Multiple sequence alignment - TraesCS5B01G055300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G055300 chr5B 100.000 4299 0 0 1 4299 60876499 60880797 0.000000e+00 7939.0
1 TraesCS5B01G055300 chr5D 96.549 2492 84 1 960 3451 57574977 57572488 0.000000e+00 4124.0
2 TraesCS5B01G055300 chr5D 93.916 263 16 0 4037 4299 57570326 57570064 8.660000e-107 398.0
3 TraesCS5B01G055300 chr5D 94.800 250 13 0 297 546 227454862 227454613 1.450000e-104 390.0
4 TraesCS5B01G055300 chr5D 92.395 263 17 3 545 807 227454245 227453986 5.250000e-99 372.0
5 TraesCS5B01G055300 chr5D 86.744 347 21 14 3468 3791 67716471 67716127 3.160000e-96 363.0
6 TraesCS5B01G055300 chr5D 86.705 346 23 11 3468 3791 172188791 172189135 3.160000e-96 363.0
7 TraesCS5B01G055300 chr5D 90.037 271 12 8 3787 4042 57572463 57572193 1.920000e-88 337.0
8 TraesCS5B01G055300 chr5D 90.498 221 21 0 4079 4299 35659817 35659597 4.200000e-75 292.0
9 TraesCS5B01G055300 chr5D 79.714 350 37 16 3468 3791 150167857 150168198 5.600000e-54 222.0
10 TraesCS5B01G055300 chr5A 96.579 2368 79 2 802 3167 45741131 45738764 0.000000e+00 3923.0
11 TraesCS5B01G055300 chr5A 98.425 254 3 1 294 546 406492872 406493125 3.050000e-121 446.0
12 TraesCS5B01G055300 chr5A 92.642 299 15 2 3791 4082 45738493 45738195 1.430000e-114 424.0
13 TraesCS5B01G055300 chr5A 94.882 254 11 1 3198 3451 45738773 45738522 3.120000e-106 396.0
14 TraesCS5B01G055300 chr5A 87.536 345 21 8 3468 3791 172543060 172543403 3.140000e-101 379.0
15 TraesCS5B01G055300 chr5A 86.957 345 23 8 3468 3791 172481633 172481976 6.790000e-98 368.0
16 TraesCS5B01G055300 chr5A 96.000 200 8 0 545 744 406493497 406493696 4.150000e-85 326.0
17 TraesCS5B01G055300 chr5A 89.231 65 7 0 4081 4145 129549221 129549157 9.910000e-12 82.4
18 TraesCS5B01G055300 chr4B 95.720 257 11 0 545 801 661510638 661510894 8.600000e-112 414.0
19 TraesCS5B01G055300 chr4B 95.257 253 11 1 294 546 661510016 661510267 2.410000e-107 399.0
20 TraesCS5B01G055300 chr4B 92.126 127 7 2 303 427 438996849 438996724 4.420000e-40 176.0
21 TraesCS5B01G055300 chr4B 91.339 127 8 2 303 427 406831737 406831612 2.060000e-38 171.0
22 TraesCS5B01G055300 chr4B 79.923 259 23 16 3468 3704 472489502 472489753 3.440000e-36 163.0
23 TraesCS5B01G055300 chr2B 96.400 250 9 0 297 546 707635873 707636122 3.090000e-111 412.0
24 TraesCS5B01G055300 chr2B 91.188 261 11 5 545 805 707636492 707636740 1.140000e-90 344.0
25 TraesCS5B01G055300 chr2B 84.324 185 22 6 364 546 697218191 697218012 1.590000e-39 174.0
26 TraesCS5B01G055300 chr2B 83.784 185 24 5 364 546 697281349 697281169 2.060000e-38 171.0
27 TraesCS5B01G055300 chr2B 80.930 215 14 13 3449 3638 439218800 439218588 1.250000e-30 145.0
28 TraesCS5B01G055300 chr2B 91.071 56 5 0 4167 4222 38700363 38700308 4.610000e-10 76.8
29 TraesCS5B01G055300 chr2D 87.966 349 22 10 3468 3797 442138504 442138851 1.120000e-105 394.0
30 TraesCS5B01G055300 chr2D 86.667 345 24 11 3468 3791 312503871 312504214 3.160000e-96 363.0
31 TraesCS5B01G055300 chr2D 80.737 353 34 15 3468 3794 584108966 584108622 1.190000e-60 244.0
32 TraesCS5B01G055300 chr2D 91.071 56 5 0 4167 4222 620310212 620310157 4.610000e-10 76.8
33 TraesCS5B01G055300 chr6D 87.536 345 21 8 3469 3792 153360698 153360355 3.140000e-101 379.0
34 TraesCS5B01G055300 chr6D 89.552 67 4 3 4079 4145 143976500 143976563 9.910000e-12 82.4
35 TraesCS5B01G055300 chr3D 91.450 269 20 3 3526 3791 177060339 177060071 2.440000e-97 366.0
36 TraesCS5B01G055300 chr4D 91.418 268 20 3 3526 3791 427875158 427874892 8.790000e-97 364.0
37 TraesCS5B01G055300 chr4D 86.667 345 24 13 3468 3791 407569433 407569090 3.160000e-96 363.0
38 TraesCS5B01G055300 chr4D 91.892 37 3 0 19 55 64371460 64371424 8.000000e-03 52.8
39 TraesCS5B01G055300 chr3B 92.126 254 17 2 295 546 815867428 815867680 5.290000e-94 355.0
40 TraesCS5B01G055300 chr3B 86.076 79 10 1 4078 4156 557616052 557616129 2.750000e-12 84.2
41 TraesCS5B01G055300 chr3B 86.957 69 7 2 4078 4145 417505874 417505807 4.610000e-10 76.8
42 TraesCS5B01G055300 chr3B 94.444 36 2 0 11 46 683011597 683011632 6.010000e-04 56.5
43 TraesCS5B01G055300 chr3B 100.000 28 0 0 19 46 606284638 606284665 8.000000e-03 52.8
44 TraesCS5B01G055300 chr7D 84.348 345 28 16 3468 3791 437126804 437126465 8.970000e-82 315.0
45 TraesCS5B01G055300 chr7D 78.125 160 21 7 4069 4228 376552373 376552518 5.920000e-14 89.8
46 TraesCS5B01G055300 chr7D 93.878 49 3 0 4085 4133 109451373 109451325 1.660000e-09 75.0
47 TraesCS5B01G055300 chr7D 94.444 36 2 0 11 46 505151779 505151814 6.010000e-04 56.5
48 TraesCS5B01G055300 chr6B 80.055 361 37 19 3467 3801 247730620 247730971 7.190000e-58 235.0
49 TraesCS5B01G055300 chr6B 93.805 113 6 1 689 801 1127492 1127603 7.390000e-38 169.0
50 TraesCS5B01G055300 chr6B 91.753 97 6 2 711 806 1127361 1127456 2.700000e-27 134.0
51 TraesCS5B01G055300 chr7B 80.286 350 35 18 3468 3791 228783858 228783517 2.580000e-57 233.0
52 TraesCS5B01G055300 chr1D 78.977 352 41 15 3464 3791 374216387 374216729 4.360000e-50 209.0
53 TraesCS5B01G055300 chr1D 88.060 67 5 3 4079 4145 90628478 90628415 4.610000e-10 76.8
54 TraesCS5B01G055300 chrUn 79.675 246 38 6 558 803 23680798 23680565 2.660000e-37 167.0
55 TraesCS5B01G055300 chr1A 80.537 149 21 6 4081 4228 85312637 85312496 1.630000e-19 108.0
56 TraesCS5B01G055300 chr6A 95.455 44 2 0 4079 4122 580272130 580272087 2.140000e-08 71.3
57 TraesCS5B01G055300 chr7A 86.154 65 6 3 4081 4145 14843129 14843068 2.770000e-07 67.6
58 TraesCS5B01G055300 chr3A 93.023 43 3 0 9 51 514346261 514346219 3.590000e-06 63.9
59 TraesCS5B01G055300 chr4A 91.111 45 4 0 11 55 577119484 577119440 1.290000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G055300 chr5B 60876499 60880797 4298 False 7939.000000 7939 100.000000 1 4299 1 chr5B.!!$F1 4298
1 TraesCS5B01G055300 chr5D 57570064 57574977 4913 True 1619.666667 4124 93.500667 960 4299 3 chr5D.!!$R3 3339
2 TraesCS5B01G055300 chr5D 227453986 227454862 876 True 381.000000 390 93.597500 297 807 2 chr5D.!!$R4 510
3 TraesCS5B01G055300 chr5A 45738195 45741131 2936 True 1581.000000 3923 94.701000 802 4082 3 chr5A.!!$R2 3280
4 TraesCS5B01G055300 chr5A 406492872 406493696 824 False 386.000000 446 97.212500 294 744 2 chr5A.!!$F3 450
5 TraesCS5B01G055300 chr4B 661510016 661510894 878 False 406.500000 414 95.488500 294 801 2 chr4B.!!$F2 507
6 TraesCS5B01G055300 chr2B 707635873 707636740 867 False 378.000000 412 93.794000 297 805 2 chr2B.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.038159 GTCTGTTCCAGTCCTGTCCG 60.038 60.0 0.00 0.0 32.61 4.79 F
242 243 0.105964 CAGTCACGGAGGTGGTCAAA 59.894 55.0 0.00 0.0 44.50 2.69 F
261 262 0.108329 AATCGACGTGGATGTGTCCC 60.108 55.0 14.14 0.0 44.41 4.46 F
895 1275 0.179073 ATCAGATCGGTTGGGCTTCG 60.179 55.0 0.00 0.0 0.00 3.79 F
2099 2480 0.247460 CACTTGAGGTCCGAGATGCA 59.753 55.0 0.00 0.0 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2436 0.955428 AAGATGTGGCGTGCGTCATT 60.955 50.000 1.33 0.0 30.18 2.57 R
2231 2612 2.125952 GCCTTGCGCATTTGACCC 60.126 61.111 12.75 0.0 37.47 4.46 R
2253 2634 7.451255 CCTCTGACTCATCTTCCTGAATATACT 59.549 40.741 0.00 0.0 0.00 2.12 R
2564 2945 0.249784 CCTGACCTGCCATCTCATCG 60.250 60.000 0.00 0.0 0.00 3.84 R
3607 3999 0.038166 GAGGGATGTGGCTGGTTTCA 59.962 55.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.435938 TTCCCATGTTCGAGCCGC 60.436 61.111 0.00 0.00 0.00 6.53
18 19 3.969250 TTCCCATGTTCGAGCCGCC 62.969 63.158 0.00 0.00 0.00 6.13
35 36 4.760047 CGCCGTCCTCCACCCTTG 62.760 72.222 0.00 0.00 0.00 3.61
37 38 3.322466 CCGTCCTCCACCCTTGCT 61.322 66.667 0.00 0.00 0.00 3.91
38 39 2.266055 CGTCCTCCACCCTTGCTC 59.734 66.667 0.00 0.00 0.00 4.26
39 40 2.671682 GTCCTCCACCCTTGCTCC 59.328 66.667 0.00 0.00 0.00 4.70
40 41 2.610859 TCCTCCACCCTTGCTCCC 60.611 66.667 0.00 0.00 0.00 4.30
41 42 3.732849 CCTCCACCCTTGCTCCCC 61.733 72.222 0.00 0.00 0.00 4.81
42 43 2.935481 CTCCACCCTTGCTCCCCA 60.935 66.667 0.00 0.00 0.00 4.96
43 44 2.204291 TCCACCCTTGCTCCCCAT 60.204 61.111 0.00 0.00 0.00 4.00
44 45 2.276309 CTCCACCCTTGCTCCCCATC 62.276 65.000 0.00 0.00 0.00 3.51
45 46 2.276740 CACCCTTGCTCCCCATCC 59.723 66.667 0.00 0.00 0.00 3.51
46 47 2.204291 ACCCTTGCTCCCCATCCA 60.204 61.111 0.00 0.00 0.00 3.41
47 48 2.276740 CCCTTGCTCCCCATCCAC 59.723 66.667 0.00 0.00 0.00 4.02
48 49 2.124570 CCTTGCTCCCCATCCACG 60.125 66.667 0.00 0.00 0.00 4.94
49 50 2.825836 CTTGCTCCCCATCCACGC 60.826 66.667 0.00 0.00 0.00 5.34
