Multiple sequence alignment - TraesCS5B01G056500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G056500 chr5B 100.000 2832 0 0 1 2832 62977216 62980047 0.000000e+00 5230.0
1 TraesCS5B01G056500 chr5B 82.485 982 124 30 1892 2832 10542476 10543450 0.000000e+00 817.0
2 TraesCS5B01G056500 chr5B 91.538 130 4 1 1626 1748 550917850 550917979 3.750000e-39 172.0
3 TraesCS5B01G056500 chr5B 89.922 129 6 1 1626 1747 197120097 197120225 2.920000e-35 159.0
4 TraesCS5B01G056500 chr5A 90.822 1460 73 21 1 1447 46274639 46276050 0.000000e+00 1897.0
5 TraesCS5B01G056500 chr5A 90.370 135 5 2 1626 1752 423145852 423145986 1.350000e-38 171.0
6 TraesCS5B01G056500 chr7B 96.493 941 31 1 1892 2832 680106057 680106995 0.000000e+00 1554.0
7 TraesCS5B01G056500 chr5D 96.072 942 35 2 1892 2832 137970500 137969560 0.000000e+00 1533.0
8 TraesCS5B01G056500 chr5D 90.723 1024 31 24 524 1526 58038577 58039557 0.000000e+00 1306.0
9 TraesCS5B01G056500 chr5D 85.491 958 122 11 1887 2832 23119238 23120190 0.000000e+00 983.0
10 TraesCS5B01G056500 chr5D 83.544 474 57 18 1892 2361 137969492 137969948 9.380000e-115 424.0
11 TraesCS5B01G056500 chr5D 83.122 474 67 10 1892 2361 23120258 23119794 1.210000e-113 420.0
12 TraesCS5B01G056500 chr5D 87.606 355 34 9 1 349 58037604 58037954 1.220000e-108 403.0
13 TraesCS5B01G056500 chr5D 87.879 132 11 4 377 503 58038234 58038365 1.760000e-32 150.0
14 TraesCS5B01G056500 chr5D 95.833 48 1 1 1542 1589 58039598 58039644 3.030000e-10 76.8
15 TraesCS5B01G056500 chr5D 91.667 48 4 0 1542 1589 58057220 58057267 1.820000e-07 67.6
16 TraesCS5B01G056500 chr5D 89.583 48 5 0 1542 1589 58054722 58054769 8.470000e-06 62.1
17 TraesCS5B01G056500 chr2B 95.450 945 33 4 1888 2832 797234316 797235250 0.000000e+00 1498.0
18 TraesCS5B01G056500 chr2B 82.090 469 58 19 1895 2361 797235315 797234871 7.410000e-101 377.0
19 TraesCS5B01G056500 chr2B 89.474 133 7 1 1626 1751 441855718 441855850 8.120000e-36 161.0
20 TraesCS5B01G056500 chr2B 89.474 133 7 1 1626 1751 704738188 704738320 8.120000e-36 161.0
21 TraesCS5B01G056500 chr4B 96.970 660 20 0 2173 2832 563217741 563218400 0.000000e+00 1109.0
22 TraesCS5B01G056500 chr4B 96.414 251 9 0 1892 2142 563216507 563216757 5.640000e-112 414.0
23 TraesCS5B01G056500 chr6A 96.569 583 20 0 1896 2478 532006506 532005924 0.000000e+00 966.0
24 TraesCS5B01G056500 chr6A 96.505 372 13 0 2461 2832 532005907 532005536 1.440000e-172 616.0
25 TraesCS5B01G056500 chr2D 91.207 671 44 6 2040 2709 610173436 610172780 0.000000e+00 898.0
26 TraesCS5B01G056500 chr3B 84.105 799 90 22 1996 2782 613751650 613750877 0.000000e+00 737.0
27 TraesCS5B01G056500 chr3B 89.189 148 7 3 1626 1765 390218375 390218229 2.900000e-40 176.0
28 TraesCS5B01G056500 chr3B 90.299 134 5 2 1626 1751 788714042 788714175 4.850000e-38 169.0
29 TraesCS5B01G056500 chr3B 90.909 77 7 0 2755 2831 563389709 563389785 1.390000e-18 104.0
30 TraesCS5B01G056500 chr3B 86.813 91 12 0 2742 2832 738692238 738692328 4.990000e-18 102.0
31 TraesCS5B01G056500 chr7A 82.182 724 119 10 1892 2612 17722958 17723674 5.190000e-172 614.0
32 TraesCS5B01G056500 chr7A 79.918 488 73 16 1895 2361 17723990 17723507 4.520000e-88 335.0
33 TraesCS5B01G056500 chr1B 90.977 133 5 1 1626 1751 1850924 1850792 3.750000e-39 172.0
34 TraesCS5B01G056500 chr2A 89.394 132 7 1 1626 1750 752852507 752852638 2.920000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G056500 chr5B 62977216 62980047 2831 False 5230.00 5230 100.00000 1 2832 1 chr5B.!!$F2 2831
1 TraesCS5B01G056500 chr5B 10542476 10543450 974 False 817.00 817 82.48500 1892 2832 1 chr5B.!!$F1 940
2 TraesCS5B01G056500 chr5A 46274639 46276050 1411 False 1897.00 1897 90.82200 1 1447 1 chr5A.!!$F1 1446
3 TraesCS5B01G056500 chr7B 680106057 680106995 938 False 1554.00 1554 96.49300 1892 2832 1 chr7B.!!$F1 940
4 TraesCS5B01G056500 chr5D 137969560 137970500 940 True 1533.00 1533 96.07200 1892 2832 1 chr5D.!!$R2 940
5 TraesCS5B01G056500 chr5D 23119238 23120190 952 False 983.00 983 85.49100 1887 2832 1 chr5D.!!$F1 945
6 TraesCS5B01G056500 chr5D 58037604 58039644 2040 False 483.95 1306 90.51025 1 1589 4 chr5D.!!$F3 1588
7 TraesCS5B01G056500 chr2B 797234316 797235250 934 False 1498.00 1498 95.45000 1888 2832 1 chr2B.!!$F3 944
8 TraesCS5B01G056500 chr4B 563216507 563218400 1893 False 761.50 1109 96.69200 1892 2832 2 chr4B.!!$F1 940
9 TraesCS5B01G056500 chr6A 532005536 532006506 970 True 791.00 966 96.53700 1896 2832 2 chr6A.!!$R1 936
10 TraesCS5B01G056500 chr2D 610172780 610173436 656 True 898.00 898 91.20700 2040 2709 1 chr2D.!!$R1 669
11 TraesCS5B01G056500 chr3B 613750877 613751650 773 True 737.00 737 84.10500 1996 2782 1 chr3B.!!$R2 786
12 TraesCS5B01G056500 chr7A 17722958 17723674 716 False 614.00 614 82.18200 1892 2612 1 chr7A.!!$F1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 1377 0.179092 CTCGCTCTGATGTGATGCCA 60.179 55.0 0.0 0.0 0.0 4.92 F
1044 1517 0.174617 CTCCTCTCCTCCAGCGAAAC 59.825 60.0 0.0 0.0 0.0 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 2236 0.037590 TAACACAAGGAAGGCGCCAT 59.962 50.0 31.54 19.26 0.00 4.40 R
2162 2801 0.948141 GAGACGAGTTGCTGCTGCTT 60.948 55.0 17.00 2.48 40.48 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 270 2.568509 CGTTTGGGGTTTAGAGGGAGTA 59.431 50.000 0.00 0.00 0.00 2.59
268 276 1.070289 GGTTTAGAGGGAGTATGGGCG 59.930 57.143 0.00 0.00 0.00 6.13
294 302 0.537653 GGGGAAGAAAGACTCTCGGG 59.462 60.000 0.00 0.00 31.02 5.14
314 322 2.359900 GCGTCAGATCTTGGGTCAAAT 58.640 47.619 0.00 0.00 0.00 2.32
334 342 6.983307 TCAAATGGTGTTGGTTGATTTTACTG 59.017 34.615 0.00 0.00 0.00 2.74
417 681 9.453830 AATAGTGGAGGTAGAGAAGGATTAATT 57.546 33.333 0.00 0.00 0.00 1.40
449 713 6.394025 AATGACGAAATACTACTCCCTCTC 57.606 41.667 0.00 0.00 0.00 3.20
499 765 7.899973 AGATCAAATTTGAACTAAAGCCATGT 58.100 30.769 24.63 5.62 38.36 3.21
505 771 6.463995 TTTGAACTAAAGCCATGTCACTTT 57.536 33.333 9.65 9.65 39.38 2.66
537 994 1.005924 GGGAGCAATTTCTTGAGGGGA 59.994 52.381 0.00 0.00 34.04 4.81
550 1007 5.316987 TCTTGAGGGGATGAAGACTTTTTC 58.683 41.667 0.00 0.00 0.00 2.29
552 1009 4.911390 TGAGGGGATGAAGACTTTTTCTC 58.089 43.478 0.00 0.00 31.02 2.87
676 1139 9.135843 CCGCGTACATATAATCTCTTTGATTAA 57.864 33.333 4.92 0.00 46.81 1.40
764 1237 3.374745 GTTGAATGAACAGTGGTTGCTG 58.625 45.455 0.00 0.00 41.92 4.41
866 1339 1.748879 GCGGTAGCCTCCAAATGCA 60.749 57.895 0.00 0.00 37.42 3.96
887 1360 4.756444 CATTCGAAATAAAGCTCGCTCTC 58.244 43.478 0.00 0.00 35.04 3.20
