Multiple sequence alignment - TraesCS5B01G057900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G057900 chr5B 100.000 3742 0 0 1 3742 63630893 63634634 0.000000e+00 6911.0
1 TraesCS5B01G057900 chr5B 85.302 2252 217 62 984 3174 72252833 72255031 0.000000e+00 2220.0
2 TraesCS5B01G057900 chr5B 86.418 2010 206 40 984 2948 72631421 72629434 0.000000e+00 2137.0
3 TraesCS5B01G057900 chr5B 90.172 1628 122 21 984 2596 63844199 63845803 0.000000e+00 2085.0
4 TraesCS5B01G057900 chr5B 86.984 315 34 4 376 685 572073505 572073817 7.690000e-92 348.0
5 TraesCS5B01G057900 chr5B 95.276 127 6 0 296 422 572073381 572073507 6.340000e-48 202.0
6 TraesCS5B01G057900 chr5B 91.912 136 9 2 741 875 63626720 63626586 4.930000e-44 189.0
7 TraesCS5B01G057900 chr5B 83.333 114 4 3 877 983 63844066 63844171 1.430000e-14 91.6
8 TraesCS5B01G057900 chr5B 88.679 53 2 2 3475 3523 72254979 72255031 1.120000e-05 62.1
9 TraesCS5B01G057900 chr5D 95.365 2524 87 16 877 3375 58658928 58661446 0.000000e+00 3986.0
10 TraesCS5B01G057900 chr5D 87.261 1939 193 27 984 2899 58946898 58948805 0.000000e+00 2163.0
11 TraesCS5B01G057900 chr5D 84.565 2274 226 72 984 3174 58677626 58679857 0.000000e+00 2139.0
12 TraesCS5B01G057900 chr5D 94.330 388 16 3 3360 3742 58662981 58663367 1.160000e-164 590.0
13 TraesCS5B01G057900 chr5D 84.733 393 46 10 884 1271 58945828 58946211 7.580000e-102 381.0
14 TraesCS5B01G057900 chr5D 85.577 104 14 1 3415 3518 58948942 58949044 1.420000e-19 108.0
15 TraesCS5B01G057900 chr5A 86.814 1039 82 24 1127 2153 47120790 47121785 0.000000e+00 1109.0
16 TraesCS5B01G057900 chr5A 95.364 302 14 0 1 302 531335653 531335352 7.270000e-132 481.0
17 TraesCS5B01G057900 chr5A 96.957 230 7 0 906 1135 47115604 47115833 1.630000e-103 387.0
18 TraesCS5B01G057900 chr5A 92.647 136 8 2 741 875 679759808 679759674 1.060000e-45 195.0
19 TraesCS5B01G057900 chr5A 92.647 136 8 2 741 875 705312440 705312306 1.060000e-45 195.0
20 TraesCS5B01G057900 chr7B 77.345 1386 243 53 1089 2427 558211237 558212598 0.000000e+00 754.0
21 TraesCS5B01G057900 chr7D 78.167 1200 217 36 1089 2258 523195511 523196695 0.000000e+00 723.0
22 TraesCS5B01G057900 chr7D 78.120 1202 203 41 1089 2258 523265613 523266786 0.000000e+00 708.0
23 TraesCS5B01G057900 chr7D 95.695 302 13 0 1 302 110633842 110633541 1.560000e-133 486.0
24 TraesCS5B01G057900 chr7D 81.839 435 46 18 296 700 529430246 529430677 5.990000e-88 335.0
25 TraesCS5B01G057900 chr4A 80.765 915 132 26 1120 2015 497809858 497810747 0.000000e+00 675.0
26 TraesCS5B01G057900 chr4A 92.647 136 8 2 741 875 88467974 88468108 1.060000e-45 195.0
27 TraesCS5B01G057900 chr1B 93.381 423 27 1 1 423 90271768 90271347 3.170000e-175 625.0
28 TraesCS5B01G057900 chr1B 88.750 320 30 3 380 694 90271346 90271028 1.630000e-103 387.0
29 TraesCS5B01G057900 chr1B 93.893 131 6 2 746 875 87996303 87996432 2.950000e-46 196.0
30 TraesCS5B01G057900 chr1B 90.909 143 11 2 741 883 3200735 3200595 1.370000e-44 191.0
31 TraesCS5B01G057900 chr1B 92.593 135 7 3 746 879 384330895 384331027 1.370000e-44 191.0
32 TraesCS5B01G057900 chr1B 92.800 125 9 0 299 423 459793197 459793073 8.260000e-42 182.0
33 TraesCS5B01G057900 chr2B 92.906 437 18 3 1 424 566011327 566010891 1.140000e-174 623.0
34 TraesCS5B01G057900 chr2B 92.449 437 19 5 1 424 725124541 725124976 2.470000e-171 612.0
35 TraesCS5B01G057900 chr2B 92.689 424 24 1 1 424 116263107 116262691 4.130000e-169 604.0
36 TraesCS5B01G057900 chr2B 90.435 460 35 6 421 875 116262647 116262192 6.920000e-167 597.0
37 TraesCS5B01G057900 chr4B 91.304 437 25 1 1 424 411477170 411477606 5.390000e-163 584.0
38 TraesCS5B01G057900 chr4B 85.872 453 29 17 455 875 50441639 50442088 2.050000e-122 449.0
39 TraesCS5B01G057900 chr4B 92.391 276 20 1 422 696 411477651 411477926 3.500000e-105 392.0
40 TraesCS5B01G057900 chr4B 92.754 138 8 2 741 877 628600176 628600040 8.200000e-47 198.0
41 TraesCS5B01G057900 chr1A 95.695 302 12 1 1 302 535718366 535718066 5.620000e-133 484.0
42 TraesCS5B01G057900 chr2D 95.946 296 12 0 1 296 50037967 50038262 7.270000e-132 481.0
43 TraesCS5B01G057900 chr2D 95.364 302 14 0 1 302 585392363 585392062 7.270000e-132 481.0
44 TraesCS5B01G057900 chr2D 80.880 523 59 17 296 781 50038616 50039134 1.270000e-99 374.0
45 TraesCS5B01G057900 chr6B 79.051 506 87 12 380 875 611666976 611667472 2.790000e-86 329.0
46 TraesCS5B01G057900 chr6A 81.336 434 49 17 296 700 131173847 131173417 1.300000e-84 324.0
47 TraesCS5B01G057900 chr3B 94.118 136 6 2 741 875 499766047 499766181 4.900000e-49 206.0
48 TraesCS5B01G057900 chrUn 95.312 128 6 0 296 423 5465601 5465728 1.760000e-48 204.0
49 TraesCS5B01G057900 chr6D 92.800 125 9 0 298 422 226769405 226769529 8.260000e-42 182.0
50 TraesCS5B01G057900 chr1D 92.800 125 9 0 299 423 206977912 206977788 8.260000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G057900 chr5B 63630893 63634634 3741 False 6911.00 6911 100.0000 1 3742 1 chr5B.!!$F1 3741
1 TraesCS5B01G057900 chr5B 72629434 72631421 1987 True 2137.00 2137 86.4180 984 2948 1 chr5B.!!$R2 1964
2 TraesCS5B01G057900 chr5B 72252833 72255031 2198 False 1141.05 2220 86.9905 984 3523 2 chr5B.!!$F3 2539
3 TraesCS5B01G057900 chr5B 63844066 63845803 1737 False 1088.30 2085 86.7525 877 2596 2 chr5B.!!$F2 1719
4 TraesCS5B01G057900 chr5D 58658928 58663367 4439 False 2288.00 3986 94.8475 877 3742 2 chr5D.!!$F2 2865
5 TraesCS5B01G057900 chr5D 58677626 58679857 2231 False 2139.00 2139 84.5650 984 3174 1 chr5D.!!$F1 2190
6 TraesCS5B01G057900 chr5D 58945828 58949044 3216 False 884.00 2163 85.8570 884 3518 3 chr5D.!!$F3 2634
7 TraesCS5B01G057900 chr5A 47120790 47121785 995 False 1109.00 1109 86.8140 1127 2153 1 chr5A.!!$F2 1026
8 TraesCS5B01G057900 chr7B 558211237 558212598 1361 False 754.00 754 77.3450 1089 2427 1 chr7B.!!$F1 1338
9 TraesCS5B01G057900 chr7D 523195511 523196695 1184 False 723.00 723 78.1670 1089 2258 1 chr7D.!!$F1 1169
10 TraesCS5B01G057900 chr7D 523265613 523266786 1173 False 708.00 708 78.1200 1089 2258 1 chr7D.!!$F2 1169
11 TraesCS5B01G057900 chr4A 497809858 497810747 889 False 675.00 675 80.7650 1120 2015 1 chr4A.!!$F2 895
12 TraesCS5B01G057900 chr1B 90271028 90271768 740 True 506.00 625 91.0655 1 694 2 chr1B.!!$R3 693
13 TraesCS5B01G057900 chr2B 116262192 116263107 915 True 600.50 604 91.5620 1 875 2 chr2B.!!$R2 874
14 TraesCS5B01G057900 chr4B 411477170 411477926 756 False 488.00 584 91.8475 1 696 2 chr4B.!!$F2 695
15 TraesCS5B01G057900 chr2D 50037967 50039134 1167 False 427.50 481 88.4130 1 781 2 chr2D.!!$F1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.035630 ATCTCAGTCACTGCCCAAGC 60.036 55.0 0.0 0.0 40.48 4.01 F
548 549 0.038159 CCGTCAGTGTCTCCTTGTCC 60.038 60.0 0.0 0.0 0.00 4.02 F
808 809 0.109723 CGAGGGGGTCCTTTTTGACA 59.890 55.0 0.0 0.0 45.05 3.58 F
851 852 0.396060 TTTGGCAATTCTGTTGGCCC 59.604 50.0 0.0 0.0 45.83 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 3405 0.324614 TGCTCTCCATGGCGAAAGAA 59.675 50.000 6.96 0.0 0.00 2.52 R
2169 3809 0.815095 TCATAGACTCCGAAGCGCAA 59.185 50.000 11.47 0.0 0.00 4.85 R
2696 4379 2.627945 GGTGCAACTGGATCGTCATTA 58.372 47.619 0.00 0.0 36.74 1.90 R
2760 4445 6.207221 ACAATCTAAAACAGTGCATCACATGA 59.793 34.615 0.00 0.0 36.74 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.761608 TCCCTGTTTTTCTTTCCTAAATCCTA 58.238 34.615 0.00 0.00 0.00 2.94
96 97 3.926616 TCTTTTAACTCCCTCTCTTGCG 58.073 45.455 0.00 0.00 0.00 4.85
104 105 1.239968 CCCTCTCTTGCGCTGCTTTT 61.240 55.000 9.73 0.00 0.00 2.27
106 107 1.400759 CCTCTCTTGCGCTGCTTTTTC 60.401 52.381 9.73 0.00 0.00 2.29
107 108 0.593128 TCTCTTGCGCTGCTTTTTCC 59.407 50.000 9.73 0.00 0.00 3.13
108 109 0.595095 CTCTTGCGCTGCTTTTTCCT 59.405 50.000 9.73 0.00 0.00 3.36
109 110 0.593128 TCTTGCGCTGCTTTTTCCTC 59.407 50.000 9.73 0.00 0.00 3.71
110 111 0.311790 CTTGCGCTGCTTTTTCCTCA 59.688 50.000 9.73 0.00 0.00 3.86
111 112 0.311790 TTGCGCTGCTTTTTCCTCAG 59.688 50.000 9.73 0.00 0.00 3.35
112 113 1.443363 GCGCTGCTTTTTCCTCAGC 60.443 57.895 0.00 3.59 46.98 4.26
115 116 2.344504 GCTGCTTTTTCCTCAGCTTC 57.655 50.000 6.24 0.00 46.93 3.86
116 117 1.067985 GCTGCTTTTTCCTCAGCTTCC 60.068 52.381 6.24 0.00 46.93 3.46
117 118 1.198637 CTGCTTTTTCCTCAGCTTCCG 59.801 52.381 0.00 0.00 36.92 4.30
118 119 0.109551 GCTTTTTCCTCAGCTTCCGC 60.110 55.000 0.00 0.00 32.87 5.54
119 120 0.523519 CTTTTTCCTCAGCTTCCGCC 59.476 55.000 0.00 0.00 36.60 6.13
120 121 0.110486 TTTTTCCTCAGCTTCCGCCT 59.890 50.000 0.00 0.00 36.60 5.52
121 122 0.110486 TTTTCCTCAGCTTCCGCCTT 59.890 50.000 0.00 0.00 36.60 4.35
122 123 0.321653 TTTCCTCAGCTTCCGCCTTC 60.322 55.000 0.00 0.00 36.60 3.46
