 2.90
2048 2074 3.877559 TGTGATTGACATGACCCATCTC 58.122 45.455 0.00 0.15 0.00 2.75
2049 2075 2.868583 GTGATTGACATGACCCATCTCG 59.131 50.000 0.00 0.00 0.00 4.04
2050 2076 2.501316 TGATTGACATGACCCATCTCGT 59.499 45.455 0.00 0.00 0.00 4.18
2051 2077 3.055167 TGATTGACATGACCCATCTCGTT 60.055 43.478 0.00 0.00 0.00 3.85
2052 2078 4.161377 TGATTGACATGACCCATCTCGTTA 59.839 41.667 0.00 0.00 0.00 3.18
2053 2079 3.801114 TGACATGACCCATCTCGTTAG 57.199 47.619 0.00 0.00 0.00 2.34
2054 2080 2.159099 TGACATGACCCATCTCGTTAGC 60.159 50.000 0.00 0.00 0.00 3.09
2055 2081 2.101582 GACATGACCCATCTCGTTAGCT 59.898 50.000 0.00 0.00 0.00 3.32
2056 2082 2.501723 ACATGACCCATCTCGTTAGCTT 59.498 45.455 0.00 0.00 0.00 3.74
2057 2083 3.704566 ACATGACCCATCTCGTTAGCTTA 59.295 43.478 0.00 0.00 0.00 3.09
2058 2084 4.202161 ACATGACCCATCTCGTTAGCTTAG 60.202 45.833 0.00 0.00 0.00 2.18
2059 2085 2.100916 TGACCCATCTCGTTAGCTTAGC 59.899 50.000 0.00 0.00 0.00 3.09
2060 2086 2.100916 GACCCATCTCGTTAGCTTAGCA 59.899 50.000 7.07 0.00 0.00 3.49
2061 2087 2.159085 ACCCATCTCGTTAGCTTAGCAC 60.159 50.000 7.07 0.00 0.00 4.40
2062 2088 2.101582 CCCATCTCGTTAGCTTAGCACT 59.898 50.000 7.07 0.00 0.00 4.40
2063 2089 3.430929 CCCATCTCGTTAGCTTAGCACTT 60.431 47.826 7.07 0.00 0.00 3.16
2064 2090 3.553511 CCATCTCGTTAGCTTAGCACTTG 59.446 47.826 7.07 0.00 0.00 3.16
2065 2091 4.424626 CATCTCGTTAGCTTAGCACTTGA 58.575 43.478 7.07 0.00 0.00 3.02
2066 2092 4.720649 TCTCGTTAGCTTAGCACTTGAT 57.279 40.909 7.07 0.00 0.00 2.57
2067 2093 4.673441 TCTCGTTAGCTTAGCACTTGATC 58.327 43.478 7.07 0.00 0.00 2.92
2068 2094 3.435566 TCGTTAGCTTAGCACTTGATCG 58.564 45.455 7.07 1.72 0.00 3.69
2069 2095 3.119602 TCGTTAGCTTAGCACTTGATCGT 60.120 43.478 7.07 0.00 0.00 3.73
2070 2096 3.612860 CGTTAGCTTAGCACTTGATCGTT 59.387 43.478 7.07 0.00 0.00 3.85
2071 2097 4.091509 CGTTAGCTTAGCACTTGATCGTTT 59.908 41.667 7.07 0.00 0.00 3.60
2072 2098 5.287752 CGTTAGCTTAGCACTTGATCGTTTA 59.712 40.000 7.07 0.00 0.00 2.01
2073 2099 6.506513 CGTTAGCTTAGCACTTGATCGTTTAG 60.507 42.308 7.07 0.00 0.00 1.85
2074 2100 4.822026 AGCTTAGCACTTGATCGTTTAGT 58.178 39.130 7.07 0.00 0.00 2.24
2075 2101 5.962433 AGCTTAGCACTTGATCGTTTAGTA 58.038 37.500 7.07 0.00 0.00 1.82
2076 2102 6.574350 AGCTTAGCACTTGATCGTTTAGTAT 58.426 36.000 7.07 0.00 0.00 2.12
2077 2103 7.042335 AGCTTAGCACTTGATCGTTTAGTATT 58.958 34.615 7.07 0.00 0.00 1.89
2078 2104 7.222999 AGCTTAGCACTTGATCGTTTAGTATTC 59.777 37.037 7.07 0.00 0.00 1.75
2079 2105 7.222999 GCTTAGCACTTGATCGTTTAGTATTCT 59.777 37.037 0.00 0.00 0.00 2.40
2080 2106 6.893958 AGCACTTGATCGTTTAGTATTCTG 57.106 37.500 0.00 0.00 0.00 3.02
2081 2107 5.292101 AGCACTTGATCGTTTAGTATTCTGC 59.708 40.000 0.00 0.00 0.00 4.26
2082 2108 5.292101 GCACTTGATCGTTTAGTATTCTGCT 59.708 40.000 0.00 0.00 0.00 4.24
2083 2109 6.475727 GCACTTGATCGTTTAGTATTCTGCTA 59.524 38.462 0.00 0.00 0.00 3.49
2084 2110 7.169982 GCACTTGATCGTTTAGTATTCTGCTAT 59.830 37.037 0.00 0.00 0.00 2.97
2085 2111 9.035607 CACTTGATCGTTTAGTATTCTGCTATT 57.964 33.333 0.00 0.00 0.00 1.73
2086 2112 9.035607 ACTTGATCGTTTAGTATTCTGCTATTG 57.964 33.333 0.00 0.00 0.00 1.90
2087 2113 7.408132 TGATCGTTTAGTATTCTGCTATTGC 57.592 36.000 0.00 0.00 40.20 3.56
2088 2114 7.210174 TGATCGTTTAGTATTCTGCTATTGCT 58.790 34.615 0.00 0.00 40.48 3.91
2089 2115 7.710907 TGATCGTTTAGTATTCTGCTATTGCTT 59.289 33.333 0.00 0.00 40.48 3.91
2090 2116 7.843490 TCGTTTAGTATTCTGCTATTGCTTT 57.157 32.000 0.00 0.00 40.48 3.51
2091 2117 7.906160 TCGTTTAGTATTCTGCTATTGCTTTC 58.094 34.615 0.00 0.00 40.48 2.62
2092 2118 7.764443 TCGTTTAGTATTCTGCTATTGCTTTCT 59.236 33.333 0.00 0.00 40.48 2.52
2093 2119 8.391106 CGTTTAGTATTCTGCTATTGCTTTCTT 58.609 33.333 0.00 0.00 40.48 2.52
2094 2120 9.709600 GTTTAGTATTCTGCTATTGCTTTCTTC 57.290 33.333 0.00 0.00 40.48 2.87
2095 2121 9.448438 TTTAGTATTCTGCTATTGCTTTCTTCA 57.552 29.630 0.00 0.00 40.48 3.02
2096 2122 9.618890 TTAGTATTCTGCTATTGCTTTCTTCAT 57.381 29.630 0.00 0.00 40.48 2.57
2097 2123 7.928103 AGTATTCTGCTATTGCTTTCTTCATG 58.072 34.615 0.00 0.00 40.48 3.07
2098 2124 7.772292 AGTATTCTGCTATTGCTTTCTTCATGA 59.228 33.333 0.00 0.00 40.48 3.07
2099 2125 5.808042 TCTGCTATTGCTTTCTTCATGAC 57.192 39.130 0.00 0.00 40.48 3.06
2100 2126 5.494724 TCTGCTATTGCTTTCTTCATGACT 58.505 37.500 0.00 0.00 40.48 3.41
2101 2127 5.942236 TCTGCTATTGCTTTCTTCATGACTT 59.058 36.000 0.00 0.00 40.48 3.01
2102 2128 7.105588 TCTGCTATTGCTTTCTTCATGACTTA 58.894 34.615 0.00 0.00 40.48 2.24
2103 2129 7.772292 TCTGCTATTGCTTTCTTCATGACTTAT 59.228 33.333 0.00 0.00 40.48 1.73
2104 2130 8.962884 TGCTATTGCTTTCTTCATGACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
2105 2131 8.830580 TGCTATTGCTTTCTTCATGACTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
