Multiple sequence alignment - TraesCS5B01G054400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G054400 chr5B 100.000 2428 0 0 677 3104 59645578 59648005 0.000000e+00 4484.0
1 TraesCS5B01G054400 chr5B 100.000 286 0 0 1 286 59644902 59645187 2.120000e-146 529.0
2 TraesCS5B01G054400 chr5D 90.128 2036 78 44 677 2658 56798874 56800840 0.000000e+00 2532.0
3 TraesCS5B01G054400 chr5D 88.264 409 24 12 677 1080 56795896 56796285 4.690000e-128 468.0
4 TraesCS5B01G054400 chr5D 88.649 185 6 4 2927 3102 56801107 56801285 8.720000e-51 211.0
5 TraesCS5B01G054400 chr5D 94.595 111 3 3 2783 2891 56800995 56801104 5.320000e-38 169.0
6 TraesCS5B01G054400 chr5D 97.059 34 1 0 253 286 56798843 56798876 1.200000e-04 58.4
7 TraesCS5B01G054400 chr5A 86.361 1987 128 72 711 2658 45244520 45246402 0.000000e+00 2036.0
8 TraesCS5B01G054400 chr5A 86.014 143 9 5 2759 2891 45246482 45246623 3.230000e-30 143.0
9 TraesCS5B01G054400 chr5A 85.437 103 6 1 1543 1645 45241411 45241504 7.080000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G054400 chr5B 59644902 59648005 3103 False 2506.500000 4484 100.000000 1 3104 2 chr5B.!!$F1 3103
1 TraesCS5B01G054400 chr5D 56795896 56801285 5389 False 687.680000 2532 91.739000 253 3102 5 chr5D.!!$F1 2849
2 TraesCS5B01G054400 chr5A 45241411 45246623 5212 False 759.333333 2036 85.937333 711 2891 3 chr5A.!!$F1 2180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.108992 GCGTATGAGGTCACCGTTGA 60.109 55.0 0.00 0.0 0.0 3.18 F
702 703 0.179004 TAGTGCACACCCAACCCAAG 60.179 55.0 21.04 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 6535 0.322906 CCACCTTCCCCTGCTTCTTC 60.323 60.0 0.00 0.00 0.0 2.87 R
2300 6817 0.038251 TACTTGTCCTCACGCAGCTG 60.038 55.0 10.11 10.11 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.125713 CCATGTCAGCCACGCGTA 60.126 61.111 13.44 0.00 0.00 4.42
43 44 1.521457 CCATGTCAGCCACGCGTAT 60.521 57.895 13.44 0.00 0.00 3.06
44 45 1.637934 CATGTCAGCCACGCGTATG 59.362 57.895 13.44 11.87 0.00 2.39
45 46 0.805711 CATGTCAGCCACGCGTATGA 60.806 55.000 13.44 14.25 0.00 2.15
46 47 0.528466 ATGTCAGCCACGCGTATGAG 60.528 55.000 13.44 2.60 0.00 2.90
47 48 1.878522 GTCAGCCACGCGTATGAGG 60.879 63.158 13.44 10.72 0.00 3.86
48 49 2.184322 CAGCCACGCGTATGAGGT 59.816 61.111 13.44 3.78 0.00 3.85
49 50 1.878522 CAGCCACGCGTATGAGGTC 60.879 63.158 13.44 5.57 0.00 3.85
50 51 2.183300 GCCACGCGTATGAGGTCA 59.817 61.111 13.44 0.00 0.00 4.02
51 52 2.165301 GCCACGCGTATGAGGTCAC 61.165 63.158 13.44 0.00 0.00 3.67
52 53 1.518572 CCACGCGTATGAGGTCACC 60.519 63.158 13.44 0.00 0.00 4.02
53 54 1.872234 CACGCGTATGAGGTCACCG 60.872 63.158 13.44 0.00 0.00 4.94
54 55 2.338015 ACGCGTATGAGGTCACCGT 61.338 57.895 11.67 0.00 0.00 4.83
55 56 1.153901 CGCGTATGAGGTCACCGTT 60.154 57.895 0.00 0.00 0.00 4.44
56 57 1.410737 CGCGTATGAGGTCACCGTTG 61.411 60.000 0.00 0.00 0.00 4.10
57 58 0.108992 GCGTATGAGGTCACCGTTGA 60.109 55.000 0.00 0.00 0.00 3.18
65 66 3.731136 TCACCGTTGACTGCAAGC 58.269 55.556 0.00 0.00 37.60 4.01
66 67 1.146041 TCACCGTTGACTGCAAGCT 59.854 52.632 0.00 0.00 37.60 3.74
67 68 0.391228 TCACCGTTGACTGCAAGCTA 59.609 50.000 0.00 0.00 37.60 3.32