123 124 1.194781 TTCCTCAGCTTCCGCCTTCT 61.195 55.000 0.00 0.00 36.60 2.85
124 125 1.153469 CCTCAGCTTCCGCCTTCTC 60.153 63.158 0.00 0.00 36.60 2.87
125 126 1.518133 CTCAGCTTCCGCCTTCTCG 60.518 63.158 0.00 0.00 36.60 4.04
126 127 3.191539 CAGCTTCCGCCTTCTCGC 61.192 66.667 0.00 0.00 36.60 5.03
134 135 4.484258 GCCTTCTCGCGTCGCTCT 62.484 66.667 16.36 0.00 0.00 4.09
135 136 2.179517 CCTTCTCGCGTCGCTCTT 59.820 61.111 16.36 0.00 0.00 2.85
136 137 1.444553 CCTTCTCGCGTCGCTCTTT 60.445 57.895 16.36 0.00 0.00 2.52
137 138 1.406970 CCTTCTCGCGTCGCTCTTTC 61.407 60.000 16.36 0.00 0.00 2.62
138 139 1.724978 CTTCTCGCGTCGCTCTTTCG 61.725 60.000 16.36 0.00 0.00 3.46
139 140 3.891834 CTCGCGTCGCTCTTTCGC 61.892 66.667 16.36 0.00 45.28 4.70
144 145 3.235944 CGTCGCTCTTTCGCATAGA 57.764 52.632 0.00 0.00 0.00 1.98
145 146 1.545759 CGTCGCTCTTTCGCATAGAA 58.454 50.000 0.00 0.00 37.01 2.10
146 147 1.917955 CGTCGCTCTTTCGCATAGAAA 59.082 47.619 0.00 0.00 45.76 2.52
147 148 2.284514 CGTCGCTCTTTCGCATAGAAAC 60.285 50.000 0.00 0.00 43.35 2.78
148 149 2.924290 GTCGCTCTTTCGCATAGAAACT 59.076 45.455 0.00 0.00 43.35 2.66
149 150 4.103357 GTCGCTCTTTCGCATAGAAACTA 58.897 43.478 0.00 0.00 43.35 2.24
150 151 4.740695 GTCGCTCTTTCGCATAGAAACTAT 59.259 41.667 0.00 0.00 43.35 2.12
151 152 5.232414 GTCGCTCTTTCGCATAGAAACTATT 59.768 40.000 0.00 0.00 43.35 1.73
152 153 5.459107 TCGCTCTTTCGCATAGAAACTATTC 59.541 40.000 0.00 0.00 43.35 1.75
153 154 5.332656 CGCTCTTTCGCATAGAAACTATTCC 60.333 44.000 0.00 0.00 43.35 3.01
154 155 5.523916 GCTCTTTCGCATAGAAACTATTCCA 59.476 40.000 0.00 0.00 43.35 3.53
155 156 6.510317 GCTCTTTCGCATAGAAACTATTCCAC 60.510 42.308 0.00 0.00 43.35 4.02
156 157 5.518847 TCTTTCGCATAGAAACTATTCCACG 59.481 40.000 0.00 0.00 43.35 4.94
157 158 3.120792 TCGCATAGAAACTATTCCACGC 58.879 45.455 0.00 0.00 36.12 5.34
158 159 2.863740 CGCATAGAAACTATTCCACGCA 59.136 45.455 0.00 0.00 36.12 5.24
159 160 3.494626 CGCATAGAAACTATTCCACGCAT 59.505 43.478 0.00 0.00 36.12 4.73
160 161 4.609113 CGCATAGAAACTATTCCACGCATG 60.609 45.833 0.00 0.00 36.12 4.06
162 163 2.017049 AGAAACTATTCCACGCATGGC 58.983 47.619 0.00 0.00 46.80 4.40
163 164 3.570100 AGAAACTATTCCACGCATGGCG 61.570 50.000 9.30 9.30 46.80 5.69
164 165 5.794381 AGAAACTATTCCACGCATGGCGA 62.794 47.826 18.22 0.00 46.80 5.54
174 175 3.683581 GCATGGCGACTTCTTTCAC 57.316 52.632 0.00 0.00 0.00 3.18
175 176 0.179215 GCATGGCGACTTCTTTCACG 60.179 55.000 0.00 0.00 0.00 4.35
176 177 1.428448 CATGGCGACTTCTTTCACGA 58.572 50.000 0.00 0.00 0.00 4.35
177 178 1.798223 CATGGCGACTTCTTTCACGAA 59.202 47.619 0.00 0.00 0.00 3.85
178 179 2.163818 TGGCGACTTCTTTCACGAAT 57.836 45.000 0.00 0.00 0.00 3.34
179 180 2.066262 TGGCGACTTCTTTCACGAATC 58.934 47.619 0.00 0.00 0.00 2.52
180 181 2.288825 TGGCGACTTCTTTCACGAATCT 60.289 45.455 0.00 0.00 0.00 2.40
181 182 2.345942 GGCGACTTCTTTCACGAATCTC 59.654 50.000 0.00 0.00 0.00 2.75
182 183 2.987149 GCGACTTCTTTCACGAATCTCA 59.013 45.455 0.00 0.00 0.00 3.27
183 184 3.060098 GCGACTTCTTTCACGAATCTCAG 59.940 47.826 0.00 0.00 0.00 3.35
184 185 4.230657 CGACTTCTTTCACGAATCTCAGT 58.769 43.478 0.00 0.00 0.00 3.41
185 186 4.322274 CGACTTCTTTCACGAATCTCAGTC 59.678 45.833 0.00 0.00 0.00 3.51
186 187 5.201713 ACTTCTTTCACGAATCTCAGTCA 57.798 39.130 0.00 0.00 0.00 3.41
187 188 4.985409 ACTTCTTTCACGAATCTCAGTCAC 59.015 41.667 0.00 0.00 0.00 3.67
188 189 4.855715 TCTTTCACGAATCTCAGTCACT 57.144 40.909 0.00 0.00 0.00 3.41
189 190 4.550422 TCTTTCACGAATCTCAGTCACTG 58.450 43.478 0.00 0.00 0.00 3.66
190 191 2.354109 TCACGAATCTCAGTCACTGC 57.646 50.000 0.00 0.00 0.00 4.40
191 192 1.067565 TCACGAATCTCAGTCACTGCC 60.068 52.381 0.00 0.00 0.00 4.85
192 193 0.247736 ACGAATCTCAGTCACTGCCC 59.752 55.000 0.00 0.00 0.00 5.36
193 194 0.247460 CGAATCTCAGTCACTGCCCA 59.753 55.000 0.00 0.00 0.00 5.36
194 195 1.338105 CGAATCTCAGTCACTGCCCAA 60.338 52.381 0.00 0.00 0.00 4.12
195 196 2.354259 GAATCTCAGTCACTGCCCAAG 58.646 52.381 0.00 0.00 0.00 3.61
196 197 0.035630 ATCTCAGTCACTGCCCAAGC 60.036 55.000 0.00 0.00 40.48 4.01
197 198 1.673665 CTCAGTCACTGCCCAAGCC 60.674 63.158 0.00 0.00 38.69 4.35
198 199 3.052082 CAGTCACTGCCCAAGCCG 61.052 66.667 0.00 0.00 38.69 5.52
199 200 4.335647 AGTCACTGCCCAAGCCGG 62.336 66.667 0.00 0.00 38.69 6.13
216 217 2.695314 GGCATCTCCGTGTCAATCC 58.305 57.895 0.00 0.00 0.00 3.01
217 218 0.107703 GGCATCTCCGTGTCAATCCA 60.108 55.000 0.00 0.00 0.00 3.41
218 219 1.678728 GGCATCTCCGTGTCAATCCAA 60.679 52.381 0.00 0.00 0.00 3.53
219 220 1.398390 GCATCTCCGTGTCAATCCAAC 59.602 52.381 0.00 0.00 0.00 3.77
220 221 1.660607 CATCTCCGTGTCAATCCAACG 59.339 52.381 0.00 0.00 37.07 4.10
221 222 0.963225 TCTCCGTGTCAATCCAACGA 59.037 50.000 0.00 0.00 39.64 3.85
222 223 1.548719 TCTCCGTGTCAATCCAACGAT 59.451 47.619 0.00 0.00 39.64 3.73
223 224 2.756207 TCTCCGTGTCAATCCAACGATA 59.244 45.455 0.00 0.00 39.64 2.92
224 225 3.116300 CTCCGTGTCAATCCAACGATAG 58.884 50.000 0.00 0.00 39.64 2.08
239 240 2.398498 CGATAGTACATGCACAGAGGC 58.602 52.381 0.00 0.00 0.00 4.70
240 241 2.398498 GATAGTACATGCACAGAGGCG 58.602 52.381 0.00 0.00 36.28 5.52
241 242 0.459899 TAGTACATGCACAGAGGCGG 59.540 55.000 0.00 0.00 36.28 6.13
242 243 1.218047 GTACATGCACAGAGGCGGA 59.782 57.895 0.00 0.00 36.28 5.54
243 244 0.807667 GTACATGCACAGAGGCGGAG 60.808 60.000 0.00 0.00 36.28 4.63
244 245 1.960040 TACATGCACAGAGGCGGAGG 61.960 60.000 0.00 0.00 36.28 4.30
245 246 2.685017 ATGCACAGAGGCGGAGGA 60.685 61.111 0.00 0.00 36.28 3.71
246 247 2.729479 ATGCACAGAGGCGGAGGAG 61.729 63.158 0.00 0.00 36.28 3.69
247 248 3.071206 GCACAGAGGCGGAGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
248 249 2.888863 CACAGAGGCGGAGGAGAC 59.111 66.667 0.00 0.00 0.00 3.36
250 251 0.394488 CACAGAGGCGGAGGAGACTA 60.394 60.000 0.00 0.00 44.43 2.59
251 252 0.394625 ACAGAGGCGGAGGAGACTAC 60.395 60.000 0.00 0.00 44.43 2.73
252 253 0.394488 CAGAGGCGGAGGAGACTACA 60.394 60.000 0.00 0.00 43.79 2.74
253 254 0.331954 AGAGGCGGAGGAGACTACAA 59.668 55.000 0.00 0.00 43.79 2.41
254 255 0.456628 GAGGCGGAGGAGACTACAAC 59.543 60.000 0.00 0.00 43.79 3.32
255 256 0.251653 AGGCGGAGGAGACTACAACA 60.252 55.000 0.00 0.00 43.79 3.33
256 257 0.606604 GGCGGAGGAGACTACAACAA 59.393 55.000 0.00 0.00 43.79 2.83
257 258 1.404315 GGCGGAGGAGACTACAACAAG 60.404 57.143 0.00 0.00 43.79 3.16
258 259 1.544691 GCGGAGGAGACTACAACAAGA 59.455 52.381 0.00 0.00 43.79 3.02
259 260 2.029290 GCGGAGGAGACTACAACAAGAA 60.029 50.000 0.00 0.00 43.79 2.52
260 261 3.554337 GCGGAGGAGACTACAACAAGAAA 60.554 47.826 0.00 0.00 43.79 2.52
261 262 3.988517 CGGAGGAGACTACAACAAGAAAC 59.011 47.826 0.00 0.00 43.79 2.78
262 263 4.500887 CGGAGGAGACTACAACAAGAAACA 60.501 45.833 0.00 0.00 43.79 2.83
263 264 5.365619 GGAGGAGACTACAACAAGAAACAA 58.634 41.667 0.00 0.00 42.76 2.83
264 265 5.467063 GGAGGAGACTACAACAAGAAACAAG 59.533 44.000 0.00 0.00 42.76 3.16
265 266 6.235231 AGGAGACTACAACAAGAAACAAGA 57.765 37.500 0.00 0.00 40.61 3.02
266 267 6.650120 AGGAGACTACAACAAGAAACAAGAA 58.350 36.000 0.00 0.00 40.61 2.52
267 268 7.283329 AGGAGACTACAACAAGAAACAAGAAT 58.717 34.615 0.00 0.00 40.61 2.40
268 269 7.227512 AGGAGACTACAACAAGAAACAAGAATG 59.772 37.037 0.00 0.00 40.61 2.67
269 270 7.012421 GGAGACTACAACAAGAAACAAGAATGT 59.988 37.037 0.00 0.00 43.14 2.71
307 308 7.832503 ATCAAAATCCCAAGAAAATTAAGCG 57.167 32.000 0.00 0.00 0.00 4.68
308 309 6.162777 TCAAAATCCCAAGAAAATTAAGCGG 58.837 36.000 0.00 0.00 0.00 5.52
309 310 4.736126 AATCCCAAGAAAATTAAGCGGG 57.264 40.909 0.00 0.00 0.00 6.13
310 311 3.443145 TCCCAAGAAAATTAAGCGGGA 57.557 42.857 0.00 0.00 38.91 5.14
311 312 3.768878 TCCCAAGAAAATTAAGCGGGAA 58.231 40.909 0.00 0.00 38.28 3.97
312 313 4.153411 TCCCAAGAAAATTAAGCGGGAAA 58.847 39.130 0.00 0.00 38.28 3.13
313 314 4.775253 TCCCAAGAAAATTAAGCGGGAAAT 59.225 37.500 0.00 0.00 38.28 2.17
314 315 5.247337 TCCCAAGAAAATTAAGCGGGAAATT 59.753 36.000 0.00 0.00 38.28 1.82
315 316 5.937540 CCCAAGAAAATTAAGCGGGAAATTT 59.062 36.000 0.00 0.00 36.98 1.82
316 317 6.429692 CCCAAGAAAATTAAGCGGGAAATTTT 59.570 34.615 11.33 11.33 44.08 1.82
317 318 7.604545 CCCAAGAAAATTAAGCGGGAAATTTTA 59.395 33.333 11.43 0.00 42.42 1.52
318 319 8.655970 CCAAGAAAATTAAGCGGGAAATTTTAG 58.344 33.333 11.43 7.19 42.42 1.85
319 320 8.655970 CAAGAAAATTAAGCGGGAAATTTTAGG 58.344 33.333 11.43 4.54 42.42 2.69
320 321 8.129496 AGAAAATTAAGCGGGAAATTTTAGGA 57.871 30.769 11.43 0.00 42.42 2.94
321 322 8.758829 AGAAAATTAAGCGGGAAATTTTAGGAT 58.241 29.630 11.43 0.00 42.42 3.24
322 323 8.942338 AAAATTAAGCGGGAAATTTTAGGATC 57.058 30.769 10.37 0.00 41.26 3.36
323 324 6.650427 ATTAAGCGGGAAATTTTAGGATCC 57.350 37.500 2.48 2.48 0.00 3.36
324 325 2.945456 AGCGGGAAATTTTAGGATCCC 58.055 47.619 8.55 1.05 46.69 3.85