2106 2132 8.830580 GCTATTGCTTTCTTCATGACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
2109 2135 8.565896 TTGCTTTCTTCATGACTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
2110 2136 8.565896 TGCTTTCTTCATGACTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
2111 2137 8.668353 TGCTTTCTTCATGACTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
2112 2138 8.125448 GCTTTCTTCATGACTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
2113 2139 9.388506 CTTTCTTCATGACTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
2114 2140 8.722480 TTCTTCATGACTTATACATGTTCCTG 57.278 34.615 2.30 0.00 43.56 3.86
2115 2141 7.851228 TCTTCATGACTTATACATGTTCCTGT 58.149 34.615 2.30 0.00 43.56 4.00
2116 2142 8.977412 TCTTCATGACTTATACATGTTCCTGTA 58.023 33.333 2.30 0.00 43.56 2.74
2117 2143 9.599866 CTTCATGACTTATACATGTTCCTGTAA 57.400 33.333 2.30 0.00 43.56 2.41
2118 2144 8.942338 TCATGACTTATACATGTTCCTGTAAC 57.058 34.615 2.30 0.00 43.56 2.50
2119 2145 8.758829 TCATGACTTATACATGTTCCTGTAACT 58.241 33.333 2.30 0.00 43.56 2.24
2132 2158 8.662781 TGTTCCTGTAACTATGAGAATTATGC 57.337 34.615 0.00 0.00 38.99 3.14
2133 2159 8.264347 TGTTCCTGTAACTATGAGAATTATGCA 58.736 33.333 0.00 0.00 38.99 3.96
2134 2160 9.109393 GTTCCTGTAACTATGAGAATTATGCAA 57.891 33.333 0.00 0.00 35.05 4.08
2135 2161 8.662781 TCCTGTAACTATGAGAATTATGCAAC 57.337 34.615 0.00 0.00 0.00 4.17
2136 2162 8.486210 TCCTGTAACTATGAGAATTATGCAACT 58.514 33.333 0.00 0.00 0.00 3.16
2137 2163 8.768955 CCTGTAACTATGAGAATTATGCAACTC 58.231 37.037 0.00 0.00 0.00 3.01
2138 2164 8.662781 TGTAACTATGAGAATTATGCAACTCC 57.337 34.615 0.00 0.00 0.00 3.85
2139 2165 7.715249 TGTAACTATGAGAATTATGCAACTCCC 59.285 37.037 0.00 0.00 0.00 4.30
2140 2166 5.300752 ACTATGAGAATTATGCAACTCCCG 58.699 41.667 0.00 0.00 0.00 5.14
2141 2167 3.627395 TGAGAATTATGCAACTCCCGT 57.373 42.857 0.00 0.00 0.00 5.28
2142 2168 3.950397 TGAGAATTATGCAACTCCCGTT 58.050 40.909 0.00 0.00 0.00 4.44
2143 2169 4.331968 TGAGAATTATGCAACTCCCGTTT 58.668 39.130 0.00 0.00 0.00 3.60
2144 2170 5.492895 TGAGAATTATGCAACTCCCGTTTA 58.507 37.500 0.00 0.00 0.00 2.01
2145 2171 5.353123 TGAGAATTATGCAACTCCCGTTTAC 59.647 40.000 0.00 0.00 0.00 2.01
2146 2172 4.638865 AGAATTATGCAACTCCCGTTTACC 59.361 41.667 0.00 0.00 0.00 2.85
2147 2173 2.012937 TATGCAACTCCCGTTTACCG 57.987 50.000 0.00 0.00 0.00 4.02
2165 2191 1.804601 CGGAGGAACACTTTGGGTAC 58.195 55.000 0.00 0.00 0.00 3.34
2166 2192 1.346722 CGGAGGAACACTTTGGGTACT 59.653 52.381 0.00 0.00 0.00 2.73
2167 2193 2.564062 CGGAGGAACACTTTGGGTACTA 59.436 50.000 0.00 0.00 0.00 1.82
2168 2194 3.615834 CGGAGGAACACTTTGGGTACTAC 60.616 52.174 0.00 0.00 0.00 2.73
2169 2195 3.307269 GGAGGAACACTTTGGGTACTACC 60.307 52.174 0.00 0.00 37.60 3.18
2170 2196 3.320129 AGGAACACTTTGGGTACTACCA 58.680 45.455 7.57 0.00 41.02 3.25
2178 2204 2.818130 TGGGTACTACCAAACGTCAC 57.182 50.000 7.57 0.00 41.02 3.67
2179 2205 2.037901 TGGGTACTACCAAACGTCACA 58.962 47.619 7.57 0.00 41.02 3.58
2180 2206 2.433604 TGGGTACTACCAAACGTCACAA 59.566 45.455 7.57 0.00 41.02 3.33
2181 2207 2.802247 GGGTACTACCAAACGTCACAAC 59.198 50.000 7.57 0.00 41.02 3.32
2182 2208 2.472488 GGTACTACCAAACGTCACAACG 59.528 50.000 0.00 0.00 45.77 4.10
2191 2217 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
2192 2218 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
2193 2219 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
2194 2220 2.762745 GTCACAACGTAACTGGGTGAT 58.237 47.619 0.00 0.00 40.23 3.06
2195 2221 3.135994 GTCACAACGTAACTGGGTGATT 58.864 45.455 0.00 0.00 40.23 2.57
2196 2222 4.309099 GTCACAACGTAACTGGGTGATTA 58.691 43.478 0.00 0.00 40.23 1.75
2197 2223 4.933400 GTCACAACGTAACTGGGTGATTAT 59.067 41.667 0.00 0.00 40.23 1.28
2198 2224 6.101332 GTCACAACGTAACTGGGTGATTATA 58.899 40.000 0.00 0.00 40.23 0.98
2199 2225 6.591062 GTCACAACGTAACTGGGTGATTATAA 59.409 38.462 0.00 0.00 40.23 0.98
2200 2226 7.118101 GTCACAACGTAACTGGGTGATTATAAA 59.882 37.037 0.00 0.00 40.23 1.40
2201 2227 7.332430 TCACAACGTAACTGGGTGATTATAAAG 59.668 37.037 0.00 0.00 33.88 1.85
2202 2228 6.596497 ACAACGTAACTGGGTGATTATAAAGG 59.404 38.462 0.00 0.00 0.00 3.11
2203 2229 6.549433 ACGTAACTGGGTGATTATAAAGGA 57.451 37.500 0.00 0.00 0.00 3.36
2204 2230 6.579865 ACGTAACTGGGTGATTATAAAGGAG 58.420 40.000 0.00 0.00 0.00 3.69
2205 2231 6.155737 ACGTAACTGGGTGATTATAAAGGAGT 59.844 38.462 0.00 0.00 0.00 3.85
2206 2232 7.342799 ACGTAACTGGGTGATTATAAAGGAGTA 59.657 37.037 0.00 0.00 0.00 2.59
2207 2233 7.650903 CGTAACTGGGTGATTATAAAGGAGTAC 59.349 40.741 0.00 0.00 0.00 2.73
2208 2234 7.750947 AACTGGGTGATTATAAAGGAGTACT 57.249 36.000 0.00 0.00 0.00 2.73
2209 2235 8.849543 AACTGGGTGATTATAAAGGAGTACTA 57.150 34.615 0.00 0.00 0.00 1.82
