Multiple sequence alignment - TraesCS5B01G057600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G057600 chr5B 100.000 3641 0 0 1 3641 63532102 63535742 0.000000e+00 6724.0
1 TraesCS5B01G057600 chr5B 95.971 2457 82 5 861 3314 62033695 62031253 0.000000e+00 3973.0
2 TraesCS5B01G057600 chr5A 94.155 3268 140 24 403 3637 46703409 46706658 0.000000e+00 4929.0
3 TraesCS5B01G057600 chr5A 91.111 45 2 2 3121 3163 401755799 401755755 3.930000e-05 60.2
4 TraesCS5B01G057600 chr5A 100.000 28 0 0 853 880 30214307 30214280 7.000000e-03 52.8
5 TraesCS5B01G057600 chr5D 95.883 2453 92 6 862 3314 58496617 58499060 0.000000e+00 3962.0
6 TraesCS5B01G057600 chr5D 89.796 49 5 0 3115 3163 297314780 297314828 3.040000e-06 63.9
7 TraesCS5B01G057600 chr4A 91.837 49 3 1 3115 3163 636098219 636098172 2.350000e-07 67.6
8 TraesCS5B01G057600 chr2A 100.000 28 0 0 3134 3161 524501281 524501308 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G057600 chr5B 63532102 63535742 3640 False 6724 6724 100.000 1 3641 1 chr5B.!!$F1 3640
1 TraesCS5B01G057600 chr5B 62031253 62033695 2442 True 3973 3973 95.971 861 3314 1 chr5B.!!$R1 2453
2 TraesCS5B01G057600 chr5A 46703409 46706658 3249 False 4929 4929 94.155 403 3637 1 chr5A.!!$F1 3234
3 TraesCS5B01G057600 chr5D 58496617 58499060 2443 False 3962 3962 95.883 862 3314 1 chr5D.!!$F1 2452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 886 0.743688 TTTGCGCAACAGGAACACAT 59.256 45.000 24.99 0.0 0.00 3.21 F
930 959 1.001597 GTAATCGGACGGCTCCTGTAG 60.002 57.143 0.00 0.0 33.79 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 2311 0.457166 CGTGCCCTCGACGAAACATA 60.457 55.0 0.00 0.0 39.21 2.29 R
2887 2924 0.323360 TATGGGGAAGGCTTGTGTGC 60.323 55.0 3.46 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.539770 CAAGCCATATTATCAAGTACAGTAGG 57.460 38.462 0.00 0.00 0.00 3.18
26 27 8.367911 CAAGCCATATTATCAAGTACAGTAGGA 58.632 37.037 0.00 0.00 0.00 2.94
27 28 8.492415 AGCCATATTATCAAGTACAGTAGGAA 57.508 34.615 0.00 0.00 0.00 3.36
28 29 8.934697 AGCCATATTATCAAGTACAGTAGGAAA 58.065 33.333 0.00 0.00 0.00 3.13
29 30 9.726438 GCCATATTATCAAGTACAGTAGGAAAT 57.274 33.333 0.00 0.00 0.00 2.17
38 39 9.706691 TCAAGTACAGTAGGAAATAACAAGAAG 57.293 33.333 0.00 0.00 0.00 2.85
39 40 9.706691 CAAGTACAGTAGGAAATAACAAGAAGA 57.293 33.333 0.00 0.00 0.00 2.87
41 42 9.877178 AGTACAGTAGGAAATAACAAGAAGATG 57.123 33.333 0.00 0.00 0.00 2.90
42 43 9.654663 GTACAGTAGGAAATAACAAGAAGATGT 57.345 33.333 0.00 0.00 34.24 3.06
44 45 9.574516 ACAGTAGGAAATAACAAGAAGATGTTT 57.425 29.630 0.00 0.00 40.52 2.83
47 48 9.626045 GTAGGAAATAACAAGAAGATGTTTTGG 57.374 33.333 0.00 0.00 40.52 3.28
48 49 7.154656 AGGAAATAACAAGAAGATGTTTTGGC 58.845 34.615 0.00 0.00 40.52 4.52
49 50 6.368791 GGAAATAACAAGAAGATGTTTTGGCC 59.631 38.462 0.00 0.00 40.52 5.36
50 51 3.751479 AACAAGAAGATGTTTTGGCCC 57.249 42.857 0.00 0.00 40.52 5.80
51 52 2.676748 ACAAGAAGATGTTTTGGCCCA 58.323 42.857 0.00 0.00 0.00 5.36
52 53 3.037549 ACAAGAAGATGTTTTGGCCCAA 58.962 40.909 0.00 0.00 0.00 4.12
53 54 3.070015 ACAAGAAGATGTTTTGGCCCAAG 59.930 43.478 0.00 0.00 0.00 3.61
54 55 2.962859 AGAAGATGTTTTGGCCCAAGT 58.037 42.857 0.00 0.00 0.00 3.16
55 56 2.893489 AGAAGATGTTTTGGCCCAAGTC 59.107 45.455 0.00 0.00 0.00 3.01
56 57 2.380064 AGATGTTTTGGCCCAAGTCA 57.620 45.000 0.00 0.58 0.00 3.41
57 58 2.893424 AGATGTTTTGGCCCAAGTCAT 58.107 42.857 12.91 12.91 0.00 3.06
58 59 4.046286 AGATGTTTTGGCCCAAGTCATA 57.954 40.909 12.99 0.00 0.00 2.15
59 60 4.613437 AGATGTTTTGGCCCAAGTCATAT 58.387 39.130 12.99 8.97 0.00 1.78
60 61 5.025453 AGATGTTTTGGCCCAAGTCATATT 58.975 37.500 12.99 5.20 0.00 1.28
61 62 6.194235 AGATGTTTTGGCCCAAGTCATATTA 58.806 36.000 12.99 0.00 0.00 0.98
62 63 6.840705 AGATGTTTTGGCCCAAGTCATATTAT 59.159 34.615 12.99 1.84 0.00 1.28
63 64 6.463995 TGTTTTGGCCCAAGTCATATTATC 57.536 37.500 0.00 0.00 0.00 1.75
64 65 5.954752 TGTTTTGGCCCAAGTCATATTATCA 59.045 36.000 0.00 0.00 0.00 2.15
65 66 6.438741 TGTTTTGGCCCAAGTCATATTATCAA 59.561 34.615 0.00 0.00 0.00 2.57
66 67 6.713762 TTTGGCCCAAGTCATATTATCAAG 57.286 37.500 0.00 0.00 0.00 3.02
67 68 5.387113 TGGCCCAAGTCATATTATCAAGT 57.613 39.130 0.00 0.00 0.00 3.16
68 69 6.508030 TGGCCCAAGTCATATTATCAAGTA 57.492 37.500 0.00 0.00 0.00 2.24
69 70 6.296026 TGGCCCAAGTCATATTATCAAGTAC 58.704 40.000 0.00 0.00 0.00 2.73
70 71 6.126623 TGGCCCAAGTCATATTATCAAGTACA 60.127 38.462 0.00 0.00 0.00 2.90
71 72 6.428159 GGCCCAAGTCATATTATCAAGTACAG 59.572 42.308 0.00 0.00 0.00 2.74
72 73 6.992715 GCCCAAGTCATATTATCAAGTACAGT 59.007 38.462 0.00 0.00 0.00 3.55
73 74 8.148351 GCCCAAGTCATATTATCAAGTACAGTA 58.852 37.037 0.00 0.00 0.00 2.74
74 75 9.698309 CCCAAGTCATATTATCAAGTACAGTAG 57.302 37.037 0.00 0.00 0.00 2.57
75 76 9.698309 CCAAGTCATATTATCAAGTACAGTAGG 57.302 37.037 0.00 0.00 0.00 3.18
87 88 8.660295 TCAAGTACAGTAGGAAATAAGGAAGA 57.340 34.615 0.00 0.00 0.00 2.87
88 89 8.750298 TCAAGTACAGTAGGAAATAAGGAAGAG 58.250 37.037 0.00 0.00 0.00 2.85
89 90 8.750298 CAAGTACAGTAGGAAATAAGGAAGAGA 58.250 37.037 0.00 0.00 0.00 3.10
90 91 8.528044 AGTACAGTAGGAAATAAGGAAGAGAG 57.472 38.462 0.00 0.00 0.00 3.20
91 92 6.800072 ACAGTAGGAAATAAGGAAGAGAGG 57.200 41.667 0.00 0.00 0.00 3.69
92 93 5.129650 ACAGTAGGAAATAAGGAAGAGAGGC 59.870 44.000 0.00 0.00 0.00 4.70
93 94 5.129485 CAGTAGGAAATAAGGAAGAGAGGCA 59.871 44.000 0.00 0.00 0.00 4.75
94 95 5.908247 AGTAGGAAATAAGGAAGAGAGGCAT 59.092 40.000 0.00 0.00 0.00 4.40
95 96 5.303259 AGGAAATAAGGAAGAGAGGCATC 57.697 43.478 0.00 0.00 0.00 3.91
96 97 4.103943 AGGAAATAAGGAAGAGAGGCATCC 59.896 45.833 0.00 0.00 0.00 3.51
97 98 4.141390 GGAAATAAGGAAGAGAGGCATCCA 60.141 45.833 0.00 0.00 35.62 3.41
98 99 5.457342 GGAAATAAGGAAGAGAGGCATCCAT 60.457 44.000 0.00 0.00 35.62 3.41
