Multiple sequence alignment - TraesCS5B01G054600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G054600 chr5B 100.000 2852 0 0 1 2852 59790479 59793330 0.000000e+00 5267.0
1 TraesCS5B01G054600 chr5B 96.275 510 19 0 2343 2852 512921176 512920667 0.000000e+00 837.0
2 TraesCS5B01G054600 chr5D 86.396 1676 137 44 658 2269 56921681 56923329 0.000000e+00 1748.0
3 TraesCS5B01G054600 chr5A 91.351 1295 83 14 673 1945 45281834 45283121 0.000000e+00 1744.0
4 TraesCS5B01G054600 chr5A 80.331 483 90 5 4 485 45281296 45281774 7.510000e-96 361.0
5 TraesCS5B01G054600 chr5A 90.476 210 16 4 2058 2263 45283194 45283403 1.010000e-69 274.0
6 TraesCS5B01G054600 chr5A 77.636 313 51 3 103 396 45279124 45279436 3.780000e-39 172.0
7 TraesCS5B01G054600 chr4B 96.304 514 19 0 2339 2852 110387562 110387049 0.000000e+00 845.0
8 TraesCS5B01G054600 chr4B 96.304 514 19 0 2339 2852 406574446 406574959 0.000000e+00 845.0
9 TraesCS5B01G054600 chr4B 95.922 515 21 0 2338 2852 483611918 483612432 0.000000e+00 835.0
10 TraesCS5B01G054600 chr4B 95.745 517 22 0 2336 2852 469186040 469185524 0.000000e+00 833.0
11 TraesCS5B01G054600 chr4B 89.231 130 6 2 517 646 516964637 516964758 3.800000e-34 156.0
12 TraesCS5B01G054600 chr3B 96.304 514 19 0 2339 2852 475700848 475701361 0.000000e+00 845.0
13 TraesCS5B01G054600 chr3B 92.969 128 9 0 517 644 495818115 495817988 1.350000e-43 187.0
14 TraesCS5B01G054600 chr3B 95.604 91 4 0 517 607 8036228 8036318 2.290000e-31 147.0
15 TraesCS5B01G054600 chr2B 96.109 514 20 0 2339 2852 566044924 566045437 0.000000e+00 839.0
16 TraesCS5B01G054600 chr2B 93.846 130 8 0 517 646 460479313 460479442 2.240000e-46 196.0
17 TraesCS5B01G054600 chr2B 92.982 57 4 0 2283 2339 628379109 628379053 1.820000e-12 84.2
18 TraesCS5B01G054600 chr7B 95.922 515 21 0 2338 2852 229571124 229570610 0.000000e+00 835.0
19 TraesCS5B01G054600 chr7B 94.531 128 7 0 517 644 707697914 707698041 6.230000e-47 198.0
20 TraesCS5B01G054600 chr1B 95.914 514 21 0 2339 2852 217191846 217191333 0.000000e+00 833.0
21 TraesCS5B01G054600 chr2A 83.571 140 13 6 517 647 699642422 699642284 3.860000e-24 122.0
22 TraesCS5B01G054600 chr7A 84.270 89 13 1 259 346 688700074 688700162 5.060000e-13 86.1
23 TraesCS5B01G054600 chr2D 97.872 47 1 0 2284 2330 564101036 564101082 6.550000e-12 82.4
24 TraesCS5B01G054600 chr2D 92.857 56 4 0 2284 2339 564119544 564119489 6.550000e-12 82.4
25 TraesCS5B01G054600 chr2D 87.500 64 7 1 2276 2339 21171312 21171250 3.940000e-09 73.1
26 TraesCS5B01G054600 chr4D 94.231 52 3 0 2282 2333 458977525 458977474 2.360000e-11 80.5
27 TraesCS5B01G054600 chr4D 91.228 57 5 0 2283 2339 128899768 128899824 8.470000e-11 78.7
28 TraesCS5B01G054600 chr3D 91.071 56 5 0 2282 2337 12151341 12151286 3.050000e-10 76.8
29 TraesCS5B01G054600 chr3D 95.745 47 2 0 2284 2330 536281238 536281284 3.050000e-10 76.8
30 TraesCS5B01G054600 chr1D 91.071 56 5 0 2284 2339 392066167 392066112 3.050000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G054600 chr5B 59790479 59793330 2851 False 5267.00 5267 100.0000 1 2852 1 chr5B.!!$F1 2851
1 TraesCS5B01G054600 chr5B 512920667 512921176 509 True 837.00 837 96.2750 2343 2852 1 chr5B.!!$R1 509
2 TraesCS5B01G054600 chr5D 56921681 56923329 1648 False 1748.00 1748 86.3960 658 2269 1 chr5D.!!$F1 1611
3 TraesCS5B01G054600 chr5A 45279124 45283403 4279 False 637.75 1744 84.9485 4 2263 4 chr5A.!!$F1 2259
4 TraesCS5B01G054600 chr4B 110387049 110387562 513 True 845.00 845 96.3040 2339 2852 1 chr4B.!!$R1 513
5 TraesCS5B01G054600 chr4B 406574446 406574959 513 False 845.00 845 96.3040 2339 2852 1 chr4B.!!$F1 513
6 TraesCS5B01G054600 chr4B 483611918 483612432 514 False 835.00 835 95.9220 2338 2852 1 chr4B.!!$F2 514
7 TraesCS5B01G054600 chr4B 469185524 469186040 516 True 833.00 833 95.7450 2336 2852 1 chr4B.!!$R2 516
8 TraesCS5B01G054600 chr3B 475700848 475701361 513 False 845.00 845 96.3040 2339 2852 1 chr3B.!!$F2 513
9 TraesCS5B01G054600 chr2B 566044924 566045437 513 False 839.00 839 96.1090 2339 2852 1 chr2B.!!$F2 513
10 TraesCS5B01G054600 chr7B 229570610 229571124 514 True 835.00 835 95.9220 2338 2852 1 chr7B.!!$R1 514
11 TraesCS5B01G054600 chr1B 217191333 217191846 513 True 833.00 833 95.9140 2339 2852 1 chr1B.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 2831 0.034186 CTAAATGGCTGGGCTGTCCA 60.034 55.0 0.0 0.0 44.79 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 4326 0.10741 TTGACTTGCGTTGAGGTGGT 60.107 50.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 2195 2.380064 TCTTTGTTGGTGGCTGGATT 57.620 45.000 0.00 0.00 0.00 3.01
37 2207 0.608035 GCTGGATTGACGGGGTTCAA 60.608 55.000 0.00 0.00 39.79 2.69
43 2213 4.735358 GACGGGGTTCAAGGGGCC 62.735 72.222 0.00 0.00 0.00 5.80
69 2239 1.679898 GTGGAGGGGACAGTTCCTG 59.320 63.158 0.00 0.00 42.38 3.86
82 2252 1.228894 TTCCTGCTCGAGGTCCACT 60.229 57.895 15.58 0.00 43.37 4.00
84 2254 0.394488 TCCTGCTCGAGGTCCACTAG 60.394 60.000 15.58 0.00 43.37 2.57
86 2256 1.304134 TGCTCGAGGTCCACTAGCA 60.304 57.895 15.58 10.84 40.68 3.49
87 2257 0.898326 TGCTCGAGGTCCACTAGCAA 60.898 55.000 15.58 0.00 40.05 3.91
94 2264 2.038557 GAGGTCCACTAGCAAAACTCCA 59.961 50.000 0.00 0.00 0.00 3.86
115 2285 2.514824 GATGCCGCCACTTCCCTC 60.515 66.667 0.00 0.00 0.00 4.30
119 2289 2.266055 CCGCCACTTCCCTCTCAC 59.734 66.667 0.00 0.00 0.00 3.51
123 2293 0.250338 GCCACTTCCCTCTCACGTTT 60.250 55.000 0.00 0.00 0.00 3.60
128 2298 1.896465 CTTCCCTCTCACGTTTCCTCT 59.104 52.381 0.00 0.00 0.00 3.69
132 2302 2.329379 CCTCTCACGTTTCCTCTTTCG 58.671 52.381 0.00 0.00 0.00 3.46
133 2303 2.288273 CCTCTCACGTTTCCTCTTTCGT 60.288 50.000 0.00 0.00 36.99 3.85
135 2305 2.359848 TCTCACGTTTCCTCTTTCGTCA 59.640 45.455 0.00 0.00 34.30 4.35
142 2312 1.546961 TCCTCTTTCGTCAGTCCCTC 58.453 55.000 0.00 0.00 0.00 4.30
143 2313 1.075698 TCCTCTTTCGTCAGTCCCTCT 59.924 52.381 0.00 0.00 0.00 3.69
144 2314 2.307980 TCCTCTTTCGTCAGTCCCTCTA 59.692 50.000 0.00 0.00 0.00 2.43
148 2318 1.030488 TTCGTCAGTCCCTCTAGGCG 61.030 60.000 0.00 0.00 34.51 5.52
188 2358 2.297129 GGAGCCAAGGACAGGAGCT 61.297 63.158 0.00 0.00 36.25 4.09