330 331 6.014771 GGGAAATTTTAGGATCCCTGTAGT 57.985 41.667 8.55 0.00 46.65 2.73
331 332 5.828328 GGGAAATTTTAGGATCCCTGTAGTG 59.172 44.000 8.55 0.00 46.65 2.74
332 333 6.424032 GGAAATTTTAGGATCCCTGTAGTGT 58.576 40.000 8.55 0.00 34.61 3.55
333 334 6.542735 GGAAATTTTAGGATCCCTGTAGTGTC 59.457 42.308 8.55 0.00 34.61 3.67
334 335 6.636454 AATTTTAGGATCCCTGTAGTGTCA 57.364 37.500 8.55 0.00 34.61 3.58
335 336 5.677319 TTTTAGGATCCCTGTAGTGTCAG 57.323 43.478 8.55 0.00 34.61 3.51
336 337 1.490574 AGGATCCCTGTAGTGTCAGC 58.509 55.000 8.55 0.00 34.47 4.26
337 338 1.195115 GGATCCCTGTAGTGTCAGCA 58.805 55.000 0.00 0.00 34.47 4.41
338 339 1.134670 GGATCCCTGTAGTGTCAGCAC 60.135 57.143 0.00 0.00 45.57 4.40
339 340 5.990584 AGGATCCCTGTAGTGTCAGCACA 62.991 52.174 8.55 0.00 39.28 4.57
347 348 3.833706 GTGTCAGCACAACAGCTTC 57.166 52.632 0.00 0.00 43.70 3.86
348 349 0.308993 GTGTCAGCACAACAGCTTCC 59.691 55.000 0.00 0.00 43.70 3.46
349 350 0.819259 TGTCAGCACAACAGCTTCCC 60.819 55.000 0.00 0.00 43.70 3.97
350 351 1.597854 TCAGCACAACAGCTTCCCG 60.598 57.895 0.00 0.00 43.70 5.14
351 352 2.980233 AGCACAACAGCTTCCCGC 60.980 61.111 0.00 0.00 43.70 6.13
352 353 3.286751 GCACAACAGCTTCCCGCA 61.287 61.111 0.00 0.00 42.61 5.69
353 354 2.949106 CACAACAGCTTCCCGCAG 59.051 61.111 0.00 0.00 42.61 5.18
354 355 2.980233 ACAACAGCTTCCCGCAGC 60.980 61.111 0.00 0.00 42.61 5.25
355 356 2.979676 CAACAGCTTCCCGCAGCA 60.980 61.111 0.00 0.00 42.84 4.41
356 357 2.034687 AACAGCTTCCCGCAGCAT 59.965 55.556 0.00 0.00 42.84 3.79
357 358 2.338015 AACAGCTTCCCGCAGCATG 61.338 57.895 0.00 0.00 42.84 4.06
358 359 3.515286 CAGCTTCCCGCAGCATGG 61.515 66.667 0.00 0.00 42.84 3.66
367 368 4.170947 GCAGCATGGGATTCCCTC 57.829 61.111 22.38 11.40 45.70 4.30
368 369 1.228228 GCAGCATGGGATTCCCTCA 59.772 57.895 22.38 3.62 45.70 3.86
369 370 0.822532 GCAGCATGGGATTCCCTCAG 60.823 60.000 22.38 12.72 45.70 3.35
370 371 0.822532 CAGCATGGGATTCCCTCAGC 60.823 60.000 22.38 20.70 45.70 4.26
371 372 1.895707 GCATGGGATTCCCTCAGCG 60.896 63.158 22.38 7.53 45.70 5.18
372 373 1.832219 CATGGGATTCCCTCAGCGA 59.168 57.895 22.38 1.26 45.70 4.93
373 374 0.181114 CATGGGATTCCCTCAGCGAA 59.819 55.000 22.38 0.49 45.70 4.70
374 375 1.143813 ATGGGATTCCCTCAGCGAAT 58.856 50.000 22.38 3.04 45.70 3.34
375 376 0.181114 TGGGATTCCCTCAGCGAATG 59.819 55.000 22.38 0.00 45.70 2.67
376 377 0.469917 GGGATTCCCTCAGCGAATGA 59.530 55.000 14.98 0.00 41.34 2.57
377 378 1.587547 GGATTCCCTCAGCGAATGAC 58.412 55.000 0.00 0.00 33.22 3.06
378 379 1.139853 GGATTCCCTCAGCGAATGACT 59.860 52.381 0.00 0.00 33.22 3.41
379 380 2.208431 GATTCCCTCAGCGAATGACTG 58.792 52.381 0.00 0.00 33.22 3.51
380 381 1.266178 TTCCCTCAGCGAATGACTGA 58.734 50.000 0.00 0.00 41.78 3.41
381 382 1.489481 TCCCTCAGCGAATGACTGAT 58.511 50.000 0.00 0.00 42.99 2.90
382 383 1.833630 TCCCTCAGCGAATGACTGATT 59.166 47.619 0.00 0.00 42.99 2.57
383 384 2.159043 TCCCTCAGCGAATGACTGATTC 60.159 50.000 0.00 0.00 42.99 2.52
384 385 2.208431 CCTCAGCGAATGACTGATTCC 58.792 52.381 0.00 0.00 42.99 3.01
385 386 2.208431 CTCAGCGAATGACTGATTCCC 58.792 52.381 0.00 0.00 42.99 3.97
386 387 0.933097 CAGCGAATGACTGATTCCCG 59.067 55.000 0.00 0.00 37.75 5.14
387 388 0.811616 AGCGAATGACTGATTCCCGC 60.812 55.000 0.00 0.00 37.75 6.13
388 389 1.089481 GCGAATGACTGATTCCCGCA 61.089 55.000 0.00 0.00 37.75 5.69
389 390 0.933097 CGAATGACTGATTCCCGCAG 59.067 55.000 0.00 0.00 37.75 5.18
391 392 1.667724 GAATGACTGATTCCCGCAGTG 59.332 52.381 0.00 0.00 45.94 3.66
392 393 0.745845 ATGACTGATTCCCGCAGTGC 60.746 55.000 4.58 4.58 45.94 4.40
393 394 2.045926 ACTGATTCCCGCAGTGCC 60.046 61.111 10.11 0.00 44.39 5.01
394 395 3.197790 CTGATTCCCGCAGTGCCG 61.198 66.667 10.11 2.47 0.00 5.69
395 396 3.958147 CTGATTCCCGCAGTGCCGT 62.958 63.158 10.11 0.00 0.00 5.68
396 397 3.195698 GATTCCCGCAGTGCCGTC 61.196 66.667 10.11 0.00 0.00 4.79
409 410 2.813474 CCGTCGCATCCGCTCAAA 60.813 61.111 0.00 0.00 35.30 2.69
410 411 2.395690 CGTCGCATCCGCTCAAAC 59.604 61.111 0.00 0.00 35.30 2.93
411 412 2.379634 CGTCGCATCCGCTCAAACA 61.380 57.895 0.00 0.00 35.30 2.83
412 413 1.866237 GTCGCATCCGCTCAAACAA 59.134 52.632 0.00 0.00 35.30 2.83
413 414 0.447801 GTCGCATCCGCTCAAACAAT 59.552 50.000 0.00 0.00 35.30 2.71
414 415 1.663643 GTCGCATCCGCTCAAACAATA 59.336 47.619 0.00 0.00 35.30 1.90
415 416 1.933181 TCGCATCCGCTCAAACAATAG 59.067 47.619 0.00 0.00 35.30 1.73
416 417 1.595489 CGCATCCGCTCAAACAATAGC 60.595 52.381 0.00 0.00 35.30 2.97
417 418 1.268743 GCATCCGCTCAAACAATAGCC 60.269 52.381 0.00 0.00 35.22 3.93
418 419 2.016318 CATCCGCTCAAACAATAGCCA 58.984 47.619 0.00 0.00 35.22 4.75
419 420 1.737838 TCCGCTCAAACAATAGCCAG 58.262 50.000 0.00 0.00 35.22 4.85
420 421 1.277842 TCCGCTCAAACAATAGCCAGA 59.722 47.619 0.00 0.00 35.22 3.86
421 422 1.667724 CCGCTCAAACAATAGCCAGAG 59.332 52.381 0.00 0.00 35.22 3.35
422 423 1.063174 CGCTCAAACAATAGCCAGAGC 59.937 52.381 0.00 0.00 43.61 4.09
423 424 2.086869 GCTCAAACAATAGCCAGAGCA 58.913 47.619 7.29 0.00 45.67 4.26
424 425 2.097142 GCTCAAACAATAGCCAGAGCAG 59.903 50.000 7.29 0.00 45.67 4.24
425 426 2.681848 CTCAAACAATAGCCAGAGCAGG 59.318 50.000 0.00 0.00 43.56 4.85
426 427 2.305635 TCAAACAATAGCCAGAGCAGGA 59.694 45.455 0.00 0.00 43.56 3.86
427 428 2.409948 AACAATAGCCAGAGCAGGAC 57.590 50.000 0.00 0.00 43.56 3.85
428 429 1.577736 ACAATAGCCAGAGCAGGACT 58.422 50.000 0.00 0.00 43.56 3.85
429 430 1.209019 ACAATAGCCAGAGCAGGACTG 59.791 52.381 0.00 0.00 43.56 3.51
430 431 1.483827 CAATAGCCAGAGCAGGACTGA 59.516 52.381 3.00 0.00 43.56 3.41
431 432 2.100128 ATAGCCAGAGCAGGACTGAT 57.900 50.000 3.00 0.00 43.56 2.90
432 433 1.871418 TAGCCAGAGCAGGACTGATT 58.129 50.000 3.00 0.00 43.56 2.57
433 434 0.540923 AGCCAGAGCAGGACTGATTC 59.459 55.000 3.00 0.20 43.56 2.52
434 435 0.540923 GCCAGAGCAGGACTGATTCT 59.459 55.000 3.00 2.55 39.53 2.40
435 436 1.473080 GCCAGAGCAGGACTGATTCTC 60.473 57.143 3.00 0.77 39.53 2.87
436 437 1.202394 CCAGAGCAGGACTGATTCTCG 60.202 57.143 3.00 0.00 37.54 4.04
437 438 1.110442 AGAGCAGGACTGATTCTCGG 58.890 55.000 3.00 0.00 0.00 4.63
438 439 0.103937 GAGCAGGACTGATTCTCGGG 59.896 60.000 3.00 0.00 0.00 5.14
439 440 1.522580 GCAGGACTGATTCTCGGGC 60.523 63.158 3.00 0.00 0.00 6.13
440 441 1.227089 CAGGACTGATTCTCGGGCG 60.227 63.158 0.00 0.00 29.13 6.13
441 442 1.379977 AGGACTGATTCTCGGGCGA 60.380 57.895 0.00 0.00 29.13 5.54
442 443 0.970937 AGGACTGATTCTCGGGCGAA 60.971 55.000 0.00 0.00 29.13 4.70
443 444 0.108329 GGACTGATTCTCGGGCGAAA 60.108 55.000 0.00 0.00 29.13 3.46
444 445 1.281899 GACTGATTCTCGGGCGAAAG 58.718 55.000 0.00 0.00 0.00 2.62
445 446 0.895530 ACTGATTCTCGGGCGAAAGA 59.104 50.000 0.00 0.00 0.00 2.52
446 447 1.275291 ACTGATTCTCGGGCGAAAGAA 59.725 47.619 0.00 0.00 36.05 2.52
447 448 1.661112 CTGATTCTCGGGCGAAAGAAC 59.339 52.381 0.00 0.00 34.52 3.01
448 449 1.007580 GATTCTCGGGCGAAAGAACC 58.992 55.000 0.00 0.00 34.52 3.62
449 450 0.613777 ATTCTCGGGCGAAAGAACCT 59.386 50.000 0.00 0.00 34.52 3.50
450 451 0.320421 TTCTCGGGCGAAAGAACCTG 60.320 55.000 0.00 0.00 0.00 4.00
451 452 1.183030 TCTCGGGCGAAAGAACCTGA 61.183 55.000 0.00 0.00 39.06 3.86
452 453 0.320421 CTCGGGCGAAAGAACCTGAA 60.320 55.000 0.00 0.00 40.81 3.02
453 454 0.320421 TCGGGCGAAAGAACCTGAAG 60.320 55.000 0.00 0.00 38.41 3.02
454 455 1.876664 GGGCGAAAGAACCTGAAGC 59.123 57.895 0.00 0.00 0.00 3.86
455 456 0.889186 GGGCGAAAGAACCTGAAGCA 60.889 55.000 0.00 0.00 0.00 3.91
456 457 0.519077 GGCGAAAGAACCTGAAGCAG 59.481 55.000 0.00 0.00 0.00 4.24
465 466 3.510846 CTGAAGCAGGGCATCAGC 58.489 61.111 10.05 0.00 44.97 4.26
466 467 2.437180 TGAAGCAGGGCATCAGCG 60.437 61.111 0.00 0.00 43.41 5.18
467 468 2.437359 GAAGCAGGGCATCAGCGT 60.437 61.111 0.00 0.00 43.41 5.07
468 469 2.749044 AAGCAGGGCATCAGCGTG 60.749 61.111 0.00 0.00 43.41 5.34
471 472 2.827190 CAGGGCATCAGCGTGCAT 60.827 61.111 12.57 0.02 46.81 3.96
472 473 2.044650 AGGGCATCAGCGTGCATT 60.045 55.556 12.57 0.00 46.81 3.56
473 474 1.679977 AGGGCATCAGCGTGCATTT 60.680 52.632 12.57 0.00 46.81 2.32
474 475 1.216178 GGGCATCAGCGTGCATTTT 59.784 52.632 12.57 0.00 46.81 1.82
475 476 0.803380 GGGCATCAGCGTGCATTTTC 60.803 55.000 12.57 0.00 46.81 2.29
476 477 0.803380 GGCATCAGCGTGCATTTTCC 60.803 55.000 12.57 0.00 46.81 3.13
477 478 0.803380 GCATCAGCGTGCATTTTCCC 60.803 55.000 6.86 0.00 44.43 3.97
478 479 0.523968 CATCAGCGTGCATTTTCCCG 60.524 55.000 0.00 0.00 0.00 5.14
479 480 2.270297 ATCAGCGTGCATTTTCCCGC 62.270 55.000 8.89 8.89 46.07 6.13
483 484 4.398598 GTGCATTTTCCCGCGCGT 62.399 61.111 29.95 5.64 0.00 6.01
484 485 4.397090 TGCATTTTCCCGCGCGTG 62.397 61.111 29.95 19.21 0.00 5.34
502 503 1.728323 TGGGAATCACCACTGTCAGA 58.272 50.000 6.91 0.00 41.20 3.27
503 504 1.625315 TGGGAATCACCACTGTCAGAG 59.375 52.381 6.91 0.00 41.20 3.35