99 100 4.637387 ATAAGGAAGAGAGGCATCCATG 57.363 45.455 0.00 0.00 35.62 3.66
100 101 2.187239 AGGAAGAGAGGCATCCATGA 57.813 50.000 0.00 0.00 35.62 3.07
101 102 2.048601 AGGAAGAGAGGCATCCATGAG 58.951 52.381 0.00 0.00 35.62 2.90
102 103 2.045524 GGAAGAGAGGCATCCATGAGA 58.954 52.381 0.00 0.00 33.30 3.27
103 104 2.224257 GGAAGAGAGGCATCCATGAGAC 60.224 54.545 0.00 0.00 33.30 3.36
104 105 2.475339 AGAGAGGCATCCATGAGACT 57.525 50.000 0.00 0.00 0.00 3.24
105 106 2.318908 AGAGAGGCATCCATGAGACTC 58.681 52.381 7.34 7.34 0.00 3.36
106 107 2.037901 GAGAGGCATCCATGAGACTCA 58.962 52.381 7.80 7.80 31.46 3.41
107 108 1.761784 AGAGGCATCCATGAGACTCAC 59.238 52.381 7.47 0.00 31.46 3.51
108 109 1.483827 GAGGCATCCATGAGACTCACA 59.516 52.381 7.47 0.00 0.00 3.58
109 110 2.104451 GAGGCATCCATGAGACTCACAT 59.896 50.000 7.47 0.00 0.00 3.21
110 111 2.508716 AGGCATCCATGAGACTCACATT 59.491 45.455 7.47 0.00 0.00 2.71
111 112 2.617308 GGCATCCATGAGACTCACATTG 59.383 50.000 7.47 2.28 0.00 2.82
112 113 2.617308 GCATCCATGAGACTCACATTGG 59.383 50.000 14.94 14.94 0.00 3.16
113 114 3.683564 GCATCCATGAGACTCACATTGGA 60.684 47.826 22.60 22.60 33.36 3.53
114 115 4.520179 CATCCATGAGACTCACATTGGAA 58.480 43.478 23.66 11.92 32.95 3.53
115 116 4.639078 TCCATGAGACTCACATTGGAAA 57.361 40.909 19.55 3.17 0.00 3.13
116 117 5.183530 TCCATGAGACTCACATTGGAAAT 57.816 39.130 19.55 0.00 0.00 2.17
117 118 5.573219 TCCATGAGACTCACATTGGAAATT 58.427 37.500 19.55 0.00 0.00 1.82
118 119 5.649395 TCCATGAGACTCACATTGGAAATTC 59.351 40.000 19.55 0.00 0.00 2.17
119 120 5.651139 CCATGAGACTCACATTGGAAATTCT 59.349 40.000 15.75 0.00 0.00 2.40
120 121 6.183360 CCATGAGACTCACATTGGAAATTCTC 60.183 42.308 15.75 0.00 0.00 2.87
121 122 5.868454 TGAGACTCACATTGGAAATTCTCA 58.132 37.500 0.00 0.00 0.00 3.27
122 123 6.298361 TGAGACTCACATTGGAAATTCTCAA 58.702 36.000 0.00 0.00 0.00 3.02
123 124 6.772233 TGAGACTCACATTGGAAATTCTCAAA 59.228 34.615 0.00 0.00 0.00 2.69
124 125 7.040892 TGAGACTCACATTGGAAATTCTCAAAG 60.041 37.037 0.00 0.00 0.00 2.77
125 126 7.000472 AGACTCACATTGGAAATTCTCAAAGA 59.000 34.615 6.49 3.60 0.00 2.52
126 127 7.503566 AGACTCACATTGGAAATTCTCAAAGAA 59.496 33.333 6.49 0.00 38.78 2.52
127 128 8.186709 ACTCACATTGGAAATTCTCAAAGAAT 57.813 30.769 6.49 0.00 46.22 2.40
128 129 9.300681 ACTCACATTGGAAATTCTCAAAGAATA 57.699 29.630 2.79 0.00 43.67 1.75
129 130 9.565213 CTCACATTGGAAATTCTCAAAGAATAC 57.435 33.333 2.79 1.73 43.67 1.89
130 131 9.300681 TCACATTGGAAATTCTCAAAGAATACT 57.699 29.630 2.79 0.00 43.67 2.12
131 132 9.918630 CACATTGGAAATTCTCAAAGAATACTT 57.081 29.630 2.79 0.00 43.67 2.24
132 133 9.918630 ACATTGGAAATTCTCAAAGAATACTTG 57.081 29.630 2.79 3.39 43.67 3.16
133 134 8.866956 CATTGGAAATTCTCAAAGAATACTTGC 58.133 33.333 2.79 1.80 43.67 4.01
134 135 7.765695 TGGAAATTCTCAAAGAATACTTGCT 57.234 32.000 2.79 0.00 43.67 3.91
135 136 8.181904 TGGAAATTCTCAAAGAATACTTGCTT 57.818 30.769 2.79 0.00 43.67 3.91
136 137 8.084073 TGGAAATTCTCAAAGAATACTTGCTTG 58.916 33.333 2.79 0.00 43.67 4.01
137 138 8.299570 GGAAATTCTCAAAGAATACTTGCTTGA 58.700 33.333 2.79 0.00 43.67 3.02
138 139 9.122613 GAAATTCTCAAAGAATACTTGCTTGAC 57.877 33.333 2.79 0.00 43.67 3.18
139 140 6.560253 TTCTCAAAGAATACTTGCTTGACC 57.440 37.500 0.00 0.00 36.39 4.02
140 141 5.869579 TCTCAAAGAATACTTGCTTGACCT 58.130 37.500 0.00 0.00 36.39 3.85
141 142 7.004555 TCTCAAAGAATACTTGCTTGACCTA 57.995 36.000 0.00 0.00 36.39 3.08
142 143 7.624549 TCTCAAAGAATACTTGCTTGACCTAT 58.375 34.615 0.00 0.00 36.39 2.57
143 144 7.766278 TCTCAAAGAATACTTGCTTGACCTATC 59.234 37.037 0.00 0.00 36.39 2.08
144 145 7.394016 TCAAAGAATACTTGCTTGACCTATCA 58.606 34.615 0.00 0.00 36.39 2.15
145 146 7.882791 TCAAAGAATACTTGCTTGACCTATCAA 59.117 33.333 0.00 0.00 38.20 2.57
160 161 7.864686 TGACCTATCAAGCAAATATGAATTCG 58.135 34.615 0.04 0.00 0.00 3.34
161 162 7.498900 TGACCTATCAAGCAAATATGAATTCGT 59.501 33.333 5.33 5.33 0.00 3.85
162 163 7.642669 ACCTATCAAGCAAATATGAATTCGTG 58.357 34.615 10.54 0.17 0.00 4.35
163 164 6.580041 CCTATCAAGCAAATATGAATTCGTGC 59.420 38.462 10.54 9.53 31.63 5.34
164 165 4.671377 TCAAGCAAATATGAATTCGTGCC 58.329 39.130 10.54 0.00 31.78 5.01
165 166 4.157472 TCAAGCAAATATGAATTCGTGCCA 59.843 37.500 10.54 0.00 31.78 4.92
166 167 4.717233 AGCAAATATGAATTCGTGCCAA 57.283 36.364 10.54 0.00 31.78 4.52
167 168 4.423732 AGCAAATATGAATTCGTGCCAAC 58.576 39.130 10.54 0.00 31.78 3.77
168 169 4.082300 AGCAAATATGAATTCGTGCCAACA 60.082 37.500 10.54 0.00 31.78 3.33
169 170 4.031652 GCAAATATGAATTCGTGCCAACAC 59.968 41.667 10.54 0.00 43.76 3.32
170 171 5.401550 CAAATATGAATTCGTGCCAACACT 58.598 37.500 10.54 0.00 45.10 3.55
171 172 6.550843 CAAATATGAATTCGTGCCAACACTA 58.449 36.000 10.54 0.00 45.10 2.74
172 173 6.942532 AATATGAATTCGTGCCAACACTAT 57.057 33.333 10.54 0.00 45.10 2.12
173 174 8.341903 CAAATATGAATTCGTGCCAACACTATA 58.658 33.333 10.54 0.00 45.10 1.31
174 175 8.445275 AATATGAATTCGTGCCAACACTATAA 57.555 30.769 10.54 0.00 45.10 0.98
175 176 6.942532 ATGAATTCGTGCCAACACTATAAT 57.057 33.333 0.00 0.00 45.10 1.28
176 177 6.358118 TGAATTCGTGCCAACACTATAATC 57.642 37.500 0.04 0.00 45.10 1.75
177 178 5.006261 TGAATTCGTGCCAACACTATAATCG 59.994 40.000 0.04 0.00 45.10 3.34
178 179 3.786516 TCGTGCCAACACTATAATCGA 57.213 42.857 0.00 0.00 45.10 3.59
179 180 4.112716 TCGTGCCAACACTATAATCGAA 57.887 40.909 0.00 0.00 45.10 3.71
180 181 4.496360 TCGTGCCAACACTATAATCGAAA 58.504 39.130 0.00 0.00 45.10 3.46
181 182 5.113383 TCGTGCCAACACTATAATCGAAAT 58.887 37.500 0.00 0.00 45.10 2.17
182 183 5.583061 TCGTGCCAACACTATAATCGAAATT 59.417 36.000 0.00 0.00 45.10 1.82
183 184 6.092944 TCGTGCCAACACTATAATCGAAATTT 59.907 34.615 0.00 0.00 45.10 1.82
184 185 7.278203 TCGTGCCAACACTATAATCGAAATTTA 59.722 33.333 0.00 0.00 45.10 1.40
185 186 7.372396 CGTGCCAACACTATAATCGAAATTTAC 59.628 37.037 0.00 0.00 45.10 2.01