68 69 0.792640 CACCGTTGACTGCAAGCTAG 59.207 55.000 0.00 0.00 37.60 3.42
69 70 0.393077 ACCGTTGACTGCAAGCTAGT 59.607 50.000 0.00 0.00 37.60 2.57
70 71 1.202651 ACCGTTGACTGCAAGCTAGTT 60.203 47.619 0.00 0.00 37.60 2.24
71 72 1.873591 CCGTTGACTGCAAGCTAGTTT 59.126 47.619 0.00 0.00 37.60 2.66
72 73 3.064207 CCGTTGACTGCAAGCTAGTTTA 58.936 45.455 0.00 0.00 37.60 2.01
73 74 3.123621 CCGTTGACTGCAAGCTAGTTTAG 59.876 47.826 0.00 0.00 37.60 1.85
74 75 3.123621 CGTTGACTGCAAGCTAGTTTAGG 59.876 47.826 0.00 0.00 37.60 2.69
75 76 4.065789 GTTGACTGCAAGCTAGTTTAGGT 58.934 43.478 0.00 0.00 37.60 3.08
76 77 4.351874 TGACTGCAAGCTAGTTTAGGTT 57.648 40.909 0.00 0.00 46.49 3.50
77 78 4.714632 TGACTGCAAGCTAGTTTAGGTTT 58.285 39.130 0.00 0.00 43.37 3.27
78 79 5.130350 TGACTGCAAGCTAGTTTAGGTTTT 58.870 37.500 0.00 0.00 43.37 2.43
79 80 5.592688 TGACTGCAAGCTAGTTTAGGTTTTT 59.407 36.000 0.00 0.00 43.37 1.94
80 81 6.073327 ACTGCAAGCTAGTTTAGGTTTTTC 57.927 37.500 0.00 0.00 43.37 2.29
81 82 5.828328 ACTGCAAGCTAGTTTAGGTTTTTCT 59.172 36.000 0.00 0.00 43.37 2.52
82 83 6.321435 ACTGCAAGCTAGTTTAGGTTTTTCTT 59.679 34.615 0.00 0.00 43.37 2.52
83 84 7.107639 TGCAAGCTAGTTTAGGTTTTTCTTT 57.892 32.000 0.00 0.00 43.37 2.52
84 85 7.552459 TGCAAGCTAGTTTAGGTTTTTCTTTT 58.448 30.769 0.00 0.00 43.37 2.27
85 86 8.038351 TGCAAGCTAGTTTAGGTTTTTCTTTTT 58.962 29.630 0.00 0.00 43.37 1.94
86 87 9.524106 GCAAGCTAGTTTAGGTTTTTCTTTTTA 57.476 29.630 0.00 0.00 43.37 1.52
155 156 5.763444 ATGTCTGAACGTAAATGAGTTCG 57.237 39.130 0.00 0.00 46.94 3.95
157 158 3.369835 CTGAACGTAAATGAGTTCGGC 57.630 47.619 4.52 0.00 46.94 5.54
158 159 2.070783 TGAACGTAAATGAGTTCGGCC 58.929 47.619 0.00 0.00 46.94 6.13
159 160 1.395954 GAACGTAAATGAGTTCGGCCC 59.604 52.381 0.00 0.00 37.58 5.80
160 161 0.611714 ACGTAAATGAGTTCGGCCCT 59.388 50.000 0.00 0.00 0.00 5.19
161 162 1.287425 CGTAAATGAGTTCGGCCCTC 58.713 55.000 0.00 0.00 0.00 4.30
162 163 1.134788 CGTAAATGAGTTCGGCCCTCT 60.135 52.381 8.70 0.00 0.00 3.69
163 164 2.677037 CGTAAATGAGTTCGGCCCTCTT 60.677 50.000 8.70 0.39 0.00 2.85
164 165 2.586648 AAATGAGTTCGGCCCTCTTT 57.413 45.000 8.70 6.06 0.00 2.52
165 166 1.826385 AATGAGTTCGGCCCTCTTTG 58.174 50.000 8.70 0.00 0.00 2.77
166 167 0.678048 ATGAGTTCGGCCCTCTTTGC 60.678 55.000 8.70 0.00 0.00 3.68
167 168 1.302511 GAGTTCGGCCCTCTTTGCA 60.303 57.895 0.00 0.00 0.00 4.08
168 169 0.678048 GAGTTCGGCCCTCTTTGCAT 60.678 55.000 0.00 0.00 0.00 3.96
169 170 0.962356 AGTTCGGCCCTCTTTGCATG 60.962 55.000 0.00 0.00 0.00 4.06
170 171 0.960364 GTTCGGCCCTCTTTGCATGA 60.960 55.000 0.00 0.00 0.00 3.07
171 172 0.251121 TTCGGCCCTCTTTGCATGAA 60.251 50.000 0.00 0.00 0.00 2.57
172 173 0.251121 TCGGCCCTCTTTGCATGAAA 60.251 50.000 0.00 0.00 0.00 2.69
173 174 0.819582 CGGCCCTCTTTGCATGAAAT 59.180 50.000 0.00 0.00 0.00 2.17
174 175 1.205417 CGGCCCTCTTTGCATGAAATT 59.795 47.619 0.00 0.00 0.00 1.82
175 176 2.736400 CGGCCCTCTTTGCATGAAATTC 60.736 50.000 0.00 0.00 0.00 2.17
176 177 2.533266 GCCCTCTTTGCATGAAATTCG 58.467 47.619 0.00 0.00 0.00 3.34
177 178 2.094545 GCCCTCTTTGCATGAAATTCGT 60.095 45.455 0.00 0.00 0.00 3.85
178 179 3.762779 CCCTCTTTGCATGAAATTCGTC 58.237 45.455 0.00 0.00 0.00 4.20