50 51 4.424711 TTGCTCCCCATCCACGCC 62.425 66.667 0.00 0.00 0.00 5.68
70 71 4.246206 CGTAGATGCCGTCGCCGA 62.246 66.667 0.00 0.00 35.63 5.54
71 72 2.353607 GTAGATGCCGTCGCCGAG 60.354 66.667 0.00 0.00 35.63 4.63
72 73 2.827190 TAGATGCCGTCGCCGAGT 60.827 61.111 0.00 0.00 35.63 4.18
73 74 1.524393 TAGATGCCGTCGCCGAGTA 60.524 57.895 0.00 0.00 35.63 2.59
74 75 1.779025 TAGATGCCGTCGCCGAGTAC 61.779 60.000 0.00 0.00 35.63 2.73
75 76 3.122250 GATGCCGTCGCCGAGTACT 62.122 63.158 0.00 0.00 35.63 2.73
76 77 2.985486 GATGCCGTCGCCGAGTACTC 62.985 65.000 13.18 13.18 35.63 2.59
77 78 3.507009 GCCGTCGCCGAGTACTCT 61.507 66.667 20.34 0.00 35.63 3.24
78 79 3.048941 GCCGTCGCCGAGTACTCTT 62.049 63.158 20.34 0.00 35.63 2.85
79 80 1.062206 CCGTCGCCGAGTACTCTTC 59.938 63.158 20.34 10.60 35.63 2.87
80 81 1.296722 CGTCGCCGAGTACTCTTCG 60.297 63.158 20.34 20.49 35.63 3.79
81 82 1.792941 GTCGCCGAGTACTCTTCGT 59.207 57.895 20.34 0.00 0.00 3.85
82 83 0.247616 GTCGCCGAGTACTCTTCGTC 60.248 60.000 20.34 15.52 0.00 4.20
83 84 1.062206 CGCCGAGTACTCTTCGTCC 59.938 63.158 20.34 1.91 0.00 4.79
84 85 1.432657 GCCGAGTACTCTTCGTCCC 59.567 63.158 20.34 0.00 0.00 4.46
85 86 2.002509 GCCGAGTACTCTTCGTCCCC 62.003 65.000 20.34 0.00 0.00 4.81
86 87 1.382692 CCGAGTACTCTTCGTCCCCC 61.383 65.000 20.34 0.00 0.00 5.40
87 88 0.679002 CGAGTACTCTTCGTCCCCCA 60.679 60.000 20.34 0.00 0.00 4.96
88 89 0.816373 GAGTACTCTTCGTCCCCCAC 59.184 60.000 15.91 0.00 0.00 4.61
89 90 0.614134 AGTACTCTTCGTCCCCCACC 60.614 60.000 0.00 0.00 0.00 4.61
90 91 1.679977 TACTCTTCGTCCCCCACCG 60.680 63.158 0.00 0.00 0.00 4.94
91 92 4.452733 CTCTTCGTCCCCCACCGC 62.453 72.222 0.00 0.00 0.00 5.68
112 113 3.664495 CATGGATGATGCCTCGGC 58.336 61.111 0.00 0.00 42.35 5.54
113 114 2.031616 ATGGATGATGCCTCGGCG 59.968 61.111 0.00 0.00 45.51 6.46
114 115 3.541950 ATGGATGATGCCTCGGCGG 62.542 63.158 7.21 0.00 45.51 6.13
115 116 3.928779 GGATGATGCCTCGGCGGA 61.929 66.667 7.21 0.00 45.51 5.54
116 117 2.356793 GATGATGCCTCGGCGGAG 60.357 66.667 14.06 14.06 45.51 4.63
117 118 3.157217 GATGATGCCTCGGCGGAGT 62.157 63.158 18.79 1.70 45.51 3.85
118 119 3.157217 ATGATGCCTCGGCGGAGTC 62.157 63.158 18.79 7.93 45.51 3.36
119 120 3.532155 GATGCCTCGGCGGAGTCT 61.532 66.667 18.79 4.19 45.51 3.24
120 121 3.781770 GATGCCTCGGCGGAGTCTG 62.782 68.421 18.79 6.16 45.51 3.51
122 123 4.070552 GCCTCGGCGGAGTCTGTT 62.071 66.667 18.79 0.00 38.70 3.16
123 124 2.182030 CCTCGGCGGAGTCTGTTC 59.818 66.667 18.79 0.00 38.70 3.18
124 125 2.182030 CTCGGCGGAGTCTGTTCC 59.818 66.667 12.89 0.00 35.48 3.62
125 126 2.599281 TCGGCGGAGTCTGTTCCA 60.599 61.111 7.21 0.00 37.05 3.53
126 127 2.125912 CGGCGGAGTCTGTTCCAG 60.126 66.667 0.00 0.00 37.05 3.86
127 128 2.932234 CGGCGGAGTCTGTTCCAGT 61.932 63.158 0.00 0.00 37.05 4.00
128 129 1.079750 GGCGGAGTCTGTTCCAGTC 60.080 63.158 0.00 0.00 37.05 3.51
129 130 1.079750 GCGGAGTCTGTTCCAGTCC 60.080 63.158 0.00 0.00 37.05 3.85
130 131 1.536943 GCGGAGTCTGTTCCAGTCCT 61.537 60.000 0.00 0.00 37.05 3.85
131 132 0.244994 CGGAGTCTGTTCCAGTCCTG 59.755 60.000 0.00 0.00 37.05 3.86
132 133 1.343069 GGAGTCTGTTCCAGTCCTGT 58.657 55.000 0.00 0.00 37.20 4.00
133 134 1.273886 GGAGTCTGTTCCAGTCCTGTC 59.726 57.143 0.00 0.00 37.20 3.51
134 135 1.273886 GAGTCTGTTCCAGTCCTGTCC 59.726 57.143 0.00 0.00 32.61 4.02
135 136 0.038159 GTCTGTTCCAGTCCTGTCCG 60.038 60.000 0.00 0.00 32.61 4.79
136 137 0.469331 TCTGTTCCAGTCCTGTCCGT 60.469 55.000 0.00 0.00 32.61 4.69
137 138 0.319900 CTGTTCCAGTCCTGTCCGTG 60.320 60.000 0.00 0.00 0.00 4.94
138 139 1.004918 GTTCCAGTCCTGTCCGTGG 60.005 63.158 0.00 0.00 0.00 4.94
139 140 2.879233 TTCCAGTCCTGTCCGTGGC 61.879 63.158 0.00 0.00 0.00 5.01
140 141 3.625897 CCAGTCCTGTCCGTGGCA 61.626 66.667 0.00 0.00 0.00 4.92
141 142 2.047844 CAGTCCTGTCCGTGGCAG 60.048 66.667 0.00 0.00 0.00 4.85
142 143 4.008933 AGTCCTGTCCGTGGCAGC 62.009 66.667 0.00 0.00 32.93 5.25
160 161 4.728409 CAGCTGCATGGTGGAGAA 57.272 55.556 0.00 0.00 38.14 2.87
161 162 3.186345 CAGCTGCATGGTGGAGAAT 57.814 52.632 0.00 0.00 38.14 2.40
162 163 0.738975 CAGCTGCATGGTGGAGAATG 59.261 55.000 0.00 0.00 38.14 2.67
163 164 0.330604 AGCTGCATGGTGGAGAATGT 59.669 50.000 1.02 0.00 38.14 2.71
164 165 0.737219 GCTGCATGGTGGAGAATGTC 59.263 55.000 2.50 0.00 38.14 3.06
165 166 1.012086 CTGCATGGTGGAGAATGTCG 58.988 55.000 0.00 0.00 38.14 4.35
166 167 1.026182 TGCATGGTGGAGAATGTCGC 61.026 55.000 0.00 0.00 0.00 5.19
167 168 1.718757 GCATGGTGGAGAATGTCGCC 61.719 60.000 0.00 0.00 36.83 5.54
168 169 1.097547 CATGGTGGAGAATGTCGCCC 61.098 60.000 0.00 0.00 35.30 6.13
169 170 2.124695 GGTGGAGAATGTCGCCCC 60.125 66.667 0.00 0.00 35.30 5.80
170 171 2.511600 GTGGAGAATGTCGCCCCG 60.512 66.667 0.00 0.00 35.30 5.73
171 172 2.682136 TGGAGAATGTCGCCCCGA 60.682 61.111 0.00 0.00 35.30 5.14
172 173 2.107141 GGAGAATGTCGCCCCGAG 59.893 66.667 0.00 0.00 36.23 4.63
173 174 2.107141 GAGAATGTCGCCCCGAGG 59.893 66.667 0.00 0.00 36.23 4.63
206 207 4.850822 CAGCACGAGCAGGATGAT 57.149 55.556 7.77 0.00 45.49 2.45
207 208 2.308344 CAGCACGAGCAGGATGATG 58.692 57.895 7.77 0.00 45.49 3.07
208 209 1.523258 AGCACGAGCAGGATGATGC 60.523 57.895 7.77 0.00 46.88 3.91
214 215 2.896854 GCAGGATGATGCGGCGAA 60.897 61.111 12.98 0.00 39.69 4.70
215 216 2.890109 GCAGGATGATGCGGCGAAG 61.890 63.158 12.98 0.00 39.69 3.79
216 217 1.227350 CAGGATGATGCGGCGAAGA 60.227 57.895 12.98 0.00 39.69 2.87
217 218 0.811219 CAGGATGATGCGGCGAAGAA 60.811 55.000 12.98 0.00 39.69 2.52
218 219 0.107703 AGGATGATGCGGCGAAGAAA 60.108 50.000 12.98 0.00 0.00 2.52
219 220 0.305922 GGATGATGCGGCGAAGAAAG 59.694 55.000 12.98 0.00 0.00 2.62
220 221 1.009829 GATGATGCGGCGAAGAAAGT 58.990 50.000 12.98 0.00 0.00 2.66
221 222 1.398390 GATGATGCGGCGAAGAAAGTT 59.602 47.619 12.98 0.00 0.00 2.66
222 223 0.516877 TGATGCGGCGAAGAAAGTTG 59.483 50.000 12.98 0.00 0.00 3.16
223 224 0.794605 GATGCGGCGAAGAAAGTTGC 60.795 55.000 12.98 0.00 0.00 4.17
224 225 1.514678 ATGCGGCGAAGAAAGTTGCA 61.515 50.000 12.98 0.00 35.10 4.08
225 226 1.441016 GCGGCGAAGAAAGTTGCAG 60.441 57.895 12.98 0.00 0.00 4.41
226 227 1.941812 CGGCGAAGAAAGTTGCAGT 59.058 52.632 0.00 0.00 0.00 4.40
227 228 0.110644 CGGCGAAGAAAGTTGCAGTC 60.111 55.000 0.00 0.00 0.00 3.51
228 229 0.944386 GGCGAAGAAAGTTGCAGTCA 59.056 50.000 0.00 0.00 0.00 3.41
229 230 1.334149 GGCGAAGAAAGTTGCAGTCAC 60.334 52.381 0.00 0.00 0.00 3.67
230 231 1.657538 GCGAAGAAAGTTGCAGTCACG 60.658 52.381 0.00 0.00 0.00 4.35
231 232 1.070577 CGAAGAAAGTTGCAGTCACGG 60.071 52.381 0.00 0.00 0.00 4.94
232 233 2.210116 GAAGAAAGTTGCAGTCACGGA 58.790 47.619 0.00 0.00 0.00 4.69
233 234 1.871080 AGAAAGTTGCAGTCACGGAG 58.129 50.000 0.00 0.00 0.00 4.63
234 235 0.868406 GAAAGTTGCAGTCACGGAGG 59.132 55.000 0.00 0.00 0.00 4.30
235 236 0.180406 AAAGTTGCAGTCACGGAGGT 59.820 50.000 0.00 0.00 0.00 3.85
236 237 0.532862 AAGTTGCAGTCACGGAGGTG 60.533 55.000 0.00 0.00 45.78 4.00
237 238 1.961277 GTTGCAGTCACGGAGGTGG 60.961 63.158 0.00 0.00 44.50 4.61
238 239 2.439960 TTGCAGTCACGGAGGTGGT 61.440 57.895 0.00 0.00 44.50 4.16
239 240 2.048127 GCAGTCACGGAGGTGGTC 60.048 66.667 0.00 0.00 44.50 4.02
240 241 2.867855 GCAGTCACGGAGGTGGTCA 61.868 63.158 0.00 0.00 44.50 4.02
241 242 1.745890 CAGTCACGGAGGTGGTCAA 59.254 57.895 0.00 0.00 44.50 3.18
242 243 0.105964 CAGTCACGGAGGTGGTCAAA 59.894 55.000 0.00 0.00 44.50 2.69
243 244 0.834612 AGTCACGGAGGTGGTCAAAA 59.165 50.000 0.00 0.00 44.50 2.44
244 245 1.420138 AGTCACGGAGGTGGTCAAAAT 59.580 47.619 0.00 0.00 44.50 1.82
245 246 1.804748 GTCACGGAGGTGGTCAAAATC 59.195 52.381 0.00 0.00 44.50 2.17
246 247 0.796312 CACGGAGGTGGTCAAAATCG 59.204 55.000 0.00 0.00 40.58 3.34
247 248 0.682852 ACGGAGGTGGTCAAAATCGA 59.317 50.000 0.00 0.00 0.00 3.59
248 249 1.076332 CGGAGGTGGTCAAAATCGAC 58.924 55.000 0.00 0.00 35.03 4.20
249 250 1.076332 GGAGGTGGTCAAAATCGACG 58.924 55.000 0.00 0.00 36.73 5.12
250 251 1.607251 GGAGGTGGTCAAAATCGACGT 60.607 52.381 0.00 0.00 36.73 4.34
251 252 1.459592 GAGGTGGTCAAAATCGACGTG 59.540 52.381 0.00 0.00 36.73 4.49
252 253 0.515564 GGTGGTCAAAATCGACGTGG 59.484 55.000 0.00 0.00 36.73 4.94
253 254 1.504359 GTGGTCAAAATCGACGTGGA 58.496 50.000 1.72 1.72 36.73 4.02
254 255 2.073816 GTGGTCAAAATCGACGTGGAT 58.926 47.619 7.30 7.30 36.73 3.41
255 256 2.073056 TGGTCAAAATCGACGTGGATG 58.927 47.619 14.14 3.59 36.73 3.51
256 257 2.073816 GGTCAAAATCGACGTGGATGT 58.926 47.619 14.14 5.53 36.73 3.06
257 258 2.159707 GGTCAAAATCGACGTGGATGTG 60.160 50.000 14.14 14.42 36.73 3.21