186 187 8.395633 GTGCCAACACTATAATCGAAATTTACT 58.604 33.333 0.00 0.00 43.85 2.24
187 188 8.952278 TGCCAACACTATAATCGAAATTTACTT 58.048 29.630 0.00 0.00 0.00 2.24
188 189 9.783256 GCCAACACTATAATCGAAATTTACTTT 57.217 29.630 0.00 0.00 0.00 2.66
211 212 9.346725 CTTTCAGAAGTTTTAATATGACCAAGC 57.653 33.333 0.00 0.00 0.00 4.01
212 213 7.994425 TCAGAAGTTTTAATATGACCAAGCA 57.006 32.000 0.00 0.00 0.00 3.91
213 214 8.402798 TCAGAAGTTTTAATATGACCAAGCAA 57.597 30.769 0.00 0.00 0.00 3.91
214 215 8.514594 TCAGAAGTTTTAATATGACCAAGCAAG 58.485 33.333 0.00 0.00 0.00 4.01
215 216 8.299570 CAGAAGTTTTAATATGACCAAGCAAGT 58.700 33.333 0.00 0.00 0.00 3.16
216 217 8.860088 AGAAGTTTTAATATGACCAAGCAAGTT 58.140 29.630 0.00 0.00 0.00 2.66
217 218 9.476202 GAAGTTTTAATATGACCAAGCAAGTTT 57.524 29.630 0.00 0.00 0.00 2.66
222 223 8.815565 TTAATATGACCAAGCAAGTTTATCCA 57.184 30.769 0.00 0.00 0.00 3.41
223 224 6.699575 ATATGACCAAGCAAGTTTATCCAC 57.300 37.500 0.00 0.00 0.00 4.02
224 225 4.098914 TGACCAAGCAAGTTTATCCACT 57.901 40.909 0.00 0.00 0.00 4.00
225 226 4.072131 TGACCAAGCAAGTTTATCCACTC 58.928 43.478 0.00 0.00 0.00 3.51
226 227 4.202461 TGACCAAGCAAGTTTATCCACTCT 60.202 41.667 0.00 0.00 0.00 3.24
227 228 5.012664 TGACCAAGCAAGTTTATCCACTCTA 59.987 40.000 0.00 0.00 0.00 2.43
228 229 5.491982 ACCAAGCAAGTTTATCCACTCTAG 58.508 41.667 0.00 0.00 0.00 2.43
229 230 4.878397 CCAAGCAAGTTTATCCACTCTAGG 59.122 45.833 0.00 0.00 0.00 3.02
230 231 4.762289 AGCAAGTTTATCCACTCTAGGG 57.238 45.455 0.00 0.00 0.00 3.53
231 232 4.104831 AGCAAGTTTATCCACTCTAGGGT 58.895 43.478 0.00 0.00 0.00 4.34
232 233 4.080863 AGCAAGTTTATCCACTCTAGGGTG 60.081 45.833 16.36 16.36 37.00 4.61
233 234 4.323562 GCAAGTTTATCCACTCTAGGGTGT 60.324 45.833 21.26 6.55 35.63 4.16
234 235 5.803470 GCAAGTTTATCCACTCTAGGGTGTT 60.803 44.000 21.26 10.88 35.63 3.32
235 236 6.238648 CAAGTTTATCCACTCTAGGGTGTTT 58.761 40.000 21.26 10.53 35.63 2.83
236 237 6.051179 AGTTTATCCACTCTAGGGTGTTTC 57.949 41.667 21.26 5.88 35.63 2.78
237 238 5.546499 AGTTTATCCACTCTAGGGTGTTTCA 59.454 40.000 21.26 2.89 35.63 2.69
238 239 6.043938 AGTTTATCCACTCTAGGGTGTTTCAA 59.956 38.462 21.26 7.05 35.63 2.69
239 240 4.993705 ATCCACTCTAGGGTGTTTCAAA 57.006 40.909 21.26 0.40 35.63 2.69
240 241 4.993705 TCCACTCTAGGGTGTTTCAAAT 57.006 40.909 21.26 0.00 35.63 2.32
241 242 6.636454 ATCCACTCTAGGGTGTTTCAAATA 57.364 37.500 21.26 0.00 35.63 1.40
242 243 5.801380 TCCACTCTAGGGTGTTTCAAATAC 58.199 41.667 21.26 0.00 35.63 1.89
243 244 4.941873 CCACTCTAGGGTGTTTCAAATACC 59.058 45.833 21.26 7.53 41.50 2.73
244 245 5.514136 CCACTCTAGGGTGTTTCAAATACCA 60.514 44.000 21.26 0.00 43.76 3.25
245 246 6.001460 CACTCTAGGGTGTTTCAAATACCAA 58.999 40.000 17.12 4.58 43.76 3.67
246 247 6.488683 CACTCTAGGGTGTTTCAAATACCAAA 59.511 38.462 17.12 4.25 43.76 3.28
247 248 7.013846 CACTCTAGGGTGTTTCAAATACCAAAA 59.986 37.037 17.12 1.96 43.76 2.44
248 249 7.013942 ACTCTAGGGTGTTTCAAATACCAAAAC 59.986 37.037 17.12 0.71 43.76 2.43
249 250 5.941555 AGGGTGTTTCAAATACCAAAACA 57.058 34.783 17.12 0.00 43.76 2.83
256 257 8.553459 TGTTTCAAATACCAAAACACAACATT 57.447 26.923 0.00 0.00 37.82 2.71
257 258 9.003658 TGTTTCAAATACCAAAACACAACATTT 57.996 25.926 0.00 0.00 37.82 2.32
258 259 9.833182 GTTTCAAATACCAAAACACAACATTTT 57.167 25.926 0.00 0.00 33.97 1.82
319 320 8.483307 CAATTAAATTGCTACAAGGCTTGATT 57.517 30.769 32.50 18.01 32.92 2.57
320 321 8.938906 CAATTAAATTGCTACAAGGCTTGATTT 58.061 29.630 32.50 25.37 32.92 2.17
321 322 7.887996 TTAAATTGCTACAAGGCTTGATTTG 57.112 32.000 32.50 18.45 0.00 2.32
322 323 3.940209 TTGCTACAAGGCTTGATTTGG 57.060 42.857 32.50 14.06 0.00 3.28
323 324 3.153369 TGCTACAAGGCTTGATTTGGA 57.847 42.857 32.50 16.54 0.00 3.53
324 325 3.495331 TGCTACAAGGCTTGATTTGGAA 58.505 40.909 32.50 5.24 0.00 3.53
325 326 3.894427 TGCTACAAGGCTTGATTTGGAAA 59.106 39.130 32.50 7.53 0.00 3.13
326 327 4.527816 TGCTACAAGGCTTGATTTGGAAAT 59.472 37.500 32.50 10.12 0.00 2.17
327 328 4.866486 GCTACAAGGCTTGATTTGGAAATG 59.134 41.667 32.50 3.42 0.00 2.32
328 329 4.276058 ACAAGGCTTGATTTGGAAATGG 57.724 40.909 32.50 2.48 0.00 3.16
329 330 3.903090 ACAAGGCTTGATTTGGAAATGGA 59.097 39.130 32.50 0.00 0.00 3.41
330 331 4.533311 ACAAGGCTTGATTTGGAAATGGAT 59.467 37.500 32.50 2.77 0.00 3.41
331 332 5.013391 ACAAGGCTTGATTTGGAAATGGATT 59.987 36.000 32.50 2.08 0.00 3.01
332 333 5.767277 AGGCTTGATTTGGAAATGGATTT 57.233 34.783 0.00 0.00 0.00 2.17
333 334 6.872585 AGGCTTGATTTGGAAATGGATTTA 57.127 33.333 0.00 0.00 0.00 1.40
334 335 7.256494 AGGCTTGATTTGGAAATGGATTTAA 57.744 32.000 0.00 0.00 0.00 1.52
335 336 7.688343 AGGCTTGATTTGGAAATGGATTTAAA 58.312 30.769 0.00 0.00 0.00 1.52
336 337 8.162746 AGGCTTGATTTGGAAATGGATTTAAAA 58.837 29.630 0.00 0.00 0.00 1.52
337 338 8.791675 GGCTTGATTTGGAAATGGATTTAAAAA 58.208 29.630 0.00 0.00 0.00 1.94
384 385 9.723601 ATATTTATTTTGTGGTGCATTTTGTCT 57.276 25.926 0.00 0.00 0.00 3.41
385 386 7.856145 TTTATTTTGTGGTGCATTTTGTCTT 57.144 28.000 0.00 0.00 0.00 3.01
386 387 5.989551 ATTTTGTGGTGCATTTTGTCTTC 57.010 34.783 0.00 0.00 0.00 2.87
387 388 2.772568 TGTGGTGCATTTTGTCTTCG 57.227 45.000 0.00 0.00 0.00 3.79
388 389 2.020720 TGTGGTGCATTTTGTCTTCGT 58.979 42.857 0.00 0.00 0.00 3.85
389 390 2.223456 TGTGGTGCATTTTGTCTTCGTG 60.223 45.455 0.00 0.00 0.00 4.35
390 391 1.336440 TGGTGCATTTTGTCTTCGTGG 59.664 47.619 0.00 0.00 0.00 4.94
391 392 1.336755 GGTGCATTTTGTCTTCGTGGT 59.663 47.619 0.00 0.00 0.00 4.16
392 393 2.223711 GGTGCATTTTGTCTTCGTGGTT 60.224 45.455 0.00 0.00 0.00 3.67
393 394 3.003897 GGTGCATTTTGTCTTCGTGGTTA 59.996 43.478 0.00 0.00 0.00 2.85
394 395 3.972502 GTGCATTTTGTCTTCGTGGTTAC 59.027 43.478 0.00 0.00 0.00 2.50
395 396 3.628032 TGCATTTTGTCTTCGTGGTTACA 59.372 39.130 0.00 0.00 0.00 2.41