179 180 3.428045 CCCTCTTTGCATGAAATTCGTCC 60.428 47.826 0.00 0.00 0.00 4.79
180 181 3.191162 CCTCTTTGCATGAAATTCGTCCA 59.809 43.478 0.00 0.00 0.00 4.02
181 182 4.409570 CTCTTTGCATGAAATTCGTCCAG 58.590 43.478 0.00 0.00 0.00 3.86
182 183 3.820467 TCTTTGCATGAAATTCGTCCAGT 59.180 39.130 0.00 0.00 0.00 4.00
183 184 3.557577 TTGCATGAAATTCGTCCAGTG 57.442 42.857 0.00 0.00 0.00 3.66
184 185 1.199789 TGCATGAAATTCGTCCAGTGC 59.800 47.619 0.00 0.00 0.00 4.40
185 186 1.791555 GCATGAAATTCGTCCAGTGCG 60.792 52.381 0.00 0.00 0.00 5.34
186 187 1.464608 CATGAAATTCGTCCAGTGCGT 59.535 47.619 0.00 0.00 0.00 5.24
187 188 1.588674 TGAAATTCGTCCAGTGCGTT 58.411 45.000 0.00 0.00 0.00 4.84
188 189 1.529438 TGAAATTCGTCCAGTGCGTTC 59.471 47.619 0.00 0.00 0.00 3.95
189 190 0.511221 AAATTCGTCCAGTGCGTTCG 59.489 50.000 0.00 0.00 0.00 3.95
190 191 0.319211 AATTCGTCCAGTGCGTTCGA 60.319 50.000 0.00 0.00 0.00 3.71
191 192 0.319211 ATTCGTCCAGTGCGTTCGAA 60.319 50.000 0.00 0.00 42.87 3.71
192 193 0.319211 TTCGTCCAGTGCGTTCGAAT 60.319 50.000 0.00 0.00 36.00 3.34
193 194 0.731514 TCGTCCAGTGCGTTCGAATC 60.732 55.000 0.00 0.00 0.00 2.52
194 195 1.683790 CGTCCAGTGCGTTCGAATCC 61.684 60.000 0.00 0.00 0.00 3.01
195 196 1.079405 TCCAGTGCGTTCGAATCCC 60.079 57.895 0.00 0.00 0.00 3.85
196 197 1.375396 CCAGTGCGTTCGAATCCCA 60.375 57.895 0.00 0.00 0.00 4.37
197 198 0.744414 CCAGTGCGTTCGAATCCCAT 60.744 55.000 0.00 0.00 0.00 4.00
198 199 1.086696 CAGTGCGTTCGAATCCCATT 58.913 50.000 0.00 0.00 0.00 3.16
199 200 1.468520 CAGTGCGTTCGAATCCCATTT 59.531 47.619 0.00 0.00 0.00 2.32
200 201 2.675844 CAGTGCGTTCGAATCCCATTTA 59.324 45.455 0.00 0.00 0.00 1.40
201 202 3.126171 CAGTGCGTTCGAATCCCATTTAA 59.874 43.478 0.00 0.00 0.00 1.52
202 203 3.754323 AGTGCGTTCGAATCCCATTTAAA 59.246 39.130 0.00 0.00 0.00 1.52
203 204 4.216687 AGTGCGTTCGAATCCCATTTAAAA 59.783 37.500 0.00 0.00 0.00 1.52
204 205 5.099575 GTGCGTTCGAATCCCATTTAAAAT 58.900 37.500 0.00 0.00 0.00 1.82
205 206 6.094325 AGTGCGTTCGAATCCCATTTAAAATA 59.906 34.615 0.00 0.00 0.00 1.40
206 207 6.915843 GTGCGTTCGAATCCCATTTAAAATAT 59.084 34.615 0.00 0.00 0.00 1.28
207 208 8.071368 GTGCGTTCGAATCCCATTTAAAATATA 58.929 33.333 0.00 0.00 0.00 0.86
208 209 8.788806 TGCGTTCGAATCCCATTTAAAATATAT 58.211 29.630 0.00 0.00 0.00 0.86
209 210 9.061610 GCGTTCGAATCCCATTTAAAATATATG 57.938 33.333 0.00 0.00 0.00 1.78
210 211 9.061610 CGTTCGAATCCCATTTAAAATATATGC 57.938 33.333 0.00 0.00 0.00 3.14
211 212 9.061610 GTTCGAATCCCATTTAAAATATATGCG 57.938 33.333 0.00 0.00 0.00 4.73
212 213 7.757526 TCGAATCCCATTTAAAATATATGCGG 58.242 34.615 0.00 0.00 0.00 5.69
213 214 7.608376 TCGAATCCCATTTAAAATATATGCGGA 59.392 33.333 0.00 0.00 0.00 5.54
214 215 7.696453 CGAATCCCATTTAAAATATATGCGGAC 59.304 37.037 0.00 0.00 0.00 4.79
215 216 8.415950 AATCCCATTTAAAATATATGCGGACA 57.584 30.769 0.00 0.00 0.00 4.02
216 217 7.209471 TCCCATTTAAAATATATGCGGACAC 57.791 36.000 0.00 0.00 0.00 3.67
217 218 6.072948 TCCCATTTAAAATATATGCGGACACG 60.073 38.462 0.00 0.00 44.63 4.49
218 219 6.072948 CCCATTTAAAATATATGCGGACACGA 60.073 38.462 0.00 0.00 44.60 4.35
219 220 7.361713 CCCATTTAAAATATATGCGGACACGAT 60.362 37.037 0.00 0.00 44.60 3.73