2210 2236 8.247666 ACTGGGTGATTATAAAGGAGTACTAC 57.752 38.462 0.00 0.00 0.00 2.73
2211 2237 7.842743 ACTGGGTGATTATAAAGGAGTACTACA 59.157 37.037 8.10 0.00 0.00 2.74
2212 2238 8.246430 TGGGTGATTATAAAGGAGTACTACAG 57.754 38.462 8.10 0.00 0.00 2.74
2213 2239 7.289317 TGGGTGATTATAAAGGAGTACTACAGG 59.711 40.741 8.10 0.00 0.00 4.00
2214 2240 7.289549 GGGTGATTATAAAGGAGTACTACAGGT 59.710 40.741 8.10 0.00 0.00 4.00
2215 2241 8.142551 GGTGATTATAAAGGAGTACTACAGGTG 58.857 40.741 8.10 0.00 0.00 4.00
2216 2242 8.693625 GTGATTATAAAGGAGTACTACAGGTGT 58.306 37.037 8.10 0.00 0.00 4.16
2217 2243 8.910944 TGATTATAAAGGAGTACTACAGGTGTC 58.089 37.037 8.10 0.00 0.00 3.67
2218 2244 9.134055 GATTATAAAGGAGTACTACAGGTGTCT 57.866 37.037 8.10 0.00 0.00 3.41
2219 2245 8.517062 TTATAAAGGAGTACTACAGGTGTCTC 57.483 38.462 8.10 0.00 33.19 3.36
2220 2246 3.369242 AGGAGTACTACAGGTGTCTCC 57.631 52.381 8.10 7.27 43.60 3.71
2221 2247 2.648304 AGGAGTACTACAGGTGTCTCCA 59.352 50.000 8.10 0.00 44.58 3.86
2222 2248 3.075582 AGGAGTACTACAGGTGTCTCCAA 59.924 47.826 8.10 0.00 44.58 3.53
2223 2249 3.830755 GGAGTACTACAGGTGTCTCCAAA 59.169 47.826 0.00 0.00 43.21 3.28
2224 2250 4.082136 GGAGTACTACAGGTGTCTCCAAAG 60.082 50.000 0.00 0.00 43.21 2.77
2225 2251 3.833070 AGTACTACAGGTGTCTCCAAAGG 59.167 47.826 0.00 0.00 39.02 3.11
2226 2252 2.690840 ACTACAGGTGTCTCCAAAGGT 58.309 47.619 0.00 0.00 39.02 3.50
2227 2253 3.853207 ACTACAGGTGTCTCCAAAGGTA 58.147 45.455 0.00 0.00 39.02 3.08
2228 2254 3.577415 ACTACAGGTGTCTCCAAAGGTAC 59.423 47.826 0.00 0.00 39.02 3.34
2229 2255 2.404559 ACAGGTGTCTCCAAAGGTACA 58.595 47.619 0.00 0.00 39.02 2.90
2230 2256 2.979678 ACAGGTGTCTCCAAAGGTACAT 59.020 45.455 0.00 0.00 39.02 2.29
2231 2257 3.244561 ACAGGTGTCTCCAAAGGTACATG 60.245 47.826 0.00 0.00 39.02 3.21
2232 2258 2.979678 AGGTGTCTCCAAAGGTACATGT 59.020 45.455 2.69 2.69 39.02 3.21
2233 2259 3.394606 AGGTGTCTCCAAAGGTACATGTT 59.605 43.478 2.30 0.00 39.02 2.71
2234 2260 3.502211 GGTGTCTCCAAAGGTACATGTTG 59.498 47.826 2.30 0.00 35.97 3.33
2235 2261 4.385825 GTGTCTCCAAAGGTACATGTTGA 58.614 43.478 2.30 0.00 0.00 3.18
2236 2262 4.452455 GTGTCTCCAAAGGTACATGTTGAG 59.548 45.833 2.30 0.00 0.00 3.02
2237 2263 4.102524 TGTCTCCAAAGGTACATGTTGAGT 59.897 41.667 2.30 0.00 0.00 3.41
2238 2264 5.063880 GTCTCCAAAGGTACATGTTGAGTT 58.936 41.667 2.30 0.00 0.00 3.01
2239 2265 5.049405 GTCTCCAAAGGTACATGTTGAGTTG 60.049 44.000 2.30 4.45 0.00 3.16
2240 2266 4.141287 TCCAAAGGTACATGTTGAGTTGG 58.859 43.478 18.16 18.16 36.44 3.77
2241 2267 3.305335 CCAAAGGTACATGTTGAGTTGGC 60.305 47.826 2.30 0.00 0.00 4.52
2242 2268 1.808411 AGGTACATGTTGAGTTGGCG 58.192 50.000 2.30 0.00 0.00 5.69
2243 2269 1.071699 AGGTACATGTTGAGTTGGCGT 59.928 47.619 2.30 0.00 0.00 5.68
2244 2270 2.300723 AGGTACATGTTGAGTTGGCGTA 59.699 45.455 2.30 0.00 0.00 4.42
2245 2271 3.055385 AGGTACATGTTGAGTTGGCGTAT 60.055 43.478 2.30 0.00 0.00 3.06
2246 2272 3.687698 GGTACATGTTGAGTTGGCGTATT 59.312 43.478 2.30 0.00 0.00 1.89
2247 2273 4.155280 GGTACATGTTGAGTTGGCGTATTT 59.845 41.667 2.30 0.00 0.00 1.40
2248 2274 4.419522 ACATGTTGAGTTGGCGTATTTC 57.580 40.909 0.00 0.00 0.00 2.17
2249 2275 3.120338 ACATGTTGAGTTGGCGTATTTCG 60.120 43.478 0.00 0.00 43.12 3.46
2250 2276 2.756829 TGTTGAGTTGGCGTATTTCGA 58.243 42.857 0.00 0.00 42.86 3.71
2251 2277 2.734606 TGTTGAGTTGGCGTATTTCGAG 59.265 45.455 0.00 0.00 42.86 4.04
2252 2278 2.991190 GTTGAGTTGGCGTATTTCGAGA 59.009 45.455 0.00 0.00 42.86 4.04
2253 2279 3.520290 TGAGTTGGCGTATTTCGAGAT 57.480 42.857 0.00 0.00 42.86 2.75
2254 2280 3.857052 TGAGTTGGCGTATTTCGAGATT 58.143 40.909 0.00 0.00 42.86 2.40
2255 2281 5.001237 TGAGTTGGCGTATTTCGAGATTA 57.999 39.130 0.00 0.00 42.86 1.75
2256 2282 5.041287 TGAGTTGGCGTATTTCGAGATTAG 58.959 41.667 0.00 0.00 42.86 1.73
2257 2283 4.369182 AGTTGGCGTATTTCGAGATTAGG 58.631 43.478 0.00 0.00 42.86 2.69
2258 2284 4.117685 GTTGGCGTATTTCGAGATTAGGT 58.882 43.478 0.00 0.00 42.86 3.08
2259 2285 4.395959 TGGCGTATTTCGAGATTAGGTT 57.604 40.909 0.00 0.00 42.86 3.50
2260 2286 4.761975 TGGCGTATTTCGAGATTAGGTTT 58.238 39.130 0.00 0.00 42.86 3.27
2261 2287 5.180271 TGGCGTATTTCGAGATTAGGTTTT 58.820 37.500 0.00 0.00 42.86 2.43
2262 2288 5.064198 TGGCGTATTTCGAGATTAGGTTTTG 59.936 40.000 0.00 0.00 42.86 2.44
2263 2289 5.064325 GGCGTATTTCGAGATTAGGTTTTGT 59.936 40.000 0.00 0.00 42.86 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.059787 AGGAAGTACTCATTGAGCTTGATT 57.940 37.500 13.64 2.29 32.04 2.57
144 145 3.698539 TGATCACTTGTTGTTTGGCAGAA 59.301 39.130 0.00 0.00 0.00 3.02
272 273 0.037303 CCTCTCACACTGGCACCAAT 59.963 55.000 0.00 0.00 0.00 3.16
295 296 4.199310 GAGCAAGGCCAATGATACTTGTA 58.801 43.478 5.01 0.00 41.65 2.41
396 397 1.931172 CACGTCAACCTTGTTCGTTCT 59.069 47.619 0.00 0.00 37.56 3.01