396 397 3.972502 GCATTTTGTCTTCGTGGTTACAC 59.027 43.478 0.00 0.00 44.23 2.90
397 398 4.261031 GCATTTTGTCTTCGTGGTTACACT 60.261 41.667 0.00 0.00 45.50 3.55
398 399 4.868450 TTTTGTCTTCGTGGTTACACTG 57.132 40.909 0.00 0.00 45.50 3.66
399 400 2.519377 TGTCTTCGTGGTTACACTGG 57.481 50.000 0.00 0.00 45.50 4.00
400 401 1.758280 TGTCTTCGTGGTTACACTGGT 59.242 47.619 0.00 0.00 45.50 4.00
401 402 2.132762 GTCTTCGTGGTTACACTGGTG 58.867 52.381 0.00 0.00 45.50 4.17
424 425 8.033038 GGTGACTTTTATTGGATTTTAAGTCCC 58.967 37.037 4.05 0.00 40.25 4.46
426 427 9.148879 TGACTTTTATTGGATTTTAAGTCCCAA 57.851 29.630 4.05 0.00 40.25 4.12
427 428 9.419297 GACTTTTATTGGATTTTAAGTCCCAAC 57.581 33.333 4.05 0.00 40.95 3.77
428 429 8.929487 ACTTTTATTGGATTTTAAGTCCCAACA 58.071 29.630 4.05 0.00 40.95 3.33
429 430 9.423061 CTTTTATTGGATTTTAAGTCCCAACAG 57.577 33.333 4.05 0.00 40.95 3.16
430 431 8.713708 TTTATTGGATTTTAAGTCCCAACAGA 57.286 30.769 4.05 0.00 40.95 3.41
432 433 7.797121 ATTGGATTTTAAGTCCCAACAGATT 57.203 32.000 4.05 0.00 40.95 2.40
434 435 8.713708 TTGGATTTTAAGTCCCAACAGATTAA 57.286 30.769 4.05 0.00 34.10 1.40
435 436 8.117813 TGGATTTTAAGTCCCAACAGATTAAC 57.882 34.615 4.05 0.00 34.76 2.01
436 437 7.094549 TGGATTTTAAGTCCCAACAGATTAACG 60.095 37.037 4.05 0.00 34.76 3.18
468 479 6.667414 TGTTAGGGCAACAAGATCCAAATAAT 59.333 34.615 0.00 0.00 44.20 1.28
519 530 5.934043 GCTTTTCAGCACTCCCAAATTTTAT 59.066 36.000 0.00 0.00 46.49 1.40
556 571 6.886459 AGTGATAGTCAGGCACAAAAATACAT 59.114 34.615 0.00 0.00 35.08 2.29
560 575 9.542462 GATAGTCAGGCACAAAAATACATAGTA 57.458 33.333 0.00 0.00 0.00 1.82
561 576 7.611213 AGTCAGGCACAAAAATACATAGTAC 57.389 36.000 0.00 0.00 0.00 2.73
595 610 6.184789 ACCTCTTTAAAAATAATCTCGCCCA 58.815 36.000 0.00 0.00 0.00 5.36
601 616 7.639113 TTAAAAATAATCTCGCCCAGACATT 57.361 32.000 0.00 0.00 32.26 2.71
608 623 0.968901 TCGCCCAGACATTCCTACGT 60.969 55.000 0.00 0.00 0.00 3.57
621 636 7.929785 AGACATTCCTACGTTGAGTTTAAAGAA 59.070 33.333 0.00 0.00 0.00 2.52
630 645 6.183360 ACGTTGAGTTTAAAGAAAAGGGGAAG 60.183 38.462 0.00 0.00 0.00 3.46
666 681 2.816012 TCGTGTTTCGAGGTGGCA 59.184 55.556 0.00 0.00 44.01 4.92
667 682 1.369692 TCGTGTTTCGAGGTGGCAT 59.630 52.632 0.00 0.00 44.01 4.40
672 687 3.049912 GTGTTTCGAGGTGGCATTTTTC 58.950 45.455 0.00 0.00 0.00 2.29
705 721 3.193267 TGCTCCAATGAACCTTAATGCAC 59.807 43.478 0.00 0.00 0.00 4.57
714 730 6.441093 TGAACCTTAATGCACTTGATGATC 57.559 37.500 0.00 0.00 0.00 2.92
721 737 1.134699 TGCACTTGATGATCTCGGTCC 60.135 52.381 0.00 0.00 0.00 4.46
724 740 3.551863 GCACTTGATGATCTCGGTCCTAG 60.552 52.174 0.00 0.00 0.00 3.02
730 746 2.388735 TGATCTCGGTCCTAGTGCAAT 58.611 47.619 0.00 0.00 0.00 3.56
736 752 2.002586 CGGTCCTAGTGCAATGTTCTG 58.997 52.381 0.00 0.00 0.00 3.02
743 759 1.532868 AGTGCAATGTTCTGCTTCGTC 59.467 47.619 0.00 0.00 43.07 4.20
753 769 1.156736 CTGCTTCGTCCAAAACCGAT 58.843 50.000 0.00 0.00 32.44 4.18
763 779 2.029470 TCCAAAACCGATGTTTCATGGC 60.029 45.455 0.00 0.00 43.80 4.40
775 791 5.063180 TGTTTCATGGCAATTCAGATCAC 57.937 39.130 0.00 0.00 0.00 3.06
776 792 4.523558 TGTTTCATGGCAATTCAGATCACA 59.476 37.500 0.00 0.00 0.00 3.58
777 793 5.010820 TGTTTCATGGCAATTCAGATCACAA 59.989 36.000 0.00 0.00 0.00 3.33
778 794 4.976224 TCATGGCAATTCAGATCACAAG 57.024 40.909 0.00 0.00 0.00 3.16
780 796 3.159213 TGGCAATTCAGATCACAAGGT 57.841 42.857 0.00 0.00 0.00 3.50
781 797 3.084039 TGGCAATTCAGATCACAAGGTC 58.916 45.455 0.00 0.00 0.00 3.85
782 798 2.096496 GGCAATTCAGATCACAAGGTCG 59.904 50.000 0.00 0.00 0.00 4.79
783 799 3.002791 GCAATTCAGATCACAAGGTCGA 58.997 45.455 0.00 0.00 0.00 4.20
785 801 4.811024 GCAATTCAGATCACAAGGTCGATA 59.189 41.667 0.00 0.00 0.00 2.92
834 861 0.836606 TGGGCTTGTGTGAGAGTTGA 59.163 50.000 0.00 0.00 0.00 3.18
851 878 2.420628 TGAAGGAATTTGCGCAACAG 57.579 45.000 24.99 0.00 0.00 3.16
859 886 0.743688 TTTGCGCAACAGGAACACAT 59.256 45.000 24.99 0.00 0.00 3.21
872 899 4.024556 CAGGAACACATGACAACTCTGAAC 60.025 45.833 0.00 0.00 0.00 3.18
882 909 5.806286 TGACAACTCTGAACGTTTTGAATC 58.194 37.500 14.76 5.38 0.00 2.52
930 959 1.001597 GTAATCGGACGGCTCCTGTAG 60.002 57.143 0.00 0.00 33.79 2.74
1184 1221 4.504916 CCTCCGCCAGTCGCTCAG 62.505 72.222 0.00 0.00 36.73 3.35
1304 1341 1.306568 GCCTCCTCCTCCTCCAGTT 60.307 63.158 0.00 0.00 0.00 3.16
1650 1687 2.898738 CTCTGGGCTGAGATGCGT 59.101 61.111 2.71 0.00 36.23 5.24
1692 1729 2.100989 GTGGTCTCATACGGGACTCTT 58.899 52.381 0.00 0.00 33.46 2.85
1753 1790 1.207329 TGTCTCTCCTCGACGAGATGA 59.793 52.381 26.11 19.72 38.22 2.92
2010 2047 6.415573 CGGCAAAAACGTACAATTACTTCTTT 59.584 34.615 0.00 0.00 0.00 2.52
2027 2064 3.275143 TCTTTGTGTTCTTCGCCAAGAA 58.725 40.909 2.03 2.03 44.87 2.52
2154 2191 5.054477 GCTAATCGGCTTGAATTAGTGGTA 58.946 41.667 0.00 0.00 0.00 3.25
2237 2274 4.484236 CTGATACATTTGCTTTGCCGAAA 58.516 39.130 0.00 0.00 0.00 3.46
2256 2293 1.156736 ACCATCGGTTTGAAGAAGCG 58.843 50.000 4.20 4.20 41.87 4.68
2274 2311 1.470098 GCGTGTGCTGAATTTGAGGAT 59.530 47.619 0.00 0.00 38.39 3.24
2284 2321 6.183360 TGCTGAATTTGAGGATATGTTTCGTC 60.183 38.462 0.00 0.00 0.00 4.20
2376 2413 2.900546 ACTGGAAGAGAAGTTGACCGAT 59.099 45.455 0.00 0.00 37.43 4.18
2607 2644 9.120538 GCCAACATTAGAAAAAGAGTATATGGA 57.879 33.333 0.00 0.00 0.00 3.41
2856 2893 0.179145 GAAGCAGTGGACATGCATGC 60.179 55.000 26.53 18.01 46.31 4.06
2887 2924 2.357009 GTGCTTAAGATGTGGCATGGAG 59.643 50.000 6.67 0.00 37.05 3.86
2919 2956 8.232098 AGCCTTCCCCATATATGTAAGTAATT 57.768 34.615 11.73 0.00 0.00 1.40
2945 2982 3.628942 GCATCATTCTGTTGTGCTCCATA 59.371 43.478 0.00 0.00 33.25 2.74
3327 3365 4.524328 GGGAATTTCAGGATTGTGTTGAGT 59.476 41.667 0.00 0.00 0.00 3.41
3356 3395 9.457436 TTTTTCCTAAGGATTCCATTGTACTAC 57.543 33.333 5.29 0.00 0.00 2.73