258 259 2.478894 GTCAAAATCGACGTGGATGTGT 59.521 45.455 14.14 0.07 0.00 3.72
259 260 2.734606 TCAAAATCGACGTGGATGTGTC 59.265 45.455 14.14 0.00 0.00 3.67
260 261 1.722011 AAATCGACGTGGATGTGTCC 58.278 50.000 14.14 0.00 45.31 4.02
261 262 0.108329 AATCGACGTGGATGTGTCCC 60.108 55.000 14.14 0.00 44.41 4.46
262 263 1.956629 ATCGACGTGGATGTGTCCCC 61.957 60.000 12.62 0.00 44.41 4.81
263 264 2.646175 CGACGTGGATGTGTCCCCT 61.646 63.158 0.00 0.00 44.41 4.79
264 265 1.218316 GACGTGGATGTGTCCCCTC 59.782 63.158 0.00 0.00 44.41 4.30
265 266 2.240162 GACGTGGATGTGTCCCCTCC 62.240 65.000 0.00 0.00 44.41 4.30
266 267 2.584608 GTGGATGTGTCCCCTCCG 59.415 66.667 0.00 0.00 44.41 4.63
267 268 2.121832 TGGATGTGTCCCCTCCGT 59.878 61.111 0.00 0.00 44.41 4.69
268 269 1.537889 TGGATGTGTCCCCTCCGTT 60.538 57.895 0.00 0.00 44.41 4.44
269 270 1.078426 GGATGTGTCCCCTCCGTTG 60.078 63.158 0.00 0.00 38.69 4.10
270 271 1.745489 GATGTGTCCCCTCCGTTGC 60.745 63.158 0.00 0.00 0.00 4.17
271 272 3.605749 ATGTGTCCCCTCCGTTGCG 62.606 63.158 0.00 0.00 0.00 4.85
427 428 7.914465 TGTTTGCTTATTCAACAAATGTTTCC 58.086 30.769 0.00 0.00 35.87 3.13
655 1035 0.826256 TGCGCCGTCCTCTATACCAT 60.826 55.000 4.18 0.00 0.00 3.55
686 1066 3.074412 GTTTGATTCACATCTGGGACGT 58.926 45.455 0.00 0.00 0.00 4.34
750 1130 1.302511 CCAAGTCACTTGTCCCCCG 60.303 63.158 16.50 0.00 39.58 5.73
830 1210 4.876107 TCCTCCAATGAATCTAAGCGTTTC 59.124 41.667 0.00 0.00 0.00 2.78
845 1225 2.604614 GCGTTTCACTTGGGCTGTAAAG 60.605 50.000 0.00 0.00 0.00 1.85
852 1232 4.020928 TCACTTGGGCTGTAAAGTCGATTA 60.021 41.667 0.00 0.00 34.41 1.75
856 1236 6.433093 ACTTGGGCTGTAAAGTCGATTAAAAT 59.567 34.615 0.00 0.00 30.87 1.82
876 1256 5.736951 AATTTTGCACAGGCCTATTAACA 57.263 34.783 3.98 0.00 40.13 2.41
895 1275 0.179073 ATCAGATCGGTTGGGCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
907 1287 4.698780 GGTTGGGCTTCGATAGTTTAAGTT 59.301 41.667 0.00 0.00 37.40 2.66
984 1365 0.397941 CCCTTCCTCAGTGCAGTCAA 59.602 55.000 0.00 0.00 0.00 3.18
995 1376 0.950555 TGCAGTCAATCGCACACCTC 60.951 55.000 0.00 0.00 31.95 3.85
1262 1643 4.215742 CCCCGCCGCAATCTCGTA 62.216 66.667 0.00 0.00 0.00 3.43
1422 1803 1.949847 GCTTGCTAGGGAGACGCTCA 61.950 60.000 8.71 0.00 31.08 4.26
1433 1814 2.395654 GAGACGCTCAATCGAATACCC 58.604 52.381 0.00 0.00 0.00 3.69
1559 1940 5.337009 GGACATAGTTTCTTGGAACTCGGTA 60.337 44.000 0.00 0.00 40.24 4.02
1568 1949 1.153881 GAACTCGGTACTGGTCGGC 60.154 63.158 0.85 0.00 0.00 5.54
1589 1970 3.614870 GCTTGACCCGCAATGAGAAAATT 60.615 43.478 0.00 0.00 35.59 1.82
1704 2085 0.393673 TGCGGCTGCTGGCTTATTTA 60.394 50.000 20.27 0.00 43.34 1.40
1715 2096 5.045578 TGCTGGCTTATTTAAGAGAGTTCCT 60.046 40.000 1.52 0.00 35.33 3.36
1766 2147 1.065600 CAATGGTTATTGCCGGGCG 59.934 57.895 15.40 0.00 37.47 6.13
1851 2232 2.418368 TGTGATGCTTGGTGGGTATC 57.582 50.000 0.00 0.00 0.00 2.24
1874 2255 0.810648 GGCTTTCGCACATGGATGAA 59.189 50.000 0.00 0.00 38.10 2.57
1890 2271 7.230108 ACATGGATGAAGCCTATAGATTGTTTG 59.770 37.037 0.00 0.00 0.00 2.93
1892 2273 5.334414 GGATGAAGCCTATAGATTGTTTGCG 60.334 44.000 0.00 0.00 0.00 4.85
2000 2381 3.243501 TGCTGAACAAGATGCCTTTTGAC 60.244 43.478 0.00 0.00 0.00 3.18
2012 2393 2.891112 CCTTTTGACAGTTTTGCAGCA 58.109 42.857 0.00 0.00 0.00 4.41
2055 2436 3.840124 ATCTGCAGAGCAAGATGATCA 57.160 42.857 22.96 0.00 38.41 2.92
2099 2480 0.247460 CACTTGAGGTCCGAGATGCA 59.753 55.000 0.00 0.00 0.00 3.96
2162 2543 1.675641 GCTTGACGAGGCCATGGTT 60.676 57.895 14.67 1.53 0.00 3.67
2264 2645 4.449068 CGCAAGGCAGTAAGTATATTCAGG 59.551 45.833 0.00 0.00 0.00 3.86
2272 2653 7.816995 GGCAGTAAGTATATTCAGGAAGATGAG 59.183 40.741 0.00 0.00 0.00 2.90
2511 2892 2.014010 TTCCTTTGCTGGAAATGCCT 57.986 45.000 0.00 0.00 42.51 4.75
2516 2897 3.518590 CTTTGCTGGAAATGCCTTGATC 58.481 45.455 0.00 0.00 37.63 2.92
2519 2900 1.680207 GCTGGAAATGCCTTGATCTCC 59.320 52.381 0.00 0.00 37.63 3.71
2564 2945 7.043059 CGGATCTTAGAAGCAAGACAAGTATTC 60.043 40.741 0.00 0.00 37.37 1.75
2603 2984 3.833650 AGGACATTGTTTCATGGAATGCA 59.166 39.130 0.00 0.00 46.21 3.96
2677 3058 2.026356 TCCGAGAAATGGAAGCCAATGA 60.026 45.455 0.00 0.00 36.95 2.57
2834 3215 1.212688 TGCATGGTGGATCTACTTGGG 59.787 52.381 9.27 0.00 0.00 4.12
2847 3228 0.043940 ACTTGGGAGAGCTGGGAGAT 59.956 55.000 0.00 0.00 0.00 2.75
3211 3592 3.306641 GCTGTCACCTGAATCAGACTCTT 60.307 47.826 12.53 0.00 32.44 2.85
3212 3593 4.244066 CTGTCACCTGAATCAGACTCTTG 58.756 47.826 12.53 1.18 32.44 3.02
3239 3620 1.955495 TAAATCCTGGCTGAGCGCGA 61.955 55.000 12.10 0.00 40.44 5.87
3253 3634 1.980951 GCGCGAGAATTGTCATGCCA 61.981 55.000 12.10 0.00 0.00 4.92
3468 3860 1.191535 TGCAGCAGTCGGTACCTAAT 58.808 50.000 10.90 0.00 0.00 1.73
3469 3861 1.136305 TGCAGCAGTCGGTACCTAATC 59.864 52.381 10.90 0.00 0.00 1.75
3470 3862 1.409427 GCAGCAGTCGGTACCTAATCT 59.591 52.381 10.90 0.00 0.00 2.40
3471 3863 2.544069 GCAGCAGTCGGTACCTAATCTC 60.544 54.545 10.90 0.00 0.00 2.75
3472 3864 2.952978 CAGCAGTCGGTACCTAATCTCT 59.047 50.000 10.90 0.00 0.00 3.10
3473 3865 4.135306 CAGCAGTCGGTACCTAATCTCTA 58.865 47.826 10.90 0.00 0.00 2.43
3474 3866 4.023878 CAGCAGTCGGTACCTAATCTCTAC 60.024 50.000 10.90 0.00 0.00 2.59
3475 3867 4.136051 GCAGTCGGTACCTAATCTCTACT 58.864 47.826 10.90 0.00 0.00 2.57
3476 3868 4.213906 GCAGTCGGTACCTAATCTCTACTC 59.786 50.000 10.90 0.00 0.00 2.59
3477 3869 4.756135 CAGTCGGTACCTAATCTCTACTCC 59.244 50.000 10.90 0.00 0.00 3.85
3478 3870 4.659835 AGTCGGTACCTAATCTCTACTCCT 59.340 45.833 10.90 0.00 0.00 3.69
3479 3871 5.843421 AGTCGGTACCTAATCTCTACTCCTA 59.157 44.000 10.90 0.00 0.00 2.94
3480 3872 6.501453 AGTCGGTACCTAATCTCTACTCCTAT 59.499 42.308 10.90 0.00 0.00 2.57
3481 3873 7.677745 AGTCGGTACCTAATCTCTACTCCTATA 59.322 40.741 10.90 0.00 0.00 1.31
3482 3874 8.317679 GTCGGTACCTAATCTCTACTCCTATAA 58.682 40.741 10.90 0.00 0.00 0.98
3483 3875 8.884323 TCGGTACCTAATCTCTACTCCTATAAA 58.116 37.037 10.90 0.00 0.00 1.40
3484 3876 9.512588 CGGTACCTAATCTCTACTCCTATAAAA 57.487 37.037 10.90 0.00 0.00 1.52
3492 3884 9.930158 AATCTCTACTCCTATAAAAGACTCAGT 57.070 33.333 0.00 0.00 0.00 3.41
3493 3885 9.930158 ATCTCTACTCCTATAAAAGACTCAGTT 57.070 33.333 0.00 0.00 0.00 3.16
3494 3886 9.179909 TCTCTACTCCTATAAAAGACTCAGTTG 57.820 37.037 0.00 0.00 0.00 3.16
3495 3887 8.294954 TCTACTCCTATAAAAGACTCAGTTGG 57.705 38.462 0.00 0.00 0.00 3.77
3496 3888 6.936968 ACTCCTATAAAAGACTCAGTTGGT 57.063 37.500 0.00 0.00 0.00 3.67
3497 3889 6.702329 ACTCCTATAAAAGACTCAGTTGGTG 58.298 40.000 0.00 0.00 0.00 4.17
3498 3890 6.497259 ACTCCTATAAAAGACTCAGTTGGTGA 59.503 38.462 0.00 0.00 0.00 4.02
3499 3891 6.698380 TCCTATAAAAGACTCAGTTGGTGAC 58.302 40.000 0.00 0.00 0.00 3.67
3500 3892 5.577164 CCTATAAAAGACTCAGTTGGTGACG 59.423 44.000 0.00 0.00 0.00 4.35
3501 3893 3.536956 AAAAGACTCAGTTGGTGACGA 57.463 42.857 0.00 0.00 0.00 4.20
3502 3894 2.510768 AAGACTCAGTTGGTGACGAC 57.489 50.000 0.00 0.00 45.77 4.34
3508 3900 3.315796 GTTGGTGACGACGGTGTG 58.684 61.111 0.00 0.00 34.37 3.82
3509 3901 1.519898 GTTGGTGACGACGGTGTGT 60.520 57.895 0.00 0.00 34.37 3.72
3510 3902 1.227031 TTGGTGACGACGGTGTGTC 60.227 57.895 0.00 3.77 44.53 3.67
3511 3903 2.355481 GGTGACGACGGTGTGTCC 60.355 66.667 0.00 0.96 45.23 4.02
3520 3912 2.654877 GGTGTGTCCGTCATCCGT 59.345 61.111 0.00 0.00 33.66 4.69
3521 3913 1.445582 GGTGTGTCCGTCATCCGTC 60.446 63.158 0.00 0.00 33.66 4.79
3522 3914 1.287815 GTGTGTCCGTCATCCGTCA 59.712 57.895 0.00 0.00 33.66 4.35
3523 3915 0.108804 GTGTGTCCGTCATCCGTCAT 60.109 55.000 0.00 0.00 33.66 3.06
3524 3916 0.606096 TGTGTCCGTCATCCGTCATT 59.394 50.000 0.00 0.00 33.66 2.57
3525 3917 1.001520 TGTGTCCGTCATCCGTCATTT 59.998 47.619 0.00 0.00 33.66 2.32
3526 3918 1.659098 GTGTCCGTCATCCGTCATTTC 59.341 52.381 0.00 0.00 33.66 2.17
3527 3919 1.548719 TGTCCGTCATCCGTCATTTCT 59.451 47.619 0.00 0.00 33.66 2.52
3528 3920 1.927174 GTCCGTCATCCGTCATTTCTG 59.073 52.381 0.00 0.00 33.66 3.02
3529 3921 1.822371 TCCGTCATCCGTCATTTCTGA 59.178 47.619 0.00 0.00 33.66 3.27
3530 3922 1.927174 CCGTCATCCGTCATTTCTGAC 59.073 52.381 0.00 0.00 46.89 3.51
3540 3932 4.574527 GTCATTTCTGACGACTGTGATG 57.425 45.455 0.00 0.00 42.24 3.07
3541 3933 3.990469 GTCATTTCTGACGACTGTGATGT 59.010 43.478 0.00 0.00 42.24 3.06
3542 3934 5.161358 GTCATTTCTGACGACTGTGATGTA 58.839 41.667 0.00 0.00 42.24 2.29
3543 3935 5.287274 GTCATTTCTGACGACTGTGATGTAG 59.713 44.000 0.00 0.00 42.24 2.74
3544 3936 2.921634 TCTGACGACTGTGATGTAGC 57.078 50.000 0.00 0.00 0.00 3.58