564 565 4.321601 CCAAATTGCTTCATTCCGGTGTAA 60.322 41.667 0.00 0.00 0.00 2.41
714 718 1.384082 GCCCCCTCCAAGGCTACTA 60.384 63.158 0.00 0.00 46.14 1.82
751 755 1.455773 GGCCCCCTCCAATGTTAGC 60.456 63.158 0.00 0.00 0.00 3.09
755 759 4.047125 CGTGGCCCCCTCCAATGT 62.047 66.667 0.00 0.00 37.96 2.71
757 761 3.728373 GTCGTGGCCCCCTCCAAT 61.728 66.667 0.00 0.00 37.96 3.16
771 775 0.679002 TAGTCCTTCCTCCACGGTCG 60.679 60.000 0.00 0.00 0.00 4.79
773 777 0.971447 GCTAGTCCTTCCTCCACGGT 60.971 60.000 0.00 0.00 0.00 4.83
927 938 7.962995 TGTAAAGGGGCAAATATATCAACAA 57.037 32.000 0.00 0.00 0.00 2.83
944 955 9.859427 AAATATGAACACATTGACATGTAAAGG 57.141 29.630 6.04 6.04 42.14 3.11
1032 1043 2.865119 TGTCTTCATGGTGAGCACAT 57.135 45.000 2.75 0.00 0.00 3.21
1081 1092 3.395941 ACATCCTTCTCCTTCACCTTGTT 59.604 43.478 0.00 0.00 0.00 2.83
1246 1261 2.958818 TCTCTAGCATACCGGTGGAAT 58.041 47.619 19.93 0.00 31.64 3.01
1576 1592 2.560981 TGTCACGTGCTTCATCCTCTTA 59.439 45.455 11.67 0.00 0.00 2.10
1578 1594 0.969149 TGTCACGTGCTTCATCCTCT 59.031 50.000 11.67 0.00 0.00 3.69
1779 1805 4.310769 CTCTAGGGCATATTTCCTTCACG 58.689 47.826 0.00 0.00 34.75 4.35
1780 1806 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
1781 1807 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
1852 1878 9.851686 TCTGGTTAATACAATTCTAGCATGAAT 57.148 29.630 0.00 0.00 38.19 2.57
1853 1879 9.679661 TTCTGGTTAATACAATTCTAGCATGAA 57.320 29.630 0.00 0.00 0.00 2.57
1854 1880 9.679661 TTTCTGGTTAATACAATTCTAGCATGA 57.320 29.630 0.00 0.00 0.00 3.07
1855 1881 9.722056 GTTTCTGGTTAATACAATTCTAGCATG 57.278 33.333 0.00 0.00 0.00 4.06
1856 1882 9.461312 TGTTTCTGGTTAATACAATTCTAGCAT 57.539 29.630 0.00 0.00 0.00 3.79
1857 1883 8.856153 TGTTTCTGGTTAATACAATTCTAGCA 57.144 30.769 0.00 0.00 0.00 3.49
1858 1884 9.722056 CATGTTTCTGGTTAATACAATTCTAGC 57.278 33.333 0.00 0.00 0.00 3.42
1866 1892 9.679661 ACATGTATCATGTTTCTGGTTAATACA 57.320 29.630 9.21 0.00 34.10 2.29
1867 1893 9.935682 CACATGTATCATGTTTCTGGTTAATAC 57.064 33.333 11.89 0.00 0.00 1.89
1868 1894 9.679661 ACACATGTATCATGTTTCTGGTTAATA 57.320 29.630 11.89 0.00 0.00 0.98
1869 1895 8.461222 CACACATGTATCATGTTTCTGGTTAAT 58.539 33.333 11.89 0.00 0.00 1.40
1870 1896 7.663493 TCACACATGTATCATGTTTCTGGTTAA 59.337 33.333 11.89 0.00 0.00 2.01
1871 1897 7.164803 TCACACATGTATCATGTTTCTGGTTA 58.835 34.615 11.89 0.00 0.00 2.85
1872 1898 6.003326 TCACACATGTATCATGTTTCTGGTT 58.997 36.000 11.89 0.00 0.00 3.67
1873 1899 5.559770 TCACACATGTATCATGTTTCTGGT 58.440 37.500 11.89 5.17 0.00 4.00
1874 1900 6.499234 TTCACACATGTATCATGTTTCTGG 57.501 37.500 11.89 4.63 0.00 3.86
1875 1901 8.667463 TGTATTCACACATGTATCATGTTTCTG 58.333 33.333 11.89 8.44 0.00 3.02
1876 1902 8.791327 TGTATTCACACATGTATCATGTTTCT 57.209 30.769 11.89 0.00 0.00 2.52
1880 1906 9.481340 GTCTATGTATTCACACATGTATCATGT 57.519 33.333 9.21 9.21 39.46 3.21
1881 1907 9.480053 TGTCTATGTATTCACACATGTATCATG 57.520 33.333 0.00 7.99 39.46 3.07
1883 1909 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
1885 1911 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
1886 1912 9.665719 ATGTTTGTCTATGTATTCACACATGTA 57.334 29.630 0.00 0.00 39.46 2.29
1887 1913 7.977789 TGTTTGTCTATGTATTCACACATGT 57.022 32.000 0.00 0.00 39.46 3.21
1903 1929 8.361139 GGCATACTAGTGACTATATGTTTGTCT 58.639 37.037 5.39 0.00 0.00 3.41
1904 1930 8.361139 AGGCATACTAGTGACTATATGTTTGTC 58.639 37.037 5.39 9.19 35.12 3.18
1905 1931 8.251383 AGGCATACTAGTGACTATATGTTTGT 57.749 34.615 5.39 4.64 35.12 2.83
1906 1932 8.580720 AGAGGCATACTAGTGACTATATGTTTG 58.419 37.037 5.39 8.91 37.66 2.93
1907 1933 8.713708 AGAGGCATACTAGTGACTATATGTTT 57.286 34.615 5.39 9.60 37.66 2.83
1908 1934 9.233649 GTAGAGGCATACTAGTGACTATATGTT 57.766 37.037 5.39 9.81 37.66 2.71
1909 1935 8.607713 AGTAGAGGCATACTAGTGACTATATGT 58.392 37.037 5.39 6.23 37.66 2.29
1910 1936 9.456147 AAGTAGAGGCATACTAGTGACTATATG 57.544 37.037 5.39 13.19 37.66 1.78
1911 1937 9.456147 CAAGTAGAGGCATACTAGTGACTATAT 57.544 37.037 5.39 0.00 37.66 0.86
1912 1938 8.657712 TCAAGTAGAGGCATACTAGTGACTATA 58.342 37.037 5.39 0.00 37.66 1.31
1913 1939 7.446013 GTCAAGTAGAGGCATACTAGTGACTAT 59.554 40.741 18.18 0.00 37.66 2.12
1914 1940 6.766944 GTCAAGTAGAGGCATACTAGTGACTA 59.233 42.308 18.18 0.00 37.66 2.59
1915 1941 5.591067 GTCAAGTAGAGGCATACTAGTGACT 59.409 44.000 18.18 0.00 41.12 3.41
1916 1942 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
1917 1943 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
1918 1944 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
1919 1945 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
1920 1946 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
1921 1947 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