504 505 1.625818 GGGAATCACCACTGTCAGAGT 59.374 52.381 6.91 0.42 41.20 3.24
505 506 2.354203 GGGAATCACCACTGTCAGAGTC 60.354 54.545 6.91 0.00 41.20 3.36
506 507 2.600731 GAATCACCACTGTCAGAGTCG 58.399 52.381 6.91 0.11 29.75 4.18
507 508 0.244994 ATCACCACTGTCAGAGTCGC 59.755 55.000 6.91 0.00 29.75 5.19
508 509 0.823769 TCACCACTGTCAGAGTCGCT 60.824 55.000 6.91 0.00 29.75 4.93
509 510 0.665670 CACCACTGTCAGAGTCGCTG 60.666 60.000 6.91 0.00 46.31 5.18
510 511 1.109920 ACCACTGTCAGAGTCGCTGT 61.110 55.000 6.91 0.00 45.14 4.40
511 512 0.387878 CCACTGTCAGAGTCGCTGTC 60.388 60.000 6.91 0.00 45.14 3.51
512 513 0.727457 CACTGTCAGAGTCGCTGTCG 60.727 60.000 6.91 0.00 45.14 4.35
513 514 1.799519 CTGTCAGAGTCGCTGTCGC 60.800 63.158 3.35 0.00 45.14 5.19
514 515 2.255554 GTCAGAGTCGCTGTCGCA 59.744 61.111 3.35 0.00 45.14 5.10
515 516 2.083522 GTCAGAGTCGCTGTCGCAC 61.084 63.158 3.35 0.00 45.14 5.34
516 517 2.050077 CAGAGTCGCTGTCGCACA 60.050 61.111 0.00 0.00 39.85 4.57
517 518 2.049985 AGAGTCGCTGTCGCACAC 60.050 61.111 0.00 0.00 35.30 3.82
518 519 3.461982 GAGTCGCTGTCGCACACG 61.462 66.667 0.00 0.00 42.01 4.49
523 524 2.742372 GCTGTCGCACACGGGAAT 60.742 61.111 0.00 0.00 40.63 3.01
524 525 2.740714 GCTGTCGCACACGGGAATC 61.741 63.158 0.00 0.00 40.63 2.52
525 526 1.374125 CTGTCGCACACGGGAATCA 60.374 57.895 0.00 0.00 40.63 2.57
526 527 1.354337 CTGTCGCACACGGGAATCAG 61.354 60.000 0.00 0.00 40.63 2.90
527 528 2.434185 TCGCACACGGGAATCAGC 60.434 61.111 0.00 0.00 40.63 4.26
528 529 3.853330 CGCACACGGGAATCAGCG 61.853 66.667 0.00 0.00 39.17 5.18
529 530 4.166011 GCACACGGGAATCAGCGC 62.166 66.667 0.00 0.00 0.00 5.92
530 531 3.499737 CACACGGGAATCAGCGCC 61.500 66.667 2.29 0.00 0.00 6.53
533 534 4.814294 ACGGGAATCAGCGCCGTC 62.814 66.667 2.29 0.00 32.05 4.79
534 535 4.812476 CGGGAATCAGCGCCGTCA 62.812 66.667 2.29 0.00 0.00 4.35
535 536 2.892425 GGGAATCAGCGCCGTCAG 60.892 66.667 2.29 0.00 0.00 3.51
536 537 2.125512 GGAATCAGCGCCGTCAGT 60.126 61.111 2.29 0.00 0.00 3.41
537 538 2.456119 GGAATCAGCGCCGTCAGTG 61.456 63.158 2.29 0.00 0.00 3.66
538 539 1.738099 GAATCAGCGCCGTCAGTGT 60.738 57.895 2.29 0.00 0.00 3.55
539 540 1.687494 GAATCAGCGCCGTCAGTGTC 61.687 60.000 2.29 0.00 0.00 3.67
540 541 2.159819 AATCAGCGCCGTCAGTGTCT 62.160 55.000 2.29 0.00 0.00 3.41
541 542 2.549611 ATCAGCGCCGTCAGTGTCTC 62.550 60.000 2.29 0.00 0.00 3.36
542 543 4.057428 AGCGCCGTCAGTGTCTCC 62.057 66.667 2.29 0.00 0.00 3.71
543 544 4.057428 GCGCCGTCAGTGTCTCCT 62.057 66.667 0.00 0.00 0.00 3.69
544 545 2.651361 CGCCGTCAGTGTCTCCTT 59.349 61.111 0.00 0.00 0.00 3.36
545 546 1.734477 CGCCGTCAGTGTCTCCTTG 60.734 63.158 0.00 0.00 0.00 3.61
546 547 1.367840 GCCGTCAGTGTCTCCTTGT 59.632 57.895 0.00 0.00 0.00 3.16
547 548 0.667792 GCCGTCAGTGTCTCCTTGTC 60.668 60.000 0.00 0.00 0.00 3.18
548 549 0.038159 CCGTCAGTGTCTCCTTGTCC 60.038 60.000 0.00 0.00 0.00 4.02
549 550 0.387367 CGTCAGTGTCTCCTTGTCCG 60.387 60.000 0.00 0.00 0.00 4.79
550 551 0.667792 GTCAGTGTCTCCTTGTCCGC 60.668 60.000 0.00 0.00 0.00 5.54
551 552 0.827925 TCAGTGTCTCCTTGTCCGCT 60.828 55.000 0.00 0.00 0.00 5.52
552 553 0.668706 CAGTGTCTCCTTGTCCGCTG 60.669 60.000 0.00 0.00 0.00 5.18
553 554 1.115930 AGTGTCTCCTTGTCCGCTGT 61.116 55.000 0.00 0.00 0.00 4.40
554 555 0.946221 GTGTCTCCTTGTCCGCTGTG 60.946 60.000 0.00 0.00 0.00 3.66
555 556 1.374758 GTCTCCTTGTCCGCTGTGG 60.375 63.158 0.00 0.00 40.09 4.17
556 557 2.743928 CTCCTTGTCCGCTGTGGC 60.744 66.667 1.39 0.00 37.80 5.01
557 558 3.535629 CTCCTTGTCCGCTGTGGCA 62.536 63.158 1.39 1.24 38.60 4.92
558 559 3.052082 CCTTGTCCGCTGTGGCAG 61.052 66.667 1.39 0.00 38.60 4.85
559 560 2.031012 CTTGTCCGCTGTGGCAGA 59.969 61.111 1.39 0.00 38.60 4.26
560 561 2.031012 TTGTCCGCTGTGGCAGAG 59.969 61.111 7.39 7.39 38.60 3.35
561 562 2.440385 CTTGTCCGCTGTGGCAGAGA 62.440 60.000 16.83 0.00 38.60 3.10
562 563 2.125753 GTCCGCTGTGGCAGAGAG 60.126 66.667 16.83 12.45 38.60 3.20
563 564 3.385384 TCCGCTGTGGCAGAGAGG 61.385 66.667 25.39 25.39 38.60 3.69
608 609 3.406361 GCAGTCACGTCGCCACTG 61.406 66.667 16.32 16.32 40.53 3.66
609 610 3.406361 CAGTCACGTCGCCACTGC 61.406 66.667 10.34 0.00 31.62 4.40
610 611 3.911698 AGTCACGTCGCCACTGCA 61.912 61.111 0.00 0.00 37.32 4.41
611 612 3.406361 GTCACGTCGCCACTGCAG 61.406 66.667 13.48 13.48 37.32 4.41
622 623 4.996434 ACTGCAGCACGGCCTGTC 62.996 66.667 15.27 0.00 35.28 3.51
646 647 3.648982 CGAGCAACAGCCGCAACA 61.649 61.111 0.00 0.00 0.00 3.33
647 648 2.253452 GAGCAACAGCCGCAACAG 59.747 61.111 0.00 0.00 0.00 3.16
648 649 2.203195 AGCAACAGCCGCAACAGA 60.203 55.556 0.00 0.00 0.00 3.41
649 650 2.180131 GAGCAACAGCCGCAACAGAG 62.180 60.000 0.00 0.00 0.00 3.35
650 651 2.949106 CAACAGCCGCAACAGAGG 59.051 61.111 0.00 0.00 0.00 3.69
672 673 4.415150 CTCACTGGGTGGCGGCAT 62.415 66.667 17.19 0.00 33.87 4.40
673 674 4.720902 TCACTGGGTGGCGGCATG 62.721 66.667 17.19 9.30 33.87 4.06
722 723 4.249020 CGGCGCACTGTGCACAAA 62.249 61.111 29.86 0.00 45.36 2.83
723 724 2.655044 GGCGCACTGTGCACAAAC 60.655 61.111 29.86 11.83 45.36 2.93
724 725 2.101965 GCGCACTGTGCACAAACA 59.898 55.556 29.86 0.00 45.36 2.83
734 735 5.235305 CTGTGCACAAACAGTTATATCCC 57.765 43.478 21.98 0.00 42.21 3.85
735 736 3.687212 TGTGCACAAACAGTTATATCCCG 59.313 43.478 19.28 0.00 0.00 5.14
736 737 2.680841 TGCACAAACAGTTATATCCCGC 59.319 45.455 0.00 0.00 0.00 6.13
737 738 2.286184 GCACAAACAGTTATATCCCGCG 60.286 50.000 0.00 0.00 0.00 6.46
738 739 1.937899 ACAAACAGTTATATCCCGCGC 59.062 47.619 0.00 0.00 0.00 6.86
739 740 1.070843 CAAACAGTTATATCCCGCGCG 60.071 52.381 25.67 25.67 0.00 6.86
740 741 0.599204 AACAGTTATATCCCGCGCGG 60.599 55.000 41.00 41.00 0.00 6.46
763 764 4.675029 GCGGTAGGTGCCACGTGT 62.675 66.667 15.65 0.00 0.00 4.49
764 765 2.431942 CGGTAGGTGCCACGTGTC 60.432 66.667 15.65 0.98 0.00 3.67
765 766 2.431942 GGTAGGTGCCACGTGTCG 60.432 66.667 15.65 0.51 0.00 4.35
766 767 3.110178 GTAGGTGCCACGTGTCGC 61.110 66.667 15.65 12.30 0.00 5.19
767 768 4.367023 TAGGTGCCACGTGTCGCC 62.367 66.667 21.04 21.04 0.00 5.54
799 800 3.155167 CCACTAGCGAGGGGGTCC 61.155 72.222 7.34 0.00 43.43 4.46
800 801 3.680920 CCACTAGCGAGGGGGTCCT 62.681 68.421 7.34 0.00 43.43 3.85
801 802 1.686110 CACTAGCGAGGGGGTCCTT 60.686 63.158 0.00 0.00 45.05 3.36
802 803 1.080538 ACTAGCGAGGGGGTCCTTT 59.919 57.895 0.00 0.00 45.05 3.11
803 804 0.546988 ACTAGCGAGGGGGTCCTTTT 60.547 55.000 0.00 0.00 45.05 2.27
804 805 0.618981 CTAGCGAGGGGGTCCTTTTT 59.381 55.000 0.00 0.00 45.05 1.94
805 806 0.326927 TAGCGAGGGGGTCCTTTTTG 59.673 55.000 0.00 0.00 45.05 2.44
806 807 1.074248 GCGAGGGGGTCCTTTTTGA 59.926 57.895 0.00 0.00 45.05 2.69
807 808 1.241990 GCGAGGGGGTCCTTTTTGAC 61.242 60.000 0.00 0.00 45.05 3.18
808 809 0.109723 CGAGGGGGTCCTTTTTGACA 59.890 55.000 0.00 0.00 45.05 3.58
809 810 1.477923 CGAGGGGGTCCTTTTTGACAA 60.478 52.381 0.00 0.00 45.05 3.18
810 811 2.817839 CGAGGGGGTCCTTTTTGACAAT 60.818 50.000 0.00 0.00 45.05 2.71
811 812 3.560453 CGAGGGGGTCCTTTTTGACAATA 60.560 47.826 0.00 0.00 45.05 1.90
812 813 4.610333 GAGGGGGTCCTTTTTGACAATAT 58.390 43.478 0.00 0.00 45.05 1.28
813 814 5.023452 GAGGGGGTCCTTTTTGACAATATT 58.977 41.667 0.00 0.00 45.05 1.28
814 815 5.411493 AGGGGGTCCTTTTTGACAATATTT 58.589 37.500 0.00 0.00 41.56 1.40
815 816 5.849475 AGGGGGTCCTTTTTGACAATATTTT 59.151 36.000 0.00 0.00 41.56 1.82
816 817 6.331572 AGGGGGTCCTTTTTGACAATATTTTT 59.668 34.615 0.00 0.00 41.56 1.94
817 818 6.429692 GGGGGTCCTTTTTGACAATATTTTTG 59.570 38.462 0.00 0.00 36.97 2.44
818 819 7.220740 GGGGTCCTTTTTGACAATATTTTTGA 58.779 34.615 0.00 0.00 36.97 2.69
819 820 7.172532 GGGGTCCTTTTTGACAATATTTTTGAC 59.827 37.037 0.00 0.00 36.97 3.18
820 821 7.713073 GGGTCCTTTTTGACAATATTTTTGACA 59.287 33.333 0.00 0.00 36.97 3.58
821 822 9.271828 GGTCCTTTTTGACAATATTTTTGACAT 57.728 29.630 0.00 0.00 36.97 3.06
823 824 9.829507 TCCTTTTTGACAATATTTTTGACATGT 57.170 25.926 0.00 0.00 0.00 3.21
824 825 9.866936 CCTTTTTGACAATATTTTTGACATGTG 57.133 29.630 1.15 0.00 0.00 3.21
837 838 6.601741 TTTGACATGTGATTTTTCTTTGGC 57.398 33.333 1.15 0.00 0.00 4.52
838 839 5.273674 TGACATGTGATTTTTCTTTGGCA 57.726 34.783 1.15 0.00 0.00 4.92
839 840 5.668471 TGACATGTGATTTTTCTTTGGCAA 58.332 33.333 1.15 0.00 0.00 4.52
840 841 6.289834 TGACATGTGATTTTTCTTTGGCAAT 58.710 32.000 1.15 0.00 0.00 3.56
841 842 6.766944 TGACATGTGATTTTTCTTTGGCAATT 59.233 30.769 1.15 0.00 0.00 2.32
842 843 7.041916 TGACATGTGATTTTTCTTTGGCAATTC 60.042 33.333 1.15 0.00 0.00 2.17
843 844 6.993902 ACATGTGATTTTTCTTTGGCAATTCT 59.006 30.769 0.00 0.00 0.00 2.40
844 845 6.847956 TGTGATTTTTCTTTGGCAATTCTG 57.152 33.333 0.00 0.00 0.00 3.02
845 846 6.347696 TGTGATTTTTCTTTGGCAATTCTGT 58.652 32.000 0.00 0.00 0.00 3.41
846 847 6.822676 TGTGATTTTTCTTTGGCAATTCTGTT 59.177 30.769 0.00 0.00 0.00 3.16