191 2361 2.596851 GCCAAGGACAGGAGCTCCA 61.597 63.158 33.90 0.00 38.89 3.86
193 2363 1.079543 CAAGGACAGGAGCTCCACG 60.080 63.158 33.90 25.44 38.89 4.94
196 2366 2.716017 GGACAGGAGCTCCACGGAG 61.716 68.421 33.90 19.19 44.56 4.63
207 2377 3.003173 CACGGAGGAGGCCAAGGA 61.003 66.667 5.01 0.00 0.00 3.36
210 2380 2.370445 CGGAGGAGGCCAAGGATGT 61.370 63.158 5.01 0.00 0.00 3.06
214 2384 0.548682 AGGAGGCCAAGGATGTGTCT 60.549 55.000 5.01 0.00 0.00 3.41
215 2385 0.393537 GGAGGCCAAGGATGTGTCTG 60.394 60.000 5.01 0.00 0.00 3.51
218 2388 0.036732 GGCCAAGGATGTGTCTGTGA 59.963 55.000 0.00 0.00 0.00 3.58
222 2392 1.048601 AAGGATGTGTCTGTGACGGT 58.951 50.000 0.00 0.00 34.95 4.83
223 2393 0.318441 AGGATGTGTCTGTGACGGTG 59.682 55.000 0.00 0.00 34.95 4.94
238 2408 3.324108 GTGGTTGGGGACGGGCTA 61.324 66.667 0.00 0.00 0.00 3.93
240 2410 2.686106 GGTTGGGGACGGGCTAGA 60.686 66.667 0.00 0.00 0.00 2.43
277 2447 1.619669 ATGGGGGAGAAGGGTGGAC 60.620 63.158 0.00 0.00 0.00 4.02
280 2450 2.657066 GGGGAGAAGGGTGGACGAC 61.657 68.421 0.00 0.00 0.00 4.34
282 2452 2.572284 GAGAAGGGTGGACGACGG 59.428 66.667 0.00 0.00 0.00 4.79
283 2453 1.975407 GAGAAGGGTGGACGACGGA 60.975 63.158 0.00 0.00 0.00 4.69
297 2467 1.658686 GACGGAGACTGCTCGGATGT 61.659 60.000 7.36 0.00 42.30 3.06
300 2470 1.323271 GGAGACTGCTCGGATGTGGA 61.323 60.000 0.00 0.00 42.25 4.02
312 2482 2.032054 CGGATGTGGAAAATGATGGACG 59.968 50.000 0.00 0.00 0.00 4.79
313 2483 2.358898 GGATGTGGAAAATGATGGACGG 59.641 50.000 0.00 0.00 0.00 4.79
316 2486 1.396996 GTGGAAAATGATGGACGGACG 59.603 52.381 0.00 0.00 0.00 4.79
317 2487 0.377203 GGAAAATGATGGACGGACGC 59.623 55.000 0.00 0.00 0.00 5.19
318 2488 1.083489 GAAAATGATGGACGGACGCA 58.917 50.000 0.00 0.00 0.00 5.24
326 2496 2.750637 GACGGACGCAGGAGGAGA 60.751 66.667 0.00 0.00 0.00 3.71
334 2504 3.465403 CAGGAGGAGAGCGGTGGG 61.465 72.222 0.00 0.00 0.00 4.61
351 2521 1.765074 GGTTTGGTGGACTAGGCCA 59.235 57.895 15.37 15.37 35.02 5.36
356 2526 2.214376 TGGTGGACTAGGCCATTTTG 57.786 50.000 23.37 0.00 40.68 2.44
360 2530 3.356290 GTGGACTAGGCCATTTTGATGT 58.644 45.455 23.37 0.00 40.68 3.06
367 2537 6.877236 ACTAGGCCATTTTGATGTAATTTGG 58.123 36.000 5.01 0.00 0.00 3.28
369 2539 4.080413 AGGCCATTTTGATGTAATTTGGGG 60.080 41.667 5.01 0.00 0.00 4.96
374 2544 6.407979 CCATTTTGATGTAATTTGGGGTAGGG 60.408 42.308 0.00 0.00 0.00 3.53
394 2564 3.819902 GGGTCCACCTATCTAGTTAGACG 59.180 52.174 9.09 0.88 33.60 4.18
399 2569 4.880120 CCACCTATCTAGTTAGACGTGACA 59.120 45.833 14.18 0.00 34.72 3.58
402 2572 6.483974 CACCTATCTAGTTAGACGTGACAGAT 59.516 42.308 9.09 3.67 34.72 2.90
405 2575 2.264109 AGTTAGACGTGACAGATGCG 57.736 50.000 0.00 0.00 0.00 4.73
406 2576 1.540267 AGTTAGACGTGACAGATGCGT 59.460 47.619 0.00 0.00 41.81 5.24
408 2578 3.768632 GACGTGACAGATGCGTCC 58.231 61.111 1.23 0.00 46.18 4.79
409 2579 1.080772 GACGTGACAGATGCGTCCA 60.081 57.895 1.23 0.00 46.18 4.02
410 2580 0.458543 GACGTGACAGATGCGTCCAT 60.459 55.000 1.23 0.00 46.18 3.41
415 2585 0.745845 GACAGATGCGTCCATGCCTT 60.746 55.000 1.23 0.00 0.00 4.35
421 2591 1.223487 GCGTCCATGCCTTCCCTTA 59.777 57.895 0.00 0.00 0.00 2.69
427 2597 1.597742 CATGCCTTCCCTTATCCGTG 58.402 55.000 0.00 0.00 0.00 4.94
435 2605 3.644966 TCCCTTATCCGTGCAGATTTT 57.355 42.857 0.00 0.00 0.00 1.82
437 2607 2.358898 CCCTTATCCGTGCAGATTTTGG 59.641 50.000 0.00 0.00 0.00 3.28
440 2610 1.549203 ATCCGTGCAGATTTTGGCTT 58.451 45.000 0.00 0.00 0.00 4.35
441 2611 1.327303 TCCGTGCAGATTTTGGCTTT 58.673 45.000 0.00 0.00 0.00 3.51
443 2613 2.227865 TCCGTGCAGATTTTGGCTTTAC 59.772 45.455 0.00 0.00 0.00 2.01
444 2614 2.595386 CGTGCAGATTTTGGCTTTACC 58.405 47.619 0.00 0.00 39.84 2.85
445 2615 2.671070 CGTGCAGATTTTGGCTTTACCC 60.671 50.000 0.00 0.00 37.83 3.69
452 2622 2.122783 TTTGGCTTTACCCGAGGATG 57.877 50.000 0.00 0.00 37.83 3.51
453 2623 0.393808 TTGGCTTTACCCGAGGATGC 60.394 55.000 0.00 0.00 37.83 3.91
455 2625 1.527370 GCTTTACCCGAGGATGCCT 59.473 57.895 0.00 0.00 36.03 4.75
458 2628 1.760613 CTTTACCCGAGGATGCCTGTA 59.239 52.381 0.00 0.00 31.76 2.74
465 2635 0.255890 GAGGATGCCTGTAAGCCCAA 59.744 55.000 0.00 0.00 31.76 4.12
468 2638 1.410083 GGATGCCTGTAAGCCCAATCA 60.410 52.381 0.00 0.00 0.00 2.57
471 2641 2.818921 TGCCTGTAAGCCCAATCATTT 58.181 42.857 0.00 0.00 0.00 2.32
473 2643 3.953612 TGCCTGTAAGCCCAATCATTTAG 59.046 43.478 0.00 0.00 0.00 1.85
503 2673 3.490890 GAGCATGTCTTGGTCGCC 58.509 61.111 2.55 0.00 42.51 5.54
525 2695 2.810439 TTTTTCATCGGCCTGTTTGG 57.190 45.000 0.00 0.00 39.35 3.28
526 2696 1.698506 TTTTCATCGGCCTGTTTGGT 58.301 45.000 0.00 0.00 38.35 3.67
527 2697 1.698506 TTTCATCGGCCTGTTTGGTT 58.301 45.000 0.00 0.00 38.35 3.67
528 2698 1.243902 TTCATCGGCCTGTTTGGTTC 58.756 50.000 0.00 0.00 38.35 3.62
530 2700 0.609131 CATCGGCCTGTTTGGTTCCT 60.609 55.000 0.00 0.00 38.35 3.36
531 2701 0.322546 ATCGGCCTGTTTGGTTCCTC 60.323 55.000 0.00 0.00 38.35 3.71
537 2707 0.035458 CTGTTTGGTTCCTCTCCGCT 59.965 55.000 0.00 0.00 0.00 5.52
539 2709 0.673956 GTTTGGTTCCTCTCCGCTCC 60.674 60.000 0.00 0.00 0.00 4.70
540 2710 0.836400 TTTGGTTCCTCTCCGCTCCT 60.836 55.000 0.00 0.00 0.00 3.69
541 2711 1.258445 TTGGTTCCTCTCCGCTCCTC 61.258 60.000 0.00 0.00 0.00 3.71
542 2712 1.380650 GGTTCCTCTCCGCTCCTCT 60.381 63.158 0.00 0.00 0.00 3.69
543 2713 1.671901 GGTTCCTCTCCGCTCCTCTG 61.672 65.000 0.00 0.00 0.00 3.35
544 2714 0.681564 GTTCCTCTCCGCTCCTCTGA 60.682 60.000 0.00 0.00 0.00 3.27
545 2715 0.681564 TTCCTCTCCGCTCCTCTGAC 60.682 60.000 0.00 0.00 0.00 3.51
546 2716 1.077068 CCTCTCCGCTCCTCTGACT 60.077 63.158 0.00 0.00 0.00 3.41
547 2717 0.682855 CCTCTCCGCTCCTCTGACTT 60.683 60.000 0.00 0.00 0.00 3.01
548 2718 0.738389 CTCTCCGCTCCTCTGACTTC 59.262 60.000 0.00 0.00 0.00 3.01
549 2719 1.027255 TCTCCGCTCCTCTGACTTCG 61.027 60.000 0.00 0.00 0.00 3.79
550 2720 2.202676 CCGCTCCTCTGACTTCGC 60.203 66.667 0.00 0.00 0.00 4.70
551 2721 2.705821 CCGCTCCTCTGACTTCGCT 61.706 63.158 0.00 0.00 0.00 4.93
552 2722 1.226547 CGCTCCTCTGACTTCGCTC 60.227 63.158 0.00 0.00 0.00 5.03
553 2723 1.140804 GCTCCTCTGACTTCGCTCC 59.859 63.158 0.00 0.00 0.00 4.70
554 2724 1.813192 CTCCTCTGACTTCGCTCCC 59.187 63.158 0.00 0.00 0.00 4.30