3407 3447 7.448161 TCAGTTGAATCAAGCCTCTTGAAAATA 59.552 33.333 12.53 0.00 31.55 1.40
3476 3516 7.679638 GCAAATTCAATCTTATAGGCTTCACGT 60.680 37.037 0.00 0.00 0.00 4.49
3563 3603 2.092914 AGGCCCTAAATGCTGTAGTGAC 60.093 50.000 0.00 0.00 0.00 3.67
3632 3674 1.069775 ATAGGGTCGGTTTTGGGTGT 58.930 50.000 0.00 0.00 0.00 4.16
3637 3679 2.081462 GGTCGGTTTTGGGTGTATCAG 58.919 52.381 0.00 0.00 0.00 2.90
3638 3680 2.081462 GTCGGTTTTGGGTGTATCAGG 58.919 52.381 0.00 0.00 0.00 3.86
3639 3681 1.003812 TCGGTTTTGGGTGTATCAGGG 59.996 52.381 0.00 0.00 0.00 4.45
3640 3682 1.182667 GGTTTTGGGTGTATCAGGGC 58.817 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.367911 TCCTACTGTACTTGATAATATGGCTTG 58.632 37.037 0.00 0.00 0.00 4.01
1 2 8.492415 TCCTACTGTACTTGATAATATGGCTT 57.508 34.615 0.00 0.00 0.00 4.35
2 3 8.492415 TTCCTACTGTACTTGATAATATGGCT 57.508 34.615 0.00 0.00 0.00 4.75
3 4 9.726438 ATTTCCTACTGTACTTGATAATATGGC 57.274 33.333 0.00 0.00 0.00 4.40
12 13 9.706691 CTTCTTGTTATTTCCTACTGTACTTGA 57.293 33.333 0.00 0.00 0.00 3.02
13 14 9.706691 TCTTCTTGTTATTTCCTACTGTACTTG 57.293 33.333 0.00 0.00 0.00 3.16
15 16 9.877178 CATCTTCTTGTTATTTCCTACTGTACT 57.123 33.333 0.00 0.00 0.00 2.73
16 17 9.654663 ACATCTTCTTGTTATTTCCTACTGTAC 57.345 33.333 0.00 0.00 0.00 2.90
18 19 9.574516 AAACATCTTCTTGTTATTTCCTACTGT 57.425 29.630 0.00 0.00 38.85 3.55
21 22 9.626045 CCAAAACATCTTCTTGTTATTTCCTAC 57.374 33.333 0.00 0.00 38.85 3.18
22 23 8.303876 GCCAAAACATCTTCTTGTTATTTCCTA 58.696 33.333 0.00 0.00 38.85 2.94
23 24 7.154656 GCCAAAACATCTTCTTGTTATTTCCT 58.845 34.615 0.00 0.00 38.85 3.36
24 25 6.368791 GGCCAAAACATCTTCTTGTTATTTCC 59.631 38.462 0.00 0.00 38.85 3.13
25 26 6.368791 GGGCCAAAACATCTTCTTGTTATTTC 59.631 38.462 4.39 0.00 38.85 2.17
26 27 6.183361 TGGGCCAAAACATCTTCTTGTTATTT 60.183 34.615 2.13 0.00 38.85 1.40
27 28 5.306678 TGGGCCAAAACATCTTCTTGTTATT 59.693 36.000 2.13 0.00 38.85 1.40
28 29 4.837860 TGGGCCAAAACATCTTCTTGTTAT 59.162 37.500 2.13 0.00 38.85 1.89
29 30 4.219115 TGGGCCAAAACATCTTCTTGTTA 58.781 39.130 2.13 0.00 38.85 2.41
30 31 3.037549 TGGGCCAAAACATCTTCTTGTT 58.962 40.909 2.13 0.00 41.49 2.83
31 32 2.676748 TGGGCCAAAACATCTTCTTGT 58.323 42.857 2.13 0.00 0.00 3.16
32 33 3.070015 ACTTGGGCCAAAACATCTTCTTG 59.930 43.478 21.28 6.31 0.00 3.02
33 34 3.308401 ACTTGGGCCAAAACATCTTCTT 58.692 40.909 21.28 0.00 0.00 2.52
34 35 2.893489 GACTTGGGCCAAAACATCTTCT 59.107 45.455 21.28 0.00 0.00 2.85
35 36 2.627699 TGACTTGGGCCAAAACATCTTC 59.372 45.455 21.28 8.34 0.00 2.87
36 37 2.676748 TGACTTGGGCCAAAACATCTT 58.323 42.857 21.28 0.00 0.00 2.40
37 38 2.380064 TGACTTGGGCCAAAACATCT 57.620 45.000 21.28 0.00 0.00 2.90
38 39 5.343307 AATATGACTTGGGCCAAAACATC 57.657 39.130 28.59 20.24 0.00 3.06
39 40 6.610830 TGATAATATGACTTGGGCCAAAACAT 59.389 34.615 28.11 28.11 0.00 2.71
40 41 5.954752 TGATAATATGACTTGGGCCAAAACA 59.045 36.000 21.28 21.36 0.00 2.83
41 42 6.463995 TGATAATATGACTTGGGCCAAAAC 57.536 37.500 21.28 16.58 0.00 2.43
42 43 6.667414 ACTTGATAATATGACTTGGGCCAAAA 59.333 34.615 21.28 9.38 0.00 2.44
43 44 6.194235 ACTTGATAATATGACTTGGGCCAAA 58.806 36.000 21.28 5.94 0.00 3.28
44 45 5.765510 ACTTGATAATATGACTTGGGCCAA 58.234 37.500 19.68 19.68 0.00 4.52
45 46 5.387113 ACTTGATAATATGACTTGGGCCA 57.613 39.130 0.00 0.00 0.00 5.36
46 47 6.296026 TGTACTTGATAATATGACTTGGGCC 58.704 40.000 0.00 0.00 0.00 5.80
47 48 6.992715 ACTGTACTTGATAATATGACTTGGGC 59.007 38.462 0.00 0.00 0.00 5.36
48 49 9.698309 CTACTGTACTTGATAATATGACTTGGG 57.302 37.037 0.00 0.00 0.00 4.12
49 50 9.698309 CCTACTGTACTTGATAATATGACTTGG 57.302 37.037 0.00 0.00 0.00 3.61
61 62 9.268282 TCTTCCTTATTTCCTACTGTACTTGAT 57.732 33.333 0.00 0.00 0.00 2.57
62 63 8.660295 TCTTCCTTATTTCCTACTGTACTTGA 57.340 34.615 0.00 0.00 0.00 3.02
63 64 8.750298 TCTCTTCCTTATTTCCTACTGTACTTG 58.250 37.037 0.00 0.00 0.00 3.16
64 65 8.896722 TCTCTTCCTTATTTCCTACTGTACTT 57.103 34.615 0.00 0.00 0.00 2.24
65 66 7.562088 CCTCTCTTCCTTATTTCCTACTGTACT 59.438 40.741 0.00 0.00 0.00 2.73
66 67 7.684913 GCCTCTCTTCCTTATTTCCTACTGTAC 60.685 44.444 0.00 0.00 0.00 2.90
67 68 6.324254 GCCTCTCTTCCTTATTTCCTACTGTA 59.676 42.308 0.00 0.00 0.00 2.74
68 69 5.129650 GCCTCTCTTCCTTATTTCCTACTGT 59.870 44.000 0.00 0.00 0.00 3.55
69 70 5.129485 TGCCTCTCTTCCTTATTTCCTACTG 59.871 44.000 0.00 0.00 0.00 2.74
70 71 5.281314 TGCCTCTCTTCCTTATTTCCTACT 58.719 41.667 0.00 0.00 0.00 2.57
71 72 5.615925 TGCCTCTCTTCCTTATTTCCTAC 57.384 43.478 0.00 0.00 0.00 3.18
72 73 5.308237 GGATGCCTCTCTTCCTTATTTCCTA 59.692 44.000 0.00 0.00 36.40 2.94
73 74 4.103943 GGATGCCTCTCTTCCTTATTTCCT 59.896 45.833 0.00 0.00 36.40 3.36
74 75 4.141390 TGGATGCCTCTCTTCCTTATTTCC 60.141 45.833 0.00 0.00 39.19 3.13
75 76 5.041191 TGGATGCCTCTCTTCCTTATTTC 57.959 43.478 0.00 0.00 39.19 2.17
76 77 5.133322 TCATGGATGCCTCTCTTCCTTATTT 59.867 40.000 0.00 0.00 39.19 1.40
77 78 4.662179 TCATGGATGCCTCTCTTCCTTATT 59.338 41.667 0.00 0.00 39.19 1.40
78 79 4.237843 TCATGGATGCCTCTCTTCCTTAT 58.762 43.478 0.00 0.00 39.19 1.73
79 80 3.645212 CTCATGGATGCCTCTCTTCCTTA 59.355 47.826 0.00 0.00 39.19 2.69
80 81 2.438763 CTCATGGATGCCTCTCTTCCTT 59.561 50.000 0.00 0.00 39.19 3.36
81 82 2.048601 CTCATGGATGCCTCTCTTCCT 58.951 52.381 0.00 0.00 39.19 3.36
82 83 2.045524 TCTCATGGATGCCTCTCTTCC 58.954 52.381 0.00 0.00 38.97 3.46
83 84 2.699846 AGTCTCATGGATGCCTCTCTTC 59.300 50.000 0.00 0.00 0.00 2.87
84 85 2.699846 GAGTCTCATGGATGCCTCTCTT 59.300 50.000 0.00 0.00 0.00 2.85
85 86 2.318908 GAGTCTCATGGATGCCTCTCT 58.681 52.381 0.00 0.00 0.00 3.10
86 87 2.037901 TGAGTCTCATGGATGCCTCTC 58.962 52.381 0.00 0.00 0.00 3.20
87 88 1.761784 GTGAGTCTCATGGATGCCTCT 59.238 52.381 5.68 0.00 0.00 3.69
88 89 1.483827 TGTGAGTCTCATGGATGCCTC 59.516 52.381 5.68 0.00 0.00 4.70
89 90 1.576577 TGTGAGTCTCATGGATGCCT 58.423 50.000 5.68 0.00 0.00 4.75