888 1361 2.451132 TCGAAATAAAGCTCGCTCTCG 58.549 47.619 0.00 0.00 35.04 4.04
889 1362 1.071829 CGAAATAAAGCTCGCTCTCGC 60.072 52.381 0.00 0.00 35.26 5.03
890 1363 2.197577 GAAATAAAGCTCGCTCTCGCT 58.802 47.619 0.00 0.00 38.30 4.93
891 1364 1.846541 AATAAAGCTCGCTCTCGCTC 58.153 50.000 0.00 0.00 34.96 5.03
892 1365 1.028905 ATAAAGCTCGCTCTCGCTCT 58.971 50.000 0.00 0.00 34.96 4.09
896 1369 1.658102 GCTCGCTCTCGCTCTGATG 60.658 63.158 0.00 0.00 35.26 3.07
904 1377 0.179092 CTCGCTCTGATGTGATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
947 1420 2.203480 GACCACAGGGGCAAGCAA 60.203 61.111 0.00 0.00 44.16 3.91
1027 1500 2.605366 GCCGTTTGAATACTCTGCTCTC 59.395 50.000 0.00 0.00 0.00 3.20
1040 1513 2.489275 GCTCTCCTCTCCTCCAGCG 61.489 68.421 0.00 0.00 0.00 5.18
1044 1517 0.174617 CTCCTCTCCTCCAGCGAAAC 59.825 60.000 0.00 0.00 0.00 2.78
1068 1541 2.899900 ACAGAGCAGAACACATAGACCA 59.100 45.455 0.00 0.00 0.00 4.02
1069 1542 3.056250 ACAGAGCAGAACACATAGACCAG 60.056 47.826 0.00 0.00 0.00 4.00
1070 1543 2.499289 AGAGCAGAACACATAGACCAGG 59.501 50.000 0.00 0.00 0.00 4.45
1071 1544 2.497675 GAGCAGAACACATAGACCAGGA 59.502 50.000 0.00 0.00 0.00 3.86
1072 1545 2.499289 AGCAGAACACATAGACCAGGAG 59.501 50.000 0.00 0.00 0.00 3.69
1073 1546 2.419297 GCAGAACACATAGACCAGGAGG 60.419 54.545 0.00 0.00 42.21 4.30
1228 1716 2.337532 GCACAGCAACAAGGGCAG 59.662 61.111 0.00 0.00 0.00 4.85
1349 1837 6.376864 CACTTTGATGTTGATTACCATACCCA 59.623 38.462 0.00 0.00 0.00 4.51
1438 1926 8.456471 TGCTACTAGTAATTACTGTGTACTGTG 58.544 37.037 25.27 15.88 37.10 3.66
1449 1937 8.762481 TTACTGTGTACTGTGTCCAGATATAT 57.238 34.615 5.00 0.00 41.50 0.86
1450 1938 9.856162 TTACTGTGTACTGTGTCCAGATATATA 57.144 33.333 5.00 0.00 41.50 0.86
1451 1939 8.762481 ACTGTGTACTGTGTCCAGATATATAA 57.238 34.615 8.70 0.00 41.50 0.98
1452 1940 8.630917 ACTGTGTACTGTGTCCAGATATATAAC 58.369 37.037 8.70 0.00 41.50 1.89
1455 1943 8.630917 GTGTACTGTGTCCAGATATATAACTGT 58.369 37.037 16.28 7.45 41.50 3.55
1456 1944 8.630037 TGTACTGTGTCCAGATATATAACTGTG 58.370 37.037 16.28 9.56 41.50 3.66
1457 1945 7.898014 ACTGTGTCCAGATATATAACTGTGA 57.102 36.000 16.28 11.27 41.50 3.58
1481 1969 3.008594 TGTGTAAATCTCCACCCGTTGAT 59.991 43.478 0.00 0.00 0.00 2.57
1488 1976 1.077716 CCACCCGTTGATCCCCTTC 60.078 63.158 0.00 0.00 0.00 3.46
1495 1983 0.178301 GTTGATCCCCTTCCTCGGTC 59.822 60.000 0.00 0.00 0.00 4.79
1526 2015 7.609056 ACCAGTAGTGAATTATTGTACTCGTT 58.391 34.615 0.00 0.00 0.00 3.85
1527 2016 8.092687 ACCAGTAGTGAATTATTGTACTCGTTT 58.907 33.333 0.00 0.00 0.00 3.60
1528 2017 8.380644 CCAGTAGTGAATTATTGTACTCGTTTG 58.619 37.037 0.00 0.00 0.00 2.93
1529 2018 9.135843 CAGTAGTGAATTATTGTACTCGTTTGA 57.864 33.333 0.00 0.00 0.00 2.69
1533 2022 8.656849 AGTGAATTATTGTACTCGTTTGATCAC 58.343 33.333 0.00 0.00 33.11 3.06
1534 2023 7.630987 GTGAATTATTGTACTCGTTTGATCACG 59.369 37.037 0.00 0.00 41.78 4.35
1535 2024 6.583912 ATTATTGTACTCGTTTGATCACGG 57.416 37.500 0.00 0.00 40.74 4.94
1537 2026 3.211803 TGTACTCGTTTGATCACGGAG 57.788 47.619 12.82 12.82 40.74 4.63
1538 2027 2.815503 TGTACTCGTTTGATCACGGAGA 59.184 45.455 18.65 6.54 40.74 3.71
1539 2028 3.442625 TGTACTCGTTTGATCACGGAGAT 59.557 43.478 18.65 9.13 40.74 2.75
1541 2030 3.926616 ACTCGTTTGATCACGGAGATTT 58.073 40.909 18.65 0.31 40.74 2.17
1542 2031 5.068234 ACTCGTTTGATCACGGAGATTTA 57.932 39.130 18.65 0.00 40.74 1.40
1543 2032 5.475719 ACTCGTTTGATCACGGAGATTTAA 58.524 37.500 18.65 0.00 40.74 1.52
1546 2035 5.347635 TCGTTTGATCACGGAGATTTAACAG 59.652 40.000 0.00 0.00 40.74 3.16
1547 2036 5.347635 CGTTTGATCACGGAGATTTAACAGA 59.652 40.000 0.00 0.00 37.00 3.41
1549 2038 4.433615 TGATCACGGAGATTTAACAGAGC 58.566 43.478 0.00 0.00 37.00 4.09
1550 2039 3.953712 TCACGGAGATTTAACAGAGCA 57.046 42.857 0.00 0.00 0.00 4.26
1592 2105 8.154649 GCTTAACAGCTGGTAAATGTATATGT 57.845 34.615 23.87 0.00 43.51 2.29
1593 2106 8.070171 GCTTAACAGCTGGTAAATGTATATGTG 58.930 37.037 23.87 10.11 43.51 3.21
1594 2107 9.109393 CTTAACAGCTGGTAAATGTATATGTGT 57.891 33.333 23.87 0.00 0.00 3.72
1595 2108 6.925610 ACAGCTGGTAAATGTATATGTGTG 57.074 37.500 19.93 0.00 0.00 3.82
1596 2109 6.414732 ACAGCTGGTAAATGTATATGTGTGT 58.585 36.000 19.93 0.00 0.00 3.72
1597 2110 6.884295 ACAGCTGGTAAATGTATATGTGTGTT 59.116 34.615 19.93 0.00 0.00 3.32
1598 2111 7.148255 ACAGCTGGTAAATGTATATGTGTGTTG 60.148 37.037 19.93 0.00 0.00 3.33
1599 2112 7.065683 CAGCTGGTAAATGTATATGTGTGTTGA 59.934 37.037 5.57 0.00 0.00 3.18
1600 2113 7.280876 AGCTGGTAAATGTATATGTGTGTTGAG 59.719 37.037 0.00 0.00 0.00 3.02
1601 2114 7.065803 GCTGGTAAATGTATATGTGTGTTGAGT 59.934 37.037 0.00 0.00 0.00 3.41
1602 2115 9.594478 CTGGTAAATGTATATGTGTGTTGAGTA 57.406 33.333 0.00 0.00 0.00 2.59
1608 2121 9.665719 AATGTATATGTGTGTTGAGTATGTTGA 57.334 29.630 0.00 0.00 0.00 3.18
1609 2122 8.702163 TGTATATGTGTGTTGAGTATGTTGAG 57.298 34.615 0.00 0.00 0.00 3.02
1610 2123 8.311109 TGTATATGTGTGTTGAGTATGTTGAGT 58.689 33.333 0.00 0.00 0.00 3.41
1611 2124 9.797556 GTATATGTGTGTTGAGTATGTTGAGTA 57.202 33.333 0.00 0.00 0.00 2.59
1615 2128 8.702163 TGTGTGTTGAGTATGTTGAGTATATG 57.298 34.615 0.00 0.00 0.00 1.78
1616 2129 8.311109 TGTGTGTTGAGTATGTTGAGTATATGT 58.689 33.333 0.00 0.00 0.00 2.29
1617 2130 8.595533 GTGTGTTGAGTATGTTGAGTATATGTG 58.404 37.037 0.00 0.00 0.00 3.21
1618 2131 8.311109 TGTGTTGAGTATGTTGAGTATATGTGT 58.689 33.333 0.00 0.00 0.00 3.72
1619 2132 8.595533 GTGTTGAGTATGTTGAGTATATGTGTG 58.404 37.037 0.00 0.00 0.00 3.82
1620 2133 8.311109 TGTTGAGTATGTTGAGTATATGTGTGT 58.689 33.333 0.00 0.00 0.00 3.72
1621 2134 9.151471 GTTGAGTATGTTGAGTATATGTGTGTT 57.849 33.333 0.00 0.00 0.00 3.32
1622 2135 8.702163 TGAGTATGTTGAGTATATGTGTGTTG 57.298 34.615 0.00 0.00 0.00 3.33
1623 2136 8.527810 TGAGTATGTTGAGTATATGTGTGTTGA 58.472 33.333 0.00 0.00 0.00 3.18
1624 2137 9.366216 GAGTATGTTGAGTATATGTGTGTTGAA 57.634 33.333 0.00 0.00 0.00 2.69
1625 2138 9.151471 AGTATGTTGAGTATATGTGTGTTGAAC 57.849 33.333 0.00 0.00 0.00 3.18
1626 2139 7.977789 ATGTTGAGTATATGTGTGTTGAACA 57.022 32.000 0.00 0.00 36.04 3.18
1627 2140 7.793927 TGTTGAGTATATGTGTGTTGAACAA 57.206 32.000 0.00 0.00 41.57 2.83
1628 2141 8.389779 TGTTGAGTATATGTGTGTTGAACAAT 57.610 30.769 0.00 0.00 41.57 2.71
1629 2142 8.288913 TGTTGAGTATATGTGTGTTGAACAATG 58.711 33.333 0.00 0.00 41.57 2.82
1630 2143 7.977789 TGAGTATATGTGTGTTGAACAATGT 57.022 32.000 0.00 0.00 41.57 2.71
1631 2144 9.495572 TTGAGTATATGTGTGTTGAACAATGTA 57.504 29.630 0.00 0.00 41.57 2.29