3545 3937 2.437413 TCTGACGACTGTGATGTAGCT 58.563 47.619 0.00 0.00 0.00 3.32
3546 3938 2.162408 TCTGACGACTGTGATGTAGCTG 59.838 50.000 0.00 0.00 0.00 4.24
3547 3939 1.886542 TGACGACTGTGATGTAGCTGT 59.113 47.619 0.00 0.00 0.00 4.40
3548 3940 2.254459 GACGACTGTGATGTAGCTGTG 58.746 52.381 0.00 0.00 0.00 3.66
3549 3941 1.067565 ACGACTGTGATGTAGCTGTGG 60.068 52.381 0.00 0.00 0.00 4.17
3550 3942 1.363744 GACTGTGATGTAGCTGTGGC 58.636 55.000 0.00 0.00 39.06 5.01
3551 3943 0.686789 ACTGTGATGTAGCTGTGGCA 59.313 50.000 0.00 0.00 41.70 4.92
3552 3944 1.280133 ACTGTGATGTAGCTGTGGCAT 59.720 47.619 0.00 0.00 41.70 4.40
3553 3945 2.290514 ACTGTGATGTAGCTGTGGCATT 60.291 45.455 0.00 0.00 41.70 3.56
3554 3946 2.751259 CTGTGATGTAGCTGTGGCATTT 59.249 45.455 0.00 0.00 41.70 2.32
3555 3947 3.156293 TGTGATGTAGCTGTGGCATTTT 58.844 40.909 0.00 0.00 41.70 1.82
3556 3948 3.573538 TGTGATGTAGCTGTGGCATTTTT 59.426 39.130 0.00 0.00 41.70 1.94
3557 3949 3.922240 GTGATGTAGCTGTGGCATTTTTG 59.078 43.478 0.00 0.00 41.70 2.44
3558 3950 2.437200 TGTAGCTGTGGCATTTTTGC 57.563 45.000 0.00 0.00 41.70 3.68
3559 3951 1.685517 TGTAGCTGTGGCATTTTTGCA 59.314 42.857 0.00 0.00 41.70 4.08
3560 3952 2.102084 TGTAGCTGTGGCATTTTTGCAA 59.898 40.909 0.00 0.00 41.70 4.08
3561 3953 1.585297 AGCTGTGGCATTTTTGCAAC 58.415 45.000 0.00 0.00 41.70 4.17
3562 3954 1.134461 AGCTGTGGCATTTTTGCAACA 60.134 42.857 0.00 7.85 45.54 3.33
3563 3955 1.669779 GCTGTGGCATTTTTGCAACAA 59.330 42.857 9.29 0.00 46.76 2.83
3564 3956 2.286536 GCTGTGGCATTTTTGCAACAAG 60.287 45.455 9.29 5.45 46.76 3.16
3565 3957 3.196463 CTGTGGCATTTTTGCAACAAGA 58.804 40.909 9.29 0.00 46.76 3.02
3566 3958 2.935201 TGTGGCATTTTTGCAACAAGAC 59.065 40.909 5.72 0.00 44.85 3.01
3567 3959 3.197265 GTGGCATTTTTGCAACAAGACT 58.803 40.909 0.00 0.00 38.55 3.24
3568 3960 3.245990 GTGGCATTTTTGCAACAAGACTC 59.754 43.478 0.00 0.00 38.55 3.36
3569 3961 2.802247 GGCATTTTTGCAACAAGACTCC 59.198 45.455 0.00 0.00 36.33 3.85
3570 3962 3.456280 GCATTTTTGCAACAAGACTCCA 58.544 40.909 0.00 0.00 34.41 3.86
3571 3963 4.060205 GCATTTTTGCAACAAGACTCCAT 58.940 39.130 0.00 0.00 34.41 3.41
3572 3964 4.512571 GCATTTTTGCAACAAGACTCCATT 59.487 37.500 0.00 0.00 34.41 3.16
3573 3965 5.333568 GCATTTTTGCAACAAGACTCCATTC 60.334 40.000 0.00 0.00 34.41 2.67
3574 3966 5.596836 TTTTTGCAACAAGACTCCATTCT 57.403 34.783 0.00 0.00 0.00 2.40
3575 3967 6.707440 TTTTTGCAACAAGACTCCATTCTA 57.293 33.333 0.00 0.00 0.00 2.10
3576 3968 6.899393 TTTTGCAACAAGACTCCATTCTAT 57.101 33.333 0.00 0.00 0.00 1.98
3577 3969 5.885230 TTGCAACAAGACTCCATTCTATG 57.115 39.130 0.00 0.00 0.00 2.23
3578 3970 3.691118 TGCAACAAGACTCCATTCTATGC 59.309 43.478 0.00 0.00 33.59 3.14
3579 3971 3.944015 GCAACAAGACTCCATTCTATGCT 59.056 43.478 0.00 0.00 31.78 3.79
3580 3972 4.397417 GCAACAAGACTCCATTCTATGCTT 59.603 41.667 0.00 0.00 31.78 3.91
3581 3973 5.448360 GCAACAAGACTCCATTCTATGCTTC 60.448 44.000 0.00 0.00 31.78 3.86
3582 3974 5.426689 ACAAGACTCCATTCTATGCTTCA 57.573 39.130 0.00 0.00 0.00 3.02
3583 3975 5.809001 ACAAGACTCCATTCTATGCTTCAA 58.191 37.500 0.00 0.00 0.00 2.69
3584 3976 6.421485 ACAAGACTCCATTCTATGCTTCAAT 58.579 36.000 0.00 0.00 0.00 2.57
3585 3977 6.888632 ACAAGACTCCATTCTATGCTTCAATT 59.111 34.615 0.00 0.00 0.00 2.32
3586 3978 7.395489 ACAAGACTCCATTCTATGCTTCAATTT 59.605 33.333 0.00 0.00 0.00 1.82
3587 3979 7.330900 AGACTCCATTCTATGCTTCAATTTG 57.669 36.000 0.00 0.00 0.00 2.32
3588 3980 5.899299 ACTCCATTCTATGCTTCAATTTGC 58.101 37.500 0.00 0.00 0.00 3.68
3589 3981 5.419788 ACTCCATTCTATGCTTCAATTTGCA 59.580 36.000 0.00 0.00 43.67 4.08
3591 3983 7.286087 ACTCCATTCTATGCTTCAATTTGCATA 59.714 33.333 13.51 13.51 46.53 3.14
3592 3984 8.009622 TCCATTCTATGCTTCAATTTGCATAA 57.990 30.769 14.50 7.03 46.99 1.90
3593 3985 8.476447 TCCATTCTATGCTTCAATTTGCATAAA 58.524 29.630 14.50 12.39 46.99 1.40
3594 3986 8.545420 CCATTCTATGCTTCAATTTGCATAAAC 58.455 33.333 14.50 0.00 46.99 2.01
3595 3987 8.545420 CATTCTATGCTTCAATTTGCATAAACC 58.455 33.333 14.50 0.00 46.99 3.27
3596 3988 6.572519 TCTATGCTTCAATTTGCATAAACCC 58.427 36.000 14.50 0.00 46.99 4.11
3597 3989 3.936564 TGCTTCAATTTGCATAAACCCC 58.063 40.909 0.00 0.00 33.94 4.95
3598 3990 3.582208 TGCTTCAATTTGCATAAACCCCT 59.418 39.130 0.00 0.00 33.94 4.79
3599 3991 4.041444 TGCTTCAATTTGCATAAACCCCTT 59.959 37.500 0.00 0.00 33.94 3.95
3600 3992 5.247110 TGCTTCAATTTGCATAAACCCCTTA 59.753 36.000 0.00 0.00 33.94 2.69
3601 3993 5.812127 GCTTCAATTTGCATAAACCCCTTAG 59.188 40.000 0.00 0.00 0.00 2.18
3602 3994 6.574269 GCTTCAATTTGCATAAACCCCTTAGT 60.574 38.462 0.00 0.00 0.00 2.24
3603 3995 7.363443 GCTTCAATTTGCATAAACCCCTTAGTA 60.363 37.037 0.00 0.00 0.00 1.82
3604 3996 8.602472 TTCAATTTGCATAAACCCCTTAGTAT 57.398 30.769 0.00 0.00 0.00 2.12
3605 3997 8.232913 TCAATTTGCATAAACCCCTTAGTATC 57.767 34.615 0.00 0.00 0.00 2.24
3606 3998 8.058847 TCAATTTGCATAAACCCCTTAGTATCT 58.941 33.333 0.00 0.00 0.00 1.98
3607 3999 8.695456 CAATTTGCATAAACCCCTTAGTATCTT 58.305 33.333 0.00 0.00 0.00 2.40
3608 4000 7.639113 TTTGCATAAACCCCTTAGTATCTTG 57.361 36.000 0.00 0.00 0.00 3.02
3609 4001 6.569127 TGCATAAACCCCTTAGTATCTTGA 57.431 37.500 0.00 0.00 0.00 3.02
3610 4002 6.964464 TGCATAAACCCCTTAGTATCTTGAA 58.036 36.000 0.00 0.00 0.00 2.69
3611 4003 7.406916 TGCATAAACCCCTTAGTATCTTGAAA 58.593 34.615 0.00 0.00 0.00 2.69
3612 4004 7.338449 TGCATAAACCCCTTAGTATCTTGAAAC 59.662 37.037 0.00 0.00 0.00 2.78
3613 4005 7.201794 GCATAAACCCCTTAGTATCTTGAAACC 60.202 40.741 0.00 0.00 0.00 3.27
3614 4006 5.853572 AACCCCTTAGTATCTTGAAACCA 57.146 39.130 0.00 0.00 0.00 3.67
3615 4007 5.437191 ACCCCTTAGTATCTTGAAACCAG 57.563 43.478 0.00 0.00 0.00 4.00
3616 4008 4.200092 CCCCTTAGTATCTTGAAACCAGC 58.800 47.826 0.00 0.00 0.00 4.85
3617 4009 4.200092 CCCTTAGTATCTTGAAACCAGCC 58.800 47.826 0.00 0.00 0.00 4.85
3618 4010 4.324254 CCCTTAGTATCTTGAAACCAGCCA 60.324 45.833 0.00 0.00 0.00 4.75
3619 4011 4.636206 CCTTAGTATCTTGAAACCAGCCAC 59.364 45.833 0.00 0.00 0.00 5.01
3620 4012 3.788227 AGTATCTTGAAACCAGCCACA 57.212 42.857 0.00 0.00 0.00 4.17
3621 4013 4.307032 AGTATCTTGAAACCAGCCACAT 57.693 40.909 0.00 0.00 0.00 3.21
3622 4014 4.265073 AGTATCTTGAAACCAGCCACATC 58.735 43.478 0.00 0.00 0.00 3.06
3623 4015 1.909700 TCTTGAAACCAGCCACATCC 58.090 50.000 0.00 0.00 0.00 3.51
3624 4016 0.890683 CTTGAAACCAGCCACATCCC 59.109 55.000 0.00 0.00 0.00 3.85
3625 4017 0.482446 TTGAAACCAGCCACATCCCT 59.518 50.000 0.00 0.00 0.00 4.20
3626 4018 0.038166 TGAAACCAGCCACATCCCTC 59.962 55.000 0.00 0.00 0.00 4.30
3627 4019 0.681243 GAAACCAGCCACATCCCTCC 60.681 60.000 0.00 0.00 0.00 4.30
3628 4020 2.155197 AAACCAGCCACATCCCTCCC 62.155 60.000 0.00 0.00 0.00 4.30
3629 4021 3.813724 CCAGCCACATCCCTCCCC 61.814 72.222 0.00 0.00 0.00 4.81
3630 4022 3.813724 CAGCCACATCCCTCCCCC 61.814 72.222 0.00 0.00 0.00 5.40
3631 4023 4.369591 AGCCACATCCCTCCCCCA 62.370 66.667 0.00 0.00 0.00 4.96
3632 4024 4.129148 GCCACATCCCTCCCCCAC 62.129 72.222 0.00 0.00 0.00 4.61
3633 4025 3.420482 CCACATCCCTCCCCCACC 61.420 72.222 0.00 0.00 0.00 4.61
3634 4026 2.286425 CACATCCCTCCCCCACCT 60.286 66.667 0.00 0.00 0.00 4.00
3635 4027 2.042930 ACATCCCTCCCCCACCTC 59.957 66.667 0.00 0.00 0.00 3.85
3636 4028 2.042762 CATCCCTCCCCCACCTCA 59.957 66.667 0.00 0.00 0.00 3.86
3637 4029 1.386485 CATCCCTCCCCCACCTCAT 60.386 63.158 0.00 0.00 0.00 2.90
3638 4030 1.073397 ATCCCTCCCCCACCTCATC 60.073 63.158 0.00 0.00 0.00 2.92
3639 4031 1.913321 ATCCCTCCCCCACCTCATCA 61.913 60.000 0.00 0.00 0.00 3.07
3640 4032 1.619363 CCCTCCCCCACCTCATCAA 60.619 63.158 0.00 0.00 0.00 2.57
3641 4033 1.214305 CCCTCCCCCACCTCATCAAA 61.214 60.000 0.00 0.00 0.00 2.69
3642 4034 0.704076 CCTCCCCCACCTCATCAAAA 59.296 55.000 0.00 0.00 0.00 2.44
3643 4035 1.616994 CCTCCCCCACCTCATCAAAAC 60.617 57.143 0.00 0.00 0.00 2.43
3644 4036 1.075374 CTCCCCCACCTCATCAAAACA 59.925 52.381 0.00 0.00 0.00 2.83
3645 4037 1.075374 TCCCCCACCTCATCAAAACAG 59.925 52.381 0.00 0.00 0.00 3.16
3646 4038 1.203050 CCCCCACCTCATCAAAACAGT 60.203 52.381 0.00 0.00 0.00 3.55
3647 4039 2.162681 CCCCACCTCATCAAAACAGTC 58.837 52.381 0.00 0.00 0.00 3.51
3648 4040 2.488891 CCCCACCTCATCAAAACAGTCA 60.489 50.000 0.00 0.00 0.00 3.41
3649 4041 2.554032 CCCACCTCATCAAAACAGTCAC 59.446 50.000 0.00 0.00 0.00 3.67
3650 4042 2.224079 CCACCTCATCAAAACAGTCACG 59.776 50.000 0.00 0.00 0.00 4.35
3651 4043 3.130633 CACCTCATCAAAACAGTCACGA 58.869 45.455 0.00 0.00 0.00 4.35
3652 4044 3.185188 CACCTCATCAAAACAGTCACGAG 59.815 47.826 0.00 0.00 0.00 4.18