220 221 8.020819 CCATTTAAAATATATGCGGACACGATT 58.979 33.333 0.00 0.00 44.60 3.34
223 224 9.478768 TTTAAAATATATGCGGACACGATTAGA 57.521 29.630 0.00 0.00 44.60 2.10
224 225 9.647797 TTAAAATATATGCGGACACGATTAGAT 57.352 29.630 0.00 0.00 44.60 1.98
225 226 7.525688 AAATATATGCGGACACGATTAGATG 57.474 36.000 0.00 0.00 44.60 2.90
226 227 2.154854 ATGCGGACACGATTAGATGG 57.845 50.000 0.00 0.00 44.60 3.51
227 228 1.107945 TGCGGACACGATTAGATGGA 58.892 50.000 0.00 0.00 44.60 3.41
228 229 1.478916 TGCGGACACGATTAGATGGAA 59.521 47.619 0.00 0.00 44.60 3.53
229 230 1.859080 GCGGACACGATTAGATGGAAC 59.141 52.381 0.00 0.00 44.60 3.62
230 231 2.481449 GCGGACACGATTAGATGGAACT 60.481 50.000 0.00 0.00 44.60 3.01
231 232 3.116300 CGGACACGATTAGATGGAACTG 58.884 50.000 0.00 0.00 44.60 3.16
232 233 3.428999 CGGACACGATTAGATGGAACTGT 60.429 47.826 0.00 0.00 44.60 3.55
233 234 4.113354 GGACACGATTAGATGGAACTGTC 58.887 47.826 0.00 0.00 0.00 3.51
234 235 4.113354 GACACGATTAGATGGAACTGTCC 58.887 47.826 0.00 0.00 45.21 4.02
250 251 8.831715 GGAACTGTCCAAATCACATTTAAAAT 57.168 30.769 0.00 0.00 44.26 1.82
251 252 8.711457 GGAACTGTCCAAATCACATTTAAAATG 58.289 33.333 0.00 0.00 44.26 2.32
252 253 9.260002 GAACTGTCCAAATCACATTTAAAATGT 57.740 29.630 0.00 0.00 0.00 2.71
256 257 9.149225 TGTCCAAATCACATTTAAAATGTATGC 57.851 29.630 0.00 0.00 0.00 3.14
257 258 8.320295 GTCCAAATCACATTTAAAATGTATGCG 58.680 33.333 0.00 0.00 0.00 4.73
258 259 8.246871 TCCAAATCACATTTAAAATGTATGCGA 58.753 29.630 0.00 0.00 0.00 5.10
259 260 8.320295 CCAAATCACATTTAAAATGTATGCGAC 58.680 33.333 0.00 0.00 0.00 5.19
260 261 9.075519 CAAATCACATTTAAAATGTATGCGACT 57.924 29.630 0.00 0.00 0.00 4.18
261 262 8.619146 AATCACATTTAAAATGTATGCGACTG 57.381 30.769 0.00 0.00 0.00 3.51
262 263 7.371126 TCACATTTAAAATGTATGCGACTGA 57.629 32.000 0.00 0.00 0.00 3.41
263 264 7.984391 TCACATTTAAAATGTATGCGACTGAT 58.016 30.769 0.00 0.00 0.00 2.90
264 265 8.458052 TCACATTTAAAATGTATGCGACTGATT 58.542 29.630 0.00 0.00 0.00 2.57
265 266 9.715123 CACATTTAAAATGTATGCGACTGATTA 57.285 29.630 0.00 0.00 0.00 1.75
270 271 9.549509 TTAAAATGTATGCGACTGATTAACAAC 57.450 29.630 0.00 0.00 0.00 3.32
271 272 6.735678 AATGTATGCGACTGATTAACAACA 57.264 33.333 0.00 0.00 0.00 3.33
272 273 6.735678 ATGTATGCGACTGATTAACAACAA 57.264 33.333 0.00 0.00 0.00 2.83
273 274 6.546972 TGTATGCGACTGATTAACAACAAA 57.453 33.333 0.00 0.00 0.00 2.83
274 275 6.367421 TGTATGCGACTGATTAACAACAAAC 58.633 36.000 0.00 0.00 0.00 2.93
275 276 4.884458 TGCGACTGATTAACAACAAACA 57.116 36.364 0.00 0.00 0.00 2.83
276 277 5.236655 TGCGACTGATTAACAACAAACAA 57.763 34.783 0.00 0.00 0.00 2.83
277 278 5.270083 TGCGACTGATTAACAACAAACAAG 58.730 37.500 0.00 0.00 0.00 3.16
278 279 5.163703 TGCGACTGATTAACAACAAACAAGT 60.164 36.000 0.00 0.00 0.00 3.16
279 280 5.395486 GCGACTGATTAACAACAAACAAGTC 59.605 40.000 0.00 0.00 0.00 3.01
280 281 5.907391 CGACTGATTAACAACAAACAAGTCC 59.093 40.000 0.00 0.00 0.00 3.85
281 282 6.457663 CGACTGATTAACAACAAACAAGTCCA 60.458 38.462 0.00 0.00 0.00 4.02
282 283 6.560711 ACTGATTAACAACAAACAAGTCCAC 58.439 36.000 0.00 0.00 0.00 4.02
283 284 6.151985 ACTGATTAACAACAAACAAGTCCACA 59.848 34.615 0.00 0.00 0.00 4.17