1632 2145 8.931775 TGAGTATATGTGTGTTGAACAATGTAC 58.068 33.333 0.00 3.67 41.57 2.90
1633 2146 8.263940 AGTATATGTGTGTTGAACAATGTACC 57.736 34.615 0.00 0.00 41.57 3.34
1634 2147 8.100791 AGTATATGTGTGTTGAACAATGTACCT 58.899 33.333 0.00 0.00 41.57 3.08
1635 2148 7.759489 ATATGTGTGTTGAACAATGTACCTT 57.241 32.000 0.00 0.00 41.57 3.50
1636 2149 5.242069 TGTGTGTTGAACAATGTACCTTG 57.758 39.130 0.00 9.09 41.57 3.61
1637 2150 4.041723 GTGTGTTGAACAATGTACCTTGC 58.958 43.478 10.41 0.00 41.57 4.01
1638 2151 3.067461 TGTGTTGAACAATGTACCTTGCC 59.933 43.478 10.41 4.36 35.24 4.52
1639 2152 2.625790 TGTTGAACAATGTACCTTGCCC 59.374 45.455 10.41 4.05 0.00 5.36
1640 2153 2.890945 GTTGAACAATGTACCTTGCCCT 59.109 45.455 10.41 0.00 0.00 5.19
1641 2154 3.237268 TGAACAATGTACCTTGCCCTT 57.763 42.857 10.41 0.00 0.00 3.95
1642 2155 3.571590 TGAACAATGTACCTTGCCCTTT 58.428 40.909 10.41 0.00 0.00 3.11
1643 2156 3.964031 TGAACAATGTACCTTGCCCTTTT 59.036 39.130 10.41 0.00 0.00 2.27
1644 2157 4.038642 TGAACAATGTACCTTGCCCTTTTC 59.961 41.667 10.41 7.30 0.00 2.29
1645 2158 3.844640 ACAATGTACCTTGCCCTTTTCT 58.155 40.909 10.41 0.00 0.00 2.52
1646 2159 3.573967 ACAATGTACCTTGCCCTTTTCTG 59.426 43.478 10.41 0.00 0.00 3.02
1647 2160 1.616159 TGTACCTTGCCCTTTTCTGC 58.384 50.000 0.00 0.00 0.00 4.26
1648 2161 1.133637 TGTACCTTGCCCTTTTCTGCA 60.134 47.619 0.00 0.00 35.27 4.41
1649 2162 1.541588 GTACCTTGCCCTTTTCTGCAG 59.458 52.381 7.63 7.63 38.95 4.41
1650 2163 1.291272 CCTTGCCCTTTTCTGCAGC 59.709 57.895 9.47 0.00 38.95 5.25
1651 2164 1.291272 CTTGCCCTTTTCTGCAGCC 59.709 57.895 9.47 0.00 38.95 4.85
1652 2165 2.163601 CTTGCCCTTTTCTGCAGCCC 62.164 60.000 9.47 0.00 38.95 5.19
1653 2166 3.385384 GCCCTTTTCTGCAGCCCC 61.385 66.667 9.47 0.00 0.00 5.80
1654 2167 2.442413 CCCTTTTCTGCAGCCCCT 59.558 61.111 9.47 0.00 0.00 4.79
1655 2168 1.228988 CCCTTTTCTGCAGCCCCTT 60.229 57.895 9.47 0.00 0.00 3.95
1656 2169 0.833409 CCCTTTTCTGCAGCCCCTTT 60.833 55.000 9.47 0.00 0.00 3.11
1657 2170 1.051008 CCTTTTCTGCAGCCCCTTTT 58.949 50.000 9.47 0.00 0.00 2.27
1658 2171 1.001293 CCTTTTCTGCAGCCCCTTTTC 59.999 52.381 9.47 0.00 0.00 2.29
1659 2172 1.688197 CTTTTCTGCAGCCCCTTTTCA 59.312 47.619 9.47 0.00 0.00 2.69
1660 2173 1.786937 TTTCTGCAGCCCCTTTTCAA 58.213 45.000 9.47 0.00 0.00 2.69
1661 2174 2.014010 TTCTGCAGCCCCTTTTCAAT 57.986 45.000 9.47 0.00 0.00 2.57
1662 2175 2.014010 TCTGCAGCCCCTTTTCAATT 57.986 45.000 9.47 0.00 0.00 2.32
1663 2176 2.328319 TCTGCAGCCCCTTTTCAATTT 58.672 42.857 9.47 0.00 0.00 1.82
1664 2177 2.705127 TCTGCAGCCCCTTTTCAATTTT 59.295 40.909 9.47 0.00 0.00 1.82
1665 2178 3.069289 CTGCAGCCCCTTTTCAATTTTC 58.931 45.455 0.00 0.00 0.00 2.29
1666 2179 2.437281 TGCAGCCCCTTTTCAATTTTCA 59.563 40.909 0.00 0.00 0.00 2.69
1667 2180 3.069289 GCAGCCCCTTTTCAATTTTCAG 58.931 45.455 0.00 0.00 0.00 3.02
1668 2181 3.667360 CAGCCCCTTTTCAATTTTCAGG 58.333 45.455 0.00 0.00 0.00 3.86
1669 2182 3.071457 CAGCCCCTTTTCAATTTTCAGGT 59.929 43.478 0.00 0.00 0.00 4.00
1670 2183 3.716353 AGCCCCTTTTCAATTTTCAGGTT 59.284 39.130 0.00 0.00 0.00 3.50
1671 2184 4.065088 GCCCCTTTTCAATTTTCAGGTTC 58.935 43.478 0.00 0.00 0.00 3.62
1672 2185 4.444164 GCCCCTTTTCAATTTTCAGGTTCA 60.444 41.667 0.00 0.00 0.00 3.18
1673 2186 5.299949 CCCCTTTTCAATTTTCAGGTTCAG 58.700 41.667 0.00 0.00 0.00 3.02
1674 2187 5.299949 CCCTTTTCAATTTTCAGGTTCAGG 58.700 41.667 0.00 0.00 0.00 3.86
1675 2188 5.070313 CCCTTTTCAATTTTCAGGTTCAGGA 59.930 40.000 0.00 0.00 0.00 3.86
1676 2189 5.985530 CCTTTTCAATTTTCAGGTTCAGGAC 59.014 40.000 0.00 0.00 0.00 3.85
1677 2190 6.183360 CCTTTTCAATTTTCAGGTTCAGGACT 60.183 38.462 0.00 0.00 0.00 3.85
1678 2191 7.014230 CCTTTTCAATTTTCAGGTTCAGGACTA 59.986 37.037 0.00 0.00 0.00 2.59
1679 2192 8.477419 TTTTCAATTTTCAGGTTCAGGACTAT 57.523 30.769 0.00 0.00 0.00 2.12
1680 2193 7.452880 TTCAATTTTCAGGTTCAGGACTATG 57.547 36.000 0.00 0.00 0.00 2.23
1681 2194 6.542821 TCAATTTTCAGGTTCAGGACTATGT 58.457 36.000 0.00 0.00 0.00 2.29
1682 2195 7.685481 TCAATTTTCAGGTTCAGGACTATGTA 58.315 34.615 0.00 0.00 0.00 2.29
1683 2196 8.160765 TCAATTTTCAGGTTCAGGACTATGTAA 58.839 33.333 0.00 0.00 0.00 2.41
1684 2197 8.960591 CAATTTTCAGGTTCAGGACTATGTAAT 58.039 33.333 0.00 0.00 0.00 1.89
1685 2198 9.533831 AATTTTCAGGTTCAGGACTATGTAATT 57.466 29.630 0.00 0.00 0.00 1.40
1686 2199 8.561738 TTTTCAGGTTCAGGACTATGTAATTC 57.438 34.615 0.00 0.00 0.00 2.17
1687 2200 6.867519 TCAGGTTCAGGACTATGTAATTCA 57.132 37.500 0.00 0.00 0.00 2.57
1688 2201 7.437713 TCAGGTTCAGGACTATGTAATTCAT 57.562 36.000 0.00 0.00 40.25 2.57
1689 2202 7.275183 TCAGGTTCAGGACTATGTAATTCATG 58.725 38.462 0.00 0.00 37.91 3.07
1690 2203 7.050377 CAGGTTCAGGACTATGTAATTCATGT 58.950 38.462 0.00 0.00 37.91 3.21
1691 2204 7.554118 CAGGTTCAGGACTATGTAATTCATGTT 59.446 37.037 0.00 0.00 37.91 2.71
1692 2205 7.554118 AGGTTCAGGACTATGTAATTCATGTTG 59.446 37.037 0.00 0.00 37.91 3.33
1693 2206 7.336931 GGTTCAGGACTATGTAATTCATGTTGT 59.663 37.037 0.00 0.00 37.91 3.32
1694 2207 8.391106 GTTCAGGACTATGTAATTCATGTTGTC 58.609 37.037 0.00 0.00 37.91 3.18
1695 2208 7.851228 TCAGGACTATGTAATTCATGTTGTCT 58.149 34.615 0.00 0.00 37.91 3.41
1696 2209 8.977412 TCAGGACTATGTAATTCATGTTGTCTA 58.023 33.333 0.00 0.00 37.91 2.59
1697 2210 9.770097 CAGGACTATGTAATTCATGTTGTCTAT 57.230 33.333 0.00 0.00 37.91 1.98
1698 2211 9.770097 AGGACTATGTAATTCATGTTGTCTATG 57.230 33.333 0.00 0.00 37.91 2.23
1699 2212 9.764363 GGACTATGTAATTCATGTTGTCTATGA 57.236 33.333 0.00 0.00 37.91 2.15
1704 2217 9.671279 ATGTAATTCATGTTGTCTATGAGTTGA 57.329 29.630 0.00 0.00 35.90 3.18
1705 2218 9.500785 TGTAATTCATGTTGTCTATGAGTTGAA 57.499 29.630 0.00 0.00 35.90 2.69
1708 2221 8.797350 ATTCATGTTGTCTATGAGTTGAATGA 57.203 30.769 0.00 0.00 36.07 2.57
1709 2222 8.620116 TTCATGTTGTCTATGAGTTGAATGAA 57.380 30.769 0.00 0.00 36.07 2.57
1710 2223 8.620116 TCATGTTGTCTATGAGTTGAATGAAA 57.380 30.769 0.00 0.00 31.35 2.69
1711 2224 9.234827 TCATGTTGTCTATGAGTTGAATGAAAT 57.765 29.630 0.00 0.00 31.35 2.17
1714 2227 9.725019 TGTTGTCTATGAGTTGAATGAAATAGT 57.275 29.630 0.00 0.00 0.00 2.12
1715 2228 9.979270 GTTGTCTATGAGTTGAATGAAATAGTG 57.021 33.333 0.00 0.00 0.00 2.74
1716 2229 8.722480 TGTCTATGAGTTGAATGAAATAGTGG 57.278 34.615 0.00 0.00 0.00 4.00
1717 2230 7.280876 TGTCTATGAGTTGAATGAAATAGTGGC 59.719 37.037 0.00 0.00 0.00 5.01
1718 2231 4.944962 TGAGTTGAATGAAATAGTGGCG 57.055 40.909 0.00 0.00 0.00 5.69
1719 2232 3.126858 TGAGTTGAATGAAATAGTGGCGC 59.873 43.478 0.00 0.00 0.00 6.53
1720 2233 3.347216 AGTTGAATGAAATAGTGGCGCT 58.653 40.909 7.64 5.62 0.00 5.92