3653 4045 2.738846 CCTCATCAAAACAGTCACGAGG 59.261 50.000 0.00 0.00 33.40 4.63
3654 4046 3.554960 CCTCATCAAAACAGTCACGAGGA 60.555 47.826 0.00 0.00 41.07 3.71
3655 4047 4.058124 CTCATCAAAACAGTCACGAGGAA 58.942 43.478 0.00 0.00 0.00 3.36
3656 4048 4.641396 TCATCAAAACAGTCACGAGGAAT 58.359 39.130 0.00 0.00 0.00 3.01
3657 4049 5.789521 TCATCAAAACAGTCACGAGGAATA 58.210 37.500 0.00 0.00 0.00 1.75
3658 4050 6.406370 TCATCAAAACAGTCACGAGGAATAT 58.594 36.000 0.00 0.00 0.00 1.28
3659 4051 7.552459 TCATCAAAACAGTCACGAGGAATATA 58.448 34.615 0.00 0.00 0.00 0.86
3660 4052 8.204160 TCATCAAAACAGTCACGAGGAATATAT 58.796 33.333 0.00 0.00 0.00 0.86
3661 4053 8.830580 CATCAAAACAGTCACGAGGAATATATT 58.169 33.333 0.00 0.00 0.00 1.28
3718 4110 9.221933 AGTGATATATCTACCGAAACTAGAGTG 57.778 37.037 13.79 0.00 0.00 3.51
3719 4111 9.001542 GTGATATATCTACCGAAACTAGAGTGT 57.998 37.037 13.79 0.00 0.00 3.55
3720 4112 9.570468 TGATATATCTACCGAAACTAGAGTGTT 57.430 33.333 13.79 0.00 0.00 3.32
3724 4116 7.886405 ATCTACCGAAACTAGAGTGTTTTTC 57.114 36.000 0.00 0.00 39.86 2.29
3725 4117 7.047460 TCTACCGAAACTAGAGTGTTTTTCT 57.953 36.000 0.00 0.00 39.86 2.52
3726 4118 7.495055 TCTACCGAAACTAGAGTGTTTTTCTT 58.505 34.615 0.00 0.00 39.86 2.52
3727 4119 6.997239 ACCGAAACTAGAGTGTTTTTCTTT 57.003 33.333 0.00 0.00 39.86 2.52
3728 4120 7.012959 ACCGAAACTAGAGTGTTTTTCTTTC 57.987 36.000 0.00 0.00 39.86 2.62
3729 4121 6.596497 ACCGAAACTAGAGTGTTTTTCTTTCA 59.404 34.615 0.00 0.00 39.86 2.69
3730 4122 7.120138 ACCGAAACTAGAGTGTTTTTCTTTCAA 59.880 33.333 0.00 0.00 39.86 2.69
3731 4123 7.640240 CCGAAACTAGAGTGTTTTTCTTTCAAG 59.360 37.037 0.00 0.00 39.86 3.02
3732 4124 8.175716 CGAAACTAGAGTGTTTTTCTTTCAAGT 58.824 33.333 0.00 0.00 39.86 3.16
3733 4125 9.841880 GAAACTAGAGTGTTTTTCTTTCAAGTT 57.158 29.630 0.00 0.00 39.86 2.66
3735 4127 9.626045 AACTAGAGTGTTTTTCTTTCAAGTTTG 57.374 29.630 0.00 0.00 0.00 2.93
3736 4128 8.793592 ACTAGAGTGTTTTTCTTTCAAGTTTGT 58.206 29.630 0.00 0.00 0.00 2.83
3737 4129 7.873739 AGAGTGTTTTTCTTTCAAGTTTGTG 57.126 32.000 0.00 0.00 0.00 3.33
3738 4130 7.657336 AGAGTGTTTTTCTTTCAAGTTTGTGA 58.343 30.769 0.00 0.00 0.00 3.58
3739 4131 8.141268 AGAGTGTTTTTCTTTCAAGTTTGTGAA 58.859 29.630 0.00 0.00 35.72 3.18
3740 4132 8.831715 AGTGTTTTTCTTTCAAGTTTGTGAAT 57.168 26.923 0.00 0.00 37.36 2.57
3741 4133 9.921637 AGTGTTTTTCTTTCAAGTTTGTGAATA 57.078 25.926 0.00 0.00 37.36 1.75
3768 4160 8.609176 TGTATTATTCTACTTTGAATCCGTTGC 58.391 33.333 0.00 0.00 37.73 4.17
3769 4161 7.624360 ATTATTCTACTTTGAATCCGTTGCA 57.376 32.000 0.00 0.00 37.73 4.08
3770 4162 5.957842 ATTCTACTTTGAATCCGTTGCAA 57.042 34.783 0.00 0.00 31.72 4.08
3771 4163 4.742438 TCTACTTTGAATCCGTTGCAAC 57.258 40.909 19.89 19.89 0.00 4.17
3772 4164 5.616866 ATTCTACTTTGAATCCGTTGCAACG 60.617 40.000 38.24 38.24 39.21 4.10
3773 4165 8.952992 ATTCTACTTTGAATCCGTTGCAACGC 62.953 42.308 39.42 27.79 37.57 4.84
3789 4181 4.241999 GCACGGGCGCATTGCTAG 62.242 66.667 10.83 0.00 45.43 3.42
3796 4188 0.521291 GGCGCATTGCTAGTTTCACA 59.479 50.000 10.83 0.00 45.43 3.58
3810 4202 9.719355 TGCTAGTTTCACAAGAAATGTAGAATA 57.281 29.630 11.43 0.00 44.87 1.75
3828 4220 2.804986 TAGATTCCATGGTGCAGCAA 57.195 45.000 24.18 6.57 0.00 3.91
3847 4239 2.045926 GCAGGCAGGTGATTCCGT 60.046 61.111 0.00 0.00 41.99 4.69
4049 6329 5.067413 CGACTTAGCAACTCTAATGTCCCTA 59.933 44.000 0.00 0.00 36.72 3.53
4090 6370 9.538508 AGAAACAACATTTAACTAGTAGAACGT 57.461 29.630 3.59 0.00 0.00 3.99
4092 6372 9.538508 AAACAACATTTAACTAGTAGAACGTCT 57.461 29.630 3.59 0.00 0.00 4.18
4133 6413 8.482429 GCTGCAATGCATATAACTAAATCAAAC 58.518 33.333 8.91 0.00 38.13 2.93
4193 6473 4.568359 TCAAAGCTCATTTCTCTCGCATAC 59.432 41.667 0.00 0.00 0.00 2.39
4220 6500 0.162933 CGTGTTCGGACATCAAACGG 59.837 55.000 0.00 0.00 38.23 4.44
4222 6502 0.604243 TGTTCGGACATCAAACGGGG 60.604 55.000 0.00 0.00 0.00 5.73
4242 6522 4.248058 GGGCTCCACAAAATTCAATCTTG 58.752 43.478 0.00 0.00 0.00 3.02
4247 6527 4.283212 TCCACAAAATTCAATCTTGGGGAC 59.717 41.667 3.00 0.00 45.57 4.46
4251 6531 5.221501 ACAAAATTCAATCTTGGGGACAGTG 60.222 40.000 0.00 0.00 44.54 3.66
4261 6541 1.128188 GGGGACAGTGTCAACTCCCT 61.128 60.000 24.20 0.00 39.65 4.20
4293 6573 4.924305 CCATATGTGGGGAAGAAATGTG 57.076 45.455 0.00 0.00 42.11 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.435938 GCGGCTCGAACATGGGAA 60.436 61.111 0.00 0.00 0.00 3.97
1 2 4.467084 GGCGGCTCGAACATGGGA 62.467 66.667 0.00 0.00 0.00 4.37
18 19 4.760047 CAAGGGTGGAGGACGGCG 62.760 72.222 4.80 4.80 0.00 6.46
20 21 3.316573 GAGCAAGGGTGGAGGACGG 62.317 68.421 0.00 0.00 0.00 4.79
21 22 2.266055 GAGCAAGGGTGGAGGACG 59.734 66.667 0.00 0.00 0.00 4.79
22 23 2.671682 GGAGCAAGGGTGGAGGAC 59.328 66.667 0.00 0.00 0.00 3.85
23 24 2.610859 GGGAGCAAGGGTGGAGGA 60.611 66.667 0.00 0.00 0.00 3.71
24 25 3.732849 GGGGAGCAAGGGTGGAGG 61.733 72.222 0.00 0.00 0.00 4.30
25 26 2.276309 GATGGGGAGCAAGGGTGGAG 62.276 65.000 0.00 0.00 0.00 3.86
26 27 2.204291 ATGGGGAGCAAGGGTGGA 60.204 61.111 0.00 0.00 0.00 4.02
27 28 2.276740 GATGGGGAGCAAGGGTGG 59.723 66.667 0.00 0.00 0.00 4.61
28 29 2.276740 GGATGGGGAGCAAGGGTG 59.723 66.667 0.00 0.00 0.00 4.61
29 30 2.204291 TGGATGGGGAGCAAGGGT 60.204 61.111 0.00 0.00 0.00 4.34
30 31 2.276740 GTGGATGGGGAGCAAGGG 59.723 66.667 0.00 0.00 0.00 3.95
31 32 2.124570 CGTGGATGGGGAGCAAGG 60.125 66.667 0.00 0.00 0.00 3.61
32 33 2.825836 GCGTGGATGGGGAGCAAG 60.826 66.667 0.00 0.00 0.00 4.01
33 34 4.424711 GGCGTGGATGGGGAGCAA 62.425 66.667 0.00 0.00 0.00 3.91
41 42 3.499929 ATCTACGGCGGCGTGGATG 62.500 63.158 45.68 31.35 38.37 3.51
42 43 3.224324 ATCTACGGCGGCGTGGAT 61.224 61.111 42.94 42.94 35.71 3.41
43 44 4.201679 CATCTACGGCGGCGTGGA 62.202 66.667 42.66 42.66 34.12 4.02
63 64 0.247616 GACGAAGAGTACTCGGCGAC 60.248 60.000 32.34 25.98 35.86 5.19
64 65 1.364626 GGACGAAGAGTACTCGGCGA 61.365 60.000 32.34 10.14 35.44 5.54
65 66 1.062206 GGACGAAGAGTACTCGGCG 59.938 63.158 27.38 27.38 35.44 6.46
66 67 1.432657 GGGACGAAGAGTACTCGGC 59.567 63.158 17.07 8.74 33.01 5.54
67 68 1.382692 GGGGGACGAAGAGTACTCGG 61.383 65.000 17.07 12.65 33.90 4.63
68 69 0.679002 TGGGGGACGAAGAGTACTCG 60.679 60.000 17.07 9.23 33.90 4.18
69 70 0.816373 GTGGGGGACGAAGAGTACTC 59.184 60.000 15.41 15.41 33.01 2.59
70 71 0.614134 GGTGGGGGACGAAGAGTACT 60.614 60.000 0.00 0.00 33.01 2.73
71 72 1.895966 GGTGGGGGACGAAGAGTAC 59.104 63.158 0.00 0.00 0.00 2.73
72 73 1.679977 CGGTGGGGGACGAAGAGTA 60.680 63.158 0.00 0.00 0.00 2.59
73 74 2.995574 CGGTGGGGGACGAAGAGT 60.996 66.667 0.00 0.00 0.00 3.24
74 75 4.452733 GCGGTGGGGGACGAAGAG 62.453 72.222 0.00 0.00 0.00 2.85
84 85 4.511246 ATCCATGCTGGCGGTGGG 62.511 66.667 13.92 0.00 37.47 4.61
85 86 2.971095 ATCATCCATGCTGGCGGTGG 62.971 60.000 9.54 9.54 37.47 4.61
86 87 1.527611 ATCATCCATGCTGGCGGTG 60.528 57.895 0.00 0.00 37.47 4.94
87 88 1.527611 CATCATCCATGCTGGCGGT 60.528 57.895 0.00 0.00 37.47 5.68
88 89 3.351450 CATCATCCATGCTGGCGG 58.649 61.111 0.00 0.00 37.47 6.13
95 96 2.322830 CGCCGAGGCATCATCCATG 61.323 63.158 15.03 0.00 42.06 3.66
96 97 2.031616 CGCCGAGGCATCATCCAT 59.968 61.111 15.03 0.00 42.06 3.41
97 98 4.240103 CCGCCGAGGCATCATCCA 62.240 66.667 15.03 0.00 42.06 3.41
98 99 3.873026 CTCCGCCGAGGCATCATCC 62.873 68.421 15.03 0.00 42.06 3.51
99 100 2.356793 CTCCGCCGAGGCATCATC 60.357 66.667 15.03 0.00 42.06 2.92
100 101 3.157217 GACTCCGCCGAGGCATCAT 62.157 63.158 15.03 0.00 44.47 2.45
101 102 3.838271 GACTCCGCCGAGGCATCA 61.838 66.667 15.03 0.00 44.47 3.07
105 106 3.991536 GAACAGACTCCGCCGAGGC 62.992 68.421 3.59 3.59 45.57 4.70
106 107 2.182030 GAACAGACTCCGCCGAGG 59.818 66.667 7.01 0.00 40.77 4.63
107 108 2.182030 GGAACAGACTCCGCCGAG 59.818 66.667 0.09 0.09 42.32 4.63
108 109 2.599281 TGGAACAGACTCCGCCGA 60.599 61.111 0.00 0.00 38.44 5.54
119 120 1.745890 CACGGACAGGACTGGAACA 59.254 57.895 4.14 0.00 34.19 3.18
120 121 1.004918 CCACGGACAGGACTGGAAC 60.005 63.158 4.14 0.00 34.19 3.62
121 122 2.879233 GCCACGGACAGGACTGGAA 61.879 63.158 4.14 0.00 34.19 3.53
122 123 3.311110 GCCACGGACAGGACTGGA 61.311 66.667 4.14 0.00 34.19 3.86
123 124 3.596066 CTGCCACGGACAGGACTGG 62.596 68.421 4.14 0.00 34.19 4.00
124 125 2.047844 CTGCCACGGACAGGACTG 60.048 66.667 0.00 0.00 0.00 3.51
125 126 4.008933 GCTGCCACGGACAGGACT 62.009 66.667 8.82 0.00 35.62 3.85
139 140 3.449227 CCACCATGCAGCTGGCTG 61.449 66.667 17.12 17.16 45.15 4.85
140 141 3.640257 CTCCACCATGCAGCTGGCT 62.640 63.158 17.12 0.00 45.15 4.75
141 142 3.138798 CTCCACCATGCAGCTGGC 61.139 66.667 17.12 8.54 40.15 4.85