555 2725 1.999071 CTCCTCTGACTTCGCTCCCG 61.999 65.000 0.00 0.00 0.00 5.14
556 2726 2.492090 CTCTGACTTCGCTCCCGG 59.508 66.667 0.00 0.00 34.56 5.73
557 2727 2.035155 TCTGACTTCGCTCCCGGA 59.965 61.111 0.73 0.00 34.56 5.14
558 2728 1.999071 CTCTGACTTCGCTCCCGGAG 61.999 65.000 10.41 10.41 45.75 4.63
571 2741 4.208686 CGGAGCGGACCAGCCTAC 62.209 72.222 4.93 0.00 38.01 3.18
572 2742 3.075005 GGAGCGGACCAGCCTACA 61.075 66.667 4.93 0.00 38.01 2.74
573 2743 2.496817 GAGCGGACCAGCCTACAG 59.503 66.667 4.93 0.00 38.01 2.74
574 2744 3.724914 GAGCGGACCAGCCTACAGC 62.725 68.421 4.93 0.00 44.25 4.40
586 2756 3.675467 GCCTACAGCTTATTTTGACGG 57.325 47.619 0.00 0.00 38.99 4.79
587 2757 3.267483 GCCTACAGCTTATTTTGACGGA 58.733 45.455 0.00 0.00 38.99 4.69
588 2758 3.309954 GCCTACAGCTTATTTTGACGGAG 59.690 47.826 0.00 0.00 38.99 4.63
589 2759 3.309954 CCTACAGCTTATTTTGACGGAGC 59.690 47.826 0.00 0.00 0.00 4.70
590 2760 2.778299 ACAGCTTATTTTGACGGAGCA 58.222 42.857 0.00 0.00 35.86 4.26
591 2761 2.744202 ACAGCTTATTTTGACGGAGCAG 59.256 45.455 0.00 0.00 35.86 4.24
592 2762 1.740025 AGCTTATTTTGACGGAGCAGC 59.260 47.619 0.00 0.00 35.86 5.25
593 2763 1.529826 GCTTATTTTGACGGAGCAGCG 60.530 52.381 0.00 0.00 33.68 5.18
594 2764 1.999735 CTTATTTTGACGGAGCAGCGA 59.000 47.619 0.00 0.00 0.00 4.93
595 2765 2.087501 TATTTTGACGGAGCAGCGAA 57.912 45.000 0.00 0.00 0.00 4.70
596 2766 1.234821 ATTTTGACGGAGCAGCGAAA 58.765 45.000 0.00 0.00 0.00 3.46
597 2767 1.018148 TTTTGACGGAGCAGCGAAAA 58.982 45.000 0.00 0.00 0.00 2.29
598 2768 0.306533 TTTGACGGAGCAGCGAAAAC 59.693 50.000 0.00 0.00 0.00 2.43
599 2769 1.503818 TTGACGGAGCAGCGAAAACC 61.504 55.000 0.00 0.00 0.00 3.27
600 2770 2.668550 ACGGAGCAGCGAAAACCC 60.669 61.111 0.00 0.00 0.00 4.11
601 2771 2.668212 CGGAGCAGCGAAAACCCA 60.668 61.111 0.00 0.00 0.00 4.51
602 2772 2.680913 CGGAGCAGCGAAAACCCAG 61.681 63.158 0.00 0.00 0.00 4.45
603 2773 2.563427 GAGCAGCGAAAACCCAGC 59.437 61.111 0.00 0.00 0.00 4.85
604 2774 1.968540 GAGCAGCGAAAACCCAGCT 60.969 57.895 0.00 0.00 42.64 4.24
605 2775 1.916697 GAGCAGCGAAAACCCAGCTC 61.917 60.000 0.00 0.00 39.48 4.09
606 2776 2.982744 GCAGCGAAAACCCAGCTCC 61.983 63.158 0.00 0.00 39.48 4.70
607 2777 2.034221 AGCGAAAACCCAGCTCCC 59.966 61.111 0.00 0.00 36.33 4.30
608 2778 3.062466 GCGAAAACCCAGCTCCCC 61.062 66.667 0.00 0.00 0.00 4.81
609 2779 2.434331 CGAAAACCCAGCTCCCCA 59.566 61.111 0.00 0.00 0.00 4.96
610 2780 1.675641 CGAAAACCCAGCTCCCCAG 60.676 63.158 0.00 0.00 0.00 4.45
619 2789 3.092511 GCTCCCCAGCTCCATGGA 61.093 66.667 15.27 15.27 43.57 3.41
620 2790 3.117452 GCTCCCCAGCTCCATGGAG 62.117 68.421 33.73 33.73 45.83 3.86
631 2801 1.621992 TCCATGGAGCGGAGAGATAC 58.378 55.000 11.44 0.00 0.00 2.24
632 2802 0.605589 CCATGGAGCGGAGAGATACC 59.394 60.000 5.56 0.00 0.00 2.73
633 2803 1.332195 CATGGAGCGGAGAGATACCA 58.668 55.000 0.00 0.00 0.00 3.25
634 2804 1.688735 CATGGAGCGGAGAGATACCAA 59.311 52.381 0.00 0.00 0.00 3.67
635 2805 1.860641 TGGAGCGGAGAGATACCAAA 58.139 50.000 0.00 0.00 0.00 3.28
636 2806 1.480954 TGGAGCGGAGAGATACCAAAC 59.519 52.381 0.00 0.00 0.00 2.93
637 2807 1.480954 GGAGCGGAGAGATACCAAACA 59.519 52.381 0.00 0.00 0.00 2.83
638 2808 2.482142 GGAGCGGAGAGATACCAAACAG 60.482 54.545 0.00 0.00 0.00 3.16
639 2809 1.482593 AGCGGAGAGATACCAAACAGG 59.517 52.381 0.00 0.00 45.67 4.00
640 2810 1.473434 GCGGAGAGATACCAAACAGGG 60.473 57.143 0.00 0.00 43.89 4.45
641 2811 1.473434 CGGAGAGATACCAAACAGGGC 60.473 57.143 0.00 0.00 43.89 5.19
642 2812 1.134068 GGAGAGATACCAAACAGGGCC 60.134 57.143 0.00 0.00 43.89 5.80
643 2813 1.840635 GAGAGATACCAAACAGGGCCT 59.159 52.381 0.00 0.00 43.89 5.19
644 2814 3.039011 GAGAGATACCAAACAGGGCCTA 58.961 50.000 5.28 0.00 43.89 3.93
645 2815 3.454812 GAGAGATACCAAACAGGGCCTAA 59.545 47.826 5.28 0.00 43.89 2.69
646 2816 3.850173 AGAGATACCAAACAGGGCCTAAA 59.150 43.478 5.28 0.00 43.89 1.85
647 2817 4.478686 AGAGATACCAAACAGGGCCTAAAT 59.521 41.667 5.28 0.00 43.89 1.40
648 2818 4.536765 AGATACCAAACAGGGCCTAAATG 58.463 43.478 5.28 5.10 43.89 2.32
649 2819 1.937191 ACCAAACAGGGCCTAAATGG 58.063 50.000 22.34 22.34 43.89 3.16
659 2829 2.799176 CCTAAATGGCTGGGCTGTC 58.201 57.895 0.00 0.00 0.00 3.51
660 2830 0.753111 CCTAAATGGCTGGGCTGTCC 60.753 60.000 0.00 0.00 0.00 4.02
661 2831 0.034186 CTAAATGGCTGGGCTGTCCA 60.034 55.000 0.00 0.00 44.79 4.02
662 2832 0.323360 TAAATGGCTGGGCTGTCCAC 60.323 55.000 0.00 0.00 41.46 4.02
663 2833 3.590466 AATGGCTGGGCTGTCCACC 62.590 63.158 0.00 4.89 41.46 4.61
713 2885 2.879826 ACAAGCAAACAAGACAAGCAC 58.120 42.857 0.00 0.00 0.00 4.40
735 2915 0.373370 GCGTCATGCGTGCATAGAAA 59.627 50.000 7.07 0.00 43.66 2.52
791 2971 4.903649 TGGATGAGAGGAAAGATATGCTCA 59.096 41.667 0.00 0.00 39.96 4.26
814 2994 6.663523 TCAAGGTTCTTTTGAAGGAAAACTCT 59.336 34.615 0.00 0.00 39.39 3.24
901 3085 6.406370 TCATCGTCCATATCCAATTATCCAC 58.594 40.000 0.00 0.00 0.00 4.02
909 3094 6.886459 CCATATCCAATTATCCACCAACTAGG 59.114 42.308 0.00 0.00 45.67 3.02
930 3115 0.960364 GTTCGGTGGACACATGCCAT 60.960 55.000 4.69 0.00 37.81 4.40
946 3131 1.293963 CCATGACAGTGACAGTGCCG 61.294 60.000 10.29 0.00 0.00 5.69
949 3134 1.289066 GACAGTGACAGTGCCGCTA 59.711 57.895 10.29 0.00 0.00 4.26
979 3164 1.306148 AGATGCACATGAATCCGCAG 58.694 50.000 0.00 0.00 37.88 5.18
1009 3198 6.746364 GGAGGACGTACTATATATGAAAAGCG 59.254 42.308 0.00 0.00 0.00 4.68
1015 3204 5.161943 ACTATATATGAAAAGCGGACCCC 57.838 43.478 0.00 0.00 0.00 4.95
1027 3216 1.077716 GGACCCCCAGCACACATAC 60.078 63.158 0.00 0.00 0.00 2.39
1037 3253 0.110238 GCACACATACACACGCAAGG 60.110 55.000 0.00 0.00 46.39 3.61
1118 3339 2.158325 AGATTGGTTTGCCTTCCCTTCA 60.158 45.455 0.00 0.00 35.27 3.02
1119 3340 2.166907 TTGGTTTGCCTTCCCTTCAA 57.833 45.000 0.00 0.00 35.27 2.69
1137 3358 2.135933 CAACGTTCTCTGACAAGGTCC 58.864 52.381 0.00 0.00 0.00 4.46
1138 3359 1.410004 ACGTTCTCTGACAAGGTCCA 58.590 50.000 0.00 0.00 0.00 4.02
1168 3389 5.970592 TCTGATACTCAGGTTGTGATCTTG 58.029 41.667 4.43 0.00 44.39 3.02
1185 3406 1.920574 CTTGTAATGACGGAGCTGACG 59.079 52.381 0.00 0.00 37.36 4.35
1186 3407 0.172578 TGTAATGACGGAGCTGACGG 59.827 55.000 11.55 0.00 35.23 4.79