1721 2234 3.758554 AGTTGAATGAAATAGTGGCGCTT 59.241 39.130 5.61 0.00 0.00 4.68
1722 2235 3.763097 TGAATGAAATAGTGGCGCTTG 57.237 42.857 5.61 0.00 0.00 4.01
1723 2236 3.342719 TGAATGAAATAGTGGCGCTTGA 58.657 40.909 5.61 0.00 0.00 3.02
1724 2237 3.947196 TGAATGAAATAGTGGCGCTTGAT 59.053 39.130 5.61 0.00 0.00 2.57
1725 2238 3.976793 ATGAAATAGTGGCGCTTGATG 57.023 42.857 5.61 0.00 0.00 3.07
1726 2239 2.016318 TGAAATAGTGGCGCTTGATGG 58.984 47.619 5.61 0.00 0.00 3.51
1727 2240 0.740737 AAATAGTGGCGCTTGATGGC 59.259 50.000 5.61 0.00 0.00 4.40
1735 2248 2.439156 GCTTGATGGCGCCTTCCT 60.439 61.111 32.46 14.46 0.00 3.36
1736 2249 2.048603 GCTTGATGGCGCCTTCCTT 61.049 57.895 32.46 12.21 0.00 3.36
1737 2250 1.805254 CTTGATGGCGCCTTCCTTG 59.195 57.895 32.46 20.75 0.00 3.61
1738 2251 0.962356 CTTGATGGCGCCTTCCTTGT 60.962 55.000 32.46 9.85 0.00 3.16
1739 2252 1.243342 TTGATGGCGCCTTCCTTGTG 61.243 55.000 32.46 0.00 0.00 3.33
1740 2253 1.675641 GATGGCGCCTTCCTTGTGT 60.676 57.895 29.70 1.76 0.00 3.72
1741 2254 1.228552 ATGGCGCCTTCCTTGTGTT 60.229 52.632 29.70 0.00 0.00 3.32
1742 2255 0.037590 ATGGCGCCTTCCTTGTGTTA 59.962 50.000 29.70 1.81 0.00 2.41
1743 2256 0.179015 TGGCGCCTTCCTTGTGTTAA 60.179 50.000 29.70 0.00 0.00 2.01
1744 2257 0.955905 GGCGCCTTCCTTGTGTTAAA 59.044 50.000 22.15 0.00 0.00 1.52
1745 2258 1.338655 GGCGCCTTCCTTGTGTTAAAA 59.661 47.619 22.15 0.00 0.00 1.52
1746 2259 2.223852 GGCGCCTTCCTTGTGTTAAAAA 60.224 45.455 22.15 0.00 0.00 1.94
1769 2282 5.514500 AAAAGCTGGTAAGTAATGGAGGA 57.486 39.130 0.00 0.00 0.00 3.71
1770 2283 5.717119 AAAGCTGGTAAGTAATGGAGGAT 57.283 39.130 0.00 0.00 0.00 3.24
1771 2284 5.717119 AAGCTGGTAAGTAATGGAGGATT 57.283 39.130 0.00 0.00 0.00 3.01
1772 2285 5.717119 AGCTGGTAAGTAATGGAGGATTT 57.283 39.130 0.00 0.00 0.00 2.17
1773 2286 5.440610 AGCTGGTAAGTAATGGAGGATTTG 58.559 41.667 0.00 0.00 0.00 2.32
1774 2287 4.580580 GCTGGTAAGTAATGGAGGATTTGG 59.419 45.833 0.00 0.00 0.00 3.28
1775 2288 5.124036 TGGTAAGTAATGGAGGATTTGGG 57.876 43.478 0.00 0.00 0.00 4.12
1776 2289 4.079443 TGGTAAGTAATGGAGGATTTGGGG 60.079 45.833 0.00 0.00 0.00 4.96
1777 2290 2.755952 AGTAATGGAGGATTTGGGGC 57.244 50.000 0.00 0.00 0.00 5.80
1778 2291 2.217776 AGTAATGGAGGATTTGGGGCT 58.782 47.619 0.00 0.00 0.00 5.19
1779 2292 2.091665 AGTAATGGAGGATTTGGGGCTG 60.092 50.000 0.00 0.00 0.00 4.85
1780 2293 1.009997 AATGGAGGATTTGGGGCTGA 58.990 50.000 0.00 0.00 0.00 4.26
1781 2294 0.554792 ATGGAGGATTTGGGGCTGAG 59.445 55.000 0.00 0.00 0.00 3.35
1782 2295 1.454663 GGAGGATTTGGGGCTGAGC 60.455 63.158 0.00 0.00 0.00 4.26
1783 2296 1.304282 GAGGATTTGGGGCTGAGCA 59.696 57.895 6.82 0.00 0.00 4.26
1784 2297 1.000396 AGGATTTGGGGCTGAGCAC 60.000 57.895 6.82 0.74 0.00 4.40
1792 2305 2.695314 GGGCTGAGCACCTTATTCG 58.305 57.895 6.82 0.00 0.00 3.34
1793 2306 0.107654 GGGCTGAGCACCTTATTCGT 60.108 55.000 6.82 0.00 0.00 3.85
1794 2307 1.679032 GGGCTGAGCACCTTATTCGTT 60.679 52.381 6.82 0.00 0.00 3.85
1795 2308 2.084546 GGCTGAGCACCTTATTCGTTT 58.915 47.619 6.82 0.00 0.00 3.60
1796 2309 2.096013 GGCTGAGCACCTTATTCGTTTC 59.904 50.000 6.82 0.00 0.00 2.78
1797 2310 3.003480 GCTGAGCACCTTATTCGTTTCT 58.997 45.455 0.00 0.00 0.00 2.52
1798 2311 3.437049 GCTGAGCACCTTATTCGTTTCTT 59.563 43.478 0.00 0.00 0.00 2.52
1799 2312 4.670221 GCTGAGCACCTTATTCGTTTCTTG 60.670 45.833 0.00 0.00 0.00 3.02
1800 2313 3.188460 TGAGCACCTTATTCGTTTCTTGC 59.812 43.478 0.00 0.00 0.00 4.01
1801 2314 3.146066 AGCACCTTATTCGTTTCTTGCA 58.854 40.909 0.00 0.00 0.00 4.08
1802 2315 3.758554 AGCACCTTATTCGTTTCTTGCAT 59.241 39.130 0.00 0.00 0.00 3.96
1803 2316 4.941263 AGCACCTTATTCGTTTCTTGCATA 59.059 37.500 0.00 0.00 0.00 3.14
1804 2317 5.414454 AGCACCTTATTCGTTTCTTGCATAA 59.586 36.000 0.00 0.00 0.00 1.90
1805 2318 6.072175 AGCACCTTATTCGTTTCTTGCATAAA 60.072 34.615 0.00 0.00 0.00 1.40
1806 2319 6.584563 GCACCTTATTCGTTTCTTGCATAAAA 59.415 34.615 0.00 0.00 0.00 1.52
1807 2320 7.201350 GCACCTTATTCGTTTCTTGCATAAAAG 60.201 37.037 0.00 0.00 0.00 2.27
1808 2321 8.020819 CACCTTATTCGTTTCTTGCATAAAAGA 58.979 33.333 6.59 6.59 34.36 2.52
1809 2322 8.021396 ACCTTATTCGTTTCTTGCATAAAAGAC 58.979 33.333 9.22 0.00 35.92 3.01
1810 2323 7.484959 CCTTATTCGTTTCTTGCATAAAAGACC 59.515 37.037 9.22 0.00 35.92 3.85
1811 2324 4.759516 TCGTTTCTTGCATAAAAGACCC 57.240 40.909 6.59 0.00 35.92 4.46
1812 2325 4.394729 TCGTTTCTTGCATAAAAGACCCT 58.605 39.130 6.59 0.00 35.92 4.34
1813 2326 5.553123 TCGTTTCTTGCATAAAAGACCCTA 58.447 37.500 6.59 0.00 35.92 3.53
1814 2327 6.177610 TCGTTTCTTGCATAAAAGACCCTAT 58.822 36.000 6.59 0.00 35.92 2.57
1815 2328 6.093495 TCGTTTCTTGCATAAAAGACCCTATG 59.907 38.462 6.59 0.00 35.92 2.23
1816 2329 5.835113 TTCTTGCATAAAAGACCCTATGC 57.165 39.130 7.03 7.03 46.96 3.14
1820 2333 4.981806 GCATAAAAGACCCTATGCACAA 57.018 40.909 8.75 0.00 46.35 3.33
1821 2334 5.323371 GCATAAAAGACCCTATGCACAAA 57.677 39.130 8.75 0.00 46.35 2.83
1822 2335 5.719173 GCATAAAAGACCCTATGCACAAAA 58.281 37.500 8.75 0.00 46.35 2.44
1823 2336 6.162777 GCATAAAAGACCCTATGCACAAAAA 58.837 36.000 8.75 0.00 46.35 1.94
1846 2359 7.803279 AAAGATTAAAGAAATACCCTAGGCG 57.197 36.000 2.05 0.00 0.00 5.52
1847 2360 6.496144 AGATTAAAGAAATACCCTAGGCGT 57.504 37.500 2.05 5.67 0.00 5.68
1848 2361 7.607615 AGATTAAAGAAATACCCTAGGCGTA 57.392 36.000 2.05 7.89 0.00 4.42
1849 2362 8.203681 AGATTAAAGAAATACCCTAGGCGTAT 57.796 34.615 14.02 14.02 0.00 3.06
1850 2363 9.317827 AGATTAAAGAAATACCCTAGGCGTATA 57.682 33.333 18.01 6.39 0.00 1.47
1851 2364 9.363763 GATTAAAGAAATACCCTAGGCGTATAC 57.636 37.037 18.01 15.38 0.00 1.47
1852 2365 6.736110 AAAGAAATACCCTAGGCGTATACA 57.264 37.500 18.01 0.02 0.00 2.29
1853 2366 6.736110 AAGAAATACCCTAGGCGTATACAA 57.264 37.500 18.01 0.00 0.00 2.41
1854 2367 6.094193 AGAAATACCCTAGGCGTATACAAC 57.906 41.667 18.01 11.91 0.00 3.32
1855 2368 5.837438 AGAAATACCCTAGGCGTATACAACT 59.163 40.000 18.01 13.24 0.00 3.16
1856 2369 7.006509 AGAAATACCCTAGGCGTATACAACTA 58.993 38.462 18.01 3.81 0.00 2.24
1857 2370 6.830873 AATACCCTAGGCGTATACAACTAG 57.169 41.667 18.01 17.68 34.21 2.57
1858 2371 4.176120 ACCCTAGGCGTATACAACTAGT 57.824 45.455 20.67 0.00 32.91 2.57
1859 2372 5.310409 ACCCTAGGCGTATACAACTAGTA 57.690 43.478 20.67 0.00 37.06 1.82
1860 2373 5.066593 ACCCTAGGCGTATACAACTAGTAC 58.933 45.833 20.67 0.00 35.05 2.73
1861 2374 4.457257 CCCTAGGCGTATACAACTAGTACC 59.543 50.000 20.67 4.51 35.05 3.34
1862 2375 5.065914 CCTAGGCGTATACAACTAGTACCA 58.934 45.833 20.67 0.00 35.05 3.25