142 143 0.395311 ATTCTCCACCATGCAGCTGG 60.395 55.000 17.12 4.73 42.35 4.85
143 144 0.738975 CATTCTCCACCATGCAGCTG 59.261 55.000 10.11 10.11 0.00 4.24
144 145 0.330604 ACATTCTCCACCATGCAGCT 59.669 50.000 0.00 0.00 0.00 4.24
145 146 0.737219 GACATTCTCCACCATGCAGC 59.263 55.000 0.00 0.00 0.00 5.25
146 147 1.012086 CGACATTCTCCACCATGCAG 58.988 55.000 0.00 0.00 0.00 4.41
147 148 1.026182 GCGACATTCTCCACCATGCA 61.026 55.000 0.00 0.00 0.00 3.96
148 149 1.718757 GGCGACATTCTCCACCATGC 61.719 60.000 0.00 0.00 0.00 4.06
149 150 1.097547 GGGCGACATTCTCCACCATG 61.098 60.000 0.00 0.00 0.00 3.66
150 151 1.224592 GGGCGACATTCTCCACCAT 59.775 57.895 0.00 0.00 0.00 3.55
151 152 2.668632 GGGCGACATTCTCCACCA 59.331 61.111 0.00 0.00 0.00 4.17
152 153 2.124695 GGGGCGACATTCTCCACC 60.125 66.667 0.00 0.00 0.00 4.61
153 154 2.511600 CGGGGCGACATTCTCCAC 60.512 66.667 0.00 0.00 0.00 4.02
154 155 2.682136 TCGGGGCGACATTCTCCA 60.682 61.111 0.00 0.00 0.00 3.86
155 156 2.107141 CTCGGGGCGACATTCTCC 59.893 66.667 0.00 0.00 0.00 3.71
156 157 2.107141 CCTCGGGGCGACATTCTC 59.893 66.667 0.00 0.00 0.00 2.87
157 158 3.470888 CCCTCGGGGCGACATTCT 61.471 66.667 0.00 0.00 35.35 2.40
158 159 3.447025 CTCCCTCGGGGCGACATTC 62.447 68.421 0.00 0.00 43.94 2.67
159 160 3.470888 CTCCCTCGGGGCGACATT 61.471 66.667 0.00 0.00 43.94 2.71
167 168 4.899239 GTGCGATGCTCCCTCGGG 62.899 72.222 0.00 0.00 36.65 5.14
168 169 4.899239 GGTGCGATGCTCCCTCGG 62.899 72.222 0.00 0.00 36.35 4.63
189 190 1.773054 GCATCATCCTGCTCGTGCTG 61.773 60.000 11.19 10.09 39.12 4.41
190 191 1.523258 GCATCATCCTGCTCGTGCT 60.523 57.895 11.19 0.00 39.12 4.40
191 192 2.879070 CGCATCATCCTGCTCGTGC 61.879 63.158 1.71 1.71 40.06 5.34
192 193 2.242572 CCGCATCATCCTGCTCGTG 61.243 63.158 0.00 0.00 40.06 4.35
193 194 2.107750 CCGCATCATCCTGCTCGT 59.892 61.111 0.00 0.00 40.06 4.18
194 195 3.344215 GCCGCATCATCCTGCTCG 61.344 66.667 0.00 0.00 40.06 5.03
195 196 3.344215 CGCCGCATCATCCTGCTC 61.344 66.667 0.00 0.00 40.06 4.26
196 197 3.390183 TTCGCCGCATCATCCTGCT 62.390 57.895 0.00 0.00 40.06 4.24
197 198 2.890109 CTTCGCCGCATCATCCTGC 61.890 63.158 0.00 0.00 38.81 4.85
198 199 0.811219 TTCTTCGCCGCATCATCCTG 60.811 55.000 0.00 0.00 0.00 3.86
199 200 0.107703 TTTCTTCGCCGCATCATCCT 60.108 50.000 0.00 0.00 0.00 3.24
200 201 0.305922 CTTTCTTCGCCGCATCATCC 59.694 55.000 0.00 0.00 0.00 3.51
201 202 1.009829 ACTTTCTTCGCCGCATCATC 58.990 50.000 0.00 0.00 0.00 2.92
202 203 1.131126 CAACTTTCTTCGCCGCATCAT 59.869 47.619 0.00 0.00 0.00 2.45
203 204 0.516877 CAACTTTCTTCGCCGCATCA 59.483 50.000 0.00 0.00 0.00 3.07
204 205 0.794605 GCAACTTTCTTCGCCGCATC 60.795 55.000 0.00 0.00 0.00 3.91
205 206 1.210155 GCAACTTTCTTCGCCGCAT 59.790 52.632 0.00 0.00 0.00 4.73
206 207 2.116736 CTGCAACTTTCTTCGCCGCA 62.117 55.000 0.00 0.00 0.00 5.69
207 208 1.441016 CTGCAACTTTCTTCGCCGC 60.441 57.895 0.00 0.00 0.00 6.53
208 209 0.110644 GACTGCAACTTTCTTCGCCG 60.111 55.000 0.00 0.00 0.00 6.46
209 210 0.944386 TGACTGCAACTTTCTTCGCC 59.056 50.000 0.00 0.00 0.00 5.54
210 211 1.657538 CGTGACTGCAACTTTCTTCGC 60.658 52.381 0.00 0.00 0.00 4.70
211 212 1.070577 CCGTGACTGCAACTTTCTTCG 60.071 52.381 0.00 0.00 0.00 3.79
212 213 2.210116 TCCGTGACTGCAACTTTCTTC 58.790 47.619 0.00 0.00 0.00 2.87
213 214 2.213499 CTCCGTGACTGCAACTTTCTT 58.787 47.619 0.00 0.00 0.00 2.52
214 215 1.541233 CCTCCGTGACTGCAACTTTCT 60.541 52.381 0.00 0.00 0.00 2.52
215 216 0.868406 CCTCCGTGACTGCAACTTTC 59.132 55.000 0.00 0.00 0.00 2.62
216 217 0.180406 ACCTCCGTGACTGCAACTTT 59.820 50.000 0.00 0.00 0.00 2.66
217 218 0.532862 CACCTCCGTGACTGCAACTT 60.533 55.000 0.00 0.00 43.14 2.66
218 219 1.069765 CACCTCCGTGACTGCAACT 59.930 57.895 0.00 0.00 43.14 3.16
219 220 1.961277 CCACCTCCGTGACTGCAAC 60.961 63.158 0.00 0.00 43.14 4.17
220 221 2.377628 GACCACCTCCGTGACTGCAA 62.378 60.000 0.00 0.00 43.14 4.08
221 222 2.842462 ACCACCTCCGTGACTGCA 60.842 61.111 0.00 0.00 43.14 4.41
222 223 2.048127 GACCACCTCCGTGACTGC 60.048 66.667 0.00 0.00 43.14 4.40
223 224 0.105964 TTTGACCACCTCCGTGACTG 59.894 55.000 0.00 0.00 43.14 3.51
224 225 0.834612 TTTTGACCACCTCCGTGACT 59.165 50.000 0.00 0.00 43.14 3.41
225 226 1.804748 GATTTTGACCACCTCCGTGAC 59.195 52.381 0.00 0.00 43.14 3.67
226 227 1.606994 CGATTTTGACCACCTCCGTGA 60.607 52.381 0.00 0.00 43.14 4.35
227 228 0.796312 CGATTTTGACCACCTCCGTG 59.204 55.000 0.00 0.00 39.91 4.94
228 229 0.682852 TCGATTTTGACCACCTCCGT 59.317 50.000 0.00 0.00 0.00 4.69
229 230 1.076332 GTCGATTTTGACCACCTCCG 58.924 55.000 0.00 0.00 32.61 4.63
230 231 1.076332 CGTCGATTTTGACCACCTCC 58.924 55.000 0.00 0.00 35.40 4.30
231 232 1.459592 CACGTCGATTTTGACCACCTC 59.540 52.381 0.00 0.00 35.40 3.85
232 233 1.508632 CACGTCGATTTTGACCACCT 58.491 50.000 0.00 0.00 35.40 4.00
233 234 0.515564 CCACGTCGATTTTGACCACC 59.484 55.000 0.00 0.00 35.40 4.61
234 235 1.504359 TCCACGTCGATTTTGACCAC 58.496 50.000 0.00 0.00 35.40 4.16
235 236 2.073056 CATCCACGTCGATTTTGACCA 58.927 47.619 0.00 0.00 35.40 4.02
236 237 2.073816 ACATCCACGTCGATTTTGACC 58.926 47.619 0.00 0.00 35.40 4.02
237 238 2.478894 ACACATCCACGTCGATTTTGAC 59.521 45.455 0.00 0.00 35.49 3.18
238 239 2.734606 GACACATCCACGTCGATTTTGA 59.265 45.455 0.00 0.00 0.00 2.69
239 240 2.159707 GGACACATCCACGTCGATTTTG 60.160 50.000 0.00 0.00 45.47 2.44
240 241 2.073816 GGACACATCCACGTCGATTTT 58.926 47.619 0.00 0.00 45.47 1.82
241 242 1.722011 GGACACATCCACGTCGATTT 58.278 50.000 0.00 0.00 45.47 2.17
242 243 3.436001 GGACACATCCACGTCGATT 57.564 52.632 0.00 0.00 45.47 3.34
251 252 1.078426 CAACGGAGGGGACACATCC 60.078 63.158 0.00 0.00 46.47 3.51
252 253 1.745489 GCAACGGAGGGGACACATC 60.745 63.158 0.00 0.00 0.00 3.06
253 254 2.351276 GCAACGGAGGGGACACAT 59.649 61.111 0.00 0.00 0.00 3.21
254 255 4.308458 CGCAACGGAGGGGACACA 62.308 66.667 0.00 0.00 0.00 3.72
278 279 2.815211 CATCCACGTCGCAGGGTG 60.815 66.667 3.49 3.49 33.42 4.61
279 280 1.537814 TAACATCCACGTCGCAGGGT 61.538 55.000 4.67 0.00 0.00 4.34
280 281 0.806102 CTAACATCCACGTCGCAGGG 60.806 60.000 4.67 0.00 0.00 4.45
281 282 0.806102 CCTAACATCCACGTCGCAGG 60.806 60.000 0.00 0.00 0.00 4.85
282 283 0.806102 CCCTAACATCCACGTCGCAG 60.806 60.000 0.00 0.00 0.00 5.18
283 284 1.216977 CCCTAACATCCACGTCGCA 59.783 57.895 0.00 0.00 0.00 5.10
284 285 0.108520 TTCCCTAACATCCACGTCGC 60.109 55.000 0.00 0.00 0.00 5.19
285 286 2.373540 TTTCCCTAACATCCACGTCG 57.626 50.000 0.00 0.00 0.00 5.12
286 287 4.201783 CGAAATTTCCCTAACATCCACGTC 60.202 45.833 12.54 0.00 0.00 4.34
287 288 3.687698 CGAAATTTCCCTAACATCCACGT 59.312 43.478 12.54 0.00 0.00 4.49
288 289 3.936453 TCGAAATTTCCCTAACATCCACG 59.064 43.478 12.54 0.00 0.00 4.94
289 290 5.890424 TTCGAAATTTCCCTAACATCCAC 57.110 39.130 12.54 0.00 0.00 4.02
290 291 6.902771 TTTTCGAAATTTCCCTAACATCCA 57.097 33.333 12.12 0.00 0.00 3.41
291 292 7.320399 ACATTTTCGAAATTTCCCTAACATCC 58.680 34.615 12.12 0.00 0.00 3.51
292 293 8.757164 AACATTTTCGAAATTTCCCTAACATC 57.243 30.769 12.12 0.00 0.00 3.06
655 1035 2.037902 TGTGAATCAAACTCACGCCCTA 59.962 45.455 0.00 0.00 45.10 3.53
704 1084 2.542597 CATTTTACGGTAGGCGCTGTA 58.457 47.619 7.64 0.00 0.00 2.74
750 1130 0.949105 AACTGTCGATGGTTCGCACC 60.949 55.000 0.00 0.00 45.10 5.01
830 1210 2.163818 TCGACTTTACAGCCCAAGTG 57.836 50.000 0.00 0.00 33.22 3.16
845 1225 4.091365 GGCCTGTGCAAAATTTTAATCGAC 59.909 41.667 2.44 0.00 40.13 4.20
852 1232 6.529220 TGTTAATAGGCCTGTGCAAAATTTT 58.471 32.000 17.99 0.00 40.13 1.82
856 1236 4.769488 TGATGTTAATAGGCCTGTGCAAAA 59.231 37.500 17.99 2.21 40.13 2.44
876 1256 0.179073 CGAAGCCCAACCGATCTGAT 60.179 55.000 0.00 0.00 0.00 2.90
895 1275 8.753175 CAGCCGAATACTACAACTTAAACTATC 58.247 37.037 0.00 0.00 0.00 2.08
1401 1782 1.520342 GCGTCTCCCTAGCAAGCTG 60.520 63.158 4.53 0.00 0.00 4.24
1409 1790 1.758936 TTCGATTGAGCGTCTCCCTA 58.241 50.000 4.73 0.00 0.00 3.53
1422 1803 2.770232 ACTTCTTCCCGGGTATTCGATT 59.230 45.455 22.86 0.00 0.00 3.34
1433 1814 3.423154 GCCGTGCACTTCTTCCCG 61.423 66.667 16.19 0.00 0.00 5.14
1535 1916 3.933332 CCGAGTTCCAAGAAACTATGTCC 59.067 47.826 0.00 0.00 39.55 4.02
1568 1949 3.855689 ATTTTCTCATTGCGGGTCAAG 57.144 42.857 0.00 0.00 38.22 3.02
1704 2085 5.544176 TGACATTAGGTGAAGGAACTCTCTT 59.456 40.000 0.00 0.00 38.49 2.85
1715 2096 5.640147 ACCCAAGAAATGACATTAGGTGAA 58.360 37.500 0.00 0.00 0.00 3.18
1766 2147 2.210711 CGCCTCACCTATCCTCCCC 61.211 68.421 0.00 0.00 0.00 4.81
1874 2255 3.388024 TCTCCGCAAACAATCTATAGGCT 59.612 43.478 0.00 0.00 0.00 4.58
1890 2271 2.139118 GTTCTTATCTGGCATCTCCGC 58.861 52.381 0.00 0.00 37.80 5.54