1188 3409 1.135199 GTAATGACGGAGCTGACGGAA 60.135 52.381 11.55 0.59 35.23 4.30
1195 3416 1.336887 CGGAGCTGACGGAAGAGAAAA 60.337 52.381 0.00 0.00 0.00 2.29
1196 3417 2.070028 GGAGCTGACGGAAGAGAAAAC 58.930 52.381 0.00 0.00 0.00 2.43
1198 3419 1.694696 AGCTGACGGAAGAGAAAACCT 59.305 47.619 0.00 0.00 0.00 3.50
1202 3423 0.765510 ACGGAAGAGAAAACCTGGCT 59.234 50.000 0.00 0.00 0.00 4.75
1222 3443 2.986306 GCCGACAAGCTGCAGCATT 61.986 57.895 38.24 25.64 45.16 3.56
1235 3456 1.018910 CAGCATTGCATCGGTGATGA 58.981 50.000 11.91 0.00 42.09 2.92
1240 3461 2.696989 TTGCATCGGTGATGACATCT 57.303 45.000 16.25 0.00 42.09 2.90
1248 3469 2.357952 CGGTGATGACATCTTCGGAGTA 59.642 50.000 16.25 0.00 0.00 2.59
1253 3474 3.081710 TGACATCTTCGGAGTACCTGA 57.918 47.619 0.00 0.00 0.00 3.86
1509 3733 3.478274 GGAGGCAGAGGAGGCAGG 61.478 72.222 0.00 0.00 36.37 4.85
1512 3736 3.334054 GGCAGAGGAGGCAGGGTT 61.334 66.667 0.00 0.00 0.00 4.11
1528 3752 0.604511 GGTTTGTCAGGTACCCCGTG 60.605 60.000 8.74 0.00 35.12 4.94
1531 3755 1.474332 TTGTCAGGTACCCCGTGGTC 61.474 60.000 8.74 0.00 43.06 4.02
1532 3756 1.608627 GTCAGGTACCCCGTGGTCT 60.609 63.158 8.74 0.00 43.06 3.85
1574 3798 4.069232 CGTGGAGCGCCTTCAGGA 62.069 66.667 8.34 0.00 37.39 3.86
1917 4150 6.591062 ACATGAGCGTTGCATTTTCATTAAAT 59.409 30.769 0.00 0.00 36.90 1.40
1970 4203 7.905604 TTTTCGAGGGATACATATTAGCATG 57.094 36.000 0.00 0.00 39.74 4.06
1971 4204 6.605471 TTCGAGGGATACATATTAGCATGT 57.395 37.500 0.00 0.00 41.88 3.21
1972 4205 6.605471 TCGAGGGATACATATTAGCATGTT 57.395 37.500 0.00 0.00 39.77 2.71
2007 4240 2.103432 ACCGGAAAACCCCAATGAAAAC 59.897 45.455 9.46 0.00 0.00 2.43
2011 4244 4.819088 CGGAAAACCCCAATGAAAACAATT 59.181 37.500 0.00 0.00 0.00 2.32
2012 4245 5.992217 CGGAAAACCCCAATGAAAACAATTA 59.008 36.000 0.00 0.00 0.00 1.40
2031 4278 6.879458 ACAATTACCGTTTTGAATAGCTCTCT 59.121 34.615 0.00 0.00 0.00 3.10
2037 4284 4.264145 CGTTTTGAATAGCTCTCTGTCGAG 59.736 45.833 0.00 0.00 38.67 4.04
2070 4317 1.760268 CTGCGCAATCTCCTCGAAGC 61.760 60.000 13.05 0.00 0.00 3.86
2119 4369 1.885233 TCTCATGCCGTTGAAAATGCA 59.115 42.857 0.00 0.00 40.02 3.96
2121 4371 3.693578 TCTCATGCCGTTGAAAATGCATA 59.306 39.130 0.00 0.00 42.68 3.14
2124 4374 1.135141 TGCCGTTGAAAATGCATAGGC 60.135 47.619 0.00 7.47 39.56 3.93
2130 4380 4.795278 CGTTGAAAATGCATAGGCTTCTTC 59.205 41.667 0.00 0.00 41.91 2.87
2131 4381 5.392380 CGTTGAAAATGCATAGGCTTCTTCT 60.392 40.000 0.00 0.00 41.91 2.85
2153 4405 5.477637 TCTTTTCAGGCATTTCACATGATGA 59.522 36.000 0.00 0.00 34.65 2.92
2214 4466 2.092914 CGTTATCTTTGAGCCCTCCCTT 60.093 50.000 0.00 0.00 0.00 3.95
2223 4475 3.083997 CCCTCCCTTCCTCCCACG 61.084 72.222 0.00 0.00 0.00 4.94
2245 4497 4.141711 CGAGGAGTCAATTGAGGGGAATTA 60.142 45.833 8.80 0.00 0.00 1.40
2247 4499 5.510430 AGGAGTCAATTGAGGGGAATTAAC 58.490 41.667 8.80 0.00 0.00 2.01
2272 4524 2.598394 GCCAAAGGCTGAGCACCA 60.598 61.111 6.82 0.00 46.69 4.17
2273 4525 2.633509 GCCAAAGGCTGAGCACCAG 61.634 63.158 6.82 2.18 46.69 4.00
2274 4526 1.073722 CCAAAGGCTGAGCACCAGA 59.926 57.895 6.82 0.00 45.78 3.86
2278 4530 2.673523 GGCTGAGCACCAGACCAT 59.326 61.111 6.82 0.00 45.42 3.55
2279 4531 1.748122 GGCTGAGCACCAGACCATG 60.748 63.158 6.82 0.00 45.42 3.66
2280 4532 1.297689 GCTGAGCACCAGACCATGA 59.702 57.895 0.00 0.00 45.78 3.07
2281 4533 0.321919 GCTGAGCACCAGACCATGAA 60.322 55.000 0.00 0.00 45.78 2.57
2282 4534 1.446907 CTGAGCACCAGACCATGAAC 58.553 55.000 0.00 0.00 45.78 3.18
2283 4535 0.320683 TGAGCACCAGACCATGAACG 60.321 55.000 0.00 0.00 0.00 3.95
2284 4536 1.003355 AGCACCAGACCATGAACGG 60.003 57.895 0.00 0.00 0.00 4.44
2285 4537 2.690778 GCACCAGACCATGAACGGC 61.691 63.158 0.00 0.00 0.00 5.68
2286 4538 1.302431 CACCAGACCATGAACGGCA 60.302 57.895 0.00 0.00 0.00 5.69
2287 4539 0.888736 CACCAGACCATGAACGGCAA 60.889 55.000 0.00 0.00 0.00 4.52
2288 4540 0.179004 ACCAGACCATGAACGGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
2289 4541 0.958091 CCAGACCATGAACGGCAAAA 59.042 50.000 0.00 0.00 0.00 2.44
2290 4542 1.545582 CCAGACCATGAACGGCAAAAT 59.454 47.619 0.00 0.00 0.00 1.82
2291 4543 2.029110 CCAGACCATGAACGGCAAAATT 60.029 45.455 0.00 0.00 0.00 1.82
2292 4544 3.554752 CCAGACCATGAACGGCAAAATTT 60.555 43.478 0.00 0.00 0.00 1.82
2293 4545 3.674753 CAGACCATGAACGGCAAAATTTC 59.325 43.478 0.00 0.00 0.00 2.17
2294 4546 2.661195 GACCATGAACGGCAAAATTTCG 59.339 45.455 0.00 0.00 0.00 3.46
2295 4547 2.035321 ACCATGAACGGCAAAATTTCGT 59.965 40.909 0.00 0.00 38.89 3.85
2296 4548 2.408032 CCATGAACGGCAAAATTTCGTG 59.592 45.455 4.41 0.00 37.20 4.35
2297 4549 2.853731 TGAACGGCAAAATTTCGTGT 57.146 40.000 4.41 0.00 37.20 4.49
2298 4550 3.152261 TGAACGGCAAAATTTCGTGTT 57.848 38.095 4.41 1.87 37.20 3.32
2299 4551 3.512680 TGAACGGCAAAATTTCGTGTTT 58.487 36.364 4.41 0.00 37.20 2.83
2300 4552 3.927142 TGAACGGCAAAATTTCGTGTTTT 59.073 34.783 4.41 0.00 37.20 2.43
2301 4553 3.916405 ACGGCAAAATTTCGTGTTTTG 57.084 38.095 14.02 14.02 45.01 2.44
2302 4554 3.512680 ACGGCAAAATTTCGTGTTTTGA 58.487 36.364 19.19 0.00 45.02 2.69
2303 4555 3.304826 ACGGCAAAATTTCGTGTTTTGAC 59.695 39.130 19.19 16.78 46.27 3.18
2304 4556 3.302156 CGGCAAAATTTCGTGTTTTGACC 60.302 43.478 19.19 17.44 46.77 4.02
2305 4557 3.001838 GGCAAAATTTCGTGTTTTGACCC 59.998 43.478 19.19 11.78 44.81 4.46
2306 4558 3.868661 GCAAAATTTCGTGTTTTGACCCT 59.131 39.130 19.19 0.00 45.02 4.34
2307 4559 4.331443 GCAAAATTTCGTGTTTTGACCCTT 59.669 37.500 19.19 0.00 45.02 3.95
2308 4560 5.163804 GCAAAATTTCGTGTTTTGACCCTTT 60.164 36.000 19.19 0.00 45.02 3.11
2309 4561 6.621812 GCAAAATTTCGTGTTTTGACCCTTTT 60.622 34.615 19.19 0.00 45.02 2.27
2310 4562 6.656314 AAATTTCGTGTTTTGACCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
2311 4563 4.785511 TTTCGTGTTTTGACCCTTTTCA 57.214 36.364 0.00 0.00 0.00 2.69
2312 4564 3.768468 TCGTGTTTTGACCCTTTTCAC 57.232 42.857 0.00 0.00 0.00 3.18
2313 4565 2.096174 TCGTGTTTTGACCCTTTTCACG 59.904 45.455 8.19 8.19 45.10 4.35
2314 4566 2.159490 CGTGTTTTGACCCTTTTCACGT 60.159 45.455 0.00 0.00 41.01 4.49
2315 4567 3.063725 CGTGTTTTGACCCTTTTCACGTA 59.936 43.478 0.00 0.00 41.01 3.57