1863 2376 5.532406 CCTAGGCGTATACAACTAGTACCAA 59.468 44.000 20.67 0.00 35.05 3.67
1864 2377 5.920193 AGGCGTATACAACTAGTACCAAA 57.080 39.130 3.32 0.00 35.05 3.28
1865 2378 6.475596 AGGCGTATACAACTAGTACCAAAT 57.524 37.500 3.32 0.00 35.05 2.32
1866 2379 6.510536 AGGCGTATACAACTAGTACCAAATC 58.489 40.000 3.32 0.00 35.05 2.17
1867 2380 6.323225 AGGCGTATACAACTAGTACCAAATCT 59.677 38.462 3.32 0.00 35.05 2.40
1868 2381 7.503566 AGGCGTATACAACTAGTACCAAATCTA 59.496 37.037 3.32 0.00 35.05 1.98
1869 2382 8.137437 GGCGTATACAACTAGTACCAAATCTAA 58.863 37.037 3.32 0.00 35.05 2.10
1870 2383 8.962111 GCGTATACAACTAGTACCAAATCTAAC 58.038 37.037 3.32 0.00 35.05 2.34
1871 2384 9.455847 CGTATACAACTAGTACCAAATCTAACC 57.544 37.037 3.32 0.00 35.05 2.85
1874 2387 7.312415 ACAACTAGTACCAAATCTAACCTGT 57.688 36.000 0.00 0.00 0.00 4.00
1875 2388 7.159372 ACAACTAGTACCAAATCTAACCTGTG 58.841 38.462 0.00 0.00 0.00 3.66
1876 2389 6.295719 ACTAGTACCAAATCTAACCTGTGG 57.704 41.667 0.00 0.00 35.39 4.17
1877 2390 3.951663 AGTACCAAATCTAACCTGTGGC 58.048 45.455 0.00 0.00 32.27 5.01
1878 2391 2.969821 ACCAAATCTAACCTGTGGCA 57.030 45.000 0.00 0.00 32.27 4.92
1879 2392 2.795329 ACCAAATCTAACCTGTGGCAG 58.205 47.619 0.00 0.00 32.27 4.85
1880 2393 2.108250 ACCAAATCTAACCTGTGGCAGT 59.892 45.455 0.00 0.00 32.27 4.40
1881 2394 3.329520 ACCAAATCTAACCTGTGGCAGTA 59.670 43.478 0.00 0.00 32.27 2.74
1882 2395 4.202524 ACCAAATCTAACCTGTGGCAGTAA 60.203 41.667 0.00 0.00 32.27 2.24
1883 2396 4.396166 CCAAATCTAACCTGTGGCAGTAAG 59.604 45.833 0.00 0.00 0.00 2.34
1884 2397 2.762535 TCTAACCTGTGGCAGTAAGC 57.237 50.000 0.00 0.00 44.65 3.09
2089 2630 2.557869 TGGAATTACCAGCTACCAGGT 58.442 47.619 0.00 0.00 44.64 4.00
2123 2757 2.355115 ACGGAGTTTGGATGGGCC 59.645 61.111 0.00 0.00 37.78 5.80
2194 3695 0.894184 TCGTCTCTCCCGTTCTGCTT 60.894 55.000 0.00 0.00 0.00 3.91
2550 4088 6.754193 TCTTTAAAATCGGCCTTCAAATTGT 58.246 32.000 0.00 0.00 0.00 2.71
2582 4120 6.660521 TCTCAGTCAAATGTGCCTATTTTCAT 59.339 34.615 0.00 0.00 0.00 2.57
2596 4134 6.712547 GCCTATTTTCATACCTGCTAACATCT 59.287 38.462 0.00 0.00 0.00 2.90
2617 4173 4.767409 TCTAGTAGAACAGAGAGCAAGCAA 59.233 41.667 0.00 0.00 0.00 3.91
2740 4298 4.994471 CGCTGCCACCTGCTGTCA 62.994 66.667 0.00 0.00 42.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.672439 GCAAACACGTTTTTCATAATATTGCG 59.328 34.615 0.00 0.00 0.00 4.85
60 65 4.188247 TCTCTCCAAATTCGATTGACGT 57.812 40.909 0.26 0.00 43.13 4.34
118 124 2.074230 CTGTTTGAAGCCTTGCCGCA 62.074 55.000 0.00 0.00 0.00 5.69
193 200 1.134310 ACCGGAACTCGTCAAACCTTT 60.134 47.619 9.46 0.00 37.11 3.11
210 217 4.430765 CGACCTCCCCGAACACCG 62.431 72.222 0.00 0.00 38.18 4.94
268 276 1.007580 GTCTTTCTTCCCCGCGAATC 58.992 55.000 8.23 0.00 0.00 2.52
294 302 1.808411 TTTGACCCAAGATCTGACGC 58.192 50.000 0.00 0.00 0.00 5.19
314 322 4.537751 TCCAGTAAAATCAACCAACACCA 58.462 39.130 0.00 0.00 0.00 4.17
365 373 4.817874 TGGTTTCTTTTTCTTAGGGGGA 57.182 40.909 0.00 0.00 0.00 4.81
393 654 8.065627 TCAATTAATCCTTCTCTACCTCCACTA 58.934 37.037 0.00 0.00 0.00 2.74
417 681 7.375834 AGTAGTATTTCGTCATTTGTCACTCA 58.624 34.615 0.00 0.00 0.00 3.41
464 730 7.373493 AGTTCAAATTTGATCTAAAGCCACAG 58.627 34.615 23.97 0.00 35.94 3.66
476 742 7.599998 GTGACATGGCTTTAGTTCAAATTTGAT 59.400 33.333 21.10 10.31 37.00 2.57
505 771 2.746279 TTGCTCCCTCTGGTGAAAAA 57.254 45.000 0.00 0.00 0.00 1.94
510 967 2.490903 CAAGAAATTGCTCCCTCTGGTG 59.509 50.000 0.00 0.00 0.00 4.17
512 969 3.015327 CTCAAGAAATTGCTCCCTCTGG 58.985 50.000 0.00 0.00 0.00 3.86
522 979 5.259632 AGTCTTCATCCCCTCAAGAAATTG 58.740 41.667 0.00 0.00 0.00 2.32
568 1031 9.706846 GATTCTTTGTGAAGGTTTTTCATTTTG 57.293 29.630 0.00 0.00 38.18 2.44
677 1140 2.223845 CGTTCATGCACATCACAAGTGA 59.776 45.455 5.24 5.24 44.59 3.41
736 1209 2.094258 CACTGTTCATTCAACGGATCCG 59.906 50.000 32.20 32.20 43.39 4.18
866 1339 3.487574 CGAGAGCGAGCTTTATTTCGAAT 59.512 43.478 0.00 0.00 40.82 3.34
887 1360 1.306148 ATTGGCATCACATCAGAGCG 58.694 50.000 0.00 0.00 0.00 5.03
888 1361 3.190744 CCATATTGGCATCACATCAGAGC 59.809 47.826 0.00 0.00 0.00 4.09
947 1420 6.406624 CGTTATTTATAGAGGACAGTGGGTGT 60.407 42.308 0.00 0.00 44.49 4.16
1027 1500 0.174617 GAGTTTCGCTGGAGGAGAGG 59.825 60.000 0.00 0.00 0.00 3.69
1040 1513 3.198068 TGTGTTCTGCTCTGTGAGTTTC 58.802 45.455 0.00 0.00 31.39 2.78
1044 1517 4.172505 GTCTATGTGTTCTGCTCTGTGAG 58.827 47.826 0.00 0.00 0.00 3.51
1068 1541 2.877154 ACCATCCTGTATGTCCTCCT 57.123 50.000 0.00 0.00 33.34 3.69
1069 1542 2.771943 TGAACCATCCTGTATGTCCTCC 59.228 50.000 0.00 0.00 33.34 4.30
1070 1543 4.192317 GTTGAACCATCCTGTATGTCCTC 58.808 47.826 0.00 0.00 33.34 3.71
1071 1544 3.369471 CGTTGAACCATCCTGTATGTCCT 60.369 47.826 0.00 0.00 33.34 3.85
1072 1545 2.936498 CGTTGAACCATCCTGTATGTCC 59.064 50.000 0.00 0.00 33.34 4.02
1073 1546 2.936498 CCGTTGAACCATCCTGTATGTC 59.064 50.000 0.00 0.00 33.34 3.06
1175 1663 1.750399 CTGCTGGTAATGCCGCCTT 60.750 57.895 2.56 0.00 41.21 4.35
1349 1837 0.741326 CCACGATCGAGATCACCAGT 59.259 55.000 24.34 0.00 37.69 4.00
1449 1937 6.653320 GGTGGAGATTTACACATTCACAGTTA 59.347 38.462 0.36 0.00 39.31 2.24
1450 1938 5.473504 GGTGGAGATTTACACATTCACAGTT 59.526 40.000 0.36 0.00 39.31 3.16
1451 1939 5.003804 GGTGGAGATTTACACATTCACAGT 58.996 41.667 0.36 0.00 39.31 3.55
1452 1940 4.396166 GGGTGGAGATTTACACATTCACAG 59.604 45.833 0.36 0.00 39.31 3.66
1455 1943 3.008594 ACGGGTGGAGATTTACACATTCA 59.991 43.478 0.36 0.00 39.31 2.57
1456 1944 3.606687 ACGGGTGGAGATTTACACATTC 58.393 45.455 0.36 0.00 39.31 2.67
1457 1945 3.713826 ACGGGTGGAGATTTACACATT 57.286 42.857 0.36 0.00 39.31 2.71
1481 1969 4.377760 AGCGACCGAGGAAGGGGA 62.378 66.667 0.00 0.00 35.02 4.81
1488 1976 1.592400 TACTGGTTGAGCGACCGAGG 61.592 60.000 2.60 0.00 42.83 4.63
1495 1983 5.351465 ACAATAATTCACTACTGGTTGAGCG 59.649 40.000 0.00 0.00 0.00 5.03
1526 2015 4.870426 GCTCTGTTAAATCTCCGTGATCAA 59.130 41.667 0.00 0.00 33.57 2.57
1527 2016 4.081697 TGCTCTGTTAAATCTCCGTGATCA 60.082 41.667 0.00 0.00 33.57 2.92
1528 2017 4.433615 TGCTCTGTTAAATCTCCGTGATC 58.566 43.478 0.00 0.00 33.57 2.92
1529 2018 4.081420 ACTGCTCTGTTAAATCTCCGTGAT 60.081 41.667 0.00 0.00 36.89 3.06
1531 2020 3.589988 ACTGCTCTGTTAAATCTCCGTG 58.410 45.455 0.00 0.00 0.00 4.94
1533 2022 3.997021 ACAACTGCTCTGTTAAATCTCCG 59.003 43.478 0.00 0.00 0.00 4.63
1534 2023 5.703130 AGAACAACTGCTCTGTTAAATCTCC 59.297 40.000 0.00 0.00 37.14 3.71
1535 2024 6.425114 TGAGAACAACTGCTCTGTTAAATCTC 59.575 38.462 14.34 14.34 37.14 2.75
1537 2026 6.366630 GTGAGAACAACTGCTCTGTTAAATC 58.633 40.000 0.00 0.96 37.14 2.17