847 848 7.127686 GTGATTTTTCTTTGGCAATTCTGTTG 58.872 34.615 0.00 0.00 0.00 3.33
848 849 6.260493 TGATTTTTCTTTGGCAATTCTGTTGG 59.740 34.615 0.00 0.00 0.00 3.77
849 850 2.818130 TCTTTGGCAATTCTGTTGGC 57.182 45.000 0.00 7.31 44.16 4.52
850 851 1.344114 TCTTTGGCAATTCTGTTGGCC 59.656 47.619 0.00 0.00 46.58 5.36
851 852 0.396060 TTTGGCAATTCTGTTGGCCC 59.604 50.000 0.00 0.00 45.83 5.80
852 853 1.814772 TTGGCAATTCTGTTGGCCCG 61.815 55.000 0.00 0.00 45.83 6.13
853 854 2.573340 GCAATTCTGTTGGCCCGG 59.427 61.111 0.00 0.00 0.00 5.73
854 855 3.005540 GCAATTCTGTTGGCCCGGG 62.006 63.158 19.09 19.09 0.00 5.73
855 856 2.037208 AATTCTGTTGGCCCGGGG 59.963 61.111 25.28 9.31 0.00 5.73
856 857 2.852281 AATTCTGTTGGCCCGGGGT 61.852 57.895 25.28 0.00 0.00 4.95
857 858 2.781431 AATTCTGTTGGCCCGGGGTC 62.781 60.000 25.28 11.77 0.00 4.46
861 862 4.295199 GTTGGCCCGGGGTCCTTT 62.295 66.667 25.28 0.00 0.00 3.11
862 863 3.513566 TTGGCCCGGGGTCCTTTT 61.514 61.111 25.28 0.00 0.00 2.27
863 864 3.819016 TTGGCCCGGGGTCCTTTTG 62.819 63.158 25.28 0.00 0.00 2.44
905 910 1.692173 CCACCCCGACCGAACCATAT 61.692 60.000 0.00 0.00 0.00 1.78
906 911 1.042229 CACCCCGACCGAACCATATA 58.958 55.000 0.00 0.00 0.00 0.86
940 945 4.193334 CGCCGATCTCTCGCCACA 62.193 66.667 0.00 0.00 43.66 4.17
968 980 1.301716 CACTCCACTCCAACCACCG 60.302 63.158 0.00 0.00 0.00 4.94
1818 3405 2.506217 CGGTGCGTGCAGATACGT 60.506 61.111 0.00 0.00 45.36 3.57
2169 3809 3.244112 CGTGAAGACCCTTAGTTTGAGGT 60.244 47.826 0.00 0.00 34.57 3.85
2447 4121 2.157668 CCTCAAAGTGATCACGTTTCGG 59.842 50.000 22.17 19.77 36.20 4.30
2679 4362 2.430694 GGTGAACCTTTGGCTTTTCAGT 59.569 45.455 0.00 0.00 0.00 3.41
2696 4379 1.622811 CAGTGAGGAGCAGACCTTTCT 59.377 52.381 0.00 0.00 40.73 2.52
2760 4445 7.207383 GGGTTAGTTTTGTTTTGCAGTATCTT 58.793 34.615 0.00 0.00 0.00 2.40
2786 4484 5.761003 TGTGATGCACTGTTTTAGATTGTG 58.239 37.500 0.00 0.00 35.11 3.33
2821 4522 2.241941 TGAAGATTGGGCATGCCTCTAA 59.758 45.455 34.70 25.71 36.10 2.10
2822 4523 3.290710 GAAGATTGGGCATGCCTCTAAA 58.709 45.455 34.70 23.06 36.10 1.85
2985 4705 9.755064 CTGGTAGTGTTTCATTTTAGTTATTCG 57.245 33.333 0.00 0.00 0.00 3.34
3027 4766 7.284074 TCTTCGGGTTGATTAATTTAGGCATA 58.716 34.615 0.00 0.00 0.00 3.14
3077 4816 6.586344 ACCAACATTATCACTAGACATCCTG 58.414 40.000 0.00 0.00 0.00 3.86
3105 4844 6.276847 CAATTGTACTTTAAACACCAAGCCA 58.723 36.000 0.00 0.00 0.00 4.75
3123 4862 2.815589 GCCATGACTTTCAGGAGGTTGT 60.816 50.000 0.00 0.00 27.97 3.32
3134 4873 5.152623 TCAGGAGGTTGTATGTTTCTCAG 57.847 43.478 0.00 0.00 0.00 3.35
3138 4877 5.998363 AGGAGGTTGTATGTTTCTCAGTTTC 59.002 40.000 0.00 0.00 0.00 2.78
3160 4899 8.526681 GTTTCGATTTTGCACAAAGATATGATC 58.473 33.333 0.00 0.00 0.00 2.92
3161 4900 6.421405 TCGATTTTGCACAAAGATATGATCG 58.579 36.000 14.73 14.73 36.07 3.69
3171 4913 6.577427 CACAAAGATATGATCGATGCATGTTG 59.423 38.462 2.46 11.34 0.00 3.33
3217 4959 7.283127 TCCTTGTCCTTGCATACTCATATTTTC 59.717 37.037 0.00 0.00 0.00 2.29
3221 4963 7.828717 TGTCCTTGCATACTCATATTTTCTTCA 59.171 33.333 0.00 0.00 0.00 3.02
3282 5025 7.938563 TTTTGCACATACCTTGTCAATTAAC 57.061 32.000 0.00 0.00 36.00 2.01
3317 5064 2.297315 CACAGCTGAACTCCTAGTGACA 59.703 50.000 23.35 0.00 0.00 3.58
3325 5072 3.799432 ACTCCTAGTGACACTCTCAGT 57.201 47.619 12.39 9.17 36.45 3.41
3336 5083 1.135546 CACTCTCAGTGCACTACCTCG 60.136 57.143 21.20 6.94 39.62 4.63
3354 5101 2.743664 CTCGCATTTCAGACCACAATGA 59.256 45.455 0.00 0.00 30.66 2.57
3364 5111 3.006110 CAGACCACAATGATGCCACTTTT 59.994 43.478 0.00 0.00 0.00 2.27
3448 6745 8.875168 TGACCAATTGTTTCCTTAAATACCAAT 58.125 29.630 4.43 0.00 0.00 3.16
3464 6761 8.831715 AAATACCAATTGTCAATTTTCAGGAC 57.168 30.769 15.73 0.00 0.00 3.85
3466 6763 8.877864 ATACCAATTGTCAATTTTCAGGACTA 57.122 30.769 15.73 3.57 32.84 2.59
3512 6809 3.587923 TGATTTTGCACAAAGCTATGGC 58.412 40.909 0.00 0.00 45.94 4.40
3578 6875 5.705609 ATTTCCTTCGTGTTGCACTATTT 57.294 34.783 0.00 0.00 31.34 1.40
3579 6876 6.811253 ATTTCCTTCGTGTTGCACTATTTA 57.189 33.333 0.00 0.00 31.34 1.40
3609 6906 5.506317 GCCATATTCAAGCATCTTGGTGTAC 60.506 44.000 6.71 0.00 0.00 2.90
3619 6916 4.673580 GCATCTTGGTGTACTTGCTTCATG 60.674 45.833 0.00 0.00 0.00 3.07
3624 6926 5.590530 TGGTGTACTTGCTTCATGTTTTT 57.409 34.783 0.00 0.00 0.00 1.94
3659 6961 2.798976 TTTGCTTCATGTTGTCTGCC 57.201 45.000 0.00 0.00 0.00 4.85
3687 6989 5.902613 TGTCAATAAATGAAAGAGCCCAG 57.097 39.130 0.00 0.00 40.50 4.45
3691 6993 2.242882 AAATGAAAGAGCCCAGGCAT 57.757 45.000 12.03 0.00 44.88 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 3.973267 AAGAGCGACGCGAGAAGGC 62.973 63.158 15.93 8.36 0.00 4.35
118 119 1.406970 GAAAGAGCGACGCGAGAAGG 61.407 60.000 15.93 0.00 0.00 3.46
119 120 1.724978 CGAAAGAGCGACGCGAGAAG 61.725 60.000 15.93 1.28 0.00 2.85
120 121 1.796355 CGAAAGAGCGACGCGAGAA 60.796 57.895 15.93 0.00 0.00 2.87
121 122 2.202311 CGAAAGAGCGACGCGAGA 60.202 61.111 15.93 0.00 0.00 4.04
122 123 3.891834 GCGAAAGAGCGACGCGAG 61.892 66.667 15.93 7.68 42.65 5.03
126 127 1.545759 TTCTATGCGAAAGAGCGACG 58.454 50.000 0.00 0.00 40.67 5.12
127 128 2.924290 AGTTTCTATGCGAAAGAGCGAC 59.076 45.455 0.00 0.00 42.01 5.19
128 129 3.232213 AGTTTCTATGCGAAAGAGCGA 57.768 42.857 0.00 0.00 42.01 4.93
129 130 5.332656 GGAATAGTTTCTATGCGAAAGAGCG 60.333 44.000 0.00 0.00 42.01 5.03
130 131 5.523916 TGGAATAGTTTCTATGCGAAAGAGC 59.476 40.000 0.00 0.00 42.01 4.09
131 132 6.291849 CGTGGAATAGTTTCTATGCGAAAGAG 60.292 42.308 0.00 0.00 42.01 2.85
132 133 5.518847 CGTGGAATAGTTTCTATGCGAAAGA 59.481 40.000 0.00 0.00 42.01 2.52
133 134 5.728255 CGTGGAATAGTTTCTATGCGAAAG 58.272 41.667 0.00 0.00 42.01 2.62
134 135 4.033587 GCGTGGAATAGTTTCTATGCGAAA 59.966 41.667 1.38 0.00 42.88 3.46
135 136 3.554324 GCGTGGAATAGTTTCTATGCGAA 59.446 43.478 1.38 0.00 42.88 4.70
136 137 3.120792 GCGTGGAATAGTTTCTATGCGA 58.879 45.455 1.38 0.00 42.88 5.10
137 138 3.505449 GCGTGGAATAGTTTCTATGCG 57.495 47.619 1.38 0.00 42.88 4.73
156 157 0.179215 CGTGAAAGAAGTCGCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
157 158 1.428448 TCGTGAAAGAAGTCGCCATG 58.572 50.000 0.00 0.00 0.00 3.66
158 159 2.163818 TTCGTGAAAGAAGTCGCCAT 57.836 45.000 0.00 0.00 0.00 4.40
159 160 2.066262 GATTCGTGAAAGAAGTCGCCA 58.934 47.619 0.00 0.00 33.19 5.69
160 161 2.338500 AGATTCGTGAAAGAAGTCGCC 58.662 47.619 0.00 0.00 33.19 5.54
161 162 2.987149 TGAGATTCGTGAAAGAAGTCGC 59.013 45.455 0.00 0.00 33.19 5.19
162 163 4.230657 ACTGAGATTCGTGAAAGAAGTCG 58.769 43.478 0.00 0.00 33.19 4.18
163 164 5.117897 GTGACTGAGATTCGTGAAAGAAGTC 59.882 44.000 0.00 0.00 33.19 3.01
164 165 4.985409 GTGACTGAGATTCGTGAAAGAAGT 59.015 41.667 0.00 0.00 33.19 3.01
165 166 5.118357 CAGTGACTGAGATTCGTGAAAGAAG 59.882 44.000 6.79 0.00 32.44 2.85
166 167 4.984785 CAGTGACTGAGATTCGTGAAAGAA 59.015 41.667 6.79 0.00 32.44 2.52
167 168 4.550422 CAGTGACTGAGATTCGTGAAAGA 58.450 43.478 6.79 0.00 32.44 2.52
168 169 3.122613 GCAGTGACTGAGATTCGTGAAAG 59.877 47.826 18.18 0.00 32.44 2.62
169 170 3.059884 GCAGTGACTGAGATTCGTGAAA 58.940 45.455 18.18 0.00 32.44 2.69
170 171 2.610479 GGCAGTGACTGAGATTCGTGAA 60.610 50.000 18.18 0.00 32.44 3.18
171 172 1.067565 GGCAGTGACTGAGATTCGTGA 60.068 52.381 18.18 0.00 32.44 4.35
172 173 1.354040 GGCAGTGACTGAGATTCGTG 58.646 55.000 18.18 0.00 32.44 4.35
173 174 0.247736 GGGCAGTGACTGAGATTCGT 59.752 55.000 18.18 0.00 32.44 3.85
174 175 0.247460 TGGGCAGTGACTGAGATTCG 59.753 55.000 18.18 0.00 32.44 3.34
175 176 2.354259 CTTGGGCAGTGACTGAGATTC 58.646 52.381 18.18 0.00 32.44 2.52
176 177 1.612726 GCTTGGGCAGTGACTGAGATT 60.613 52.381 18.18 0.00 38.54 2.40
177 178 0.035630 GCTTGGGCAGTGACTGAGAT 60.036 55.000 18.18 0.00 38.54 2.75
178 179 1.372683 GCTTGGGCAGTGACTGAGA 59.627 57.895 18.18 0.00 38.54 3.27
179 180 1.673665 GGCTTGGGCAGTGACTGAG 60.674 63.158 18.18 5.69 40.87 3.35
180 181 2.431683 GGCTTGGGCAGTGACTGA 59.568 61.111 18.18 0.00 40.87 3.41
181 182 3.052082 CGGCTTGGGCAGTGACTG 61.052 66.667 8.52 8.52 40.87 3.51
182 183 4.335647 CCGGCTTGGGCAGTGACT 62.336 66.667 0.00 0.00 40.87 3.41
198 199 0.107703 TGGATTGACACGGAGATGCC 60.108 55.000 0.00 0.00 0.00 4.40
199 200 1.398390 GTTGGATTGACACGGAGATGC 59.602 52.381 0.00 0.00 0.00 3.91
200 201 1.660607 CGTTGGATTGACACGGAGATG 59.339 52.381 0.00 0.00 0.00 2.90
201 202 1.548719 TCGTTGGATTGACACGGAGAT 59.451 47.619 0.00 0.00 0.00 2.75
202 203 0.963225 TCGTTGGATTGACACGGAGA 59.037 50.000 0.00 0.00 0.00 3.71
203 204 2.010145 ATCGTTGGATTGACACGGAG 57.990 50.000 0.00 0.00 0.00 4.63
204 205 2.494471 ACTATCGTTGGATTGACACGGA 59.506 45.455 0.00 0.00 34.00 4.69
205 206 2.888594 ACTATCGTTGGATTGACACGG 58.111 47.619 0.00 0.00 34.00 4.94
206 207 4.417506 TGTACTATCGTTGGATTGACACG 58.582 43.478 0.00 0.00 34.00 4.49