2316 4568 4.260866 CGTGTTTTGACCCTTTTCACGTAT 60.261 41.667 0.00 0.00 41.01 3.06
2317 4569 5.050227 CGTGTTTTGACCCTTTTCACGTATA 60.050 40.000 0.00 0.00 41.01 1.47
2318 4570 6.511444 CGTGTTTTGACCCTTTTCACGTATAA 60.511 38.462 0.00 0.00 41.01 0.98
2319 4571 7.194962 GTGTTTTGACCCTTTTCACGTATAAA 58.805 34.615 0.00 0.00 0.00 1.40
2320 4572 7.701501 GTGTTTTGACCCTTTTCACGTATAAAA 59.298 33.333 7.52 7.52 0.00 1.52
2321 4573 8.414778 TGTTTTGACCCTTTTCACGTATAAAAT 58.585 29.630 8.05 0.00 0.00 1.82
2322 4574 8.908678 GTTTTGACCCTTTTCACGTATAAAATC 58.091 33.333 8.05 5.08 0.00 2.17
2323 4575 6.411630 TGACCCTTTTCACGTATAAAATCG 57.588 37.500 8.05 5.03 0.00 3.34
2324 4576 6.164876 TGACCCTTTTCACGTATAAAATCGA 58.835 36.000 8.05 0.00 0.00 3.59
2325 4577 6.311935 TGACCCTTTTCACGTATAAAATCGAG 59.688 38.462 8.05 0.00 0.00 4.04
2326 4578 6.168389 ACCCTTTTCACGTATAAAATCGAGT 58.832 36.000 8.05 0.00 0.00 4.18
2327 4579 6.652062 ACCCTTTTCACGTATAAAATCGAGTT 59.348 34.615 8.05 0.00 0.00 3.01
2328 4580 7.148523 ACCCTTTTCACGTATAAAATCGAGTTC 60.149 37.037 0.00 0.00 0.00 3.01
2329 4581 7.064253 CCCTTTTCACGTATAAAATCGAGTTCT 59.936 37.037 0.00 0.00 0.00 3.01
2330 4582 9.079833 CCTTTTCACGTATAAAATCGAGTTCTA 57.920 33.333 0.00 0.00 0.00 2.10
2333 4585 9.630098 TTTCACGTATAAAATCGAGTTCTAACT 57.370 29.630 0.00 0.00 43.16 2.24
2334 4586 9.630098 TTCACGTATAAAATCGAGTTCTAACTT 57.370 29.630 0.00 0.00 39.88 2.66
2341 4593 6.449448 AAATCGAGTTCTAACTTCGTTGAC 57.551 37.500 0.00 0.00 39.88 3.18
2497 4749 4.948004 TGGCGATACGGATATGTAGATCTT 59.052 41.667 0.00 0.00 0.00 2.40
2513 4765 5.277857 AGATCTTCTACCATTGTAACCGG 57.722 43.478 0.00 0.00 0.00 5.28
2516 4768 4.025360 TCTTCTACCATTGTAACCGGCTA 58.975 43.478 0.00 0.00 0.00 3.93
2601 4853 6.500589 ACAACAATCATACCATAGGCTAGT 57.499 37.500 0.00 0.00 0.00 2.57
2692 4944 3.262405 TCAAGCAGGACGTAGGGTTTTAT 59.738 43.478 0.00 0.00 0.00 1.40
2787 5039 0.835543 TTCGAAACCCCCTACCCGAA 60.836 55.000 0.00 0.00 34.30 4.30
2803 5055 0.450184 CGAAATCCGCCGGTTTTGAT 59.550 50.000 16.36 0.00 0.00 2.57
2830 5082 3.057033 ACATTGGTGCTTTCATTGAGAGC 60.057 43.478 19.43 19.43 39.74 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.734388 GCCACCAACAAAGAAGGCGT 61.734 55.000 0.00 0.00 31.88 5.68
5 6 2.364970 CAATCCAGCCACCAACAAAGAA 59.635 45.455 0.00 0.00 0.00 2.52
6 7 1.962807 CAATCCAGCCACCAACAAAGA 59.037 47.619 0.00 0.00 0.00 2.52
7 8 1.962807 TCAATCCAGCCACCAACAAAG 59.037 47.619 0.00 0.00 0.00 2.77
9 10 1.327303 GTCAATCCAGCCACCAACAA 58.673 50.000 0.00 0.00 0.00 2.83
16 2186 2.478335 GAACCCCGTCAATCCAGCCA 62.478 60.000 0.00 0.00 0.00 4.75
25 2195 3.961414 GCCCCTTGAACCCCGTCA 61.961 66.667 0.00 0.00 0.00 4.35
69 2239 0.246635 TTTGCTAGTGGACCTCGAGC 59.753 55.000 18.48 18.48 34.91 5.03
82 2252 1.401552 GCATCGCATGGAGTTTTGCTA 59.598 47.619 0.00 0.00 36.71 3.49
84 2254 0.803380 GGCATCGCATGGAGTTTTGC 60.803 55.000 0.00 0.00 35.50 3.68
86 2256 1.802636 CGGCATCGCATGGAGTTTT 59.197 52.632 0.00 0.00 0.00 2.43
87 2257 3.501396 CGGCATCGCATGGAGTTT 58.499 55.556 0.00 0.00 0.00 2.66
105 2275 1.608283 GGAAACGTGAGAGGGAAGTGG 60.608 57.143 0.00 0.00 0.00 4.00
106 2276 1.344763 AGGAAACGTGAGAGGGAAGTG 59.655 52.381 0.00 0.00 0.00 3.16
107 2277 1.619332 GAGGAAACGTGAGAGGGAAGT 59.381 52.381 0.00 0.00 0.00 3.01
110 2280 2.011122 AAGAGGAAACGTGAGAGGGA 57.989 50.000 0.00 0.00 0.00 4.20
115 2285 2.726760 CTGACGAAAGAGGAAACGTGAG 59.273 50.000 0.00 0.00 39.04 3.51
119 2289 2.059541 GGACTGACGAAAGAGGAAACG 58.940 52.381 0.00 0.00 0.00 3.60
123 2293 1.075698 AGAGGGACTGACGAAAGAGGA 59.924 52.381 0.00 0.00 41.55 3.71
128 2298 1.183549 GCCTAGAGGGACTGACGAAA 58.816 55.000 0.00 0.00 41.55 3.46
132 2302 0.671251 CATCGCCTAGAGGGACTGAC 59.329 60.000 0.00 0.00 41.55 3.51
133 2303 0.259065 ACATCGCCTAGAGGGACTGA 59.741 55.000 0.00 0.00 41.55 3.41
142 2312 1.300233 GCCGGAGAACATCGCCTAG 60.300 63.158 5.05 0.00 33.90 3.02
143 2313 1.327690 AAGCCGGAGAACATCGCCTA 61.328 55.000 5.05 0.00 33.90 3.93
144 2314 2.660064 AAGCCGGAGAACATCGCCT 61.660 57.895 5.05 0.00 33.90 5.52
148 2318 1.372087 CCTGCAAGCCGGAGAACATC 61.372 60.000 5.05 0.00 34.28 3.06
188 2358 3.003173 CTTGGCCTCCTCCGTGGA 61.003 66.667 3.32 0.00 43.86 4.02
191 2361 2.041265 ATCCTTGGCCTCCTCCGT 59.959 61.111 3.32 0.00 0.00 4.69
193 2363 1.225704 CACATCCTTGGCCTCCTCC 59.774 63.158 3.32 0.00 0.00 4.30
196 2366 0.393537 CAGACACATCCTTGGCCTCC 60.394 60.000 3.32 0.00 0.00 4.30
203 2373 1.048601 ACCGTCACAGACACATCCTT 58.951 50.000 0.00 0.00 32.09 3.36
207 2377 0.468226 AACCACCGTCACAGACACAT 59.532 50.000 0.00 0.00 32.09 3.21
210 2380 1.145156 CCAACCACCGTCACAGACA 59.855 57.895 0.00 0.00 32.09 3.41
214 2384 2.768769 TCCCCAACCACCGTCACA 60.769 61.111 0.00 0.00 0.00 3.58
215 2385 2.281276 GTCCCCAACCACCGTCAC 60.281 66.667 0.00 0.00 0.00 3.67
222 2392 3.006728 CTAGCCCGTCCCCAACCA 61.007 66.667 0.00 0.00 0.00 3.67
223 2393 2.686106 TCTAGCCCGTCCCCAACC 60.686 66.667 0.00 0.00 0.00 3.77
238 2408 3.227276 CCGCCCTAGATGCCGTCT 61.227 66.667 0.00 0.00 41.11 4.18
243 2413 1.670406 CATCTGCCGCCCTAGATGC 60.670 63.158 6.32 0.00 42.48 3.91
253 2423 2.507944 CTTCTCCCCCATCTGCCG 59.492 66.667 0.00 0.00 0.00 5.69
277 2447 2.473760 ATCCGAGCAGTCTCCGTCG 61.474 63.158 0.00 0.00 35.94 5.12
280 2450 1.226802 CACATCCGAGCAGTCTCCG 60.227 63.158 0.00 0.00 35.94 4.63
282 2452 0.532573 TTCCACATCCGAGCAGTCTC 59.467 55.000 0.00 0.00 35.99 3.36
283 2453 0.976641 TTTCCACATCCGAGCAGTCT 59.023 50.000 0.00 0.00 0.00 3.24
297 2467 1.732941 CGTCCGTCCATCATTTTCCA 58.267 50.000 0.00 0.00 0.00 3.53
300 2470 1.086696 CTGCGTCCGTCCATCATTTT 58.913 50.000 0.00 0.00 0.00 1.82
312 2482 4.200283 CGCTCTCCTCCTGCGTCC 62.200 72.222 0.00 0.00 44.00 4.79
316 2486 4.154347 CCACCGCTCTCCTCCTGC 62.154 72.222 0.00 0.00 0.00 4.85
317 2487 3.465403 CCCACCGCTCTCCTCCTG 61.465 72.222 0.00 0.00 0.00 3.86
318 2488 3.547787 AACCCACCGCTCTCCTCCT 62.548 63.158 0.00 0.00 0.00 3.69
326 2496 3.494254 TCCACCAAACCCACCGCT 61.494 61.111 0.00 0.00 0.00 5.52
334 2504 2.215942 AATGGCCTAGTCCACCAAAC 57.784 50.000 3.32 0.00 39.25 2.93
351 2521 6.268414 ACCCTACCCCAAATTACATCAAAAT 58.732 36.000 0.00 0.00 0.00 1.82
356 2526 3.203487 TGGACCCTACCCCAAATTACATC 59.797 47.826 0.00 0.00 0.00 3.06