1538 2027 5.239525 GGTGAGAACAACTGCTCTGTTAAAT 59.760 40.000 0.00 0.00 37.14 1.40
1539 2028 4.574828 GGTGAGAACAACTGCTCTGTTAAA 59.425 41.667 0.00 0.00 37.14 1.52
1541 2030 3.728845 GGTGAGAACAACTGCTCTGTTA 58.271 45.455 0.00 0.00 37.14 2.41
1542 2031 2.565841 GGTGAGAACAACTGCTCTGTT 58.434 47.619 0.00 0.00 39.69 3.16
1543 2032 1.539065 CGGTGAGAACAACTGCTCTGT 60.539 52.381 0.00 0.00 32.44 3.41
1546 2035 0.861837 CACGGTGAGAACAACTGCTC 59.138 55.000 0.74 0.00 0.00 4.26
1547 2036 0.178068 ACACGGTGAGAACAACTGCT 59.822 50.000 16.29 0.00 0.00 4.24
1549 2038 0.304705 GCACACGGTGAGAACAACTG 59.695 55.000 16.29 0.81 35.23 3.16
1550 2039 0.178068 AGCACACGGTGAGAACAACT 59.822 50.000 16.29 0.00 35.23 3.16
1589 2102 9.317936 CATATACTCAACATACTCAACACACAT 57.682 33.333 0.00 0.00 0.00 3.21
1590 2103 8.311109 ACATATACTCAACATACTCAACACACA 58.689 33.333 0.00 0.00 0.00 3.72
1591 2104 8.595533 CACATATACTCAACATACTCAACACAC 58.404 37.037 0.00 0.00 0.00 3.82
1592 2105 8.311109 ACACATATACTCAACATACTCAACACA 58.689 33.333 0.00 0.00 0.00 3.72
1593 2106 8.595533 CACACATATACTCAACATACTCAACAC 58.404 37.037 0.00 0.00 0.00 3.32
1594 2107 8.311109 ACACACATATACTCAACATACTCAACA 58.689 33.333 0.00 0.00 0.00 3.33
1595 2108 8.703604 ACACACATATACTCAACATACTCAAC 57.296 34.615 0.00 0.00 0.00 3.18
1596 2109 9.150348 CAACACACATATACTCAACATACTCAA 57.850 33.333 0.00 0.00 0.00 3.02
1597 2110 8.527810 TCAACACACATATACTCAACATACTCA 58.472 33.333 0.00 0.00 0.00 3.41
1598 2111 8.926715 TCAACACACATATACTCAACATACTC 57.073 34.615 0.00 0.00 0.00 2.59
1599 2112 9.151471 GTTCAACACACATATACTCAACATACT 57.849 33.333 0.00 0.00 0.00 2.12
1600 2113 8.931775 TGTTCAACACACATATACTCAACATAC 58.068 33.333 0.00 0.00 0.00 2.39
1601 2114 9.495572 TTGTTCAACACACATATACTCAACATA 57.504 29.630 0.00 0.00 33.98 2.29
1602 2115 7.977789 TGTTCAACACACATATACTCAACAT 57.022 32.000 0.00 0.00 0.00 2.71
1603 2116 7.793927 TTGTTCAACACACATATACTCAACA 57.206 32.000 0.00 0.00 33.98 3.33
1604 2117 8.289618 ACATTGTTCAACACACATATACTCAAC 58.710 33.333 0.00 0.00 33.98 3.18
1605 2118 8.389779 ACATTGTTCAACACACATATACTCAA 57.610 30.769 0.00 0.00 33.98 3.02
1606 2119 7.977789 ACATTGTTCAACACACATATACTCA 57.022 32.000 0.00 0.00 33.98 3.41
1607 2120 8.388103 GGTACATTGTTCAACACACATATACTC 58.612 37.037 0.00 0.00 33.98 2.59
1608 2121 8.100791 AGGTACATTGTTCAACACACATATACT 58.899 33.333 0.00 0.00 33.98 2.12
1609 2122 8.263940 AGGTACATTGTTCAACACACATATAC 57.736 34.615 0.00 0.00 33.98 1.47
1610 2123 8.726068 CAAGGTACATTGTTCAACACACATATA 58.274 33.333 12.02 0.00 33.98 0.86
1611 2124 7.592938 CAAGGTACATTGTTCAACACACATAT 58.407 34.615 12.02 0.00 33.98 1.78
1612 2125 6.514212 GCAAGGTACATTGTTCAACACACATA 60.514 38.462 20.31 0.00 33.98 2.29
1613 2126 5.735922 GCAAGGTACATTGTTCAACACACAT 60.736 40.000 20.31 0.00 33.98 3.21
1614 2127 4.439426 GCAAGGTACATTGTTCAACACACA 60.439 41.667 20.31 0.00 33.98 3.72
1615 2128 4.041723 GCAAGGTACATTGTTCAACACAC 58.958 43.478 20.31 0.00 33.98 3.82
1616 2129 3.067461 GGCAAGGTACATTGTTCAACACA 59.933 43.478 20.31 0.00 32.56 3.72
1617 2130 3.552068 GGGCAAGGTACATTGTTCAACAC 60.552 47.826 20.31 2.01 32.56 3.32
1618 2131 2.625790 GGGCAAGGTACATTGTTCAACA 59.374 45.455 20.31 0.00 32.56 3.33
1619 2132 2.890945 AGGGCAAGGTACATTGTTCAAC 59.109 45.455 20.31 4.44 32.56 3.18
1620 2133 3.237268 AGGGCAAGGTACATTGTTCAA 57.763 42.857 20.31 0.00 32.56 2.69
1621 2134 2.969821 AGGGCAAGGTACATTGTTCA 57.030 45.000 20.31 0.00 32.56 3.18
1622 2135 4.280929 AGAAAAGGGCAAGGTACATTGTTC 59.719 41.667 20.31 15.00 32.56 3.18
1623 2136 4.039124 CAGAAAAGGGCAAGGTACATTGTT 59.961 41.667 20.31 7.36 32.56 2.83
1624 2137 3.573967 CAGAAAAGGGCAAGGTACATTGT 59.426 43.478 20.31 0.41 32.56 2.71
1625 2138 3.614870 GCAGAAAAGGGCAAGGTACATTG 60.615 47.826 15.70 15.70 0.00 2.82
1626 2139 2.562738 GCAGAAAAGGGCAAGGTACATT 59.437 45.455 0.00 0.00 0.00 2.71
1627 2140 2.171003 GCAGAAAAGGGCAAGGTACAT 58.829 47.619 0.00 0.00 0.00 2.29
1628 2141 1.133637 TGCAGAAAAGGGCAAGGTACA 60.134 47.619 0.00 0.00 37.03 2.90
1629 2142 1.541588 CTGCAGAAAAGGGCAAGGTAC 59.458 52.381 8.42 0.00 39.93 3.34
1630 2143 1.909700 CTGCAGAAAAGGGCAAGGTA 58.090 50.000 8.42 0.00 39.93 3.08
1631 2144 1.466851 GCTGCAGAAAAGGGCAAGGT 61.467 55.000 20.43 0.00 39.93 3.50
1632 2145 1.291272 GCTGCAGAAAAGGGCAAGG 59.709 57.895 20.43 0.00 39.93 3.61
1633 2146 1.291272 GGCTGCAGAAAAGGGCAAG 59.709 57.895 20.43 0.00 39.93 4.01
1634 2147 2.209315 GGGCTGCAGAAAAGGGCAA 61.209 57.895 20.43 0.00 39.93 4.52
1635 2148 2.601367 GGGCTGCAGAAAAGGGCA 60.601 61.111 20.43 0.00 38.52 5.36
1636 2149 3.385384 GGGGCTGCAGAAAAGGGC 61.385 66.667 20.43 1.38 0.00 5.19
1637 2150 0.833409 AAAGGGGCTGCAGAAAAGGG 60.833 55.000 20.43 0.00 0.00 3.95
1638 2151 1.001293 GAAAAGGGGCTGCAGAAAAGG 59.999 52.381 20.43 0.00 0.00 3.11
1639 2152 1.688197 TGAAAAGGGGCTGCAGAAAAG 59.312 47.619 20.43 0.00 0.00 2.27
1640 2153 1.786937 TGAAAAGGGGCTGCAGAAAA 58.213 45.000 20.43 0.00 0.00 2.29
1641 2154 1.786937 TTGAAAAGGGGCTGCAGAAA 58.213 45.000 20.43 0.00 0.00 2.52
1642 2155 2.014010 ATTGAAAAGGGGCTGCAGAA 57.986 45.000 20.43 0.00 0.00 3.02
1643 2156 2.014010 AATTGAAAAGGGGCTGCAGA 57.986 45.000 20.43 0.00 0.00 4.26
1644 2157 2.845363 AAATTGAAAAGGGGCTGCAG 57.155 45.000 10.11 10.11 0.00 4.41
1645 2158 2.437281 TGAAAATTGAAAAGGGGCTGCA 59.563 40.909 0.50 0.00 0.00 4.41
1646 2159 3.069289 CTGAAAATTGAAAAGGGGCTGC 58.931 45.455 0.00 0.00 0.00 5.25
1647 2160 3.071457 ACCTGAAAATTGAAAAGGGGCTG 59.929 43.478 0.00 0.00 31.98 4.85
1648 2161 3.317406 ACCTGAAAATTGAAAAGGGGCT 58.683 40.909 0.00 0.00 31.98 5.19
1649 2162 3.769739 ACCTGAAAATTGAAAAGGGGC 57.230 42.857 0.00 0.00 31.98 5.80
1650 2163 5.289083 TGAACCTGAAAATTGAAAAGGGG 57.711 39.130 0.00 0.00 31.98 4.79
1651 2164 5.070313 TCCTGAACCTGAAAATTGAAAAGGG 59.930 40.000 0.00 0.00 31.98 3.95
1652 2165 5.985530 GTCCTGAACCTGAAAATTGAAAAGG 59.014 40.000 0.00 0.00 0.00 3.11
1653 2166 6.809869 AGTCCTGAACCTGAAAATTGAAAAG 58.190 36.000 0.00 0.00 0.00 2.27
1654 2167 6.790232 AGTCCTGAACCTGAAAATTGAAAA 57.210 33.333 0.00 0.00 0.00 2.29
1655 2168 7.505585 ACATAGTCCTGAACCTGAAAATTGAAA 59.494 33.333 0.00 0.00 0.00 2.69
1656 2169 7.004086 ACATAGTCCTGAACCTGAAAATTGAA 58.996 34.615 0.00 0.00 0.00 2.69
1657 2170 6.542821 ACATAGTCCTGAACCTGAAAATTGA 58.457 36.000 0.00 0.00 0.00 2.57
1658 2171 6.824305 ACATAGTCCTGAACCTGAAAATTG 57.176 37.500 0.00 0.00 0.00 2.32
1659 2172 9.533831 AATTACATAGTCCTGAACCTGAAAATT 57.466 29.630 0.00 0.00 0.00 1.82