207 208 5.276868 GCATGTACTATCGTTGGATTGACAC 60.277 44.000 0.00 0.00 34.00 3.67
208 209 4.808895 GCATGTACTATCGTTGGATTGACA 59.191 41.667 0.00 0.00 34.00 3.58
209 210 4.808895 TGCATGTACTATCGTTGGATTGAC 59.191 41.667 0.00 0.00 34.00 3.18
210 211 4.808895 GTGCATGTACTATCGTTGGATTGA 59.191 41.667 6.69 0.00 34.00 2.57
211 212 4.570369 TGTGCATGTACTATCGTTGGATTG 59.430 41.667 15.25 0.00 34.00 2.67
212 213 4.765273 TGTGCATGTACTATCGTTGGATT 58.235 39.130 15.25 0.00 34.00 3.01
213 214 4.099419 TCTGTGCATGTACTATCGTTGGAT 59.901 41.667 15.25 0.00 36.65 3.41
214 215 3.445805 TCTGTGCATGTACTATCGTTGGA 59.554 43.478 15.25 0.00 0.00 3.53
215 216 3.780902 TCTGTGCATGTACTATCGTTGG 58.219 45.455 15.25 0.00 0.00 3.77
216 217 3.798878 CCTCTGTGCATGTACTATCGTTG 59.201 47.826 15.25 0.00 0.00 4.10
217 218 3.738281 GCCTCTGTGCATGTACTATCGTT 60.738 47.826 15.25 0.00 0.00 3.85
218 219 2.223829 GCCTCTGTGCATGTACTATCGT 60.224 50.000 15.25 0.00 0.00 3.73
219 220 2.398498 GCCTCTGTGCATGTACTATCG 58.602 52.381 15.25 1.98 0.00 2.92
220 221 2.398498 CGCCTCTGTGCATGTACTATC 58.602 52.381 15.25 0.00 0.00 2.08
221 222 1.069204 CCGCCTCTGTGCATGTACTAT 59.931 52.381 15.25 0.00 0.00 2.12
222 223 0.459899 CCGCCTCTGTGCATGTACTA 59.540 55.000 15.25 2.75 0.00 1.82
223 224 1.219124 CCGCCTCTGTGCATGTACT 59.781 57.895 15.25 0.00 0.00 2.73
224 225 0.807667 CTCCGCCTCTGTGCATGTAC 60.808 60.000 7.03 7.03 0.00 2.90
225 226 1.517361 CTCCGCCTCTGTGCATGTA 59.483 57.895 0.00 0.00 0.00 2.29
226 227 2.267006 CTCCGCCTCTGTGCATGT 59.733 61.111 0.00 0.00 0.00 3.21
227 228 2.513204 CCTCCGCCTCTGTGCATG 60.513 66.667 0.00 0.00 0.00 4.06
228 229 2.685017 TCCTCCGCCTCTGTGCAT 60.685 61.111 0.00 0.00 0.00 3.96
229 230 3.385384 CTCCTCCGCCTCTGTGCA 61.385 66.667 0.00 0.00 0.00 4.57
230 231 3.071206 TCTCCTCCGCCTCTGTGC 61.071 66.667 0.00 0.00 0.00 4.57
231 232 0.394488 TAGTCTCCTCCGCCTCTGTG 60.394 60.000 0.00 0.00 0.00 3.66
232 233 0.394625 GTAGTCTCCTCCGCCTCTGT 60.395 60.000 0.00 0.00 0.00 3.41
233 234 0.394488 TGTAGTCTCCTCCGCCTCTG 60.394 60.000 0.00 0.00 0.00 3.35
234 235 0.331954 TTGTAGTCTCCTCCGCCTCT 59.668 55.000 0.00 0.00 0.00 3.69
235 236 0.456628 GTTGTAGTCTCCTCCGCCTC 59.543 60.000 0.00 0.00 0.00 4.70
236 237 0.251653 TGTTGTAGTCTCCTCCGCCT 60.252 55.000 0.00 0.00 0.00 5.52
237 238 0.606604 TTGTTGTAGTCTCCTCCGCC 59.393 55.000 0.00 0.00 0.00 6.13
238 239 1.544691 TCTTGTTGTAGTCTCCTCCGC 59.455 52.381 0.00 0.00 0.00 5.54
239 240 3.936372 TTCTTGTTGTAGTCTCCTCCG 57.064 47.619 0.00 0.00 0.00 4.63
240 241 4.957296 TGTTTCTTGTTGTAGTCTCCTCC 58.043 43.478 0.00 0.00 0.00 4.30
241 242 6.281405 TCTTGTTTCTTGTTGTAGTCTCCTC 58.719 40.000 0.00 0.00 0.00 3.71
242 243 6.235231 TCTTGTTTCTTGTTGTAGTCTCCT 57.765 37.500 0.00 0.00 0.00 3.69
243 244 6.920569 TTCTTGTTTCTTGTTGTAGTCTCC 57.079 37.500 0.00 0.00 0.00 3.71
244 245 7.920738 ACATTCTTGTTTCTTGTTGTAGTCTC 58.079 34.615 0.00 0.00 29.55 3.36
245 246 7.865706 ACATTCTTGTTTCTTGTTGTAGTCT 57.134 32.000 0.00 0.00 29.55 3.24
281 282 9.533253 CGCTTAATTTTCTTGGGATTTTGATAT 57.467 29.630 0.00 0.00 0.00 1.63
282 283 7.978975 CCGCTTAATTTTCTTGGGATTTTGATA 59.021 33.333 0.00 0.00 0.00 2.15
283 284 6.818142 CCGCTTAATTTTCTTGGGATTTTGAT 59.182 34.615 0.00 0.00 0.00 2.57
284 285 6.162777 CCGCTTAATTTTCTTGGGATTTTGA 58.837 36.000 0.00 0.00 0.00 2.69
285 286 5.351189 CCCGCTTAATTTTCTTGGGATTTTG 59.649 40.000 0.00 0.00 37.35 2.44
286 287 5.247337 TCCCGCTTAATTTTCTTGGGATTTT 59.753 36.000 0.00 0.00 39.21 1.82
287 288 4.775253 TCCCGCTTAATTTTCTTGGGATTT 59.225 37.500 0.00 0.00 39.21 2.17
288 289 4.349365 TCCCGCTTAATTTTCTTGGGATT 58.651 39.130 0.00 0.00 39.21 3.01
289 290 3.976015 TCCCGCTTAATTTTCTTGGGAT 58.024 40.909 0.00 0.00 39.21 3.85
290 291 3.443145 TCCCGCTTAATTTTCTTGGGA 57.557 42.857 0.00 0.00 41.75 4.37
291 292 4.529109 TTTCCCGCTTAATTTTCTTGGG 57.471 40.909 0.00 0.00 36.48 4.12
292 293 7.433708 AAAATTTCCCGCTTAATTTTCTTGG 57.566 32.000 0.00 0.00 38.78 3.61
293 294 8.655970 CCTAAAATTTCCCGCTTAATTTTCTTG 58.344 33.333 12.50 7.41 40.91 3.02
294 295 8.590204 TCCTAAAATTTCCCGCTTAATTTTCTT 58.410 29.630 12.50 0.00 40.91 2.52
295 296 8.129496 TCCTAAAATTTCCCGCTTAATTTTCT 57.871 30.769 12.50 0.00 40.91 2.52
296 297 8.942338 ATCCTAAAATTTCCCGCTTAATTTTC 57.058 30.769 12.50 0.00 40.91 2.29
297 298 7.985184 GGATCCTAAAATTTCCCGCTTAATTTT 59.015 33.333 3.84 13.24 42.98 1.82
298 299 7.418597 GGGATCCTAAAATTTCCCGCTTAATTT 60.419 37.037 12.58 0.00 38.59 1.82
299 300 6.041637 GGGATCCTAAAATTTCCCGCTTAATT 59.958 38.462 12.58 0.00 38.59 1.40
300 301 5.538813 GGGATCCTAAAATTTCCCGCTTAAT 59.461 40.000 12.58 0.00 38.59 1.40
301 302 4.891168 GGGATCCTAAAATTTCCCGCTTAA 59.109 41.667 12.58 0.00 38.59 1.85
302 303 4.466827 GGGATCCTAAAATTTCCCGCTTA 58.533 43.478 12.58 0.00 38.59 3.09
303 304 3.296854 GGGATCCTAAAATTTCCCGCTT 58.703 45.455 12.58 0.00 38.59 4.68
304 305 2.945456 GGGATCCTAAAATTTCCCGCT 58.055 47.619 12.58 0.00 38.59 5.52
307 308 5.828328 CACTACAGGGATCCTAAAATTTCCC 59.172 44.000 12.58 2.80 46.94 3.97
308 309 6.424032 ACACTACAGGGATCCTAAAATTTCC 58.576 40.000 12.58 0.00 29.64 3.13
309 310 7.110155 TGACACTACAGGGATCCTAAAATTTC 58.890 38.462 12.58 0.92 29.64 2.17
310 311 7.027874 TGACACTACAGGGATCCTAAAATTT 57.972 36.000 12.58 0.00 29.64 1.82
311 312 6.636454 TGACACTACAGGGATCCTAAAATT 57.364 37.500 12.58 0.00 29.64 1.82
312 313 5.396884 GCTGACACTACAGGGATCCTAAAAT 60.397 44.000 12.58 0.00 38.22 1.82
313 314 4.081087 GCTGACACTACAGGGATCCTAAAA 60.081 45.833 12.58 0.00 38.22 1.52
314 315 3.451178 GCTGACACTACAGGGATCCTAAA 59.549 47.826 12.58 0.00 38.22 1.85
315 316 3.031736 GCTGACACTACAGGGATCCTAA 58.968 50.000 12.58 0.00 38.22 2.69
316 317 2.024369 TGCTGACACTACAGGGATCCTA 60.024 50.000 12.58 0.00 38.22 2.94
317 318 1.273267 TGCTGACACTACAGGGATCCT 60.273 52.381 12.58 0.00 38.22 3.24
318 319 1.134670 GTGCTGACACTACAGGGATCC 60.135 57.143 1.92 1.92 43.85 3.36
319 320 2.301577 GTGCTGACACTACAGGGATC 57.698 55.000 0.00 0.00 43.85 3.36
330 331 0.819259 GGGAAGCTGTTGTGCTGACA 60.819 55.000 0.00 0.00 43.24 3.58
331 332 1.845809 CGGGAAGCTGTTGTGCTGAC 61.846 60.000 0.00 0.00 43.24 3.51
332 333 1.597854 CGGGAAGCTGTTGTGCTGA 60.598 57.895 0.00 0.00 43.24 4.26
333 334 2.949106 CGGGAAGCTGTTGTGCTG 59.051 61.111 0.00 0.00 43.24 4.41
334 335 2.980233 GCGGGAAGCTGTTGTGCT 60.980 61.111 0.00 0.00 46.40 4.40
347 348 2.908940 GGAATCCCATGCTGCGGG 60.909 66.667 6.29 6.29 46.03 6.13
348 349 2.908940 GGGAATCCCATGCTGCGG 60.909 66.667 14.67 0.00 44.65 5.69
357 358 0.469917 TCATTCGCTGAGGGAATCCC 59.530 55.000 20.14 11.16 41.98 3.85
358 359 1.139853 AGTCATTCGCTGAGGGAATCC 59.860 52.381 20.14 14.01 41.98 3.01
359 360 2.159043 TCAGTCATTCGCTGAGGGAATC 60.159 50.000 20.14 11.35 41.98 2.52
360 361 1.833630 TCAGTCATTCGCTGAGGGAAT 59.166 47.619 17.71 17.71 44.10 3.01
361 362 1.266178 TCAGTCATTCGCTGAGGGAA 58.734 50.000 14.44 14.44 37.98 3.97
362 363 1.489481 ATCAGTCATTCGCTGAGGGA 58.511 50.000 0.00 0.00 44.86 4.20
363 364 2.208431 GAATCAGTCATTCGCTGAGGG 58.792 52.381 0.00 0.00 44.86 4.30
364 365 2.208431 GGAATCAGTCATTCGCTGAGG 58.792 52.381 0.00 0.00 44.86 3.86
365 366 2.208431 GGGAATCAGTCATTCGCTGAG 58.792 52.381 0.00 0.00 46.37 3.35
366 367 2.315925 GGGAATCAGTCATTCGCTGA 57.684 50.000 0.00 0.00 46.37 4.26
369 370 1.089481 TGCGGGAATCAGTCATTCGC 61.089 55.000 0.00 0.00 46.39 4.70
370 371 0.933097 CTGCGGGAATCAGTCATTCG 59.067 55.000 0.00 0.00 41.91 3.34
371 372 1.667724 CACTGCGGGAATCAGTCATTC 59.332 52.381 0.00 0.00 42.38 2.67
372 373 1.742761 CACTGCGGGAATCAGTCATT 58.257 50.000 0.00 0.00 42.38 2.57
373 374 0.745845 GCACTGCGGGAATCAGTCAT 60.746 55.000 0.00 0.00 42.38 3.06
374 375 1.375908 GCACTGCGGGAATCAGTCA 60.376 57.895 0.00 0.00 42.38 3.41
375 376 2.109126 GGCACTGCGGGAATCAGTC 61.109 63.158 0.00 0.00 42.38 3.51
376 377 2.045926 GGCACTGCGGGAATCAGT 60.046 61.111 0.00 0.00 44.87 3.41
377 378 3.197790 CGGCACTGCGGGAATCAG 61.198 66.667 0.00 0.00 37.56 2.90
378 379 3.950794 GACGGCACTGCGGGAATCA 62.951 63.158 12.72 0.00 33.14 2.57
379 380 3.195698 GACGGCACTGCGGGAATC 61.196 66.667 12.72 0.00 33.14 2.52
397 398 1.268743 GGCTATTGTTTGAGCGGATGC 60.269 52.381 0.00 0.00 39.72 3.91
398 399 2.016318 TGGCTATTGTTTGAGCGGATG 58.984 47.619 0.00 0.00 39.72 3.51
399 400 2.092968 TCTGGCTATTGTTTGAGCGGAT 60.093 45.455 0.00 0.00 39.72 4.18
400 401 1.277842 TCTGGCTATTGTTTGAGCGGA 59.722 47.619 0.00 0.00 39.72 5.54
401 402 1.667724 CTCTGGCTATTGTTTGAGCGG 59.332 52.381 0.00 0.00 39.72 5.52
402 403 1.063174 GCTCTGGCTATTGTTTGAGCG 59.937 52.381 0.00 0.00 39.72 5.03
403 404 2.086869 TGCTCTGGCTATTGTTTGAGC 58.913 47.619 0.00 0.00 44.77 4.26
404 405 2.681848 CCTGCTCTGGCTATTGTTTGAG 59.318 50.000 0.00 0.00 39.59 3.02