360 2530 1.924552 GGTGGACCCTACCCCAAATTA 59.075 52.381 0.00 0.00 33.69 1.40
374 2544 5.007528 GTCACGTCTAACTAGATAGGTGGAC 59.992 48.000 10.47 10.47 44.91 4.02
382 2552 4.260825 CGCATCTGTCACGTCTAACTAGAT 60.261 45.833 0.00 0.00 34.39 1.98
394 2564 1.709147 GGCATGGACGCATCTGTCAC 61.709 60.000 0.00 0.00 40.72 3.67
399 2569 1.153086 GGAAGGCATGGACGCATCT 60.153 57.895 0.00 0.00 0.00 2.90
402 2572 1.558167 TAAGGGAAGGCATGGACGCA 61.558 55.000 0.00 0.00 0.00 5.24
405 2575 1.543429 CGGATAAGGGAAGGCATGGAC 60.543 57.143 0.00 0.00 0.00 4.02
406 2576 0.764890 CGGATAAGGGAAGGCATGGA 59.235 55.000 0.00 0.00 0.00 3.41
408 2578 1.597742 CACGGATAAGGGAAGGCATG 58.402 55.000 0.00 0.00 0.00 4.06
409 2579 0.179018 GCACGGATAAGGGAAGGCAT 60.179 55.000 0.00 0.00 0.00 4.40
410 2580 1.223487 GCACGGATAAGGGAAGGCA 59.777 57.895 0.00 0.00 0.00 4.75
415 2585 3.278574 CAAAATCTGCACGGATAAGGGA 58.721 45.455 0.00 0.00 0.00 4.20
421 2591 1.549203 AAGCCAAAATCTGCACGGAT 58.451 45.000 0.00 0.00 0.00 4.18
427 2597 1.816224 TCGGGTAAAGCCAAAATCTGC 59.184 47.619 0.00 0.00 39.65 4.26
435 2605 1.223487 GCATCCTCGGGTAAAGCCA 59.777 57.895 0.00 0.00 39.65 4.75
437 2607 0.815615 CAGGCATCCTCGGGTAAAGC 60.816 60.000 0.00 0.00 0.00 3.51
440 2610 1.760613 CTTACAGGCATCCTCGGGTAA 59.239 52.381 0.00 0.00 0.00 2.85
441 2611 1.410004 CTTACAGGCATCCTCGGGTA 58.590 55.000 0.00 0.00 0.00 3.69
443 2613 1.227674 GCTTACAGGCATCCTCGGG 60.228 63.158 0.00 0.00 0.00 5.14
444 2614 1.227674 GGCTTACAGGCATCCTCGG 60.228 63.158 0.00 0.00 40.97 4.63
445 2615 1.227674 GGGCTTACAGGCATCCTCG 60.228 63.158 0.00 0.00 43.44 4.63
452 2622 3.319122 CCTAAATGATTGGGCTTACAGGC 59.681 47.826 0.00 0.00 40.51 4.85
453 2623 3.891366 CCCTAAATGATTGGGCTTACAGG 59.109 47.826 0.00 0.00 35.92 4.00
465 2635 1.416243 TCGTACCGGCCCTAAATGAT 58.584 50.000 0.00 0.00 0.00 2.45
468 2638 1.411612 CTCTTCGTACCGGCCCTAAAT 59.588 52.381 0.00 0.00 0.00 1.40
471 2641 2.123428 GCTCTTCGTACCGGCCCTA 61.123 63.158 0.00 0.00 0.00 3.53
473 2643 3.090219 ATGCTCTTCGTACCGGCCC 62.090 63.158 0.00 0.00 0.00 5.80
485 2655 1.078848 GGCGACCAAGACATGCTCT 60.079 57.895 0.00 0.00 0.00 4.09
488 2658 0.598065 AAAAGGCGACCAAGACATGC 59.402 50.000 0.00 0.00 0.00 4.06
511 2681 0.609131 AGGAACCAAACAGGCCGATG 60.609 55.000 0.00 0.00 43.14 3.84
515 2685 0.609406 GGAGAGGAACCAAACAGGCC 60.609 60.000 0.00 0.00 43.14 5.19
517 2687 0.955919 GCGGAGAGGAACCAAACAGG 60.956 60.000 0.00 0.00 45.67 4.00
519 2689 0.034896 GAGCGGAGAGGAACCAAACA 59.965 55.000 0.00 0.00 0.00 2.83
522 2692 1.229209 AGGAGCGGAGAGGAACCAA 60.229 57.895 0.00 0.00 0.00 3.67
523 2693 1.682684 GAGGAGCGGAGAGGAACCA 60.683 63.158 0.00 0.00 0.00 3.67
524 2694 1.380650 AGAGGAGCGGAGAGGAACC 60.381 63.158 0.00 0.00 0.00 3.62
525 2695 0.681564 TCAGAGGAGCGGAGAGGAAC 60.682 60.000 0.00 0.00 0.00 3.62
526 2696 0.681564 GTCAGAGGAGCGGAGAGGAA 60.682 60.000 0.00 0.00 0.00 3.36
527 2697 1.077357 GTCAGAGGAGCGGAGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
528 2698 0.682855 AAGTCAGAGGAGCGGAGAGG 60.683 60.000 0.00 0.00 0.00 3.69
530 2700 1.027255 CGAAGTCAGAGGAGCGGAGA 61.027 60.000 0.00 0.00 0.00 3.71
531 2701 1.431440 CGAAGTCAGAGGAGCGGAG 59.569 63.158 0.00 0.00 0.00 4.63
537 2707 2.046864 CGGGAGCGAAGTCAGAGGA 61.047 63.158 0.00 0.00 0.00 3.71
539 2709 1.999071 CTCCGGGAGCGAAGTCAGAG 61.999 65.000 11.83 0.00 0.00 3.35
540 2710 2.035155 TCCGGGAGCGAAGTCAGA 59.965 61.111 0.00 0.00 0.00 3.27
541 2711 2.492090 CTCCGGGAGCGAAGTCAG 59.508 66.667 11.83 0.00 0.00 3.51
542 2712 3.760035 GCTCCGGGAGCGAAGTCA 61.760 66.667 31.44 0.00 45.85 3.41
554 2724 4.208686 GTAGGCTGGTCCGCTCCG 62.209 72.222 0.00 0.00 40.77 4.63
555 2725 3.075005 TGTAGGCTGGTCCGCTCC 61.075 66.667 0.00 0.00 40.77 4.70
556 2726 2.496817 CTGTAGGCTGGTCCGCTC 59.503 66.667 0.00 0.00 40.77 5.03
557 2727 3.775654 GCTGTAGGCTGGTCCGCT 61.776 66.667 0.00 0.00 40.77 5.52
566 2736 3.267483 TCCGTCAAAATAAGCTGTAGGC 58.733 45.455 0.00 0.00 42.19 3.93
567 2737 3.309954 GCTCCGTCAAAATAAGCTGTAGG 59.690 47.826 0.00 0.00 0.00 3.18
568 2738 3.932710 TGCTCCGTCAAAATAAGCTGTAG 59.067 43.478 0.00 0.00 34.11 2.74
569 2739 3.932710 CTGCTCCGTCAAAATAAGCTGTA 59.067 43.478 0.00 0.00 34.11 2.74
570 2740 2.744202 CTGCTCCGTCAAAATAAGCTGT 59.256 45.455 0.00 0.00 34.11 4.40
571 2741 2.476854 GCTGCTCCGTCAAAATAAGCTG 60.477 50.000 0.00 0.00 35.69 4.24
572 2742 1.740025 GCTGCTCCGTCAAAATAAGCT 59.260 47.619 0.00 0.00 34.11 3.74
573 2743 1.529826 CGCTGCTCCGTCAAAATAAGC 60.530 52.381 0.00 0.00 0.00 3.09
574 2744 1.999735 TCGCTGCTCCGTCAAAATAAG 59.000 47.619 0.00 0.00 0.00 1.73
575 2745 2.087501 TCGCTGCTCCGTCAAAATAA 57.912 45.000 0.00 0.00 0.00 1.40
576 2746 2.087501 TTCGCTGCTCCGTCAAAATA 57.912 45.000 0.00 0.00 0.00 1.40
577 2747 1.234821 TTTCGCTGCTCCGTCAAAAT 58.765 45.000 0.00 0.00 0.00 1.82
578 2748 1.018148 TTTTCGCTGCTCCGTCAAAA 58.982 45.000 0.00 0.00 0.00 2.44
579 2749 0.306533 GTTTTCGCTGCTCCGTCAAA 59.693 50.000 0.00 0.00 0.00 2.69
580 2750 1.503818 GGTTTTCGCTGCTCCGTCAA 61.504 55.000 0.00 0.00 0.00 3.18
581 2751 1.959226 GGTTTTCGCTGCTCCGTCA 60.959 57.895 0.00 0.00 0.00 4.35
582 2752 2.677979 GGGTTTTCGCTGCTCCGTC 61.678 63.158 0.00 0.00 0.00 4.79
583 2753 2.668550 GGGTTTTCGCTGCTCCGT 60.669 61.111 0.00 0.00 0.00 4.69
584 2754 2.668212 TGGGTTTTCGCTGCTCCG 60.668 61.111 0.00 0.00 0.00 4.63
585 2755 3.267974 CTGGGTTTTCGCTGCTCC 58.732 61.111 0.00 0.00 0.00 4.70
589 2759 2.335712 GGGAGCTGGGTTTTCGCTG 61.336 63.158 0.00 0.00 33.47 5.18
590 2760 2.034221 GGGAGCTGGGTTTTCGCT 59.966 61.111 0.00 0.00 36.57 4.93
591 2761 3.062466 GGGGAGCTGGGTTTTCGC 61.062 66.667 0.00 0.00 0.00 4.70
592 2762 1.675641 CTGGGGAGCTGGGTTTTCG 60.676 63.158 0.00 0.00 0.00 3.46
593 2763 1.979155 GCTGGGGAGCTGGGTTTTC 60.979 63.158 0.00 0.00 0.00 2.29
594 2764 2.118294 GCTGGGGAGCTGGGTTTT 59.882 61.111 0.00 0.00 0.00 2.43
595 2765 2.860971 AGCTGGGGAGCTGGGTTT 60.861 61.111 0.00 0.00 44.44 3.27
596 2766 3.334054 GAGCTGGGGAGCTGGGTT 61.334 66.667 0.24 0.00 46.36 4.11
599 2769 3.095163 ATGGAGCTGGGGAGCTGG 61.095 66.667 0.24 0.00 46.36 4.85
600 2770 2.192443 CATGGAGCTGGGGAGCTG 59.808 66.667 0.24 0.00 46.36 4.24