1660 2173 9.178758 GAATTACATAGTCCTGAACCTGAAAAT 57.821 33.333 0.00 0.00 0.00 1.82
1661 2174 8.160765 TGAATTACATAGTCCTGAACCTGAAAA 58.839 33.333 0.00 0.00 0.00 2.29
1662 2175 7.685481 TGAATTACATAGTCCTGAACCTGAAA 58.315 34.615 0.00 0.00 0.00 2.69
1663 2176 7.252612 TGAATTACATAGTCCTGAACCTGAA 57.747 36.000 0.00 0.00 0.00 3.02
1664 2177 6.867519 TGAATTACATAGTCCTGAACCTGA 57.132 37.500 0.00 0.00 0.00 3.86
1665 2178 7.050377 ACATGAATTACATAGTCCTGAACCTG 58.950 38.462 0.00 0.00 37.46 4.00
1666 2179 7.200434 ACATGAATTACATAGTCCTGAACCT 57.800 36.000 0.00 0.00 37.46 3.50
1667 2180 7.336931 ACAACATGAATTACATAGTCCTGAACC 59.663 37.037 0.00 0.00 37.46 3.62
1668 2181 8.268850 ACAACATGAATTACATAGTCCTGAAC 57.731 34.615 0.00 0.00 37.46 3.18
1669 2182 8.321353 AGACAACATGAATTACATAGTCCTGAA 58.679 33.333 0.00 0.00 37.46 3.02
1670 2183 7.851228 AGACAACATGAATTACATAGTCCTGA 58.149 34.615 0.00 0.00 37.46 3.86
1671 2184 9.770097 ATAGACAACATGAATTACATAGTCCTG 57.230 33.333 0.00 0.00 37.46 3.86
1672 2185 9.770097 CATAGACAACATGAATTACATAGTCCT 57.230 33.333 0.00 0.00 37.46 3.85
1673 2186 9.764363 TCATAGACAACATGAATTACATAGTCC 57.236 33.333 0.00 0.00 37.46 3.85
1678 2191 9.671279 TCAACTCATAGACAACATGAATTACAT 57.329 29.630 0.00 0.00 40.17 2.29
1679 2192 9.500785 TTCAACTCATAGACAACATGAATTACA 57.499 29.630 0.00 0.00 32.20 2.41
1682 2195 9.234827 TCATTCAACTCATAGACAACATGAATT 57.765 29.630 0.00 0.00 34.90 2.17
1683 2196 8.797350 TCATTCAACTCATAGACAACATGAAT 57.203 30.769 0.00 0.00 36.88 2.57
1684 2197 8.620116 TTCATTCAACTCATAGACAACATGAA 57.380 30.769 0.00 0.00 32.20 2.57
1685 2198 8.620116 TTTCATTCAACTCATAGACAACATGA 57.380 30.769 0.00 0.00 0.00 3.07
1688 2201 9.725019 ACTATTTCATTCAACTCATAGACAACA 57.275 29.630 0.00 0.00 0.00 3.33
1689 2202 9.979270 CACTATTTCATTCAACTCATAGACAAC 57.021 33.333 0.00 0.00 0.00 3.32
1690 2203 9.166173 CCACTATTTCATTCAACTCATAGACAA 57.834 33.333 0.00 0.00 0.00 3.18
1691 2204 7.280876 GCCACTATTTCATTCAACTCATAGACA 59.719 37.037 0.00 0.00 0.00 3.41
1692 2205 7.517417 CGCCACTATTTCATTCAACTCATAGAC 60.517 40.741 0.00 0.00 0.00 2.59
1693 2206 6.479990 CGCCACTATTTCATTCAACTCATAGA 59.520 38.462 0.00 0.00 0.00 1.98
1694 2207 6.653183 CGCCACTATTTCATTCAACTCATAG 58.347 40.000 0.00 0.00 0.00 2.23
1695 2208 5.007626 GCGCCACTATTTCATTCAACTCATA 59.992 40.000 0.00 0.00 0.00 2.15
1696 2209 4.201950 GCGCCACTATTTCATTCAACTCAT 60.202 41.667 0.00 0.00 0.00 2.90
1697 2210 3.126858 GCGCCACTATTTCATTCAACTCA 59.873 43.478 0.00 0.00 0.00 3.41
1698 2211 3.375299 AGCGCCACTATTTCATTCAACTC 59.625 43.478 2.29 0.00 0.00 3.01
1699 2212 3.347216 AGCGCCACTATTTCATTCAACT 58.653 40.909 2.29 0.00 0.00 3.16
1700 2213 3.764885 AGCGCCACTATTTCATTCAAC 57.235 42.857 2.29 0.00 0.00 3.18
1701 2214 3.755905 TCAAGCGCCACTATTTCATTCAA 59.244 39.130 2.29 0.00 0.00 2.69
1702 2215 3.342719 TCAAGCGCCACTATTTCATTCA 58.657 40.909 2.29 0.00 0.00 2.57
1703 2216 4.285292 CATCAAGCGCCACTATTTCATTC 58.715 43.478 2.29 0.00 0.00 2.67
1704 2217 3.067180 CCATCAAGCGCCACTATTTCATT 59.933 43.478 2.29 0.00 0.00 2.57
1705 2218 2.620115 CCATCAAGCGCCACTATTTCAT 59.380 45.455 2.29 0.00 0.00 2.57
1706 2219 2.016318 CCATCAAGCGCCACTATTTCA 58.984 47.619 2.29 0.00 0.00 2.69
1707 2220 1.268743 GCCATCAAGCGCCACTATTTC 60.269 52.381 2.29 0.00 0.00 2.17
1708 2221 0.740737 GCCATCAAGCGCCACTATTT 59.259 50.000 2.29 0.00 0.00 1.40
1709 2222 2.408333 GCCATCAAGCGCCACTATT 58.592 52.632 2.29 0.00 0.00 1.73
1710 2223 4.147701 GCCATCAAGCGCCACTAT 57.852 55.556 2.29 0.00 0.00 2.12
1718 2231 2.048603 AAGGAAGGCGCCATCAAGC 61.049 57.895 30.75 15.24 0.00 4.01
1719 2232 0.962356 ACAAGGAAGGCGCCATCAAG 60.962 55.000 30.75 21.33 0.00 3.02
1720 2233 1.074775 ACAAGGAAGGCGCCATCAA 59.925 52.632 30.75 0.00 0.00 2.57
1721 2234 1.675310 CACAAGGAAGGCGCCATCA 60.675 57.895 30.75 0.00 0.00 3.07
1722 2235 1.244019 AACACAAGGAAGGCGCCATC 61.244 55.000 31.54 27.18 0.00 3.51
1723 2236 0.037590 TAACACAAGGAAGGCGCCAT 59.962 50.000 31.54 19.26 0.00 4.40
1724 2237 0.179015 TTAACACAAGGAAGGCGCCA 60.179 50.000 31.54 0.00 0.00 5.69
1725 2238 0.955905 TTTAACACAAGGAAGGCGCC 59.044 50.000 21.89 21.89 0.00 6.53
1726 2239 2.785713 TTTTAACACAAGGAAGGCGC 57.214 45.000 0.00 0.00 0.00 6.53
1746 2259 5.887754 TCCTCCATTACTTACCAGCTTTTT 58.112 37.500 0.00 0.00 0.00 1.94
1747 2260 5.514500 TCCTCCATTACTTACCAGCTTTT 57.486 39.130 0.00 0.00 0.00 2.27
1748 2261 5.717119 ATCCTCCATTACTTACCAGCTTT 57.283 39.130 0.00 0.00 0.00 3.51
1749 2262 5.717119 AATCCTCCATTACTTACCAGCTT 57.283 39.130 0.00 0.00 0.00 3.74
1750 2263 5.440610 CAAATCCTCCATTACTTACCAGCT 58.559 41.667 0.00 0.00 0.00 4.24
1751 2264 4.580580 CCAAATCCTCCATTACTTACCAGC 59.419 45.833 0.00 0.00 0.00 4.85
1752 2265 5.133221 CCCAAATCCTCCATTACTTACCAG 58.867 45.833 0.00 0.00 0.00 4.00
1753 2266 4.079443 CCCCAAATCCTCCATTACTTACCA 60.079 45.833 0.00 0.00 0.00 3.25
1754 2267 4.470602 CCCCAAATCCTCCATTACTTACC 58.529 47.826 0.00 0.00 0.00 2.85
1755 2268 3.889538 GCCCCAAATCCTCCATTACTTAC 59.110 47.826 0.00 0.00 0.00 2.34
1756 2269 3.791545 AGCCCCAAATCCTCCATTACTTA 59.208 43.478 0.00 0.00 0.00 2.24
1757 2270 2.587307 AGCCCCAAATCCTCCATTACTT 59.413 45.455 0.00 0.00 0.00 2.24
1758 2271 2.091665 CAGCCCCAAATCCTCCATTACT 60.092 50.000 0.00 0.00 0.00 2.24
1759 2272 2.091885 TCAGCCCCAAATCCTCCATTAC 60.092 50.000 0.00 0.00 0.00 1.89
1760 2273 2.175499 CTCAGCCCCAAATCCTCCATTA 59.825 50.000 0.00 0.00 0.00 1.90
1761 2274 1.009997 TCAGCCCCAAATCCTCCATT 58.990 50.000 0.00 0.00 0.00 3.16
1762 2275 0.554792 CTCAGCCCCAAATCCTCCAT 59.445 55.000 0.00 0.00 0.00 3.41
1763 2276 2.001803 CTCAGCCCCAAATCCTCCA 58.998 57.895 0.00 0.00 0.00 3.86
1764 2277 1.454663 GCTCAGCCCCAAATCCTCC 60.455 63.158 0.00 0.00 0.00 4.30
1765 2278 1.034292 GTGCTCAGCCCCAAATCCTC 61.034 60.000 0.00 0.00 0.00 3.71
1766 2279 1.000396 GTGCTCAGCCCCAAATCCT 60.000 57.895 0.00 0.00 0.00 3.24
1767 2280 2.054453 GGTGCTCAGCCCCAAATCC 61.054 63.158 0.00 0.00 0.00 3.01
1768 2281 0.613012 AAGGTGCTCAGCCCCAAATC 60.613 55.000 0.00 0.00 0.00 2.17
1769 2282 0.704076 TAAGGTGCTCAGCCCCAAAT 59.296 50.000 0.00 0.00 0.00 2.32
1770 2283 0.704076 ATAAGGTGCTCAGCCCCAAA 59.296 50.000 0.00 0.00 0.00 3.28
1771 2284 0.704076 AATAAGGTGCTCAGCCCCAA 59.296 50.000 0.00 0.00 0.00 4.12
1772 2285 0.255890 GAATAAGGTGCTCAGCCCCA 59.744 55.000 0.00 0.00 0.00 4.96
1773 2286 0.815615 CGAATAAGGTGCTCAGCCCC 60.816 60.000 0.00 0.00 0.00 5.80
1774 2287 0.107654 ACGAATAAGGTGCTCAGCCC 60.108 55.000 0.00 0.00 0.00 5.19
1775 2288 1.739067 AACGAATAAGGTGCTCAGCC 58.261 50.000 0.00 0.00 0.00 4.85