284 285 6.326375 TGATTAACAACAAACAAGTCCACAC 58.674 36.000 0.00 0.00 0.00 3.82
285 286 5.707242 TTAACAACAAACAAGTCCACACA 57.293 34.783 0.00 0.00 0.00 3.72
702 703 0.179004 TAGTGCACACCCAACCCAAG 60.179 55.000 21.04 0.00 0.00 3.61
710 711 4.382541 CCAACCCAAGGCCCCCTC 62.383 72.222 0.00 0.00 30.89 4.30
711 712 3.589542 CAACCCAAGGCCCCCTCA 61.590 66.667 0.00 0.00 30.89 3.86
714 715 3.589542 CCCAAGGCCCCCTCACAA 61.590 66.667 0.00 0.00 30.89 3.33
727 5186 2.279851 CACAAGTCCACCGCACGA 60.280 61.111 0.00 0.00 0.00 4.35
765 5224 2.690497 CTCTAATCAAGAGGGCGACTGA 59.310 50.000 0.00 0.00 46.98 3.41
870 5332 2.718563 TCTATTTTGTTCCCTTCCGCC 58.281 47.619 0.00 0.00 0.00 6.13
871 5333 2.040545 TCTATTTTGTTCCCTTCCGCCA 59.959 45.455 0.00 0.00 0.00 5.69
872 5334 1.710816 ATTTTGTTCCCTTCCGCCAA 58.289 45.000 0.00 0.00 0.00 4.52
921 5393 2.230266 AGAAGAGAAGACAACTCGCTCC 59.770 50.000 0.00 0.00 39.12 4.70
922 5394 0.892063 AGAGAAGACAACTCGCTCCC 59.108 55.000 0.00 0.00 39.12 4.30
1212 5701 2.821366 GCCGTCTCCACCATGCTG 60.821 66.667 0.00 0.00 0.00 4.41
1454 5949 3.151022 GAGGGACCTGCTCCGGAG 61.151 72.222 27.83 27.83 40.56 4.63
1599 6100 4.754667 GACCCCAACGAGCCCGAC 62.755 72.222 0.00 0.00 39.50 4.79
1601 6102 4.323477 CCCCAACGAGCCCGACAA 62.323 66.667 0.00 0.00 39.50 3.18
1602 6103 2.742372 CCCAACGAGCCCGACAAG 60.742 66.667 0.00 0.00 39.50 3.16
1603 6104 3.423154 CCAACGAGCCCGACAAGC 61.423 66.667 0.00 0.00 39.50 4.01
1604 6105 3.423154 CAACGAGCCCGACAAGCC 61.423 66.667 0.00 0.00 39.50 4.35
1605 6106 4.699522 AACGAGCCCGACAAGCCC 62.700 66.667 0.00 0.00 39.50 5.19
1752 6253 3.700350 CCCCCTCCTCCACCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
1998 6499 3.068691 CGGCTCTTCTCCCCGTCA 61.069 66.667 0.00 0.00 37.36 4.35
2055 6556 4.351054 AAGCAGGGGAAGGTGGCG 62.351 66.667 0.00 0.00 0.00 5.69
2067 6568 2.815647 GTGGCGAAGAAGGAGGCG 60.816 66.667 0.00 0.00 0.00 5.52
2132 6649 1.764723 TCTGTCCATCTCGGCATCATT 59.235 47.619 0.00 0.00 33.14 2.57
2137 6654 3.931468 GTCCATCTCGGCATCATTATCAG 59.069 47.826 0.00 0.00 33.14 2.90
2148 6665 6.574269 CGGCATCATTATCAGGGAACATACTA 60.574 42.308 0.00 0.00 0.00 1.82
2149 6666 6.595716 GGCATCATTATCAGGGAACATACTAC 59.404 42.308 0.00 0.00 0.00 2.73
2150 6667 7.390027 GCATCATTATCAGGGAACATACTACT 58.610 38.462 0.00 0.00 0.00 2.57
2151 6668 7.547370 GCATCATTATCAGGGAACATACTACTC 59.453 40.741 0.00 0.00 0.00 2.59
2152 6669 7.540474 TCATTATCAGGGAACATACTACTCC 57.460 40.000 0.00 0.00 0.00 3.85
2153 6670 7.306013 TCATTATCAGGGAACATACTACTCCT 58.694 38.462 0.00 0.00 0.00 3.69
2154 6671 8.453681 TCATTATCAGGGAACATACTACTCCTA 58.546 37.037 0.00 0.00 0.00 2.94
2155 6672 8.524487 CATTATCAGGGAACATACTACTCCTAC 58.476 40.741 0.00 0.00 0.00 3.18
2156 6673 5.461516 TCAGGGAACATACTACTCCTACA 57.538 43.478 0.00 0.00 0.00 2.74
2157 6674 6.027025 TCAGGGAACATACTACTCCTACAT 57.973 41.667 0.00 0.00 0.00 2.29
2158 6675 7.157947 TCAGGGAACATACTACTCCTACATA 57.842 40.000 0.00 0.00 0.00 2.29
2159 6676 7.232188 TCAGGGAACATACTACTCCTACATAG 58.768 42.308 0.00 0.00 0.00 2.23
2160 6677 6.011481 AGGGAACATACTACTCCTACATAGC 58.989 44.000 0.00 0.00 0.00 2.97