602 2772 3.092511 TCCATGGAGCTGGGGAGC 61.093 66.667 11.44 0.00 36.89 4.70
603 2773 3.238438 CTCCATGGAGCTGGGGAG 58.762 66.667 28.45 3.76 39.32 4.30
612 2782 1.621992 GTATCTCTCCGCTCCATGGA 58.378 55.000 15.27 15.27 0.00 3.41
613 2783 0.605589 GGTATCTCTCCGCTCCATGG 59.394 60.000 4.97 4.97 0.00 3.66
614 2784 1.332195 TGGTATCTCTCCGCTCCATG 58.668 55.000 0.00 0.00 0.00 3.66
615 2785 2.088104 TTGGTATCTCTCCGCTCCAT 57.912 50.000 0.00 0.00 0.00 3.41
616 2786 1.480954 GTTTGGTATCTCTCCGCTCCA 59.519 52.381 0.00 0.00 0.00 3.86
617 2787 1.480954 TGTTTGGTATCTCTCCGCTCC 59.519 52.381 0.00 0.00 0.00 4.70
618 2788 2.482142 CCTGTTTGGTATCTCTCCGCTC 60.482 54.545 0.00 0.00 0.00 5.03
619 2789 1.482593 CCTGTTTGGTATCTCTCCGCT 59.517 52.381 0.00 0.00 0.00 5.52
620 2790 1.473434 CCCTGTTTGGTATCTCTCCGC 60.473 57.143 0.00 0.00 0.00 5.54
621 2791 1.473434 GCCCTGTTTGGTATCTCTCCG 60.473 57.143 0.00 0.00 0.00 4.63
622 2792 1.134068 GGCCCTGTTTGGTATCTCTCC 60.134 57.143 0.00 0.00 0.00 3.71
623 2793 1.840635 AGGCCCTGTTTGGTATCTCTC 59.159 52.381 0.00 0.00 0.00 3.20
624 2794 1.972588 AGGCCCTGTTTGGTATCTCT 58.027 50.000 0.00 0.00 0.00 3.10
625 2795 3.926058 TTAGGCCCTGTTTGGTATCTC 57.074 47.619 0.00 0.00 0.00 2.75
626 2796 4.536765 CATTTAGGCCCTGTTTGGTATCT 58.463 43.478 0.00 0.00 0.00 1.98
627 2797 3.636764 CCATTTAGGCCCTGTTTGGTATC 59.363 47.826 0.00 0.00 0.00 2.24
628 2798 3.642141 CCATTTAGGCCCTGTTTGGTAT 58.358 45.455 0.00 0.00 0.00 2.73
629 2799 3.094484 CCATTTAGGCCCTGTTTGGTA 57.906 47.619 0.00 0.00 0.00 3.25
630 2800 1.937191 CCATTTAGGCCCTGTTTGGT 58.063 50.000 0.00 0.00 0.00 3.67
641 2811 0.753111 GGACAGCCCAGCCATTTAGG 60.753 60.000 0.00 0.00 36.02 2.69
642 2812 0.034186 TGGACAGCCCAGCCATTTAG 60.034 55.000 0.00 0.00 40.82 1.85
643 2813 2.082834 TGGACAGCCCAGCCATTTA 58.917 52.632 0.00 0.00 40.82 1.40
644 2814 2.853316 TGGACAGCCCAGCCATTT 59.147 55.556 0.00 0.00 40.82 2.32
668 2838 0.319040 CATCTACAGCCATCCGTCCG 60.319 60.000 0.00 0.00 0.00 4.79
671 2841 0.390860 GAGCATCTACAGCCATCCGT 59.609 55.000 0.00 0.00 0.00 4.69
705 2877 1.499056 CATGACGCCAGTGCTTGTC 59.501 57.895 0.00 1.88 34.43 3.18
732 2912 0.442699 GTGGACGGACGATGCTTTTC 59.557 55.000 0.00 0.00 0.00 2.29
735 2915 1.215647 GAGTGGACGGACGATGCTT 59.784 57.895 0.00 0.00 0.00 3.91
791 2971 7.201830 GCTAGAGTTTTCCTTCAAAAGAACCTT 60.202 37.037 0.00 0.00 34.49 3.50
814 2994 0.179037 GCTGGATGATGTGGCAGCTA 60.179 55.000 0.00 0.00 33.39 3.32
901 3085 1.740296 CCACCGAACGCCTAGTTGG 60.740 63.158 0.00 0.00 44.35 3.77
909 3094 2.860293 CATGTGTCCACCGAACGC 59.140 61.111 0.00 0.00 0.00 4.84
930 3115 1.460273 TAGCGGCACTGTCACTGTCA 61.460 55.000 1.45 0.00 0.00 3.58
946 3131 3.058016 TGTGCATCTTTCTTGCTTGTAGC 60.058 43.478 0.00 0.00 42.82 3.58
949 3134 3.570975 TCATGTGCATCTTTCTTGCTTGT 59.429 39.130 0.00 0.00 40.77 3.16
979 3164 3.735720 ATATAGTACGTCCTCCCTCCC 57.264 52.381 0.00 0.00 0.00 4.30
1009 3198 1.077716 GTATGTGTGCTGGGGGTCC 60.078 63.158 0.00 0.00 0.00 4.46
1015 3204 1.227342 TGCGTGTGTATGTGTGCTGG 61.227 55.000 0.00 0.00 0.00 4.85
1027 3216 1.228124 TTCTTCCCCCTTGCGTGTG 60.228 57.895 0.00 0.00 0.00 3.82
1037 3253 2.299297 TCGACTTCAGTTCTTCTTCCCC 59.701 50.000 0.00 0.00 0.00 4.81
1038 3254 3.662247 TCGACTTCAGTTCTTCTTCCC 57.338 47.619 0.00 0.00 0.00 3.97
1118 3339 1.760613 TGGACCTTGTCAGAGAACGTT 59.239 47.619 0.00 0.00 33.68 3.99
1119 3340 1.410004 TGGACCTTGTCAGAGAACGT 58.590 50.000 0.00 0.00 33.68 3.99
1168 3389 0.454600 TCCGTCAGCTCCGTCATTAC 59.545 55.000 2.02 0.00 0.00 1.89
1185 3406 1.539157 CCAGCCAGGTTTTCTCTTCC 58.461 55.000 0.00 0.00 0.00 3.46
1186 3407 0.884514 GCCAGCCAGGTTTTCTCTTC 59.115 55.000 0.00 0.00 40.61 2.87
1188 3409 1.075659 GGCCAGCCAGGTTTTCTCT 59.924 57.895 3.12 0.00 40.61 3.10
1195 3416 4.335647 CTTGTCGGCCAGCCAGGT 62.336 66.667 9.78 0.00 40.61 4.00
1222 3443 2.554142 GAAGATGTCATCACCGATGCA 58.446 47.619 15.20 0.00 39.63 3.96
1235 3456 1.743958 CGTCAGGTACTCCGAAGATGT 59.256 52.381 0.00 0.00 34.60 3.06
1240 3461 2.693762 CGCCGTCAGGTACTCCGAA 61.694 63.158 0.00 0.00 34.60 4.30
1555 3779 2.357517 CTGAAGGCGCTCCACGTT 60.358 61.111 7.64 0.00 46.11 3.99
1558 3782 2.125350 CTCCTGAAGGCGCTCCAC 60.125 66.667 7.64 0.00 34.44 4.02
1559 3783 4.087892 GCTCCTGAAGGCGCTCCA 62.088 66.667 7.64 1.77 42.37 3.86
1684 3911 1.672854 CTCGTCGCCCATGGGAGTAA 61.673 60.000 36.00 18.61 37.50 2.24
1719 3952 2.918802 TACAAGGACGGCGGTGGT 60.919 61.111 13.24 1.22 0.00 4.16
1795 4028 1.207488 AGGAACACCCATAGCTGCCA 61.207 55.000 0.00 0.00 37.41 4.92
1801 4034 0.469917 ATGGCGAGGAACACCCATAG 59.530 55.000 0.00 0.00 36.36 2.23
1881 4114 2.146342 ACGCTCATGTCAGTTCCAAAG 58.854 47.619 0.00 0.00 0.00 2.77
1885 4118 0.166814 GCAACGCTCATGTCAGTTCC 59.833 55.000 0.00 0.00 0.00 3.62
1892 4125 3.581024 ATGAAAATGCAACGCTCATGT 57.419 38.095 0.00 0.00 0.00 3.21
1895 4128 6.392353 CATTTAATGAAAATGCAACGCTCA 57.608 33.333 0.00 0.00 45.87 4.26
1945 4178 7.936847 ACATGCTAATATGTATCCCTCGAAAAA 59.063 33.333 0.00 0.00 39.40 1.94
1946 4179 7.450074 ACATGCTAATATGTATCCCTCGAAAA 58.550 34.615 0.00 0.00 39.40 2.29
1947 4180 7.004555 ACATGCTAATATGTATCCCTCGAAA 57.995 36.000 0.00 0.00 39.40 3.46
1948 4181 6.605471 ACATGCTAATATGTATCCCTCGAA 57.395 37.500 0.00 0.00 39.40 3.71
1949 4182 6.605471 AACATGCTAATATGTATCCCTCGA 57.395 37.500 0.00 0.00 40.24 4.04
1950 4183 8.771920 TTAAACATGCTAATATGTATCCCTCG 57.228 34.615 0.00 0.00 40.24 4.63
1958 4191 9.899661 TGTACCTCTTTAAACATGCTAATATGT 57.100 29.630 0.00 0.00 42.82 2.29
1962 4195 9.338622 GGTATGTACCTCTTTAAACATGCTAAT 57.661 33.333 1.92 0.00 43.10 1.73
1963 4196 7.493320 CGGTATGTACCTCTTTAAACATGCTAA 59.507 37.037 7.56 0.00 44.25 3.09
1964 4197 6.982141 CGGTATGTACCTCTTTAAACATGCTA 59.018 38.462 7.56 0.00 44.25 3.49
1965 4198 5.815740 CGGTATGTACCTCTTTAAACATGCT 59.184 40.000 7.56 0.00 44.25 3.79
1966 4199 5.007332 CCGGTATGTACCTCTTTAAACATGC 59.993 44.000 7.56 0.00 44.25 4.06
1967 4200 6.342906 TCCGGTATGTACCTCTTTAAACATG 58.657 40.000 0.00 0.00 44.25 3.21
1968 4201 6.549433 TCCGGTATGTACCTCTTTAAACAT 57.451 37.500 0.00 0.00 44.25 2.71
1969 4202 5.999205 TCCGGTATGTACCTCTTTAAACA 57.001 39.130 0.00 0.00 44.25 2.83