1922 1948 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
1923 1949 4.580995 TGAGCTAGTCAAGTAGAGGCATAC 59.419 45.833 0.00 0.00 29.64 2.39
1924 1950 4.793201 TGAGCTAGTCAAGTAGAGGCATA 58.207 43.478 0.00 0.00 29.64 3.14
1925 1951 3.636679 TGAGCTAGTCAAGTAGAGGCAT 58.363 45.455 0.00 0.00 29.64 4.40
1926 1952 3.087370 TGAGCTAGTCAAGTAGAGGCA 57.913 47.619 0.00 0.00 29.64 4.75
1927 1953 4.664150 AATGAGCTAGTCAAGTAGAGGC 57.336 45.455 0.00 0.00 39.19 4.70
1928 1954 7.946207 TGATTAATGAGCTAGTCAAGTAGAGG 58.054 38.462 0.00 0.00 39.19 3.69
1929 1955 9.809096 TTTGATTAATGAGCTAGTCAAGTAGAG 57.191 33.333 0.00 0.00 39.19 2.43
1930 1956 9.809096 CTTTGATTAATGAGCTAGTCAAGTAGA 57.191 33.333 0.00 0.00 39.19 2.59
1931 1957 9.809096 TCTTTGATTAATGAGCTAGTCAAGTAG 57.191 33.333 0.00 0.00 39.19 2.57
1933 1959 9.107177 CATCTTTGATTAATGAGCTAGTCAAGT 57.893 33.333 0.00 0.00 39.19 3.16
1934 1960 8.557864 CCATCTTTGATTAATGAGCTAGTCAAG 58.442 37.037 0.00 0.00 39.19 3.02
1935 1961 8.049117 ACCATCTTTGATTAATGAGCTAGTCAA 58.951 33.333 0.00 0.00 39.19 3.18
1936 1962 7.568349 ACCATCTTTGATTAATGAGCTAGTCA 58.432 34.615 0.00 0.00 40.38 3.41
1937 1963 8.443953 AACCATCTTTGATTAATGAGCTAGTC 57.556 34.615 0.00 0.00 0.00 2.59
1940 1966 9.851686 ACATAACCATCTTTGATTAATGAGCTA 57.148 29.630 0.00 0.00 0.00 3.32
1941 1967 8.757982 ACATAACCATCTTTGATTAATGAGCT 57.242 30.769 0.00 0.00 0.00 4.09
1942 1968 9.807649 AAACATAACCATCTTTGATTAATGAGC 57.192 29.630 0.00 0.00 0.00 4.26
1960 1986 8.612619 CACATGTCTATGGTTAGGAAACATAAC 58.387 37.037 0.00 0.00 38.66 1.89
1961 1987 8.325787 ACACATGTCTATGGTTAGGAAACATAA 58.674 33.333 0.00 0.00 38.66 1.90
1962 1988 7.857456 ACACATGTCTATGGTTAGGAAACATA 58.143 34.615 0.00 0.00 38.66 2.29
1963 1989 6.721318 ACACATGTCTATGGTTAGGAAACAT 58.279 36.000 0.00 0.00 38.66 2.71
1964 1990 6.121776 ACACATGTCTATGGTTAGGAAACA 57.878 37.500 0.00 0.00 38.66 2.83
1965 1991 7.448748 AAACACATGTCTATGGTTAGGAAAC 57.551 36.000 0.00 0.00 38.66 2.78
1966 1992 7.721842 TGAAAACACATGTCTATGGTTAGGAAA 59.278 33.333 0.00 0.00 38.66 3.13
1967 1993 7.227873 TGAAAACACATGTCTATGGTTAGGAA 58.772 34.615 0.00 0.00 38.66 3.36
1968 1994 6.774673 TGAAAACACATGTCTATGGTTAGGA 58.225 36.000 0.00 0.00 38.66 2.94
1969 1995 7.630242 ATGAAAACACATGTCTATGGTTAGG 57.370 36.000 0.00 0.00 38.66 2.69
1970 1996 9.345517 CAAATGAAAACACATGTCTATGGTTAG 57.654 33.333 0.00 0.00 38.66 2.34
1971 1997 9.072375 TCAAATGAAAACACATGTCTATGGTTA 57.928 29.630 0.00 0.00 38.66 2.85
1972 1998 7.950512 TCAAATGAAAACACATGTCTATGGTT 58.049 30.769 0.00 0.00 38.66 3.67
1973 1999 7.523293 TCAAATGAAAACACATGTCTATGGT 57.477 32.000 0.00 0.00 38.66 3.55
1974 2000 8.991243 AATCAAATGAAAACACATGTCTATGG 57.009 30.769 0.00 0.00 38.66 2.74
1993 2019 9.045223 CCTAATGACGTGATCTCATTAATCAAA 57.955 33.333 13.75 0.00 39.18 2.69
1994 2020 8.421002 TCCTAATGACGTGATCTCATTAATCAA 58.579 33.333 13.75 0.00 39.18 2.57
1995 2021 7.951591 TCCTAATGACGTGATCTCATTAATCA 58.048 34.615 13.75 2.79 39.18 2.57
1996 2022 8.300286 TCTCCTAATGACGTGATCTCATTAATC 58.700 37.037 13.75 0.00 39.18 1.75
1997 2023 8.183104 TCTCCTAATGACGTGATCTCATTAAT 57.817 34.615 13.75 0.00 39.18 1.40
1998 2024 7.582667 TCTCCTAATGACGTGATCTCATTAA 57.417 36.000 13.75 3.75 39.18 1.40
1999 2025 7.582667 TTCTCCTAATGACGTGATCTCATTA 57.417 36.000 12.70 12.70 38.86 1.90
2000 2026 6.471233 TTCTCCTAATGACGTGATCTCATT 57.529 37.500 11.95 11.95 40.64 2.57
2001 2027 6.266330 TCATTCTCCTAATGACGTGATCTCAT 59.734 38.462 0.00 0.00 32.21 2.90
2002 2028 5.594317 TCATTCTCCTAATGACGTGATCTCA 59.406 40.000 0.00 0.00 32.21 3.27
2003 2029 6.078202 TCATTCTCCTAATGACGTGATCTC 57.922 41.667 0.00 0.00 32.21 2.75
2004 2030 6.041409 ACATCATTCTCCTAATGACGTGATCT 59.959 38.462 0.00 0.00 39.22 2.75
2005 2031 6.219473 ACATCATTCTCCTAATGACGTGATC 58.781 40.000 0.00 0.00 39.22 2.92
2006 2032 6.166984 ACATCATTCTCCTAATGACGTGAT 57.833 37.500 0.00 0.00 39.22 3.06
2007 2033 5.598416 ACATCATTCTCCTAATGACGTGA 57.402 39.130 0.00 0.00 39.22 4.35
2008 2034 5.351458 TCACATCATTCTCCTAATGACGTG 58.649 41.667 16.59 16.59 46.27 4.49
2009 2035 5.598416 TCACATCATTCTCCTAATGACGT 57.402 39.130 2.72 0.00 39.22 4.34
2010 2036 6.703165 TCAATCACATCATTCTCCTAATGACG 59.297 38.462 2.72 0.00 39.22 4.35
2011 2037 7.496920 TGTCAATCACATCATTCTCCTAATGAC 59.503 37.037 2.72 0.00 39.22 3.06
2012 2038 7.567458 TGTCAATCACATCATTCTCCTAATGA 58.433 34.615 3.13 3.13 40.50 2.57
2013 2039 7.797038 TGTCAATCACATCATTCTCCTAATG 57.203 36.000 0.00 0.00 0.00 1.90
2014 2040 8.215736 TCATGTCAATCACATCATTCTCCTAAT 58.784 33.333 0.00 0.00 44.60 1.73
2015 2041 7.496920 GTCATGTCAATCACATCATTCTCCTAA 59.503 37.037 0.00 0.00 44.60 2.69
2016 2042 6.988580 GTCATGTCAATCACATCATTCTCCTA 59.011 38.462 0.00 0.00 44.60 2.94