2161 6678 5.773680 GGGAACATACTACTCCTACATAGCA 59.226 44.000 0.00 0.00 0.00 3.49
2162 6679 6.071840 GGGAACATACTACTCCTACATAGCAG 60.072 46.154 0.00 0.00 0.00 4.24
2163 6680 5.968528 ACATACTACTCCTACATAGCAGC 57.031 43.478 0.00 0.00 0.00 5.25
2164 6681 5.386060 ACATACTACTCCTACATAGCAGCA 58.614 41.667 0.00 0.00 0.00 4.41
2165 6682 5.475220 ACATACTACTCCTACATAGCAGCAG 59.525 44.000 0.00 0.00 0.00 4.24
2166 6683 2.625790 ACTACTCCTACATAGCAGCAGC 59.374 50.000 0.00 0.00 42.56 5.25
2167 6684 1.489481 ACTCCTACATAGCAGCAGCA 58.511 50.000 3.17 0.00 45.49 4.41
2168 6685 1.411977 ACTCCTACATAGCAGCAGCAG 59.588 52.381 3.17 0.00 45.49 4.24
2169 6686 1.685517 CTCCTACATAGCAGCAGCAGA 59.314 52.381 3.17 0.00 45.49 4.26
2200 6717 0.099968 CACCGCCATTGATGAGCTTG 59.900 55.000 0.00 0.00 0.00 4.01
2212 6729 3.591254 GAGCTTGGGACGAGCCGTT 62.591 63.158 4.92 0.00 41.37 4.44
2232 6749 5.631929 CCGTTTTAATCCTACTGTTTTTGGC 59.368 40.000 0.00 0.00 0.00 4.52
2261 6778 6.129561 CGACGCTTAATTAGGTGTTTTTGTTG 60.130 38.462 14.17 0.00 0.00 3.33
2286 6803 6.375736 GGAAAATTAAGCTTAGCTCCAAGAGT 59.624 38.462 7.36 0.00 38.25 3.24
2287 6804 7.553044 GGAAAATTAAGCTTAGCTCCAAGAGTA 59.447 37.037 7.36 0.00 38.25 2.59
2288 6805 7.851387 AAATTAAGCTTAGCTCCAAGAGTAC 57.149 36.000 7.36 0.00 38.25 2.73
2289 6806 3.512033 AAGCTTAGCTCCAAGAGTACG 57.488 47.619 7.36 0.00 38.25 3.67
2291 6808 1.135333 GCTTAGCTCCAAGAGTACGCT 59.865 52.381 0.00 0.00 34.88 5.07
2292 6809 2.417515 GCTTAGCTCCAAGAGTACGCTT 60.418 50.000 5.98 5.98 32.49 4.68
2293 6810 2.941453 TAGCTCCAAGAGTACGCTTG 57.059 50.000 26.83 26.83 43.74 4.01
2294 6811 1.257743 AGCTCCAAGAGTACGCTTGA 58.742 50.000 32.86 20.40 46.31 3.02
2296 6813 1.067495 GCTCCAAGAGTACGCTTGAGT 60.067 52.381 32.86 1.82 46.31 3.41
2298 6815 3.367087 GCTCCAAGAGTACGCTTGAGTAA 60.367 47.826 32.86 17.60 46.31 2.24
2299 6816 4.678309 GCTCCAAGAGTACGCTTGAGTAAT 60.678 45.833 32.86 0.00 46.31 1.89
2300 6817 4.995124 TCCAAGAGTACGCTTGAGTAATC 58.005 43.478 32.86 2.37 46.31 1.75
2301 6818 4.461431 TCCAAGAGTACGCTTGAGTAATCA 59.539 41.667 32.86 10.18 46.31 2.57
2302 6819 4.800993 CCAAGAGTACGCTTGAGTAATCAG 59.199 45.833 32.86 14.84 46.31 2.90
2303 6820 4.035278 AGAGTACGCTTGAGTAATCAGC 57.965 45.455 12.67 0.00 42.21 4.26
2354 6879 4.038883 GGATGTAAATACAGGCGAGGTAGT 59.961 45.833 0.00 0.00 39.92 2.73
2370 6895 1.002684 GTAGTAGTGATCCGGCGAGTG 60.003 57.143 9.30 0.00 0.00 3.51
2371 6896 0.393944 AGTAGTGATCCGGCGAGTGA 60.394 55.000 9.30 0.00 0.00 3.41
2372 6897 0.029567 GTAGTGATCCGGCGAGTGAG 59.970 60.000 9.30 0.00 0.00 3.51
2373 6898 0.393944 TAGTGATCCGGCGAGTGAGT 60.394 55.000 9.30 0.00 0.00 3.41
2422 6951 3.063510 ACTGATGGTGGTTGTGATGAG 57.936 47.619 0.00 0.00 0.00 2.90
2434 6980 1.899142 TGTGATGAGACCCGTTGATGA 59.101 47.619 0.00 0.00 0.00 2.92
2456 7002 8.935614 ATGATGATGATGATGAGGTTATGTTT 57.064 30.769 0.00 0.00 0.00 2.83
2464 7010 5.410924 TGATGAGGTTATGTTTCAGAGACG 58.589 41.667 0.00 0.00 0.00 4.18
2507 7053 1.801771 CTTTTCCCATTGCGTCGTGTA 59.198 47.619 0.00 0.00 0.00 2.90
2508 7054 1.149987 TTTCCCATTGCGTCGTGTAC 58.850 50.000 0.00 0.00 0.00 2.90
2509 7055 0.319083 TTCCCATTGCGTCGTGTACT 59.681 50.000 0.00 0.00 0.00 2.73