1892 2273 4.679373 TGAGTTCTTATCTGGCATCTCC 57.321 45.455 0.00 0.00 0.00 3.71
2031 2412 2.699321 TCATCTTGCTCTGCAGATAGCT 59.301 45.455 23.68 9.49 45.94 3.32
2055 2436 0.955428 AAGATGTGGCGTGCGTCATT 60.955 50.000 1.33 0.00 30.18 2.57
2099 2480 3.827008 ATCATCGTATTCCAGCACACT 57.173 42.857 0.00 0.00 0.00 3.55
2162 2543 2.941720 GTTTGGCATTTGCTGGAACAAA 59.058 40.909 2.12 1.72 43.27 2.83
2231 2612 2.125952 GCCTTGCGCATTTGACCC 60.126 61.111 12.75 0.00 37.47 4.46
2253 2634 7.451255 CCTCTGACTCATCTTCCTGAATATACT 59.549 40.741 0.00 0.00 0.00 2.12
2264 2645 4.121317 CTGCATTCCTCTGACTCATCTTC 58.879 47.826 0.00 0.00 0.00 2.87
2272 2653 3.119291 CACGATACTGCATTCCTCTGAC 58.881 50.000 0.00 0.00 0.00 3.51
2511 2892 2.158769 ACTTGGCATATGCGGAGATCAA 60.159 45.455 26.32 19.53 43.26 2.57
2516 2897 0.659427 CACACTTGGCATATGCGGAG 59.341 55.000 21.04 20.95 43.26 4.63
2519 2900 0.378257 GTCCACACTTGGCATATGCG 59.622 55.000 21.04 10.32 43.56 4.73
2564 2945 0.249784 CCTGACCTGCCATCTCATCG 60.250 60.000 0.00 0.00 0.00 3.84
2603 2984 4.434545 AGAAGCATAGCCATCAATGAGT 57.565 40.909 0.00 0.00 0.00 3.41
2632 3013 1.146263 GAAATCGCCTCGGTCCCAT 59.854 57.895 0.00 0.00 0.00 4.00
2677 3058 3.138798 CCTCGTCGGGTCGGACAT 61.139 66.667 10.76 0.00 36.73 3.06
2834 3215 2.106566 TCACTCAATCTCCCAGCTCTC 58.893 52.381 0.00 0.00 0.00 3.20
2847 3228 6.151985 TGAACAAGTTTAAAGGCTTCACTCAA 59.848 34.615 0.00 0.00 0.00 3.02
2966 3347 5.701290 AGGTTCCAGTTCAAATAACTTCTCG 59.299 40.000 0.00 0.00 0.00 4.04
3211 3592 0.680921 GCCAGGATTTAGCAGGCACA 60.681 55.000 0.00 0.00 44.59 4.57
3212 3593 2.110296 GCCAGGATTTAGCAGGCAC 58.890 57.895 0.00 0.00 44.59 5.01
3239 3620 1.200716 CAACGCTGGCATGACAATTCT 59.799 47.619 1.11 0.00 0.00 2.40
3427 3808 3.830679 GTCCAGAGCTCAGGACTTG 57.169 57.895 37.72 18.61 45.65 3.16
3468 3860 9.179909 CAACTGAGTCTTTTATAGGAGTAGAGA 57.820 37.037 0.00 0.00 0.00 3.10
3469 3861 8.410141 CCAACTGAGTCTTTTATAGGAGTAGAG 58.590 40.741 0.00 0.00 0.00 2.43
3470 3862 7.894364 ACCAACTGAGTCTTTTATAGGAGTAGA 59.106 37.037 0.00 0.00 0.00 2.59
3471 3863 7.976734 CACCAACTGAGTCTTTTATAGGAGTAG 59.023 40.741 0.00 0.00 0.00 2.57
3472 3864 7.672660 TCACCAACTGAGTCTTTTATAGGAGTA 59.327 37.037 0.00 0.00 0.00 2.59
3473 3865 6.497259 TCACCAACTGAGTCTTTTATAGGAGT 59.503 38.462 0.00 0.00 0.00 3.85
3474 3866 6.814146 GTCACCAACTGAGTCTTTTATAGGAG 59.186 42.308 0.00 0.00 0.00 3.69
3475 3867 6.571731 CGTCACCAACTGAGTCTTTTATAGGA 60.572 42.308 0.00 0.00 0.00 2.94
3476 3868 5.577164 CGTCACCAACTGAGTCTTTTATAGG 59.423 44.000 0.00 0.00 0.00 2.57
3477 3869 6.308282 GTCGTCACCAACTGAGTCTTTTATAG 59.692 42.308 0.00 0.00 0.00 1.31
3478 3870 6.154445 GTCGTCACCAACTGAGTCTTTTATA 58.846 40.000 0.00 0.00 0.00 0.98
3479 3871 4.989168 GTCGTCACCAACTGAGTCTTTTAT 59.011 41.667 0.00 0.00 0.00 1.40
3480 3872 4.365723 GTCGTCACCAACTGAGTCTTTTA 58.634 43.478 0.00 0.00 0.00 1.52
3481 3873 3.195661 GTCGTCACCAACTGAGTCTTTT 58.804 45.455 0.00 0.00 0.00 2.27
3482 3874 2.798499 CGTCGTCACCAACTGAGTCTTT 60.798 50.000 0.00 0.00 0.00 2.52
3483 3875 1.269102 CGTCGTCACCAACTGAGTCTT 60.269 52.381 0.00 0.00 0.00 3.01
3484 3876 0.311165 CGTCGTCACCAACTGAGTCT 59.689 55.000 0.00 0.00 0.00 3.24
3485 3877 0.663568 CCGTCGTCACCAACTGAGTC 60.664 60.000 0.00 0.00 0.00 3.36
3486 3878 1.362717 CCGTCGTCACCAACTGAGT 59.637 57.895 0.00 0.00 0.00 3.41
3487 3879 0.939577 CACCGTCGTCACCAACTGAG 60.940 60.000 0.00 0.00 0.00 3.35
3488 3880 1.066752 CACCGTCGTCACCAACTGA 59.933 57.895 0.00 0.00 0.00 3.41
3489 3881 1.227147 ACACCGTCGTCACCAACTG 60.227 57.895 0.00 0.00 0.00 3.16
3490 3882 1.227147 CACACCGTCGTCACCAACT 60.227 57.895 0.00 0.00 0.00 3.16
3491 3883 1.485032 GACACACCGTCGTCACCAAC 61.485 60.000 0.00 0.00 34.19 3.77
3492 3884 1.227031 GACACACCGTCGTCACCAA 60.227 57.895 0.00 0.00 34.19 3.67
3493 3885 2.414179 GACACACCGTCGTCACCA 59.586 61.111 0.00 0.00 34.19 4.17
3494 3886 2.355481 GGACACACCGTCGTCACC 60.355 66.667 0.00 0.00 46.42 4.02
3519 3911 3.990469 ACATCACAGTCGTCAGAAATGAC 59.010 43.478 0.00 0.00 43.19 3.06
3520 3912 4.257267 ACATCACAGTCGTCAGAAATGA 57.743 40.909 0.00 0.00 0.00 2.57
3521 3913 4.032217 GCTACATCACAGTCGTCAGAAATG 59.968 45.833 0.00 0.00 0.00 2.32
3522 3914 4.081972 AGCTACATCACAGTCGTCAGAAAT 60.082 41.667 0.00 0.00 0.00 2.17
3523 3915 3.255888 AGCTACATCACAGTCGTCAGAAA 59.744 43.478 0.00 0.00 0.00 2.52
3524 3916 2.820197 AGCTACATCACAGTCGTCAGAA 59.180 45.455 0.00 0.00 0.00 3.02
3525 3917 2.162408 CAGCTACATCACAGTCGTCAGA 59.838 50.000 0.00 0.00 0.00 3.27
3526 3918 2.095008 ACAGCTACATCACAGTCGTCAG 60.095 50.000 0.00 0.00 0.00 3.51
3527 3919 1.886542 ACAGCTACATCACAGTCGTCA 59.113 47.619 0.00 0.00 0.00 4.35
3528 3920 2.254459 CACAGCTACATCACAGTCGTC 58.746 52.381 0.00 0.00 0.00 4.20
3529 3921 1.067565 CCACAGCTACATCACAGTCGT 60.068 52.381 0.00 0.00 0.00 4.34
3530 3922 1.633561 CCACAGCTACATCACAGTCG 58.366 55.000 0.00 0.00 0.00 4.18
3531 3923 1.338105 TGCCACAGCTACATCACAGTC 60.338 52.381 0.00 0.00 40.80 3.51
3532 3924 0.686789 TGCCACAGCTACATCACAGT 59.313 50.000 0.00 0.00 40.80 3.55
3533 3925 2.034104 ATGCCACAGCTACATCACAG 57.966 50.000 0.00 0.00 40.80 3.66
3534 3926 2.495155 AATGCCACAGCTACATCACA 57.505 45.000 0.00 0.00 40.80 3.58
3535 3927 3.855689 AAAATGCCACAGCTACATCAC 57.144 42.857 0.00 0.00 40.80 3.06
3536 3928 3.614630 GCAAAAATGCCACAGCTACATCA 60.615 43.478 0.00 0.00 40.80 3.07
3537 3929 2.925563 GCAAAAATGCCACAGCTACATC 59.074 45.455 0.00 0.00 40.80 3.06
3538 3930 2.299582 TGCAAAAATGCCACAGCTACAT 59.700 40.909 0.00 0.00 40.80 2.29
3539 3931 1.685517 TGCAAAAATGCCACAGCTACA 59.314 42.857 0.00 0.00 40.80 2.74
3540 3932 2.437200 TGCAAAAATGCCACAGCTAC 57.563 45.000 0.00 0.00 40.80 3.58
3541 3933 2.102084 TGTTGCAAAAATGCCACAGCTA 59.898 40.909 0.00 0.00 35.87 3.32
3542 3934 1.134461 TGTTGCAAAAATGCCACAGCT 60.134 42.857 0.00 0.00 35.87 4.24
3543 3935 1.297664 TGTTGCAAAAATGCCACAGC 58.702 45.000 0.00 0.00 35.87 4.40
3544 3936 3.001533 GTCTTGTTGCAAAAATGCCACAG 59.998 43.478 1.65 3.97 40.66 3.66
3545 3937 2.935201 GTCTTGTTGCAAAAATGCCACA 59.065 40.909 1.65 3.88 38.43 4.17
3546 3938 3.197265 AGTCTTGTTGCAAAAATGCCAC 58.803 40.909 1.65 0.00 0.00 5.01
3547 3939 3.456280 GAGTCTTGTTGCAAAAATGCCA 58.544 40.909 1.65 0.00 0.00 4.92
3548 3940 2.802247 GGAGTCTTGTTGCAAAAATGCC 59.198 45.455 1.65 0.00 0.00 4.40
3549 3941 3.456280 TGGAGTCTTGTTGCAAAAATGC 58.544 40.909 1.65 0.00 0.00 3.56
3550 3942 5.987347 AGAATGGAGTCTTGTTGCAAAAATG 59.013 36.000 1.65 0.00 0.00 2.32
3551 3943 6.165700 AGAATGGAGTCTTGTTGCAAAAAT 57.834 33.333 1.65 0.00 0.00 1.82
3552 3944 5.596836 AGAATGGAGTCTTGTTGCAAAAA 57.403 34.783 0.00 0.00 0.00 1.94
3553 3945 6.680810 CATAGAATGGAGTCTTGTTGCAAAA 58.319 36.000 0.00 0.00 0.00 2.44
3554 3946 5.335897 GCATAGAATGGAGTCTTGTTGCAAA 60.336 40.000 0.00 0.00 31.93 3.68
3555 3947 4.156556 GCATAGAATGGAGTCTTGTTGCAA 59.843 41.667 0.00 0.00 31.93 4.08
3556 3948 3.691118 GCATAGAATGGAGTCTTGTTGCA 59.309 43.478 0.00 0.00 31.93 4.08
3557 3949 3.944015 AGCATAGAATGGAGTCTTGTTGC 59.056 43.478 0.00 0.00 31.84 4.17
3558 3950 5.645067 TGAAGCATAGAATGGAGTCTTGTTG 59.355 40.000 0.00 0.00 0.00 3.33
3559 3951 5.809001 TGAAGCATAGAATGGAGTCTTGTT 58.191 37.500 0.00 0.00 0.00 2.83
3560 3952 5.426689 TGAAGCATAGAATGGAGTCTTGT 57.573 39.130 0.00 0.00 0.00 3.16
3561 3953 6.939132 ATTGAAGCATAGAATGGAGTCTTG 57.061 37.500 0.00 0.00 0.00 3.02
3562 3954 7.630082 GCAAATTGAAGCATAGAATGGAGTCTT 60.630 37.037 0.00 0.00 0.00 3.01
3563 3955 6.183360 GCAAATTGAAGCATAGAATGGAGTCT 60.183 38.462 0.00 0.00 0.00 3.24
3564 3956 5.975939 GCAAATTGAAGCATAGAATGGAGTC 59.024 40.000 0.00 0.00 0.00 3.36
3565 3957 5.419788 TGCAAATTGAAGCATAGAATGGAGT 59.580 36.000 0.00 0.00 35.51 3.85
3566 3958 5.898174 TGCAAATTGAAGCATAGAATGGAG 58.102 37.500 0.00 0.00 35.51 3.86
3567 3959 5.918426 TGCAAATTGAAGCATAGAATGGA 57.082 34.783 0.00 0.00 35.51 3.41
3576 3968 3.582208 AGGGGTTTATGCAAATTGAAGCA 59.418 39.130 0.00 3.38 45.92 3.91
3577 3969 4.206477 AGGGGTTTATGCAAATTGAAGC 57.794 40.909 0.00 0.00 0.00 3.86
3578 3970 6.935167 ACTAAGGGGTTTATGCAAATTGAAG 58.065 36.000 0.00 0.00 0.00 3.02
3579 3971 6.926630 ACTAAGGGGTTTATGCAAATTGAA 57.073 33.333 0.00 0.00 0.00 2.69
3580 3972 8.058847 AGATACTAAGGGGTTTATGCAAATTGA 58.941 33.333 0.00 0.00 0.00 2.57
3581 3973 8.237811 AGATACTAAGGGGTTTATGCAAATTG 57.762 34.615 0.00 0.00 0.00 2.32
3582 3974 8.695456 CAAGATACTAAGGGGTTTATGCAAATT 58.305 33.333 0.00 0.00 0.00 1.82