90 91 2.617308 CAATGTGAGTCTCATGGATGCC 59.383 50.000 5.68 0.00 0.00 4.40
91 92 2.617308 CCAATGTGAGTCTCATGGATGC 59.383 50.000 13.67 0.00 0.00 3.91
92 93 4.146745 TCCAATGTGAGTCTCATGGATG 57.853 45.455 16.52 9.27 0.00 3.51
93 94 4.849813 TTCCAATGTGAGTCTCATGGAT 57.150 40.909 19.74 5.59 0.00 3.41
94 95 4.639078 TTTCCAATGTGAGTCTCATGGA 57.361 40.909 16.52 16.52 0.00 3.41
95 96 5.651139 AGAATTTCCAATGTGAGTCTCATGG 59.349 40.000 12.95 12.95 0.00 3.66
96 97 6.373495 TGAGAATTTCCAATGTGAGTCTCATG 59.627 38.462 5.68 0.24 0.00 3.07
97 98 6.479006 TGAGAATTTCCAATGTGAGTCTCAT 58.521 36.000 5.68 1.79 0.00 2.90
98 99 5.868454 TGAGAATTTCCAATGTGAGTCTCA 58.132 37.500 0.00 0.00 0.00 3.27
99 100 6.808008 TTGAGAATTTCCAATGTGAGTCTC 57.192 37.500 0.00 0.00 0.00 3.36
100 101 7.000472 TCTTTGAGAATTTCCAATGTGAGTCT 59.000 34.615 0.00 0.00 0.00 3.24
101 102 7.206981 TCTTTGAGAATTTCCAATGTGAGTC 57.793 36.000 0.00 0.00 0.00 3.36
102 103 7.587037 TTCTTTGAGAATTTCCAATGTGAGT 57.413 32.000 0.00 0.00 0.00 3.41
103 104 9.565213 GTATTCTTTGAGAATTTCCAATGTGAG 57.435 33.333 8.33 0.00 41.90 3.51
104 105 9.300681 AGTATTCTTTGAGAATTTCCAATGTGA 57.699 29.630 8.33 0.00 41.90 3.58
105 106 9.918630 AAGTATTCTTTGAGAATTTCCAATGTG 57.081 29.630 8.33 0.00 41.90 3.21
106 107 9.918630 CAAGTATTCTTTGAGAATTTCCAATGT 57.081 29.630 8.33 0.00 41.90 2.71
107 108 8.866956 GCAAGTATTCTTTGAGAATTTCCAATG 58.133 33.333 8.33 1.22 41.90 2.82
108 109 8.810041 AGCAAGTATTCTTTGAGAATTTCCAAT 58.190 29.630 8.33 0.00 41.90 3.16
109 110 8.181904 AGCAAGTATTCTTTGAGAATTTCCAA 57.818 30.769 8.33 0.00 41.90 3.53
110 111 7.765695 AGCAAGTATTCTTTGAGAATTTCCA 57.234 32.000 8.33 0.00 41.90 3.53
111 112 8.299570 TCAAGCAAGTATTCTTTGAGAATTTCC 58.700 33.333 8.33 0.00 41.90 3.13
112 113 9.122613 GTCAAGCAAGTATTCTTTGAGAATTTC 57.877 33.333 8.33 3.82 41.90 2.17
113 114 8.084684 GGTCAAGCAAGTATTCTTTGAGAATTT 58.915 33.333 8.33 0.00 41.90 1.82
114 115 7.449704 AGGTCAAGCAAGTATTCTTTGAGAATT 59.550 33.333 8.33 0.00 41.90 2.17
115 116 6.944862 AGGTCAAGCAAGTATTCTTTGAGAAT 59.055 34.615 8.13 8.13 46.01 2.40
116 117 6.299141 AGGTCAAGCAAGTATTCTTTGAGAA 58.701 36.000 0.00 0.00 38.78 2.87
117 118 5.869579 AGGTCAAGCAAGTATTCTTTGAGA 58.130 37.500 0.00 0.00 30.87 3.27
118 119 7.550551 TGATAGGTCAAGCAAGTATTCTTTGAG 59.449 37.037 0.00 0.00 30.87 3.02
119 120 7.394016 TGATAGGTCAAGCAAGTATTCTTTGA 58.606 34.615 0.00 0.00 0.00 2.69
120 121 7.615582 TGATAGGTCAAGCAAGTATTCTTTG 57.384 36.000 0.00 0.00 0.00 2.77
134 135 8.344831 CGAATTCATATTTGCTTGATAGGTCAA 58.655 33.333 6.22 0.00 41.89 3.18
135 136 7.498900 ACGAATTCATATTTGCTTGATAGGTCA 59.501 33.333 6.22 0.00 0.00 4.02
136 137 7.800380 CACGAATTCATATTTGCTTGATAGGTC 59.200 37.037 6.22 0.00 0.00 3.85
137 138 7.642669 CACGAATTCATATTTGCTTGATAGGT 58.357 34.615 6.22 0.00 0.00 3.08
138 139 6.580041 GCACGAATTCATATTTGCTTGATAGG 59.420 38.462 6.22 0.00 29.05 2.57
139 140 6.580041 GGCACGAATTCATATTTGCTTGATAG 59.420 38.462 6.22 0.00 31.26 2.08
140 141 6.039159 TGGCACGAATTCATATTTGCTTGATA 59.961 34.615 6.22 0.00 31.26 2.15
141 142 5.163530 TGGCACGAATTCATATTTGCTTGAT 60.164 36.000 6.22 0.00 31.26 2.57
142 143 4.157472 TGGCACGAATTCATATTTGCTTGA 59.843 37.500 6.22 0.00 31.26 3.02
143 144 4.422840 TGGCACGAATTCATATTTGCTTG 58.577 39.130 6.22 0.00 31.26 4.01
144 145 4.717233 TGGCACGAATTCATATTTGCTT 57.283 36.364 6.22 0.00 31.26 3.91
145 146 4.082300 TGTTGGCACGAATTCATATTTGCT 60.082 37.500 6.22 0.00 31.26 3.91
146 147 4.031652 GTGTTGGCACGAATTCATATTTGC 59.968 41.667 6.22 5.50 35.75 3.68
147 148 5.685195 GTGTTGGCACGAATTCATATTTG 57.315 39.130 6.22 0.00 35.75 2.32
160 161 8.395633 AGTAAATTTCGATTATAGTGTTGGCAC 58.604 33.333 0.00 0.00 45.57 5.01
161 162 8.500753 AGTAAATTTCGATTATAGTGTTGGCA 57.499 30.769 0.00 0.00 0.00 4.92
162 163 9.783256 AAAGTAAATTTCGATTATAGTGTTGGC 57.217 29.630 0.00 0.00 0.00 4.52
185 186 9.346725 GCTTGGTCATATTAAAACTTCTGAAAG 57.653 33.333 0.00 0.00 38.54 2.62
186 187 8.855110 TGCTTGGTCATATTAAAACTTCTGAAA 58.145 29.630 0.00 0.00 0.00 2.69
187 188 8.402798 TGCTTGGTCATATTAAAACTTCTGAA 57.597 30.769 0.00 0.00 0.00 3.02
188 189 7.994425 TGCTTGGTCATATTAAAACTTCTGA 57.006 32.000 0.00 0.00 0.00 3.27
189 190 8.299570 ACTTGCTTGGTCATATTAAAACTTCTG 58.700 33.333 0.00 0.00 0.00 3.02
190 191 8.409358 ACTTGCTTGGTCATATTAAAACTTCT 57.591 30.769 0.00 0.00 0.00 2.85
191 192 9.476202 AAACTTGCTTGGTCATATTAAAACTTC 57.524 29.630 0.00 0.00 0.00 3.01
196 197 9.249053 TGGATAAACTTGCTTGGTCATATTAAA 57.751 29.630 0.00 0.00 0.00 1.52
197 198 8.682710 GTGGATAAACTTGCTTGGTCATATTAA 58.317 33.333 0.00 0.00 0.00 1.40
198 199 8.052748 AGTGGATAAACTTGCTTGGTCATATTA 58.947 33.333 0.00 0.00 0.00 0.98
199 200 6.891908 AGTGGATAAACTTGCTTGGTCATATT 59.108 34.615 0.00 0.00 0.00 1.28
200 201 6.426587 AGTGGATAAACTTGCTTGGTCATAT 58.573 36.000 0.00 0.00 0.00 1.78
201 202 5.815581 AGTGGATAAACTTGCTTGGTCATA 58.184 37.500 0.00 0.00 0.00 2.15
202 203 4.666512 AGTGGATAAACTTGCTTGGTCAT 58.333 39.130 0.00 0.00 0.00 3.06
203 204 4.072131 GAGTGGATAAACTTGCTTGGTCA 58.928 43.478 0.00 0.00 0.00 4.02
204 205 4.327680 AGAGTGGATAAACTTGCTTGGTC 58.672 43.478 0.00 0.00 0.00 4.02
205 206 4.373156 AGAGTGGATAAACTTGCTTGGT 57.627 40.909 0.00 0.00 0.00 3.67
206 207 4.878397 CCTAGAGTGGATAAACTTGCTTGG 59.122 45.833 0.00 0.00 0.00 3.61
207 208 4.878397 CCCTAGAGTGGATAAACTTGCTTG 59.122 45.833 0.00 0.00 0.00 4.01
208 209 4.536489 ACCCTAGAGTGGATAAACTTGCTT 59.464 41.667 0.00 0.00 0.00 3.91
209 210 4.080863 CACCCTAGAGTGGATAAACTTGCT 60.081 45.833 0.00 0.00 33.95 3.91
210 211 4.192317 CACCCTAGAGTGGATAAACTTGC 58.808 47.826 0.00 0.00 33.95 4.01
211 212 5.422214 ACACCCTAGAGTGGATAAACTTG 57.578 43.478 9.40 0.00 42.28 3.16
212 213 6.043938 TGAAACACCCTAGAGTGGATAAACTT 59.956 38.462 9.40 0.00 42.28 2.66