2017 2043 5.821470 GTCATGTCAATCACATCATTCTCCT 59.179 40.000 0.00 0.00 44.60 3.69
2018 2044 5.008415 GGTCATGTCAATCACATCATTCTCC 59.992 44.000 0.00 0.00 44.60 3.71
2019 2045 5.008415 GGGTCATGTCAATCACATCATTCTC 59.992 44.000 0.00 0.00 44.60 2.87
2020 2046 4.885907 GGGTCATGTCAATCACATCATTCT 59.114 41.667 0.00 0.00 44.60 2.40
2021 2047 4.641541 TGGGTCATGTCAATCACATCATTC 59.358 41.667 0.00 0.00 44.60 2.67
2022 2048 4.602107 TGGGTCATGTCAATCACATCATT 58.398 39.130 0.00 0.00 44.60 2.57
2023 2049 4.239428 TGGGTCATGTCAATCACATCAT 57.761 40.909 0.00 0.00 44.60 2.45
2024 2050 3.717452 TGGGTCATGTCAATCACATCA 57.283 42.857 0.00 0.00 44.60 3.07
2025 2051 4.458397 AGATGGGTCATGTCAATCACATC 58.542 43.478 8.51 8.51 44.60 3.06
2027 2053 3.679639 CGAGATGGGTCATGTCAATCACA 60.680 47.826 6.00 0.00 40.18 3.58
2028 2054 2.868583 CGAGATGGGTCATGTCAATCAC 59.131 50.000 6.00 0.00 34.40 3.06
2029 2055 2.501316 ACGAGATGGGTCATGTCAATCA 59.499 45.455 6.00 0.00 34.40 2.57
2030 2056 3.185246 ACGAGATGGGTCATGTCAATC 57.815 47.619 6.00 0.00 34.40 2.67
2031 2057 3.634397 AACGAGATGGGTCATGTCAAT 57.366 42.857 6.00 0.00 34.40 2.57
2032 2058 3.678806 GCTAACGAGATGGGTCATGTCAA 60.679 47.826 6.00 0.00 34.40 3.18
2033 2059 2.159099 GCTAACGAGATGGGTCATGTCA 60.159 50.000 6.00 0.00 34.40 3.58
2034 2060 2.101582 AGCTAACGAGATGGGTCATGTC 59.898 50.000 0.00 0.00 31.90 3.06
2035 2061 2.111384 AGCTAACGAGATGGGTCATGT 58.889 47.619 0.00 0.00 0.00 3.21
2036 2062 2.898729 AGCTAACGAGATGGGTCATG 57.101 50.000 0.00 0.00 0.00 3.07
2037 2063 3.243907 GCTAAGCTAACGAGATGGGTCAT 60.244 47.826 0.00 0.00 0.00 3.06
2038 2064 2.100916 GCTAAGCTAACGAGATGGGTCA 59.899 50.000 0.00 0.00 0.00 4.02
2039 2065 2.100916 TGCTAAGCTAACGAGATGGGTC 59.899 50.000 0.00 0.00 0.00 4.46
2040 2066 2.108168 TGCTAAGCTAACGAGATGGGT 58.892 47.619 0.00 0.00 0.00 4.51
2041 2067 2.101582 AGTGCTAAGCTAACGAGATGGG 59.898 50.000 0.00 0.00 0.00 4.00
2042 2068 3.444703 AGTGCTAAGCTAACGAGATGG 57.555 47.619 0.00 0.00 0.00 3.51
2043 2069 4.424626 TCAAGTGCTAAGCTAACGAGATG 58.575 43.478 0.00 0.00 0.00 2.90
2044 2070 4.720649 TCAAGTGCTAAGCTAACGAGAT 57.279 40.909 0.00 0.00 0.00 2.75
2045 2071 4.673441 GATCAAGTGCTAAGCTAACGAGA 58.327 43.478 0.00 0.00 0.00 4.04
2046 2072 3.483922 CGATCAAGTGCTAAGCTAACGAG 59.516 47.826 0.00 0.00 0.00 4.18
2047 2073 3.119602 ACGATCAAGTGCTAAGCTAACGA 60.120 43.478 0.00 0.00 0.00 3.85
2048 2074 3.179830 ACGATCAAGTGCTAAGCTAACG 58.820 45.455 0.00 0.00 0.00 3.18
2049 2075 5.532025 AAACGATCAAGTGCTAAGCTAAC 57.468 39.130 0.00 0.00 0.00 2.34
2050 2076 6.395629 ACTAAACGATCAAGTGCTAAGCTAA 58.604 36.000 0.00 0.00 0.00 3.09
2051 2077 5.962433 ACTAAACGATCAAGTGCTAAGCTA 58.038 37.500 0.00 0.00 0.00 3.32
2052 2078 4.822026 ACTAAACGATCAAGTGCTAAGCT 58.178 39.130 0.00 0.00 0.00 3.74
2053 2079 6.830114 ATACTAAACGATCAAGTGCTAAGC 57.170 37.500 0.00 0.00 0.00 3.09
2054 2080 8.535592 CAGAATACTAAACGATCAAGTGCTAAG 58.464 37.037 0.00 0.00 0.00 2.18
2055 2081 7.010183 GCAGAATACTAAACGATCAAGTGCTAA 59.990 37.037 0.00 0.00 0.00 3.09
2056 2082 6.475727 GCAGAATACTAAACGATCAAGTGCTA 59.524 38.462 0.00 0.00 0.00 3.49
2057 2083 5.292101 GCAGAATACTAAACGATCAAGTGCT 59.708 40.000 0.00 0.00 0.00 4.40
2058 2084 5.292101 AGCAGAATACTAAACGATCAAGTGC 59.708 40.000 0.00 0.00 0.00 4.40
2059 2085 6.893958 AGCAGAATACTAAACGATCAAGTG 57.106 37.500 0.00 0.00 0.00 3.16
2060 2086 9.035607 CAATAGCAGAATACTAAACGATCAAGT 57.964 33.333 0.00 0.00 0.00 3.16
2061 2087 8.006590 GCAATAGCAGAATACTAAACGATCAAG 58.993 37.037 0.00 0.00 41.58 3.02
2062 2088 7.710907 AGCAATAGCAGAATACTAAACGATCAA 59.289 33.333 0.00 0.00 45.49 2.57
2063 2089 7.210174 AGCAATAGCAGAATACTAAACGATCA 58.790 34.615 0.00 0.00 45.49 2.92
2064 2090 7.644986 AGCAATAGCAGAATACTAAACGATC 57.355 36.000 0.00 0.00 45.49 3.69
2065 2091 8.438676 AAAGCAATAGCAGAATACTAAACGAT 57.561 30.769 0.00 0.00 45.49 3.73
2066 2092 7.764443 AGAAAGCAATAGCAGAATACTAAACGA 59.236 33.333 0.00 0.00 45.49 3.85
2067 2093 7.910304 AGAAAGCAATAGCAGAATACTAAACG 58.090 34.615 0.00 0.00 45.49 3.60
2068 2094 9.709600 GAAGAAAGCAATAGCAGAATACTAAAC 57.290 33.333 0.00 0.00 45.49 2.01
2069 2095 9.448438 TGAAGAAAGCAATAGCAGAATACTAAA 57.552 29.630 0.00 0.00 45.49 1.85
2070 2096 9.618890 ATGAAGAAAGCAATAGCAGAATACTAA 57.381 29.630 0.00 0.00 45.49 2.24
2071 2097 9.049523 CATGAAGAAAGCAATAGCAGAATACTA 57.950 33.333 0.00 0.00 45.49 1.82
2072 2098 7.772292 TCATGAAGAAAGCAATAGCAGAATACT 59.228 33.333 0.00 0.00 45.49 2.12
2073 2099 7.854916 GTCATGAAGAAAGCAATAGCAGAATAC 59.145 37.037 0.00 0.00 45.49 1.89
2074 2100 7.772292 AGTCATGAAGAAAGCAATAGCAGAATA 59.228 33.333 0.00 0.00 45.49 1.75
2075 2101 6.602406 AGTCATGAAGAAAGCAATAGCAGAAT 59.398 34.615 0.00 0.00 45.49 2.40
2076 2102 5.942236 AGTCATGAAGAAAGCAATAGCAGAA 59.058 36.000 0.00 0.00 45.49 3.02