1970 4203 7.361201 GGTTTTCCGGTATGTACCTCTTTAAAC 60.361 40.741 0.00 9.37 44.25 2.01
1971 4204 6.654582 GGTTTTCCGGTATGTACCTCTTTAAA 59.345 38.462 0.00 0.00 44.25 1.52
1972 4205 6.172630 GGTTTTCCGGTATGTACCTCTTTAA 58.827 40.000 0.00 0.00 44.25 1.52
1978 4211 1.561076 GGGGTTTTCCGGTATGTACCT 59.439 52.381 0.00 0.00 44.25 3.08
1986 4219 2.089600 TTTCATTGGGGTTTTCCGGT 57.910 45.000 0.00 0.00 41.82 5.28
2007 4240 7.148407 ACAGAGAGCTATTCAAAACGGTAATTG 60.148 37.037 0.00 1.35 0.00 2.32
2011 4244 5.401531 ACAGAGAGCTATTCAAAACGGTA 57.598 39.130 0.00 0.00 0.00 4.02
2012 4245 4.246458 GACAGAGAGCTATTCAAAACGGT 58.754 43.478 0.00 0.00 0.00 4.83
2052 4299 1.811266 GCTTCGAGGAGATTGCGCA 60.811 57.895 5.66 5.66 0.00 6.09
2079 4326 0.107410 TTGACTTGCGTTGAGGTGGT 60.107 50.000 0.00 0.00 0.00 4.16
2119 4369 4.307032 TGCCTGAAAAGAAGAAGCCTAT 57.693 40.909 0.00 0.00 0.00 2.57
2121 4371 2.664402 TGCCTGAAAAGAAGAAGCCT 57.336 45.000 0.00 0.00 0.00 4.58
2124 4374 5.835257 TGTGAAATGCCTGAAAAGAAGAAG 58.165 37.500 0.00 0.00 0.00 2.85
2130 4380 5.716094 TCATCATGTGAAATGCCTGAAAAG 58.284 37.500 0.00 0.00 32.78 2.27
2131 4381 5.725325 TCATCATGTGAAATGCCTGAAAA 57.275 34.783 0.00 0.00 32.78 2.29
2153 4405 1.901085 GGAGCGGTGTCCTCATCTT 59.099 57.895 0.00 0.00 33.30 2.40
2223 4475 3.941704 ATTCCCCTCAATTGACTCCTC 57.058 47.619 3.38 0.00 0.00 3.71
2260 4512 1.922369 ATGGTCTGGTGCTCAGCCT 60.922 57.895 0.00 5.68 43.06 4.58
2264 4516 0.320683 CGTTCATGGTCTGGTGCTCA 60.321 55.000 0.00 0.00 0.00 4.26
2269 4521 0.179004 TTTGCCGTTCATGGTCTGGT 60.179 50.000 0.00 0.00 0.00 4.00
2270 4522 0.958091 TTTTGCCGTTCATGGTCTGG 59.042 50.000 0.00 0.00 0.00 3.86
2271 4523 3.302365 AATTTTGCCGTTCATGGTCTG 57.698 42.857 0.00 0.00 0.00 3.51
2272 4524 3.611530 CGAAATTTTGCCGTTCATGGTCT 60.612 43.478 0.00 0.00 0.00 3.85
2273 4525 2.661195 CGAAATTTTGCCGTTCATGGTC 59.339 45.455 0.00 0.00 0.00 4.02
2274 4526 2.035321 ACGAAATTTTGCCGTTCATGGT 59.965 40.909 5.27 0.00 32.03 3.55
2275 4527 2.408032 CACGAAATTTTGCCGTTCATGG 59.592 45.455 5.27 0.00 33.96 3.66
2276 4528 3.049206 ACACGAAATTTTGCCGTTCATG 58.951 40.909 5.27 0.00 33.96 3.07
2277 4529 3.363341 ACACGAAATTTTGCCGTTCAT 57.637 38.095 5.27 0.00 33.96 2.57
2278 4530 2.853731 ACACGAAATTTTGCCGTTCA 57.146 40.000 5.27 0.00 33.96 3.18
2279 4531 4.031878 TCAAAACACGAAATTTTGCCGTTC 59.968 37.500 12.07 0.00 43.62 3.95
2280 4532 3.927142 TCAAAACACGAAATTTTGCCGTT 59.073 34.783 5.27 6.66 43.62 4.44
2281 4533 3.304826 GTCAAAACACGAAATTTTGCCGT 59.695 39.130 5.27 1.48 43.62 5.68
2282 4534 3.302156 GGTCAAAACACGAAATTTTGCCG 60.302 43.478 5.27 0.83 43.62 5.69
2283 4535 3.001838 GGGTCAAAACACGAAATTTTGCC 59.998 43.478 5.27 16.17 43.62 4.52
2284 4536 3.868661 AGGGTCAAAACACGAAATTTTGC 59.131 39.130 5.27 11.02 43.62 3.68
2285 4537 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
2286 4538 6.651225 TGAAAAGGGTCAAAACACGAAATTTT 59.349 30.769 0.00 0.00 32.44 1.82
2287 4539 6.091577 GTGAAAAGGGTCAAAACACGAAATTT 59.908 34.615 0.00 0.00 32.44 1.82
2288 4540 5.579119 GTGAAAAGGGTCAAAACACGAAATT 59.421 36.000 0.00 0.00 32.44 1.82
2289 4541 5.106442 GTGAAAAGGGTCAAAACACGAAAT 58.894 37.500 0.00 0.00 32.44 2.17
2290 4542 4.487019 GTGAAAAGGGTCAAAACACGAAA 58.513 39.130 0.00 0.00 32.44 3.46
2291 4543 4.099380 GTGAAAAGGGTCAAAACACGAA 57.901 40.909 0.00 0.00 32.44 3.85
2292 4544 3.768468 GTGAAAAGGGTCAAAACACGA 57.232 42.857 0.00 0.00 32.44 4.35
2293 4545 2.446282 CGTGAAAAGGGTCAAAACACG 58.554 47.619 0.00 0.00 42.04 4.49
2294 4546 3.497297 ACGTGAAAAGGGTCAAAACAC 57.503 42.857 0.00 0.00 0.00 3.32
2295 4547 6.939132 TTATACGTGAAAAGGGTCAAAACA 57.061 33.333 0.00 0.00 0.00 2.83
2296 4548 8.806177 ATTTTATACGTGAAAAGGGTCAAAAC 57.194 30.769 13.47 0.00 0.00 2.43
2297 4549 7.804129 CGATTTTATACGTGAAAAGGGTCAAAA 59.196 33.333 13.47 0.00 0.00 2.44
2298 4550 7.172875 TCGATTTTATACGTGAAAAGGGTCAAA 59.827 33.333 13.47 0.26 0.00 2.69
2299 4551 6.649973 TCGATTTTATACGTGAAAAGGGTCAA 59.350 34.615 13.47 0.00 0.00 3.18
2300 4552 6.164876 TCGATTTTATACGTGAAAAGGGTCA 58.835 36.000 13.47 0.00 0.00 4.02
2301 4553 6.312180 ACTCGATTTTATACGTGAAAAGGGTC 59.688 38.462 13.47 7.49 0.00 4.46
2302 4554 6.168389 ACTCGATTTTATACGTGAAAAGGGT 58.832 36.000 13.47 6.46 0.00 4.34
2303 4555 6.657836 ACTCGATTTTATACGTGAAAAGGG 57.342 37.500 13.47 9.03 0.00 3.95
2304 4556 7.960793 AGAACTCGATTTTATACGTGAAAAGG 58.039 34.615 13.47 9.28 0.00 3.11
2307 4559 9.630098 AGTTAGAACTCGATTTTATACGTGAAA 57.370 29.630 0.00 0.00 32.86 2.69
2308 4560 9.630098 AAGTTAGAACTCGATTTTATACGTGAA 57.370 29.630 0.00 0.00 38.57 3.18
2309 4561 9.282247 GAAGTTAGAACTCGATTTTATACGTGA 57.718 33.333 0.00 0.00 38.57 4.35
2310 4562 8.251114 CGAAGTTAGAACTCGATTTTATACGTG 58.749 37.037 0.00 0.00 38.57 4.49
2311 4563 7.965107 ACGAAGTTAGAACTCGATTTTATACGT 59.035 33.333 16.01 0.00 37.78 3.57
2312 4564 8.320451 ACGAAGTTAGAACTCGATTTTATACG 57.680 34.615 16.01 0.00 37.78 3.06
2332 4584 0.596577 TCAGGACTCCGTCAACGAAG 59.403 55.000 3.71 0.00 43.02 3.79
2333 4585 1.034356 TTCAGGACTCCGTCAACGAA 58.966 50.000 3.71 0.00 43.02 3.85
2334 4586 0.313043 GTTCAGGACTCCGTCAACGA 59.687 55.000 3.71 0.00 43.02 3.85
2351 4603 0.638292 TATCCGGACACCCCCTAGTT 59.362 55.000 6.12 0.00 0.00 2.24
2377 4629 3.901222 TGGAGTCCGGCTGATGATAATAA 59.099 43.478 4.30 0.00 0.00 1.40
2381 4633 1.688735 CTTGGAGTCCGGCTGATGATA 59.311 52.381 4.30 0.00 0.00 2.15
2446 4698 0.472471 TTCCACGCCAAGGAAAGTCT 59.528 50.000 0.00 0.00 41.94 3.24
2497 4749 3.707611 ACATAGCCGGTTACAATGGTAGA 59.292 43.478 1.90 0.00 0.00 2.59
2513 4765 2.037381 GAGGGCTAGGGTTACACATAGC 59.963 54.545 8.30 8.30 39.91 2.97
2516 4768 2.399580 GAGAGGGCTAGGGTTACACAT 58.600 52.381 0.00 0.00 0.00 3.21
2601 4853 4.172807 TCAAGGAGGCTAAACCCTAGAAA 58.827 43.478 0.00 0.00 40.58 2.52
2692 4944 2.066393 CGGGCCCTCTTGATGGAGA 61.066 63.158 22.43 0.00 35.52 3.71
2787 5039 1.385528 GGTATCAAAACCGGCGGATT 58.614 50.000 35.78 25.85 0.00 3.01
2803 5055 2.552599 TGAAAGCACCAATGTCGGTA 57.447 45.000 0.00 0.00 37.07 4.02
2830 5082 4.056125 TGCGACGGCACAGAGGAG 62.056 66.667 0.00 0.00 46.21 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.