2510 7056 0.108992 TCCCATTGCGTCGTGTACTC 60.109 55.000 0.00 0.00 0.00 2.59
2523 7069 1.448013 GTACTCTCCGTTGCCTGCC 60.448 63.158 0.00 0.00 0.00 4.85
2658 7218 2.530497 GCGCGTGACAAGAACCACA 61.530 57.895 8.43 0.00 33.13 4.17
2659 7219 1.275657 CGCGTGACAAGAACCACAC 59.724 57.895 0.00 0.00 33.13 3.82
2661 7221 2.673074 CGTGACAAGAACCACACGT 58.327 52.632 0.00 0.00 46.75 4.49
2664 7224 1.519758 GTGACAAGAACCACACGTACG 59.480 52.381 15.01 15.01 33.72 3.67
2665 7225 1.404748 TGACAAGAACCACACGTACGA 59.595 47.619 24.41 0.00 0.00 3.43
2678 7262 5.964168 CCACACGTACGATCTTCTAAACTAG 59.036 44.000 24.41 0.00 0.00 2.57
2680 7264 6.682020 CACACGTACGATCTTCTAAACTAGTC 59.318 42.308 24.41 0.00 0.00 2.59
2681 7265 5.895348 CACGTACGATCTTCTAAACTAGTCG 59.105 44.000 24.41 0.00 0.00 4.18
2682 7266 4.897362 CGTACGATCTTCTAAACTAGTCGC 59.103 45.833 10.44 0.00 0.00 5.19
2683 7267 4.959596 ACGATCTTCTAAACTAGTCGCA 57.040 40.909 0.00 0.00 0.00 5.10
2684 7268 4.660105 ACGATCTTCTAAACTAGTCGCAC 58.340 43.478 0.00 0.00 0.00 5.34
2685 7269 4.036352 CGATCTTCTAAACTAGTCGCACC 58.964 47.826 0.00 0.00 0.00 5.01
2686 7270 3.482722 TCTTCTAAACTAGTCGCACCG 57.517 47.619 0.00 0.00 0.00 4.94
2690 7274 2.420022 TCTAAACTAGTCGCACCGTACC 59.580 50.000 0.00 0.00 0.00 3.34
2694 7309 1.915614 CTAGTCGCACCGTACCGTGT 61.916 60.000 14.50 0.00 36.08 4.49
2739 7380 4.918201 GGCGGCCGGAGAAGATGG 62.918 72.222 29.38 0.00 0.00 3.51
2740 7381 3.849951 GCGGCCGGAGAAGATGGA 61.850 66.667 29.38 0.00 0.00 3.41
2741 7382 3.142393 CGGCCGGAGAAGATGGAT 58.858 61.111 20.10 0.00 0.00 3.41
2742 7383 1.301244 CGGCCGGAGAAGATGGATG 60.301 63.158 20.10 0.00 0.00 3.51
2743 7384 1.072159 GGCCGGAGAAGATGGATGG 59.928 63.158 5.05 0.00 0.00 3.51
2744 7385 1.410850 GGCCGGAGAAGATGGATGGA 61.411 60.000 5.05 0.00 0.00 3.41
2745 7386 0.689623 GCCGGAGAAGATGGATGGAT 59.310 55.000 5.05 0.00 0.00 3.41
2746 7387 1.610102 GCCGGAGAAGATGGATGGATG 60.610 57.143 5.05 0.00 0.00 3.51
2747 7388 1.973515 CCGGAGAAGATGGATGGATGA 59.026 52.381 0.00 0.00 0.00 2.92
2748 7389 2.369860 CCGGAGAAGATGGATGGATGAA 59.630 50.000 0.00 0.00 0.00 2.57
2749 7390 3.556633 CCGGAGAAGATGGATGGATGAAG 60.557 52.174 0.00 0.00 0.00 3.02
2750 7391 3.323115 CGGAGAAGATGGATGGATGAAGA 59.677 47.826 0.00 0.00 0.00 2.87
2751 7392 4.640364 GGAGAAGATGGATGGATGAAGAC 58.360 47.826 0.00 0.00 0.00 3.01
2752 7393 4.504689 GGAGAAGATGGATGGATGAAGACC 60.505 50.000 0.00 0.00 0.00 3.85
2753 7394 4.042884 AGAAGATGGATGGATGAAGACCA 58.957 43.478 0.00 0.00 41.83 4.02
2755 7396 4.368565 AGATGGATGGATGAAGACCATG 57.631 45.455 0.00 0.00 46.48 3.66
2757 7398 1.233019 GGATGGATGAAGACCATGCG 58.767 55.000 0.00 0.00 46.48 4.73
2758 7399 1.233019 GATGGATGAAGACCATGCGG 58.767 55.000 0.00 0.00 46.48 5.69
2759 7400 0.820891 ATGGATGAAGACCATGCGGC 60.821 55.000 0.00 0.00 45.35 6.53
2760 7401 2.189499 GGATGAAGACCATGCGGCC 61.189 63.158 0.00 0.00 35.17 6.13
2761 7402 2.514592 ATGAAGACCATGCGGCCG 60.515 61.111 24.05 24.05 33.39 6.13
2762 7403 4.776322 TGAAGACCATGCGGCCGG 62.776 66.667 29.38 12.94 34.57 6.13
2763 7404 4.467084 GAAGACCATGCGGCCGGA 62.467 66.667 29.38 27.51 34.57 5.14
2764 7405 4.473520 AAGACCATGCGGCCGGAG 62.474 66.667 29.38 16.40 34.57 4.63