213 214 5.546499 TGAAACACCCTAGAGTGGATAAACT 59.454 40.000 9.40 0.00 42.28 2.66
214 215 5.801380 TGAAACACCCTAGAGTGGATAAAC 58.199 41.667 9.40 0.00 42.28 2.01
215 216 6.442541 TTGAAACACCCTAGAGTGGATAAA 57.557 37.500 9.40 0.00 42.28 1.40
216 217 6.442541 TTTGAAACACCCTAGAGTGGATAA 57.557 37.500 9.40 0.00 42.28 1.75
217 218 6.636454 ATTTGAAACACCCTAGAGTGGATA 57.364 37.500 9.40 0.00 42.28 2.59
218 219 4.993705 TTTGAAACACCCTAGAGTGGAT 57.006 40.909 9.40 0.00 42.28 3.41
219 220 4.993705 ATTTGAAACACCCTAGAGTGGA 57.006 40.909 9.40 0.00 42.28 4.02
220 221 4.941873 GGTATTTGAAACACCCTAGAGTGG 59.058 45.833 9.40 0.00 42.28 4.00
221 222 5.556915 TGGTATTTGAAACACCCTAGAGTG 58.443 41.667 2.51 2.34 43.65 3.51
222 223 5.836024 TGGTATTTGAAACACCCTAGAGT 57.164 39.130 2.51 0.00 0.00 3.24
223 224 7.013846 TGTTTTGGTATTTGAAACACCCTAGAG 59.986 37.037 2.51 0.00 38.09 2.43
224 225 6.834451 TGTTTTGGTATTTGAAACACCCTAGA 59.166 34.615 2.51 0.00 38.09 2.43
225 226 7.045126 TGTTTTGGTATTTGAAACACCCTAG 57.955 36.000 2.51 0.00 38.09 3.02
227 228 5.941555 TGTTTTGGTATTTGAAACACCCT 57.058 34.783 2.51 0.00 38.09 4.34
231 232 8.553459 AATGTTGTGTTTTGGTATTTGAAACA 57.447 26.923 0.00 0.00 39.99 2.83
232 233 9.833182 AAAATGTTGTGTTTTGGTATTTGAAAC 57.167 25.926 0.00 0.00 34.67 2.78
294 295 8.483307 AATCAAGCCTTGTAGCAATTTAATTG 57.517 30.769 12.84 12.84 43.06 2.32
295 296 8.938906 CAAATCAAGCCTTGTAGCAATTTAATT 58.061 29.630 4.04 0.00 34.23 1.40
296 297 7.550196 CCAAATCAAGCCTTGTAGCAATTTAAT 59.450 33.333 4.04 0.00 34.23 1.40
297 298 6.873076 CCAAATCAAGCCTTGTAGCAATTTAA 59.127 34.615 4.04 0.00 34.23 1.52
298 299 6.210385 TCCAAATCAAGCCTTGTAGCAATTTA 59.790 34.615 4.04 0.00 34.23 1.40
299 300 5.011943 TCCAAATCAAGCCTTGTAGCAATTT 59.988 36.000 4.04 0.14 34.23 1.82
300 301 4.527816 TCCAAATCAAGCCTTGTAGCAATT 59.472 37.500 4.04 0.00 34.23 2.32
301 302 4.088634 TCCAAATCAAGCCTTGTAGCAAT 58.911 39.130 4.04 0.00 34.23 3.56
302 303 3.495331 TCCAAATCAAGCCTTGTAGCAA 58.505 40.909 4.04 0.00 34.23 3.91
303 304 3.153369 TCCAAATCAAGCCTTGTAGCA 57.847 42.857 4.04 0.00 34.23 3.49
304 305 4.519540 TTTCCAAATCAAGCCTTGTAGC 57.480 40.909 4.04 0.00 0.00 3.58
305 306 5.185635 TCCATTTCCAAATCAAGCCTTGTAG 59.814 40.000 4.04 0.00 0.00 2.74
306 307 5.083122 TCCATTTCCAAATCAAGCCTTGTA 58.917 37.500 4.04 0.00 0.00 2.41
307 308 3.903090 TCCATTTCCAAATCAAGCCTTGT 59.097 39.130 4.04 0.00 0.00 3.16
308 309 4.540359 TCCATTTCCAAATCAAGCCTTG 57.460 40.909 0.00 0.00 0.00 3.61
309 310 5.767277 AATCCATTTCCAAATCAAGCCTT 57.233 34.783 0.00 0.00 0.00 4.35
310 311 5.767277 AAATCCATTTCCAAATCAAGCCT 57.233 34.783 0.00 0.00 0.00 4.58
311 312 7.920160 TTTAAATCCATTTCCAAATCAAGCC 57.080 32.000 0.00 0.00 0.00 4.35
358 359 9.723601 AGACAAAATGCACCACAAAATAAATAT 57.276 25.926 0.00 0.00 0.00 1.28
359 360 9.553064 AAGACAAAATGCACCACAAAATAAATA 57.447 25.926 0.00 0.00 0.00 1.40
360 361 8.449251 AAGACAAAATGCACCACAAAATAAAT 57.551 26.923 0.00 0.00 0.00 1.40
361 362 7.254252 CGAAGACAAAATGCACCACAAAATAAA 60.254 33.333 0.00 0.00 0.00 1.40
362 363 6.199908 CGAAGACAAAATGCACCACAAAATAA 59.800 34.615 0.00 0.00 0.00 1.40
363 364 5.689514 CGAAGACAAAATGCACCACAAAATA 59.310 36.000 0.00 0.00 0.00 1.40
364 365 4.507388 CGAAGACAAAATGCACCACAAAAT 59.493 37.500 0.00 0.00 0.00 1.82
365 366 3.862267 CGAAGACAAAATGCACCACAAAA 59.138 39.130 0.00 0.00 0.00 2.44
366 367 3.119316 ACGAAGACAAAATGCACCACAAA 60.119 39.130 0.00 0.00 0.00 2.83
367 368 2.425312 ACGAAGACAAAATGCACCACAA 59.575 40.909 0.00 0.00 0.00 3.33
368 369 2.020720 ACGAAGACAAAATGCACCACA 58.979 42.857 0.00 0.00 0.00 4.17
369 370 2.384382 CACGAAGACAAAATGCACCAC 58.616 47.619 0.00 0.00 0.00 4.16
370 371 1.336440 CCACGAAGACAAAATGCACCA 59.664 47.619 0.00 0.00 0.00 4.17
371 372 1.336755 ACCACGAAGACAAAATGCACC 59.663 47.619 0.00 0.00 0.00 5.01
372 373 2.774439 ACCACGAAGACAAAATGCAC 57.226 45.000 0.00 0.00 0.00 4.57
373 374 3.628032 TGTAACCACGAAGACAAAATGCA 59.372 39.130 0.00 0.00 0.00 3.96
374 375 3.972502 GTGTAACCACGAAGACAAAATGC 59.027 43.478 0.00 0.00 0.00 3.56
375 376 5.204833 CAGTGTAACCACGAAGACAAAATG 58.795 41.667 0.00 0.00 46.56 2.32
376 377 4.274950 CCAGTGTAACCACGAAGACAAAAT 59.725 41.667 0.00 0.00 46.56 1.82
377 378 3.623960 CCAGTGTAACCACGAAGACAAAA 59.376 43.478 0.00 0.00 46.56 2.44
378 379 3.199677 CCAGTGTAACCACGAAGACAAA 58.800 45.455 0.00 0.00 46.56 2.83
379 380 2.168936 ACCAGTGTAACCACGAAGACAA 59.831 45.455 0.00 0.00 46.56 3.18
380 381 1.758280 ACCAGTGTAACCACGAAGACA 59.242 47.619 0.00 0.00 46.56 3.41
381 382 2.132762 CACCAGTGTAACCACGAAGAC 58.867 52.381 0.00 0.00 46.56 3.01
382 383 2.033372 TCACCAGTGTAACCACGAAGA 58.967 47.619 0.00 0.00 46.56 2.87
383 384 2.132762 GTCACCAGTGTAACCACGAAG 58.867 52.381 0.00 0.00 46.56 3.79
384 385 1.758280 AGTCACCAGTGTAACCACGAA 59.242 47.619 0.00 0.00 46.56 3.85
385 386 1.405872 AGTCACCAGTGTAACCACGA 58.594 50.000 0.00 0.00 46.56 4.35
386 387 2.234300 AAGTCACCAGTGTAACCACG 57.766 50.000 0.00 0.00 46.56 4.94
387 388 6.435428 CAATAAAAGTCACCAGTGTAACCAC 58.565 40.000 0.00 0.00 42.17 4.16
388 389 5.533154 CCAATAAAAGTCACCAGTGTAACCA 59.467 40.000 0.00 0.00 37.80 3.67
389 390 5.766174 TCCAATAAAAGTCACCAGTGTAACC 59.234 40.000 0.00 0.00 37.80 2.85
390 391 6.870971 TCCAATAAAAGTCACCAGTGTAAC 57.129 37.500 0.00 0.00 0.00 2.50
391 392 8.472007 AAATCCAATAAAAGTCACCAGTGTAA 57.528 30.769 0.00 0.00 0.00 2.41
392 393 8.472007 AAAATCCAATAAAAGTCACCAGTGTA 57.528 30.769 0.00 0.00 0.00 2.90
393 394 6.976934 AAATCCAATAAAAGTCACCAGTGT 57.023 33.333 0.00 0.00 0.00 3.55
394 395 9.410556 CTTAAAATCCAATAAAAGTCACCAGTG 57.589 33.333 0.00 0.00 0.00 3.66
395 396 9.143155 ACTTAAAATCCAATAAAAGTCACCAGT 57.857 29.630 0.00 0.00 0.00 4.00
396 397 9.626045 GACTTAAAATCCAATAAAAGTCACCAG 57.374 33.333 7.86 0.00 41.42 4.00