3583 3975 8.058847 TCAAGATACTAAGGGGTTTATGCAAAT 58.941 33.333 0.00 0.00 0.00 2.32
3584 3976 7.406916 TCAAGATACTAAGGGGTTTATGCAAA 58.593 34.615 0.00 0.00 0.00 3.68
3585 3977 6.964464 TCAAGATACTAAGGGGTTTATGCAA 58.036 36.000 0.00 0.00 0.00 4.08
3586 3978 6.569127 TCAAGATACTAAGGGGTTTATGCA 57.431 37.500 0.00 0.00 0.00 3.96
3587 3979 7.201794 GGTTTCAAGATACTAAGGGGTTTATGC 60.202 40.741 0.00 0.00 0.00 3.14
3588 3980 7.832187 TGGTTTCAAGATACTAAGGGGTTTATG 59.168 37.037 0.00 0.00 0.00 1.90
3589 3981 7.935405 TGGTTTCAAGATACTAAGGGGTTTAT 58.065 34.615 0.00 0.00 0.00 1.40
3590 3982 7.332433 TGGTTTCAAGATACTAAGGGGTTTA 57.668 36.000 0.00 0.00 0.00 2.01
3591 3983 6.208840 TGGTTTCAAGATACTAAGGGGTTT 57.791 37.500 0.00 0.00 0.00 3.27
3592 3984 5.806734 GCTGGTTTCAAGATACTAAGGGGTT 60.807 44.000 0.00 0.00 0.00 4.11
3593 3985 4.324331 GCTGGTTTCAAGATACTAAGGGGT 60.324 45.833 0.00 0.00 0.00 4.95
3594 3986 4.200092 GCTGGTTTCAAGATACTAAGGGG 58.800 47.826 0.00 0.00 0.00 4.79
3595 3987 4.200092 GGCTGGTTTCAAGATACTAAGGG 58.800 47.826 0.00 0.00 0.00 3.95
3596 3988 4.636206 GTGGCTGGTTTCAAGATACTAAGG 59.364 45.833 0.00 0.00 0.00 2.69
3597 3989 5.245531 TGTGGCTGGTTTCAAGATACTAAG 58.754 41.667 0.00 0.00 0.00 2.18
3598 3990 5.235850 TGTGGCTGGTTTCAAGATACTAA 57.764 39.130 0.00 0.00 0.00 2.24
3599 3991 4.901197 TGTGGCTGGTTTCAAGATACTA 57.099 40.909 0.00 0.00 0.00 1.82
3600 3992 3.788227 TGTGGCTGGTTTCAAGATACT 57.212 42.857 0.00 0.00 0.00 2.12
3601 3993 3.378427 GGATGTGGCTGGTTTCAAGATAC 59.622 47.826 0.00 0.00 0.00 2.24
3602 3994 3.620488 GGATGTGGCTGGTTTCAAGATA 58.380 45.455 0.00 0.00 0.00 1.98
3603 3995 2.450476 GGATGTGGCTGGTTTCAAGAT 58.550 47.619 0.00 0.00 0.00 2.40
3604 3996 1.547675 GGGATGTGGCTGGTTTCAAGA 60.548 52.381 0.00 0.00 0.00 3.02
3605 3997 0.890683 GGGATGTGGCTGGTTTCAAG 59.109 55.000 0.00 0.00 0.00 3.02
3606 3998 0.482446 AGGGATGTGGCTGGTTTCAA 59.518 50.000 0.00 0.00 0.00 2.69
3607 3999 0.038166 GAGGGATGTGGCTGGTTTCA 59.962 55.000 0.00 0.00 0.00 2.69
3608 4000 0.681243 GGAGGGATGTGGCTGGTTTC 60.681 60.000 0.00 0.00 0.00 2.78
3609 4001 1.384191 GGAGGGATGTGGCTGGTTT 59.616 57.895 0.00 0.00 0.00 3.27
3610 4002 2.616458 GGGAGGGATGTGGCTGGTT 61.616 63.158 0.00 0.00 0.00 3.67
3611 4003 3.017581 GGGAGGGATGTGGCTGGT 61.018 66.667 0.00 0.00 0.00 4.00
3612 4004 3.813724 GGGGAGGGATGTGGCTGG 61.814 72.222 0.00 0.00 0.00 4.85
3613 4005 3.813724 GGGGGAGGGATGTGGCTG 61.814 72.222 0.00 0.00 0.00 4.85
3614 4006 4.369591 TGGGGGAGGGATGTGGCT 62.370 66.667 0.00 0.00 0.00 4.75
3615 4007 4.129148 GTGGGGGAGGGATGTGGC 62.129 72.222 0.00 0.00 0.00 5.01
3616 4008 3.420482 GGTGGGGGAGGGATGTGG 61.420 72.222 0.00 0.00 0.00 4.17
3617 4009 2.286425 AGGTGGGGGAGGGATGTG 60.286 66.667 0.00 0.00 0.00 3.21
3618 4010 2.042930 GAGGTGGGGGAGGGATGT 59.957 66.667 0.00 0.00 0.00 3.06
3619 4011 1.386485 ATGAGGTGGGGGAGGGATG 60.386 63.158 0.00 0.00 0.00 3.51
3620 4012 1.073397 GATGAGGTGGGGGAGGGAT 60.073 63.158 0.00 0.00 0.00 3.85
3621 4013 2.131628 TTGATGAGGTGGGGGAGGGA 62.132 60.000 0.00 0.00 0.00 4.20
3622 4014 1.214305 TTTGATGAGGTGGGGGAGGG 61.214 60.000 0.00 0.00 0.00 4.30
3623 4015 0.704076 TTTTGATGAGGTGGGGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
3624 4016 1.075374 TGTTTTGATGAGGTGGGGGAG 59.925 52.381 0.00 0.00 0.00 4.30
3625 4017 1.075374 CTGTTTTGATGAGGTGGGGGA 59.925 52.381 0.00 0.00 0.00 4.81
3626 4018 1.203050 ACTGTTTTGATGAGGTGGGGG 60.203 52.381 0.00 0.00 0.00 5.40
3627 4019 2.162681 GACTGTTTTGATGAGGTGGGG 58.837 52.381 0.00 0.00 0.00 4.96
3628 4020 2.554032 GTGACTGTTTTGATGAGGTGGG 59.446 50.000 0.00 0.00 0.00 4.61
3629 4021 2.224079 CGTGACTGTTTTGATGAGGTGG 59.776 50.000 0.00 0.00 0.00 4.61
3630 4022 3.130633 TCGTGACTGTTTTGATGAGGTG 58.869 45.455 0.00 0.00 0.00 4.00
3631 4023 3.393800 CTCGTGACTGTTTTGATGAGGT 58.606 45.455 0.00 0.00 0.00 3.85
3632 4024 2.738846 CCTCGTGACTGTTTTGATGAGG 59.261 50.000 0.00 0.00 36.18 3.86
3633 4025 3.653344 TCCTCGTGACTGTTTTGATGAG 58.347 45.455 0.00 0.00 0.00 2.90
3634 4026 3.744238 TCCTCGTGACTGTTTTGATGA 57.256 42.857 0.00 0.00 0.00 2.92
3635 4027 6.668541 ATATTCCTCGTGACTGTTTTGATG 57.331 37.500 0.00 0.00 0.00 3.07
3636 4028 8.964476 AATATATTCCTCGTGACTGTTTTGAT 57.036 30.769 0.00 0.00 0.00 2.57
3692 4084 9.221933 CACTCTAGTTTCGGTAGATATATCACT 57.778 37.037 15.08 9.57 0.00 3.41
3693 4085 9.001542 ACACTCTAGTTTCGGTAGATATATCAC 57.998 37.037 15.08 10.27 0.00 3.06
3694 4086 9.570468 AACACTCTAGTTTCGGTAGATATATCA 57.430 33.333 15.08 0.00 0.00 2.15
3698 4090 9.583765 GAAAAACACTCTAGTTTCGGTAGATAT 57.416 33.333 0.00 0.00 40.60 1.63
3699 4091 8.800332 AGAAAAACACTCTAGTTTCGGTAGATA 58.200 33.333 0.00 0.00 40.60 1.98
3700 4092 7.668492 AGAAAAACACTCTAGTTTCGGTAGAT 58.332 34.615 0.00 0.00 40.60 1.98
3701 4093 7.047460 AGAAAAACACTCTAGTTTCGGTAGA 57.953 36.000 0.00 0.00 40.60 2.59
3702 4094 7.710766 AAGAAAAACACTCTAGTTTCGGTAG 57.289 36.000 0.00 0.00 40.60 3.18
3703 4095 7.765360 TGAAAGAAAAACACTCTAGTTTCGGTA 59.235 33.333 0.00 0.00 40.60 4.02
3704 4096 6.596497 TGAAAGAAAAACACTCTAGTTTCGGT 59.404 34.615 0.00 0.00 40.60 4.69
3705 4097 7.011828 TGAAAGAAAAACACTCTAGTTTCGG 57.988 36.000 0.00 0.00 40.60 4.30
3706 4098 8.175716 ACTTGAAAGAAAAACACTCTAGTTTCG 58.824 33.333 0.00 0.00 40.60 3.46
3707 4099 9.841880 AACTTGAAAGAAAAACACTCTAGTTTC 57.158 29.630 0.00 0.00 40.60 2.78
3709 4101 9.626045 CAAACTTGAAAGAAAAACACTCTAGTT 57.374 29.630 0.00 0.00 34.86 2.24
3710 4102 8.793592 ACAAACTTGAAAGAAAAACACTCTAGT 58.206 29.630 0.00 0.00 0.00 2.57
3711 4103 9.065871 CACAAACTTGAAAGAAAAACACTCTAG 57.934 33.333 0.00 0.00 0.00 2.43
3712 4104 8.788806 TCACAAACTTGAAAGAAAAACACTCTA 58.211 29.630 0.00 0.00 0.00 2.43
3713 4105 7.657336 TCACAAACTTGAAAGAAAAACACTCT 58.343 30.769 0.00 0.00 0.00 3.24
3714 4106 7.867445 TCACAAACTTGAAAGAAAAACACTC 57.133 32.000 0.00 0.00 0.00 3.51
3715 4107 8.831715 ATTCACAAACTTGAAAGAAAAACACT 57.168 26.923 0.00 0.00 38.95 3.55
3742 4134 8.609176 GCAACGGATTCAAAGTAGAATAATACA 58.391 33.333 0.00 0.00 38.30 2.29
3743 4135 8.609176 TGCAACGGATTCAAAGTAGAATAATAC 58.391 33.333 0.00 0.00 38.30 1.89
3744 4136 8.725405 TGCAACGGATTCAAAGTAGAATAATA 57.275 30.769 0.00 0.00 38.30 0.98
3745 4137 7.624360 TGCAACGGATTCAAAGTAGAATAAT 57.376 32.000 0.00 0.00 38.30 1.28
3746 4138 7.302524 GTTGCAACGGATTCAAAGTAGAATAA 58.697 34.615 14.90 0.00 38.30 1.40
3747 4139 6.837992 GTTGCAACGGATTCAAAGTAGAATA 58.162 36.000 14.90 0.00 38.30 1.75
3748 4140 5.699839 GTTGCAACGGATTCAAAGTAGAAT 58.300 37.500 14.90 0.00 40.75 2.40
3749 4141 5.103290 GTTGCAACGGATTCAAAGTAGAA 57.897 39.130 14.90 0.00 0.00 2.10
3750 4142 4.742438 GTTGCAACGGATTCAAAGTAGA 57.258 40.909 14.90 0.00 0.00 2.59
3772 4164 4.241999 CTAGCAATGCGCCCGTGC 62.242 66.667 16.63 16.63 44.04 5.34
3773 4165 1.922135 AAACTAGCAATGCGCCCGTG 61.922 55.000 4.18 0.53 44.04 4.94
3774 4166 1.644786 GAAACTAGCAATGCGCCCGT 61.645 55.000 4.18 0.00 44.04 5.28
3775 4167 1.062525 GAAACTAGCAATGCGCCCG 59.937 57.895 4.18 0.00 44.04 6.13
3776 4168 0.179163 GTGAAACTAGCAATGCGCCC 60.179 55.000 4.18 0.00 44.04 6.13
3777 4169 0.521291 TGTGAAACTAGCAATGCGCC 59.479 50.000 4.18 0.00 38.89 6.53
3778 4170 2.095768 TCTTGTGAAACTAGCAATGCGC 60.096 45.455 0.00 0.00 39.59 6.09
3779 4171 3.811722 TCTTGTGAAACTAGCAATGCG 57.188 42.857 0.00 0.00 39.59 4.73
3780 4172 6.385537 CATTTCTTGTGAAACTAGCAATGC 57.614 37.500 0.00 0.00 43.03 3.56
3782 4174 8.621532 TCTACATTTCTTGTGAAACTAGCAAT 57.378 30.769 0.00 0.00 43.90 3.56
3783 4175 8.445275 TTCTACATTTCTTGTGAAACTAGCAA 57.555 30.769 0.00 0.00 43.90 3.91
3784 4176 8.621532 ATTCTACATTTCTTGTGAAACTAGCA 57.378 30.769 0.00 0.00 43.90 3.49
3796 4188 9.347240 CACCATGGAATCTATTCTACATTTCTT 57.653 33.333 21.47 0.00 37.00 2.52
3810 4202 1.754803 CATTGCTGCACCATGGAATCT 59.245 47.619 21.47 0.00 0.00 2.40
3828 4220 1.452651 CGGAATCACCTGCCTGCAT 60.453 57.895 0.00 0.00 36.31 3.96
3847 4239 7.340999 TCACTGGTTTAGCATATACTGTCACTA 59.659 37.037 0.00 0.00 0.00 2.74
4108 6388 9.518906 TGTTTGATTTAGTTATATGCATTGCAG 57.481 29.630 17.52 0.00 43.65 4.41
4204 6484 1.918868 GCCCCGTTTGATGTCCGAAC 61.919 60.000 0.00 0.00 36.10 3.95
4220 6500 4.248058 CAAGATTGAATTTTGTGGAGCCC 58.752 43.478 0.68 0.00 0.00 5.19
4222 6502 4.248058 CCCAAGATTGAATTTTGTGGAGC 58.752 43.478 7.53 0.00 0.00 4.70
4242 6522 1.128188 AGGGAGTTGACACTGTCCCC 61.128 60.000 11.50 11.50 37.67 4.81
4247 6527 4.651778 TGGATTTTAGGGAGTTGACACTG 58.348 43.478 0.00 0.00 31.22 3.66
4251 6531 3.762288 GGGTTGGATTTTAGGGAGTTGAC 59.238 47.826 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.