2077 2103 5.494724 AGTCATGAAGAAAGCAATAGCAGA 58.505 37.500 0.00 0.00 45.49 4.26
2078 2104 5.814764 AGTCATGAAGAAAGCAATAGCAG 57.185 39.130 0.00 0.00 45.49 4.24
2079 2105 7.870509 ATAAGTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
2080 2106 8.830580 TGTATAAGTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
2083 2109 9.182214 ACATGTATAAGTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
2084 2110 8.565896 ACATGTATAAGTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
2085 2111 8.565896 AACATGTATAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
2086 2112 8.125448 GGAACATGTATAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
2087 2113 9.388506 AGGAACATGTATAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
2088 2114 9.166173 CAGGAACATGTATAAGTCATGAAGAAA 57.834 33.333 0.00 0.00 43.47 2.52
2089 2115 8.321353 ACAGGAACATGTATAAGTCATGAAGAA 58.679 33.333 14.21 0.00 43.47 2.52
2090 2116 7.851228 ACAGGAACATGTATAAGTCATGAAGA 58.149 34.615 14.21 0.00 43.47 2.87
2091 2117 9.599866 TTACAGGAACATGTATAAGTCATGAAG 57.400 33.333 14.21 0.00 43.47 3.02
2092 2118 9.378551 GTTACAGGAACATGTATAAGTCATGAA 57.621 33.333 14.21 4.02 43.47 2.57
2093 2119 8.758829 AGTTACAGGAACATGTATAAGTCATGA 58.241 33.333 14.21 0.00 43.47 3.07
2094 2120 8.948631 AGTTACAGGAACATGTATAAGTCATG 57.051 34.615 0.00 2.95 45.41 3.07
2106 2132 9.277783 GCATAATTCTCATAGTTACAGGAACAT 57.722 33.333 0.00 0.00 40.86 2.71
2107 2133 8.264347 TGCATAATTCTCATAGTTACAGGAACA 58.736 33.333 0.00 0.00 40.86 3.18
2108 2134 8.662781 TGCATAATTCTCATAGTTACAGGAAC 57.337 34.615 0.00 0.00 38.44 3.62
2109 2135 9.109393 GTTGCATAATTCTCATAGTTACAGGAA 57.891 33.333 0.00 0.00 0.00 3.36
2110 2136 8.486210 AGTTGCATAATTCTCATAGTTACAGGA 58.514 33.333 0.00 0.00 0.00 3.86
2111 2137 8.668510 AGTTGCATAATTCTCATAGTTACAGG 57.331 34.615 0.00 0.00 0.00 4.00
2112 2138 8.768955 GGAGTTGCATAATTCTCATAGTTACAG 58.231 37.037 0.00 0.00 0.00 2.74
2113 2139 7.715249 GGGAGTTGCATAATTCTCATAGTTACA 59.285 37.037 0.00 0.00 0.00 2.41
2114 2140 7.095607 CGGGAGTTGCATAATTCTCATAGTTAC 60.096 40.741 0.00 0.00 0.00 2.50
2115 2141 6.929049 CGGGAGTTGCATAATTCTCATAGTTA 59.071 38.462 0.00 0.00 0.00 2.24
2116 2142 5.760253 CGGGAGTTGCATAATTCTCATAGTT 59.240 40.000 0.00 0.00 0.00 2.24
2117 2143 5.163301 ACGGGAGTTGCATAATTCTCATAGT 60.163 40.000 0.00 0.00 43.33 2.12
2118 2144 5.300752 ACGGGAGTTGCATAATTCTCATAG 58.699 41.667 0.00 0.00 43.33 2.23
2119 2145 5.290493 ACGGGAGTTGCATAATTCTCATA 57.710 39.130 0.00 0.00 43.33 2.15
2120 2146 4.156455 ACGGGAGTTGCATAATTCTCAT 57.844 40.909 0.00 0.00 43.33 2.90
2121 2147 3.627395 ACGGGAGTTGCATAATTCTCA 57.373 42.857 0.00 0.00 43.33 3.27
2139 2165 2.159327 AAGTGTTCCTCCGGTAAACG 57.841 50.000 0.00 0.00 43.80 3.60
2140 2166 2.551032 CCAAAGTGTTCCTCCGGTAAAC 59.449 50.000 0.00 5.38 0.00 2.01
2141 2167 2.487625 CCCAAAGTGTTCCTCCGGTAAA 60.488 50.000 0.00 0.00 0.00 2.01
2142 2168 1.072648 CCCAAAGTGTTCCTCCGGTAA 59.927 52.381 0.00 0.00 0.00 2.85
2143 2169 0.688487 CCCAAAGTGTTCCTCCGGTA 59.312 55.000 0.00 0.00 0.00 4.02
2144 2170 1.350310 ACCCAAAGTGTTCCTCCGGT 61.350 55.000 0.00 0.00 0.00 5.28
2145 2171 0.688487 TACCCAAAGTGTTCCTCCGG 59.312 55.000 0.00 0.00 0.00 5.14
2146 2172 1.346722 AGTACCCAAAGTGTTCCTCCG 59.653 52.381 0.00 0.00 0.00 4.63
2147 2173 3.307269 GGTAGTACCCAAAGTGTTCCTCC 60.307 52.174 8.27 0.00 30.04 4.30
2148 2174 3.325716 TGGTAGTACCCAAAGTGTTCCTC 59.674 47.826 16.91 0.00 37.50 3.71
2149 2175 3.320129 TGGTAGTACCCAAAGTGTTCCT 58.680 45.455 16.91 0.00 37.50 3.36
2150 2176 3.775261 TGGTAGTACCCAAAGTGTTCC 57.225 47.619 16.91 0.00 37.50 3.62
2158 2184 2.433604 TGTGACGTTTGGTAGTACCCAA 59.566 45.455 16.91 9.33 42.69 4.12
2159 2185 2.037901 TGTGACGTTTGGTAGTACCCA 58.962 47.619 16.91 2.52 37.50 4.51
2160 2186 2.802247 GTTGTGACGTTTGGTAGTACCC 59.198 50.000 16.91 0.45 37.50 3.69
2161 2187 2.472488 CGTTGTGACGTTTGGTAGTACC 59.528 50.000 12.80 12.80 44.08 3.34
2162 2188 3.758521 CGTTGTGACGTTTGGTAGTAC 57.241 47.619 0.00 0.00 44.08 2.73
2174 2200 2.228138 TCACCCAGTTACGTTGTGAC 57.772 50.000 0.00 0.00 31.45 3.67
2175 2201 3.478857 AATCACCCAGTTACGTTGTGA 57.521 42.857 0.00 6.41 39.95 3.58
2176 2202 6.971527 TTATAATCACCCAGTTACGTTGTG 57.028 37.500 0.00 0.00 0.00 3.33
2177 2203 6.596497 CCTTTATAATCACCCAGTTACGTTGT 59.404 38.462 0.00 0.00 0.00 3.32
2178 2204 6.819649 TCCTTTATAATCACCCAGTTACGTTG 59.180 38.462 0.00 0.00 0.00 4.10
2179 2205 6.949715 TCCTTTATAATCACCCAGTTACGTT 58.050 36.000 0.00 0.00 0.00 3.99
2180 2206 6.155737 ACTCCTTTATAATCACCCAGTTACGT 59.844 38.462 0.00 0.00 0.00 3.57
2181 2207 6.579865 ACTCCTTTATAATCACCCAGTTACG 58.420 40.000 0.00 0.00 0.00 3.18
2182 2208 8.702819 AGTACTCCTTTATAATCACCCAGTTAC 58.297 37.037 0.00 0.00 0.00 2.50