405 406 2.305635 TCCTGCTCTGGCTATTGTTTGA 59.694 45.455 0.00 0.00 39.59 2.69
406 407 2.421424 GTCCTGCTCTGGCTATTGTTTG 59.579 50.000 0.00 0.00 39.59 2.93
407 408 2.307098 AGTCCTGCTCTGGCTATTGTTT 59.693 45.455 0.00 0.00 39.59 2.83
408 409 1.912043 AGTCCTGCTCTGGCTATTGTT 59.088 47.619 0.00 0.00 39.59 2.83
409 410 1.209019 CAGTCCTGCTCTGGCTATTGT 59.791 52.381 0.00 0.00 39.59 2.71
410 411 1.483827 TCAGTCCTGCTCTGGCTATTG 59.516 52.381 0.00 0.00 39.59 1.90
411 412 1.871418 TCAGTCCTGCTCTGGCTATT 58.129 50.000 0.00 0.00 39.59 1.73
412 413 2.100128 ATCAGTCCTGCTCTGGCTAT 57.900 50.000 0.00 0.00 39.59 2.97
413 414 1.759445 GAATCAGTCCTGCTCTGGCTA 59.241 52.381 0.00 0.00 39.59 3.93
414 415 0.540923 GAATCAGTCCTGCTCTGGCT 59.459 55.000 0.00 0.00 39.59 4.75
415 416 0.540923 AGAATCAGTCCTGCTCTGGC 59.459 55.000 0.00 0.00 39.26 4.85
416 417 1.202394 CGAGAATCAGTCCTGCTCTGG 60.202 57.143 4.17 0.72 34.15 3.86
417 418 1.202394 CCGAGAATCAGTCCTGCTCTG 60.202 57.143 4.17 0.00 33.17 3.35
418 419 1.110442 CCGAGAATCAGTCCTGCTCT 58.890 55.000 0.00 0.12 33.17 4.09
419 420 0.103937 CCCGAGAATCAGTCCTGCTC 59.896 60.000 0.00 0.00 33.17 4.26
420 421 1.965754 GCCCGAGAATCAGTCCTGCT 61.966 60.000 0.00 0.00 33.17 4.24
421 422 1.522580 GCCCGAGAATCAGTCCTGC 60.523 63.158 0.00 0.00 33.17 4.85
422 423 1.227089 CGCCCGAGAATCAGTCCTG 60.227 63.158 0.00 0.00 33.17 3.86
423 424 0.970937 TTCGCCCGAGAATCAGTCCT 60.971 55.000 0.00 0.00 33.17 3.85
424 425 0.108329 TTTCGCCCGAGAATCAGTCC 60.108 55.000 0.00 0.00 33.17 3.85
425 426 1.135083 TCTTTCGCCCGAGAATCAGTC 60.135 52.381 0.00 0.00 33.17 3.51
426 427 0.895530 TCTTTCGCCCGAGAATCAGT 59.104 50.000 0.00 0.00 33.17 3.41
427 428 1.661112 GTTCTTTCGCCCGAGAATCAG 59.339 52.381 0.00 0.00 34.68 2.90
428 429 1.674817 GGTTCTTTCGCCCGAGAATCA 60.675 52.381 0.00 0.00 34.04 2.57
429 430 1.007580 GGTTCTTTCGCCCGAGAATC 58.992 55.000 0.00 0.00 34.68 2.52
430 431 0.613777 AGGTTCTTTCGCCCGAGAAT 59.386 50.000 0.00 0.00 34.68 2.40
431 432 0.320421 CAGGTTCTTTCGCCCGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
432 433 1.183030 TCAGGTTCTTTCGCCCGAGA 61.183 55.000 0.00 0.00 0.00 4.04
433 434 0.320421 TTCAGGTTCTTTCGCCCGAG 60.320 55.000 0.00 0.00 0.00 4.63
434 435 0.320421 CTTCAGGTTCTTTCGCCCGA 60.320 55.000 0.00 0.00 0.00 5.14
435 436 1.912371 GCTTCAGGTTCTTTCGCCCG 61.912 60.000 0.00 0.00 0.00 6.13
436 437 0.889186 TGCTTCAGGTTCTTTCGCCC 60.889 55.000 0.00 0.00 0.00 6.13
437 438 0.519077 CTGCTTCAGGTTCTTTCGCC 59.481 55.000 0.00 0.00 0.00 5.54
438 439 0.519077 CCTGCTTCAGGTTCTTTCGC 59.481 55.000 4.74 0.00 45.82 4.70
449 450 2.437180 CGCTGATGCCCTGCTTCA 60.437 61.111 4.83 4.83 39.73 3.02
450 451 2.437359 ACGCTGATGCCCTGCTTC 60.437 61.111 4.19 0.00 37.55 3.86
451 452 2.749044 CACGCTGATGCCCTGCTT 60.749 61.111 4.19 0.00 37.55 3.91
454 455 1.940883 AAATGCACGCTGATGCCCTG 61.941 55.000 0.00 0.00 45.50 4.45
455 456 1.252904 AAAATGCACGCTGATGCCCT 61.253 50.000 0.00 0.00 45.50 5.19
456 457 0.803380 GAAAATGCACGCTGATGCCC 60.803 55.000 0.00 0.00 45.50 5.36
457 458 0.803380 GGAAAATGCACGCTGATGCC 60.803 55.000 0.00 0.00 45.50 4.40
458 459 0.803380 GGGAAAATGCACGCTGATGC 60.803 55.000 0.00 0.00 46.32 3.91
459 460 0.523968 CGGGAAAATGCACGCTGATG 60.524 55.000 0.00 0.00 0.00 3.07
460 461 1.802636 CGGGAAAATGCACGCTGAT 59.197 52.632 0.00 0.00 0.00 2.90
461 462 3.262936 CGGGAAAATGCACGCTGA 58.737 55.556 0.00 0.00 0.00 4.26
466 467 4.398598 ACGCGCGGGAAAATGCAC 62.399 61.111 35.22 0.00 0.00 4.57
467 468 4.397090 CACGCGCGGGAAAATGCA 62.397 61.111 35.22 0.00 0.00 3.96
478 479 3.799755 GTGGTGATTCCCACGCGC 61.800 66.667 5.73 0.00 45.03 6.86
483 484 1.625315 CTCTGACAGTGGTGATTCCCA 59.375 52.381 1.59 0.00 34.77 4.37
484 485 1.625818 ACTCTGACAGTGGTGATTCCC 59.374 52.381 9.22 0.00 32.26 3.97
485 486 2.672478 CGACTCTGACAGTGGTGATTCC 60.672 54.545 9.22 0.00 34.41 3.01
486 487 2.600731 CGACTCTGACAGTGGTGATTC 58.399 52.381 9.22 0.00 34.41 2.52
487 488 1.337260 GCGACTCTGACAGTGGTGATT 60.337 52.381 9.22 0.00 34.41 2.57
488 489 0.244994 GCGACTCTGACAGTGGTGAT 59.755 55.000 9.22 0.00 34.41 3.06
489 490 0.823769 AGCGACTCTGACAGTGGTGA 60.824 55.000 9.22 0.00 34.41 4.02
490 491 0.665670 CAGCGACTCTGACAGTGGTG 60.666 60.000 9.22 6.93 45.72 4.17
491 492 1.109920 ACAGCGACTCTGACAGTGGT 61.110 55.000 9.22 6.52 45.72 4.16
492 493 0.387878 GACAGCGACTCTGACAGTGG 60.388 60.000 9.22 3.56 45.72 4.00
493 494 0.727457 CGACAGCGACTCTGACAGTG 60.727 60.000 1.59 2.34 45.72 3.66
494 495 1.576920 CGACAGCGACTCTGACAGT 59.423 57.895 1.59 0.00 45.72 3.55
495 496 1.799519 GCGACAGCGACTCTGACAG 60.800 63.158 0.00 0.00 45.72 3.51
496 497 2.255554 GCGACAGCGACTCTGACA 59.744 61.111 0.00 0.00 45.72 3.58
506 507 2.740714 GATTCCCGTGTGCGACAGC 61.741 63.158 0.00 0.00 45.41 4.40
507 508 1.354337 CTGATTCCCGTGTGCGACAG 61.354 60.000 0.00 0.00 41.33 3.51
508 509 1.374125 CTGATTCCCGTGTGCGACA 60.374 57.895 0.00 0.00 41.33 4.35
509 510 2.740714 GCTGATTCCCGTGTGCGAC 61.741 63.158 0.00 0.00 41.33 5.19
510 511 2.434185 GCTGATTCCCGTGTGCGA 60.434 61.111 0.00 0.00 41.33 5.10
511 512 3.853330 CGCTGATTCCCGTGTGCG 61.853 66.667 0.00 0.00 37.57 5.34
512 513 4.166011 GCGCTGATTCCCGTGTGC 62.166 66.667 0.00 0.00 0.00 4.57
513 514 3.499737 GGCGCTGATTCCCGTGTG 61.500 66.667 7.64 0.00 0.00 3.82
517 518 4.812476 TGACGGCGCTGATTCCCG 62.812 66.667 25.98 11.16 46.97 5.14
518 519 2.892425 CTGACGGCGCTGATTCCC 60.892 66.667 25.98 6.80 0.00 3.97
519 520 2.125512 ACTGACGGCGCTGATTCC 60.126 61.111 25.98 9.34 0.00 3.01
520 521 1.687494 GACACTGACGGCGCTGATTC 61.687 60.000 25.98 11.89 0.00 2.52
521 522 1.738099 GACACTGACGGCGCTGATT 60.738 57.895 25.98 0.00 0.00 2.57
522 523 2.125912 GACACTGACGGCGCTGAT 60.126 61.111 25.98 7.18 0.00 2.90
523 524 3.268965 GAGACACTGACGGCGCTGA 62.269 63.158 25.98 0.00 0.00 4.26
524 525 2.807045 GAGACACTGACGGCGCTG 60.807 66.667 16.39 16.39 0.00 5.18
525 526 4.057428 GGAGACACTGACGGCGCT 62.057 66.667 6.90 0.00 0.00 5.92
526 527 3.575351 AAGGAGACACTGACGGCGC 62.575 63.158 6.90 0.00 0.00 6.53
527 528 1.734477 CAAGGAGACACTGACGGCG 60.734 63.158 4.80 4.80 0.00 6.46
528 529 0.667792 GACAAGGAGACACTGACGGC 60.668 60.000 0.00 0.00 0.00 5.68
529 530 0.038159 GGACAAGGAGACACTGACGG 60.038 60.000 0.00 0.00 0.00 4.79
530 531 0.387367 CGGACAAGGAGACACTGACG 60.387 60.000 0.00 0.00 0.00 4.35
531 532 0.667792 GCGGACAAGGAGACACTGAC 60.668 60.000 0.00 0.00 0.00 3.51
532 533 0.827925 AGCGGACAAGGAGACACTGA 60.828 55.000 0.00 0.00 0.00 3.41
533 534 0.668706 CAGCGGACAAGGAGACACTG 60.669 60.000 0.00 0.00 0.00 3.66
534 535 1.115930 ACAGCGGACAAGGAGACACT 61.116 55.000 0.00 0.00 0.00 3.55
535 536 0.946221 CACAGCGGACAAGGAGACAC 60.946 60.000 0.00 0.00 0.00 3.67
536 537 1.367471 CACAGCGGACAAGGAGACA 59.633 57.895 0.00 0.00 0.00 3.41
537 538 1.374758 CCACAGCGGACAAGGAGAC 60.375 63.158 0.00 0.00 36.56 3.36
538 539 3.059982 CCACAGCGGACAAGGAGA 58.940 61.111 0.00 0.00 36.56 3.71
539 540 2.743928 GCCACAGCGGACAAGGAG 60.744 66.667 0.00 0.00 36.56 3.69
540 541 3.555324 TGCCACAGCGGACAAGGA 61.555 61.111 0.00 0.00 44.31 3.36
591 592 3.406361 CAGTGGCGACGTGACTGC 61.406 66.667 13.21 0.00 31.31 4.40
592 593 3.406361 GCAGTGGCGACGTGACTG 61.406 66.667 18.55 18.55 40.14 3.51
593 594 3.848347 CTGCAGTGGCGACGTGACT 62.848 63.158 5.25 0.00 45.35 3.41
594 595 3.406361 CTGCAGTGGCGACGTGAC 61.406 66.667 5.25 0.00 45.35 3.67
605 606 4.996434 GACAGGCCGTGCTGCAGT 62.996 66.667 16.64 0.00 0.00 4.40
629 630 3.584250 CTGTTGCGGCTGTTGCTCG 62.584 63.158 0.00 0.00 39.59 5.03
630 631 2.180131 CTCTGTTGCGGCTGTTGCTC 62.180 60.000 0.00 0.00 39.59 4.26
631 632 2.203195 TCTGTTGCGGCTGTTGCT 60.203 55.556 0.00 0.00 39.59 3.91
632 633 2.253452 CTCTGTTGCGGCTGTTGC 59.747 61.111 0.00 0.00 38.76 4.17
633 634 2.949106 CCTCTGTTGCGGCTGTTG 59.051 61.111 0.00 0.00 0.00 3.33
634 635 2.980233 GCCTCTGTTGCGGCTGTT 60.980 61.111 0.00 0.00 40.68 3.16
655 656 4.415150 ATGCCGCCACCCAGTGAG 62.415 66.667 0.00 0.00 35.23 3.51
656 657 4.720902 CATGCCGCCACCCAGTGA 62.721 66.667 0.00 0.00 35.23 3.41
713 714 3.687212 CGGGATATAACTGTTTGTGCACA 59.313 43.478 17.42 17.42 0.00 4.57
714 715 3.486875 GCGGGATATAACTGTTTGTGCAC 60.487 47.826 10.75 10.75 0.00 4.57
715 716 2.680841 GCGGGATATAACTGTTTGTGCA 59.319 45.455 0.00 0.00 0.00 4.57
716 717 2.286184 CGCGGGATATAACTGTTTGTGC 60.286 50.000 0.00 0.00 0.00 4.57
717 718 2.286184 GCGCGGGATATAACTGTTTGTG 60.286 50.000 8.83 0.00 0.00 3.33
718 719 1.937899 GCGCGGGATATAACTGTTTGT 59.062 47.619 8.83 0.00 0.00 2.83
719 720 1.070843 CGCGCGGGATATAACTGTTTG 60.071 52.381 24.84 0.00 0.00 2.93
720 721 1.214367 CGCGCGGGATATAACTGTTT 58.786 50.000 24.84 0.00 0.00 2.83
721 722 0.599204 CCGCGCGGGATATAACTGTT 60.599 55.000 40.50 0.00 38.47 3.16
722 723 1.006571 CCGCGCGGGATATAACTGT 60.007 57.895 40.50 0.00 38.47 3.55