1776 2289 3.003480 AGAAACGAATAAGGTGCTCAGC 58.997 45.455 0.00 0.00 0.00 4.26
1777 2290 4.670221 GCAAGAAACGAATAAGGTGCTCAG 60.670 45.833 0.00 0.00 0.00 3.35
1778 2291 3.188460 GCAAGAAACGAATAAGGTGCTCA 59.812 43.478 0.00 0.00 0.00 4.26
1779 2292 3.188460 TGCAAGAAACGAATAAGGTGCTC 59.812 43.478 0.00 0.00 0.00 4.26
1780 2293 3.146066 TGCAAGAAACGAATAAGGTGCT 58.854 40.909 0.00 0.00 0.00 4.40
1781 2294 3.552604 TGCAAGAAACGAATAAGGTGC 57.447 42.857 0.00 0.00 0.00 5.01
1782 2295 8.020819 TCTTTTATGCAAGAAACGAATAAGGTG 58.979 33.333 0.00 0.00 29.41 4.00
1783 2296 8.021396 GTCTTTTATGCAAGAAACGAATAAGGT 58.979 33.333 0.00 0.00 34.50 3.50
1784 2297 7.484959 GGTCTTTTATGCAAGAAACGAATAAGG 59.515 37.037 0.00 0.00 34.50 2.69
1785 2298 7.484959 GGGTCTTTTATGCAAGAAACGAATAAG 59.515 37.037 0.00 0.00 34.50 1.73
1786 2299 7.175990 AGGGTCTTTTATGCAAGAAACGAATAA 59.824 33.333 0.00 0.00 34.50 1.40
1787 2300 6.657541 AGGGTCTTTTATGCAAGAAACGAATA 59.342 34.615 0.00 0.00 34.50 1.75
1788 2301 5.476945 AGGGTCTTTTATGCAAGAAACGAAT 59.523 36.000 0.00 0.00 34.50 3.34
1789 2302 4.825085 AGGGTCTTTTATGCAAGAAACGAA 59.175 37.500 0.00 0.00 34.50 3.85
1790 2303 4.394729 AGGGTCTTTTATGCAAGAAACGA 58.605 39.130 0.00 0.00 34.50 3.85
1791 2304 4.766404 AGGGTCTTTTATGCAAGAAACG 57.234 40.909 0.00 0.00 34.50 3.60
1820 2333 8.683615 CGCCTAGGGTATTTCTTTAATCTTTTT 58.316 33.333 11.72 0.00 0.00 1.94
1821 2334 7.832685 ACGCCTAGGGTATTTCTTTAATCTTTT 59.167 33.333 11.72 0.00 0.00 2.27
1822 2335 7.344134 ACGCCTAGGGTATTTCTTTAATCTTT 58.656 34.615 11.72 0.00 0.00 2.52
1823 2336 6.896883 ACGCCTAGGGTATTTCTTTAATCTT 58.103 36.000 11.72 0.00 0.00 2.40
1824 2337 6.496144 ACGCCTAGGGTATTTCTTTAATCT 57.504 37.500 11.72 0.00 0.00 2.40
1825 2338 9.363763 GTATACGCCTAGGGTATTTCTTTAATC 57.636 37.037 21.07 0.00 40.98 1.75
1826 2339 8.873144 TGTATACGCCTAGGGTATTTCTTTAAT 58.127 33.333 21.07 5.49 40.98 1.40
1827 2340 8.248904 TGTATACGCCTAGGGTATTTCTTTAA 57.751 34.615 21.07 5.81 40.98 1.52
1828 2341 7.838079 TGTATACGCCTAGGGTATTTCTTTA 57.162 36.000 21.07 6.34 40.98 1.85
1829 2342 6.736110 TGTATACGCCTAGGGTATTTCTTT 57.264 37.500 21.07 6.33 40.98 2.52
1830 2343 6.325804 AGTTGTATACGCCTAGGGTATTTCTT 59.674 38.462 21.07 6.86 40.98 2.52
1831 2344 5.837438 AGTTGTATACGCCTAGGGTATTTCT 59.163 40.000 21.07 13.92 40.98 2.52
1832 2345 6.094193 AGTTGTATACGCCTAGGGTATTTC 57.906 41.667 21.07 16.30 40.98 2.17
1833 2346 6.779539 ACTAGTTGTATACGCCTAGGGTATTT 59.220 38.462 21.07 7.92 40.98 1.40
1834 2347 6.310149 ACTAGTTGTATACGCCTAGGGTATT 58.690 40.000 21.07 10.46 40.98 1.89
1835 2348 5.885465 ACTAGTTGTATACGCCTAGGGTAT 58.115 41.667 22.60 20.22 42.70 2.73
1836 2349 5.310409 ACTAGTTGTATACGCCTAGGGTA 57.690 43.478 22.60 11.40 35.55 3.69
1837 2350 4.176120 ACTAGTTGTATACGCCTAGGGT 57.824 45.455 22.60 9.44 32.91 4.34
1838 2351 4.457257 GGTACTAGTTGTATACGCCTAGGG 59.543 50.000 22.60 3.13 32.91 3.53
1839 2352 5.065914 TGGTACTAGTTGTATACGCCTAGG 58.934 45.833 22.60 3.67 32.91 3.02
1840 2353 6.624352 TTGGTACTAGTTGTATACGCCTAG 57.376 41.667 19.47 19.47 33.23 3.02
1841 2354 7.503566 AGATTTGGTACTAGTTGTATACGCCTA 59.496 37.037 0.00 0.30 33.23 3.93
1842 2355 5.920193 TTTGGTACTAGTTGTATACGCCT 57.080 39.130 0.00 0.00 33.23 5.52
1843 2356 6.510536 AGATTTGGTACTAGTTGTATACGCC 58.489 40.000 0.00 0.00 33.23 5.68
1844 2357 8.962111 GTTAGATTTGGTACTAGTTGTATACGC 58.038 37.037 0.00 0.00 33.23 4.42
1845 2358 9.455847 GGTTAGATTTGGTACTAGTTGTATACG 57.544 37.037 0.00 0.00 33.23 3.06
1848 2361 9.043548 ACAGGTTAGATTTGGTACTAGTTGTAT 57.956 33.333 0.00 0.00 33.23 2.29
1849 2362 8.308931 CACAGGTTAGATTTGGTACTAGTTGTA 58.691 37.037 0.00 0.00 0.00 2.41
1850 2363 7.159372 CACAGGTTAGATTTGGTACTAGTTGT 58.841 38.462 0.00 0.00 0.00 3.32
1851 2364 6.594159 CCACAGGTTAGATTTGGTACTAGTTG 59.406 42.308 0.00 0.00 0.00 3.16
1852 2365 6.708285 CCACAGGTTAGATTTGGTACTAGTT 58.292 40.000 0.00 0.00 0.00 2.24
1853 2366 5.338137 GCCACAGGTTAGATTTGGTACTAGT 60.338 44.000 0.00 0.00 0.00 2.57
1854 2367 5.116882 GCCACAGGTTAGATTTGGTACTAG 58.883 45.833 0.00 0.00 0.00 2.57
1855 2368 4.532916 TGCCACAGGTTAGATTTGGTACTA 59.467 41.667 0.00 0.00 0.00 1.82
1856 2369 3.329520 TGCCACAGGTTAGATTTGGTACT 59.670 43.478 0.00 0.00 0.00 2.73
1857 2370 3.681593 TGCCACAGGTTAGATTTGGTAC 58.318 45.455 0.00 0.00 0.00 3.34
1858 2371 3.329520 ACTGCCACAGGTTAGATTTGGTA 59.670 43.478 0.00 0.00 35.51 3.25
1859 2372 2.108250 ACTGCCACAGGTTAGATTTGGT 59.892 45.455 0.00 0.00 35.51 3.67
1860 2373 2.795329 ACTGCCACAGGTTAGATTTGG 58.205 47.619 0.00 0.00 35.51 3.28
1861 2374 4.142600 GCTTACTGCCACAGGTTAGATTTG 60.143 45.833 0.00 0.00 35.51 2.32
1862 2375 4.010349 GCTTACTGCCACAGGTTAGATTT 58.990 43.478 0.00 0.00 35.51 2.17
1863 2376 3.610911 GCTTACTGCCACAGGTTAGATT 58.389 45.455 0.00 0.00 35.51 2.40
1864 2377 3.268023 GCTTACTGCCACAGGTTAGAT 57.732 47.619 0.00 0.00 35.51 1.98
1865 2378 2.762535 GCTTACTGCCACAGGTTAGA 57.237 50.000 0.00 0.00 35.51 2.10
1876 2389 3.942130 AAATTCTGGTTGGCTTACTGC 57.058 42.857 0.00 0.00 41.94 4.40
1877 2390 5.600696 ACAAAAATTCTGGTTGGCTTACTG 58.399 37.500 0.00 0.00 0.00 2.74
1878 2391 5.221441 GGACAAAAATTCTGGTTGGCTTACT 60.221 40.000 0.00 0.00 30.63 2.24
1879 2392 4.988540 GGACAAAAATTCTGGTTGGCTTAC 59.011 41.667 0.00 0.00 30.63 2.34
1880 2393 4.651503 TGGACAAAAATTCTGGTTGGCTTA 59.348 37.500 0.00 0.00 30.63 3.09
1881 2394 3.454082 TGGACAAAAATTCTGGTTGGCTT 59.546 39.130 0.00 0.00 30.63 4.35
1882 2395 3.037549 TGGACAAAAATTCTGGTTGGCT 58.962 40.909 0.00 0.00 30.63 4.75
1883 2396 3.467374 TGGACAAAAATTCTGGTTGGC 57.533 42.857 0.00 0.00 0.00 4.52
1884 2397 6.112058 TCTTTTGGACAAAAATTCTGGTTGG 58.888 36.000 10.95 0.00 39.49 3.77
1885 2398 7.413988 GGTTCTTTTGGACAAAAATTCTGGTTG 60.414 37.037 10.95 0.00 39.49 3.77
1888 2401 6.112058 TGGTTCTTTTGGACAAAAATTCTGG 58.888 36.000 10.95 0.09 39.49 3.86
2089 2630 4.274008 TTGCAGCAGCTGGCCTCA 62.274 61.111 24.13 10.32 46.50 3.86
2162 2801 0.948141 GAGACGAGTTGCTGCTGCTT 60.948 55.000 17.00 2.48 40.48 3.91
2194 3695 4.095782 GCTAACAACACTGGAAGAACACAA 59.904 41.667 0.00 0.00 37.43 3.33
2386 3887 2.652941 AATGCCAAATACAACAGCGG 57.347 45.000 0.00 0.00 0.00 5.52
2550 4088 7.288810 AGGCACATTTGACTGAGATTTAAAA 57.711 32.000 0.00 0.00 40.90 1.52
2582 4120 7.344134 TCTGTTCTACTAGATGTTAGCAGGTA 58.656 38.462 0.00 0.00 0.00 3.08
2596 4134 5.414360 CATTGCTTGCTCTCTGTTCTACTA 58.586 41.667 0.00 0.00 0.00 1.82
2617 4173 2.125229 CGTCTCCAGCAGCAGCAT 60.125 61.111 3.17 0.00 45.49 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.