397 398 8.581578 GGACTTAAAATCCAATAAAAGTCACCA 58.418 33.333 13.25 0.00 42.81 4.17
398 399 8.033038 GGGACTTAAAATCCAATAAAAGTCACC 58.967 37.037 13.25 9.03 42.81 4.02
399 400 8.581578 TGGGACTTAAAATCCAATAAAAGTCAC 58.418 33.333 13.25 10.77 44.06 3.67
400 401 8.713708 TGGGACTTAAAATCCAATAAAAGTCA 57.286 30.769 13.25 0.00 42.81 3.41
401 402 9.419297 GTTGGGACTTAAAATCCAATAAAAGTC 57.581 33.333 7.54 4.79 40.77 3.01
424 425 8.013378 CCCTAACAAAGTAACGTTAATCTGTTG 58.987 37.037 28.22 21.14 0.00 3.33
426 427 6.148315 GCCCTAACAAAGTAACGTTAATCTGT 59.852 38.462 8.81 8.81 0.00 3.41
427 428 6.148150 TGCCCTAACAAAGTAACGTTAATCTG 59.852 38.462 10.11 8.66 0.00 2.90
428 429 6.232692 TGCCCTAACAAAGTAACGTTAATCT 58.767 36.000 10.11 0.73 0.00 2.40
429 430 6.484818 TGCCCTAACAAAGTAACGTTAATC 57.515 37.500 10.11 0.00 0.00 1.75
430 431 6.262720 TGTTGCCCTAACAAAGTAACGTTAAT 59.737 34.615 10.11 5.91 45.86 1.40
432 433 5.121811 TGTTGCCCTAACAAAGTAACGTTA 58.878 37.500 3.29 3.29 45.86 3.18
434 435 3.543665 TGTTGCCCTAACAAAGTAACGT 58.456 40.909 0.00 0.00 45.86 3.99
477 488 7.538575 TGAAAAGCATAGTTTTTATCTGCCTC 58.461 34.615 0.00 0.00 33.34 4.70
479 490 6.254373 GCTGAAAAGCATAGTTTTTATCTGCC 59.746 38.462 0.00 0.00 33.34 4.85
519 530 5.763698 CCTGACTATCACTATGTAACCGAGA 59.236 44.000 0.00 0.00 0.00 4.04
592 607 2.233922 ACTCAACGTAGGAATGTCTGGG 59.766 50.000 0.00 0.00 0.00 4.45
595 610 7.439381 TCTTTAAACTCAACGTAGGAATGTCT 58.561 34.615 0.00 0.00 0.00 3.41
601 616 6.484308 CCCTTTTCTTTAAACTCAACGTAGGA 59.516 38.462 0.00 0.00 0.00 2.94
608 623 5.069914 GGCTTCCCCTTTTCTTTAAACTCAA 59.930 40.000 0.00 0.00 0.00 3.02
630 645 3.691609 ACGAAGATGAATTGAAGAAGGGC 59.308 43.478 0.00 0.00 0.00 5.19
666 681 1.754226 AGCAACCACACCACGAAAAAT 59.246 42.857 0.00 0.00 0.00 1.82
667 682 1.133407 GAGCAACCACACCACGAAAAA 59.867 47.619 0.00 0.00 0.00 1.94
672 687 2.203139 TGGAGCAACCACACCACG 60.203 61.111 0.00 0.00 44.64 4.94
690 706 6.832384 AGATCATCAAGTGCATTAAGGTTCAT 59.168 34.615 0.00 0.00 0.00 2.57
705 721 3.551863 GCACTAGGACCGAGATCATCAAG 60.552 52.174 8.81 0.00 0.00 3.02
714 730 2.093973 AGAACATTGCACTAGGACCGAG 60.094 50.000 0.00 0.00 0.00 4.63
721 737 2.738846 ACGAAGCAGAACATTGCACTAG 59.261 45.455 0.52 0.00 46.47 2.57
724 740 1.400242 GGACGAAGCAGAACATTGCAC 60.400 52.381 0.52 0.00 46.47 4.57
730 746 1.673920 GGTTTTGGACGAAGCAGAACA 59.326 47.619 0.00 0.00 0.00 3.18
736 752 0.872388 ACATCGGTTTTGGACGAAGC 59.128 50.000 0.00 0.00 42.88 3.86
743 759 2.288702 TGCCATGAAACATCGGTTTTGG 60.289 45.455 0.00 6.65 46.84 3.28
753 769 4.523558 TGTGATCTGAATTGCCATGAAACA 59.476 37.500 0.00 0.00 0.00 2.83
763 779 6.276091 TCTATCGACCTTGTGATCTGAATTG 58.724 40.000 0.00 0.00 0.00 2.32
775 791 8.167605 TCCTACTCTAAATTCTATCGACCTTG 57.832 38.462 0.00 0.00 0.00 3.61
776 792 8.763984 TTCCTACTCTAAATTCTATCGACCTT 57.236 34.615 0.00 0.00 0.00 3.50
777 793 8.943594 ATTCCTACTCTAAATTCTATCGACCT 57.056 34.615 0.00 0.00 0.00 3.85
788 804 9.939424 ACCTCTACACTAATTCCTACTCTAAAT 57.061 33.333 0.00 0.00 0.00 1.40
789 805 9.765295 AACCTCTACACTAATTCCTACTCTAAA 57.235 33.333 0.00 0.00 0.00 1.85
790 806 9.186837 CAACCTCTACACTAATTCCTACTCTAA 57.813 37.037 0.00 0.00 0.00 2.10
834 861 1.327303 TCCTGTTGCGCAAATTCCTT 58.673 45.000 26.87 0.00 0.00 3.36
851 878 3.059597 CGTTCAGAGTTGTCATGTGTTCC 60.060 47.826 0.00 0.00 0.00 3.62
859 886 5.220777 GGATTCAAAACGTTCAGAGTTGTCA 60.221 40.000 0.00 0.00 31.43 3.58
872 899 1.879380 TGGTGCTCTGGATTCAAAACG 59.121 47.619 0.00 0.00 0.00 3.60
882 909 0.179073 CGGTTAGGATGGTGCTCTGG 60.179 60.000 0.00 0.00 0.00 3.86
960 989 1.066787 CGAGGAAGGGACAGAGGTTTC 60.067 57.143 0.00 0.00 0.00 2.78
1075 1106 1.797211 ATAGAGACTACTGCGGCGGC 61.797 60.000 9.78 9.68 40.52 6.53
1304 1341 3.407967 GGGGCGGTGATGAAGGGA 61.408 66.667 0.00 0.00 0.00 4.20
1395 1432 2.434359 CGGCGGAGGAAGTGGAAC 60.434 66.667 0.00 0.00 0.00 3.62
1692 1729 0.609151 TCCGACAAACCGCCTTGATA 59.391 50.000 2.13 0.00 0.00 2.15
1731 1768 0.736672 TCTCGTCGAGGAGAGACACG 60.737 60.000 28.88 7.41 38.12 4.49
1732 1769 1.329292 CATCTCGTCGAGGAGAGACAC 59.671 57.143 33.43 0.00 45.59 3.67
1753 1790 1.051556 GCCTCGATCCCTTCCTTCCT 61.052 60.000 0.00 0.00 0.00 3.36
2027 2064 1.973281 CCCAGCTCAACATTGCCGT 60.973 57.895 0.00 0.00 0.00 5.68
2154 2191 5.369110 AGCCTTCATCTCCTTTATCATCTGT 59.631 40.000 0.00 0.00 0.00 3.41
2237 2274 1.156736 CGCTTCTTCAAACCGATGGT 58.843 50.000 0.00 0.00 37.65 3.55
2256 2293 5.824904 ACATATCCTCAAATTCAGCACAC 57.175 39.130 0.00 0.00 0.00 3.82
2265 2302 5.050490 CCTCGACGAAACATATCCTCAAAT 58.950 41.667 0.00 0.00 0.00 2.32
2274 2311 0.457166 CGTGCCCTCGACGAAACATA 60.457 55.000 0.00 0.00 39.21 2.29
2376 2413 1.822371 TGTGGTACTGAGCGCATTAGA 59.178 47.619 11.47 0.00 38.61 2.10
2856 2893 8.190122 TGCCACATCTTAAGCACTAAATTAATG 58.810 33.333 0.00 0.00 0.00 1.90
2887 2924 0.323360 TATGGGGAAGGCTTGTGTGC 60.323 55.000 3.46 0.00 0.00 4.57
2919 2956 4.300803 GAGCACAACAGAATGATGCAAAA 58.699 39.130 0.00 0.00 43.38 2.44
2923 2960 1.814394 TGGAGCACAACAGAATGATGC 59.186 47.619 0.00 0.00 43.38 3.91
2945 2982 2.497675 ACATCACGTAGAAGTCATGGCT 59.502 45.455 0.00 0.00 0.00 4.75
3195 3233 4.530875 AGTAAGCAATGGAATCCTTCAGG 58.469 43.478 0.00 0.00 0.00 3.86
3334 3372 7.931015 ATGTAGTACAATGGAATCCTTAGGA 57.069 36.000 7.16 2.37 35.55 2.94
3423 3463 0.775861 GGTTTGTTTGATTGCGTCGC 59.224 50.000 11.10 11.10 0.00 5.19
3424 3464 2.399396 AGGTTTGTTTGATTGCGTCG 57.601 45.000 0.00 0.00 0.00 5.12
3427 3467 3.620821 ACCAAAAGGTTTGTTTGATTGCG 59.379 39.130 0.00 0.00 38.05 4.85
3457 3497 3.809832 CCCACGTGAAGCCTATAAGATTG 59.190 47.826 19.30 0.00 0.00 2.67
3593 3635 2.176045 TGGGTCTCACATCACGTGTAT 58.824 47.619 16.51 5.06 46.44 2.29
3619 3661 1.003812 CCCTGATACACCCAAAACCGA 59.996 52.381 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.