723 724 3.856508 CCGCGCGGGATATAACTG 58.143 61.111 40.50 11.24 38.47 3.16
746 747 4.675029 ACACGTGGCACCTACCGC 62.675 66.667 21.57 0.00 36.83 5.68
747 748 2.431942 GACACGTGGCACCTACCG 60.432 66.667 18.77 2.02 0.00 4.02
748 749 2.431942 CGACACGTGGCACCTACC 60.432 66.667 23.63 0.00 0.00 3.18
749 750 3.110178 GCGACACGTGGCACCTAC 61.110 66.667 23.63 0.48 34.31 3.18
750 751 4.367023 GGCGACACGTGGCACCTA 62.367 66.667 21.44 0.00 35.94 3.08
781 782 3.851128 GACCCCCTCGCTAGTGGC 61.851 72.222 2.90 0.00 37.64 5.01
782 783 3.155167 GGACCCCCTCGCTAGTGG 61.155 72.222 2.90 0.00 0.00 4.00
783 784 1.265454 AAAGGACCCCCTCGCTAGTG 61.265 60.000 0.00 0.00 43.48 2.74
784 785 0.546988 AAAAGGACCCCCTCGCTAGT 60.547 55.000 0.00 0.00 43.48 2.57
785 786 0.618981 AAAAAGGACCCCCTCGCTAG 59.381 55.000 0.00 0.00 43.48 3.42
786 787 0.326927 CAAAAAGGACCCCCTCGCTA 59.673 55.000 0.00 0.00 43.48 4.26
787 788 1.074951 CAAAAAGGACCCCCTCGCT 59.925 57.895 0.00 0.00 43.48 4.93
788 789 1.074248 TCAAAAAGGACCCCCTCGC 59.926 57.895 0.00 0.00 43.48 5.03
789 790 0.109723 TGTCAAAAAGGACCCCCTCG 59.890 55.000 0.00 0.00 43.48 4.63
790 791 2.375014 TTGTCAAAAAGGACCCCCTC 57.625 50.000 0.00 0.00 43.48 4.30
792 793 5.755409 AAATATTGTCAAAAAGGACCCCC 57.245 39.130 0.00 0.00 36.97 5.40
793 794 7.172532 GTCAAAAATATTGTCAAAAAGGACCCC 59.827 37.037 0.00 0.00 36.97 4.95
794 795 7.713073 TGTCAAAAATATTGTCAAAAAGGACCC 59.287 33.333 0.00 0.00 36.97 4.46
795 796 8.655651 TGTCAAAAATATTGTCAAAAAGGACC 57.344 30.769 0.00 0.00 36.97 4.46
797 798 9.829507 ACATGTCAAAAATATTGTCAAAAAGGA 57.170 25.926 0.00 0.00 0.00 3.36
798 799 9.866936 CACATGTCAAAAATATTGTCAAAAAGG 57.133 29.630 0.00 0.00 0.00 3.11
811 812 8.130469 GCCAAAGAAAAATCACATGTCAAAAAT 58.870 29.630 0.00 0.00 0.00 1.82
812 813 7.120285 TGCCAAAGAAAAATCACATGTCAAAAA 59.880 29.630 0.00 0.00 0.00 1.94
813 814 6.596888 TGCCAAAGAAAAATCACATGTCAAAA 59.403 30.769 0.00 0.00 0.00 2.44
814 815 6.111382 TGCCAAAGAAAAATCACATGTCAAA 58.889 32.000 0.00 0.00 0.00 2.69
815 816 5.668471 TGCCAAAGAAAAATCACATGTCAA 58.332 33.333 0.00 0.00 0.00 3.18
816 817 5.273674 TGCCAAAGAAAAATCACATGTCA 57.726 34.783 0.00 0.00 0.00 3.58
817 818 6.790285 ATTGCCAAAGAAAAATCACATGTC 57.210 33.333 0.00 0.00 0.00 3.06
818 819 6.993902 AGAATTGCCAAAGAAAAATCACATGT 59.006 30.769 0.00 0.00 0.00 3.21
819 820 7.041644 ACAGAATTGCCAAAGAAAAATCACATG 60.042 33.333 0.00 0.00 0.00 3.21
820 821 6.993902 ACAGAATTGCCAAAGAAAAATCACAT 59.006 30.769 0.00 0.00 0.00 3.21
821 822 6.347696 ACAGAATTGCCAAAGAAAAATCACA 58.652 32.000 0.00 0.00 0.00 3.58
822 823 6.849588 ACAGAATTGCCAAAGAAAAATCAC 57.150 33.333 0.00 0.00 0.00 3.06
823 824 6.260493 CCAACAGAATTGCCAAAGAAAAATCA 59.740 34.615 0.00 0.00 0.00 2.57
824 825 6.661669 CCAACAGAATTGCCAAAGAAAAATC 58.338 36.000 0.00 0.00 0.00 2.17
825 826 5.008911 GCCAACAGAATTGCCAAAGAAAAAT 59.991 36.000 0.00 0.00 0.00 1.82
826 827 4.335037 GCCAACAGAATTGCCAAAGAAAAA 59.665 37.500 0.00 0.00 0.00 1.94
827 828 3.876320 GCCAACAGAATTGCCAAAGAAAA 59.124 39.130 0.00 0.00 0.00 2.29
828 829 3.465871 GCCAACAGAATTGCCAAAGAAA 58.534 40.909 0.00 0.00 0.00 2.52
829 830 2.224257 GGCCAACAGAATTGCCAAAGAA 60.224 45.455 0.00 0.00 43.46 2.52
830 831 1.344114 GGCCAACAGAATTGCCAAAGA 59.656 47.619 0.00 0.00 43.46 2.52
831 832 1.608801 GGGCCAACAGAATTGCCAAAG 60.609 52.381 4.39 0.00 45.83 2.77
832 833 0.396060 GGGCCAACAGAATTGCCAAA 59.604 50.000 4.39 0.00 45.83 3.28
833 834 1.814772 CGGGCCAACAGAATTGCCAA 61.815 55.000 4.39 0.00 45.83 4.52
834 835 2.274645 CGGGCCAACAGAATTGCCA 61.275 57.895 4.39 0.00 45.83 4.92
835 836 2.573340 CGGGCCAACAGAATTGCC 59.427 61.111 4.39 0.00 43.26 4.52
836 837 2.573340 CCGGGCCAACAGAATTGC 59.427 61.111 4.39 0.00 0.00 3.56
837 838 2.350458 CCCCGGGCCAACAGAATTG 61.350 63.158 17.73 0.00 0.00 2.32
838 839 2.037208 CCCCGGGCCAACAGAATT 59.963 61.111 17.73 0.00 0.00 2.17
839 840 3.264845 ACCCCGGGCCAACAGAAT 61.265 61.111 17.73 0.00 0.00 2.40
840 841 3.961414 GACCCCGGGCCAACAGAA 61.961 66.667 17.73 0.00 0.00 3.02
844 845 3.820825 AAAAGGACCCCGGGCCAAC 62.821 63.158 17.73 4.58 0.00 3.77
845 846 3.513566 AAAAGGACCCCGGGCCAA 61.514 61.111 17.73 0.00 0.00 4.52
846 847 4.293671 CAAAAGGACCCCGGGCCA 62.294 66.667 17.73 0.00 0.00 5.36
848 849 3.974293 TCCAAAAGGACCCCGGGC 61.974 66.667 17.73 1.09 0.00 6.13
849 850 2.035155 GTCCAAAAGGACCCCGGG 59.965 66.667 15.80 15.80 33.21 5.73
850 851 0.468400 TTTGTCCAAAAGGACCCCGG 60.468 55.000 11.79 0.00 38.04 5.73
851 852 1.404843 TTTTGTCCAAAAGGACCCCG 58.595 50.000 11.79 0.00 38.04 5.73
868 869 5.955959 GGGGTGGAGGTATGTTTAGATTTTT 59.044 40.000 0.00 0.00 0.00 1.94
869 870 5.516044 GGGGTGGAGGTATGTTTAGATTTT 58.484 41.667 0.00 0.00 0.00 1.82
870 871 4.384868 CGGGGTGGAGGTATGTTTAGATTT 60.385 45.833 0.00 0.00 0.00 2.17
871 872 3.135895 CGGGGTGGAGGTATGTTTAGATT 59.864 47.826 0.00 0.00 0.00 2.40
872 873 2.704065 CGGGGTGGAGGTATGTTTAGAT 59.296 50.000 0.00 0.00 0.00 1.98
873 874 2.112998 CGGGGTGGAGGTATGTTTAGA 58.887 52.381 0.00 0.00 0.00 2.10
874 875 2.112998 TCGGGGTGGAGGTATGTTTAG 58.887 52.381 0.00 0.00 0.00 1.85
875 876 1.832998 GTCGGGGTGGAGGTATGTTTA 59.167 52.381 0.00 0.00 0.00 2.01
881 882 3.222599 TTCGGTCGGGGTGGAGGTA 62.223 63.158 0.00 0.00 0.00 3.08
905 910 0.875728 CGGCGGATGTTGGTTTTGTA 59.124 50.000 0.00 0.00 0.00 2.41
906 911 1.657556 CGGCGGATGTTGGTTTTGT 59.342 52.632 0.00 0.00 0.00 2.83
940 945 3.305720 TGGAGTGGAGTGAGTAAAGTGT 58.694 45.455 0.00 0.00 0.00 3.55
968 980 1.313091 CGGGAAGCTAGGGTTTTGCC 61.313 60.000 0.00 0.00 0.00 4.52
1818 3405 0.324614 TGCTCTCCATGGCGAAAGAA 59.675 50.000 6.96 0.00 0.00 2.52
2169 3809 0.815095 TCATAGACTCCGAAGCGCAA 59.185 50.000 11.47 0.00 0.00 4.85
2447 4121 4.789075 TGCTTCGCGCGGTACTCC 62.789 66.667 31.69 12.84 43.27 3.85
2679 4362 4.081420 GTCATTAGAAAGGTCTGCTCCTCA 60.081 45.833 0.00 0.00 36.74 3.86
2696 4379 2.627945 GGTGCAACTGGATCGTCATTA 58.372 47.619 0.00 0.00 36.74 1.90
2760 4445 6.207221 ACAATCTAAAACAGTGCATCACATGA 59.793 34.615 0.00 0.00 36.74 3.07
2786 4484 7.229306 TGCCCAATCTTCAGATAACACATATTC 59.771 37.037 0.00 0.00 33.73 1.75
2867 4568 9.579768 GATGGTCATATTGTACAATAGCTCTAG 57.420 37.037 27.40 15.33 36.79 2.43
2927 4633 8.814038 AAAAATTATGAGCAGTCAGGATTACT 57.186 30.769 0.00 0.00 35.66 2.24
2985 4705 6.316390 ACCCGAAGATTCACATTTCAATACTC 59.684 38.462 0.00 0.00 0.00 2.59
3077 4816 6.394025 TGGTGTTTAAAGTACAATTGGTCC 57.606 37.500 10.83 0.00 0.00 4.46
3105 4844 5.505181 ACATACAACCTCCTGAAAGTCAT 57.495 39.130 0.00 0.00 0.00 3.06
3123 4862 6.855914 GTGCAAAATCGAAACTGAGAAACATA 59.144 34.615 0.00 0.00 0.00 2.29
3134 4873 7.795431 TCATATCTTTGTGCAAAATCGAAAC 57.205 32.000 0.00 0.00 0.00 2.78
3138 4877 6.421405 TCGATCATATCTTTGTGCAAAATCG 58.579 36.000 15.30 15.30 0.00 3.34
3160 4899 5.562623 CGATATGATTCAACAACATGCATCG 59.437 40.000 0.00 0.00 31.33 3.84
3161 4900 5.341462 GCGATATGATTCAACAACATGCATC 59.659 40.000 0.00 0.00 0.00 3.91
3171 4913 4.274459 AGGAGCAAAGCGATATGATTCAAC 59.726 41.667 0.00 0.00 0.00 3.18
3271 5014 6.007076 TGTGGGCTCTTATGTTAATTGACAA 58.993 36.000 7.18 0.00 32.47 3.18
3282 5025 1.089920 GCTGTGTGTGGGCTCTTATG 58.910 55.000 0.00 0.00 0.00 1.90
3317 5064 1.169577 CGAGGTAGTGCACTGAGAGT 58.830 55.000 29.57 9.08 0.00 3.24
3325 5072 1.275010 TCTGAAATGCGAGGTAGTGCA 59.725 47.619 0.00 0.00 46.51 4.57
3329 5076 2.271800 GTGGTCTGAAATGCGAGGTAG 58.728 52.381 0.00 0.00 0.00 3.18
3336 5083 3.184541 GCATCATTGTGGTCTGAAATGC 58.815 45.455 0.00 0.00 32.50 3.56
3354 5101 3.508845 AGTGTAGTGGAAAAGTGGCAT 57.491 42.857 0.00 0.00 0.00 4.40
3364 5111 7.553334 CCAAGTAATTTAGCTAGTGTAGTGGA 58.447 38.462 0.00 0.00 0.00 4.02
3416 6713 8.713708 TTTAAGGAAACAATTGGTCAAGGATA 57.286 30.769 10.83 0.00 0.00 2.59
3448 6745 6.823689 GCCTCTATAGTCCTGAAAATTGACAA 59.176 38.462 0.00 0.00 0.00 3.18
3464 6761 7.283625 ACTGAGAAACATACAGCCTCTATAG 57.716 40.000 0.00 0.00 35.38 1.31
3466 6763 6.552445 AACTGAGAAACATACAGCCTCTAT 57.448 37.500 0.00 0.00 35.38 1.98
3512 6809 6.317088 AGTGAATAGAATTGAACAACATGCG 58.683 36.000 0.00 0.00 0.00 4.73
3578 6875 7.175467 CCAAGATGCTTGAATATGGCAGTAATA 59.825 37.037 8.64 0.00 39.38 0.98
3579 6876 6.015688 CCAAGATGCTTGAATATGGCAGTAAT 60.016 38.462 8.64 0.00 39.38 1.89
3599 6896 4.085357 ACATGAAGCAAGTACACCAAGA 57.915 40.909 0.00 0.00 0.00 3.02
3625 6927 4.277174 TGAAGCAAATACTCCTCGCAAAAA 59.723 37.500 0.00 0.00 0.00 1.94
3631 6933 4.393062 ACAACATGAAGCAAATACTCCTCG 59.607 41.667 0.00 0.00 0.00 4.63
3659 6961 7.415653 GGGCTCTTTCATTTATTGACAAGGTAG 60.416 40.741 0.00 0.00 32.84 3.18
3687 6989 4.061596 GTCAATAGGAGTTCAGCTATGCC 58.938 47.826 0.00 0.00 0.00 4.40
3691 6993 3.451178 GGGTGTCAATAGGAGTTCAGCTA 59.549 47.826 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.