2183 2209 8.849543 AGTACTCCTTTATAATCACCCAGTTA 57.150 34.615 0.00 0.00 0.00 2.24
2184 2210 7.750947 AGTACTCCTTTATAATCACCCAGTT 57.249 36.000 0.00 0.00 0.00 3.16
2185 2211 7.842743 TGTAGTACTCCTTTATAATCACCCAGT 59.157 37.037 0.00 0.00 0.00 4.00
2186 2212 8.246430 TGTAGTACTCCTTTATAATCACCCAG 57.754 38.462 0.00 0.00 0.00 4.45
2187 2213 7.289317 CCTGTAGTACTCCTTTATAATCACCCA 59.711 40.741 0.00 0.00 0.00 4.51
2188 2214 7.289549 ACCTGTAGTACTCCTTTATAATCACCC 59.710 40.741 0.00 0.00 0.00 4.61
2189 2215 8.142551 CACCTGTAGTACTCCTTTATAATCACC 58.857 40.741 0.00 0.00 0.00 4.02
2190 2216 8.693625 ACACCTGTAGTACTCCTTTATAATCAC 58.306 37.037 0.00 0.00 0.00 3.06
2191 2217 8.834004 ACACCTGTAGTACTCCTTTATAATCA 57.166 34.615 0.00 0.00 0.00 2.57
2192 2218 9.134055 AGACACCTGTAGTACTCCTTTATAATC 57.866 37.037 0.00 0.00 0.00 1.75
2193 2219 9.134055 GAGACACCTGTAGTACTCCTTTATAAT 57.866 37.037 0.00 0.00 0.00 1.28
2194 2220 7.559170 GGAGACACCTGTAGTACTCCTTTATAA 59.441 40.741 0.00 0.00 42.81 0.98
2195 2221 7.059156 GGAGACACCTGTAGTACTCCTTTATA 58.941 42.308 0.00 0.00 42.81 0.98
2196 2222 5.892686 GGAGACACCTGTAGTACTCCTTTAT 59.107 44.000 0.00 0.00 42.81 1.40
2197 2223 5.222192 TGGAGACACCTGTAGTACTCCTTTA 60.222 44.000 0.00 0.00 44.66 1.85
2198 2224 4.087907 GGAGACACCTGTAGTACTCCTTT 58.912 47.826 0.00 0.00 42.81 3.11
2199 2225 3.075582 TGGAGACACCTGTAGTACTCCTT 59.924 47.826 0.00 0.00 44.66 3.36
2200 2226 2.648304 TGGAGACACCTGTAGTACTCCT 59.352 50.000 0.00 0.00 44.66 3.69
2201 2227 3.083122 TGGAGACACCTGTAGTACTCC 57.917 52.381 0.00 0.00 44.64 3.85
2202 2228 4.082136 CCTTTGGAGACACCTGTAGTACTC 60.082 50.000 0.00 0.00 42.67 2.59
2203 2229 3.833070 CCTTTGGAGACACCTGTAGTACT 59.167 47.826 0.00 0.00 42.67 2.73
2204 2230 3.577415 ACCTTTGGAGACACCTGTAGTAC 59.423 47.826 0.00 0.00 42.67 2.73
2205 2231 3.853207 ACCTTTGGAGACACCTGTAGTA 58.147 45.455 0.00 0.00 42.67 1.82
2206 2232 2.690840 ACCTTTGGAGACACCTGTAGT 58.309 47.619 0.00 0.00 42.67 2.73
2207 2233 3.576982 TGTACCTTTGGAGACACCTGTAG 59.423 47.826 0.00 0.00 42.67 2.74
2208 2234 3.578978 TGTACCTTTGGAGACACCTGTA 58.421 45.455 0.00 0.00 42.67 2.74
2209 2235 2.404559 TGTACCTTTGGAGACACCTGT 58.595 47.619 0.00 0.00 42.67 4.00
2210 2236 3.244561 ACATGTACCTTTGGAGACACCTG 60.245 47.826 0.00 0.00 42.67 4.00
2211 2237 2.979678 ACATGTACCTTTGGAGACACCT 59.020 45.455 0.00 0.00 42.67 4.00
2212 2238 3.418684 ACATGTACCTTTGGAGACACC 57.581 47.619 0.00 0.00 42.67 4.16
2213 2239 4.385825 TCAACATGTACCTTTGGAGACAC 58.614 43.478 0.00 0.00 42.67 3.67
2214 2240 4.102524 ACTCAACATGTACCTTTGGAGACA 59.897 41.667 0.00 0.00 39.83 3.41
2215 2241 4.642429 ACTCAACATGTACCTTTGGAGAC 58.358 43.478 0.00 0.00 0.00 3.36
2216 2242 4.974645 ACTCAACATGTACCTTTGGAGA 57.025 40.909 0.00 0.00 0.00 3.71
2217 2243 4.216257 CCAACTCAACATGTACCTTTGGAG 59.784 45.833 18.06 10.77 35.28 3.86
2218 2244 4.141287 CCAACTCAACATGTACCTTTGGA 58.859 43.478 18.06 1.56 35.28 3.53
2219 2245 3.305335 GCCAACTCAACATGTACCTTTGG 60.305 47.826 18.38 18.38 36.20 3.28
2220 2246 3.609175 CGCCAACTCAACATGTACCTTTG 60.609 47.826 0.00 1.04 0.00 2.77
2221 2247 2.552315 CGCCAACTCAACATGTACCTTT 59.448 45.455 0.00 0.00 0.00 3.11
2222 2248 2.151202 CGCCAACTCAACATGTACCTT 58.849 47.619 0.00 0.00 0.00 3.50
2223 2249 1.071699 ACGCCAACTCAACATGTACCT 59.928 47.619 0.00 0.00 0.00 3.08
2224 2250 1.519408 ACGCCAACTCAACATGTACC 58.481 50.000 0.00 0.00 0.00 3.34
2225 2251 4.939509 AATACGCCAACTCAACATGTAC 57.060 40.909 0.00 0.00 0.00 2.90
2226 2252 4.092237 CGAAATACGCCAACTCAACATGTA 59.908 41.667 0.00 0.00 34.51 2.29
2227 2253 3.120338 CGAAATACGCCAACTCAACATGT 60.120 43.478 0.00 0.00 34.51 3.21
2228 2254 3.124466 TCGAAATACGCCAACTCAACATG 59.876 43.478 0.00 0.00 42.26 3.21
2229 2255 3.331150 TCGAAATACGCCAACTCAACAT 58.669 40.909 0.00 0.00 42.26 2.71
2230 2256 2.734606 CTCGAAATACGCCAACTCAACA 59.265 45.455 0.00 0.00 42.26 3.33
2231 2257 2.991190 TCTCGAAATACGCCAACTCAAC 59.009 45.455 0.00 0.00 42.26 3.18
2232 2258 3.306917 TCTCGAAATACGCCAACTCAA 57.693 42.857 0.00 0.00 42.26 3.02
2233 2259 3.520290 ATCTCGAAATACGCCAACTCA 57.480 42.857 0.00 0.00 42.26 3.41
2234 2260 4.444720 CCTAATCTCGAAATACGCCAACTC 59.555 45.833 0.00 0.00 42.26 3.01
2235 2261 4.142004 ACCTAATCTCGAAATACGCCAACT 60.142 41.667 0.00 0.00 42.26 3.16
2236 2262 4.117685 ACCTAATCTCGAAATACGCCAAC 58.882 43.478 0.00 0.00 42.26 3.77
2237 2263 4.395959 ACCTAATCTCGAAATACGCCAA 57.604 40.909 0.00 0.00 42.26 4.52
2238 2264 4.395959 AACCTAATCTCGAAATACGCCA 57.604 40.909 0.00 0.00 42.26 5.69
2239 2265 5.064325 ACAAAACCTAATCTCGAAATACGCC 59.936 40.000 0.00 0.00 42.26 5.68
2240 2266 6.103222 ACAAAACCTAATCTCGAAATACGC 57.897 37.500 0.00 0.00 42.26 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.