2766 7407 4.899239 GACCATGCGGCCGGAGAG 62.899 72.222 29.38 21.76 34.57 3.20
2769 7410 3.933722 CATGCGGCCGGAGAGGAT 61.934 66.667 29.38 5.35 45.00 3.24
2770 7411 3.933722 ATGCGGCCGGAGAGGATG 61.934 66.667 29.38 0.00 45.00 3.51
2773 7414 3.610669 CGGCCGGAGAGGATGGAG 61.611 72.222 20.10 0.00 45.00 3.86
2774 7415 2.444895 GGCCGGAGAGGATGGAGT 60.445 66.667 5.05 0.00 45.00 3.85
2775 7416 2.801631 GGCCGGAGAGGATGGAGTG 61.802 68.421 5.05 0.00 45.00 3.51
2776 7417 1.758514 GCCGGAGAGGATGGAGTGA 60.759 63.158 5.05 0.00 45.00 3.41
2777 7418 1.330655 GCCGGAGAGGATGGAGTGAA 61.331 60.000 5.05 0.00 45.00 3.18
2778 7419 0.749649 CCGGAGAGGATGGAGTGAAG 59.250 60.000 0.00 0.00 45.00 3.02
2779 7420 0.749649 CGGAGAGGATGGAGTGAAGG 59.250 60.000 0.00 0.00 0.00 3.46
2780 7421 0.467804 GGAGAGGATGGAGTGAAGGC 59.532 60.000 0.00 0.00 0.00 4.35
2781 7422 0.103937 GAGAGGATGGAGTGAAGGCG 59.896 60.000 0.00 0.00 0.00 5.52
2782 7423 0.324738 AGAGGATGGAGTGAAGGCGA 60.325 55.000 0.00 0.00 0.00 5.54
2783 7424 0.537188 GAGGATGGAGTGAAGGCGAA 59.463 55.000 0.00 0.00 0.00 4.70
2784 7425 0.539051 AGGATGGAGTGAAGGCGAAG 59.461 55.000 0.00 0.00 0.00 3.79
2887 7534 1.079127 GTGGTGGTGGTCCAGATCG 60.079 63.158 0.00 0.00 45.24 3.69
2888 7535 1.229051 TGGTGGTGGTCCAGATCGA 60.229 57.895 0.00 0.00 45.24 3.59
2889 7536 0.617535 TGGTGGTGGTCCAGATCGAT 60.618 55.000 0.00 0.00 45.24 3.59
2890 7537 0.105039 GGTGGTGGTCCAGATCGATC 59.895 60.000 17.91 17.91 45.24 3.69
2891 7538 1.115467 GTGGTGGTCCAGATCGATCT 58.885 55.000 22.32 22.32 45.24 2.75
2892 7539 1.067821 GTGGTGGTCCAGATCGATCTC 59.932 57.143 25.00 14.19 45.24 2.75
2893 7540 0.676736 GGTGGTCCAGATCGATCTCC 59.323 60.000 25.00 22.01 34.22 3.71
2894 7541 0.312416 GTGGTCCAGATCGATCTCCG 59.688 60.000 25.00 17.27 34.22 4.63
2895 7542 1.287503 GGTCCAGATCGATCTCCGC 59.712 63.158 25.00 16.08 38.37 5.54
2896 7543 1.175983 GGTCCAGATCGATCTCCGCT 61.176 60.000 25.00 1.18 38.37 5.52
2897 7544 0.239879 GTCCAGATCGATCTCCGCTC 59.760 60.000 25.00 10.21 38.37 5.03
2898 7545 0.891449 TCCAGATCGATCTCCGCTCC 60.891 60.000 25.00 0.00 34.22 4.70
2899 7546 1.208870 CAGATCGATCTCCGCTCCG 59.791 63.158 25.00 8.52 34.22 4.63
2900 7547 2.126657 GATCGATCTCCGCTCCGC 60.127 66.667 18.29 0.00 38.37 5.54
2901 7548 2.596046 ATCGATCTCCGCTCCGCT 60.596 61.111 0.00 0.00 38.37 5.52
2902 7549 2.521733 GATCGATCTCCGCTCCGCTC 62.522 65.000 18.29 0.00 38.37 5.03
2903 7550 3.283684 CGATCTCCGCTCCGCTCT 61.284 66.667 0.00 0.00 0.00 4.09
2904 7551 2.334653 GATCTCCGCTCCGCTCTG 59.665 66.667 0.00 0.00 0.00 3.35
2905 7552 3.839642 GATCTCCGCTCCGCTCTGC 62.840 68.421 0.00 0.00 0.00 4.26
2960 7607 3.237741 ATGGGCCTCTCGCTAGCC 61.238 66.667 9.66 0.00 46.37 3.93
2988 7635 1.490693 ATCGTCGTCGCCATGCAATC 61.491 55.000 0.00 0.00 36.96 2.67
3036 7692 0.173255 GGCGCCATTACTGCAACAAT 59.827 50.000 24.80 0.00 0.00 2.71
3048 7704 4.569943 ACTGCAACAATACTTCATCGACT 58.430 39.130 0.00 0.00 0.00 4.18
3057 7713 8.453238 ACAATACTTCATCGACTCATAGTAGT 57.547 34.615 0.00 0.00 0.00 2.73
3058 7714 9.557061 ACAATACTTCATCGACTCATAGTAGTA 57.443 33.333 0.00 0.00 0.00 1.82
3060 7716 9.781633 AATACTTCATCGACTCATAGTAGTAGT 57.218 33.333 0.00 0.00 0.00 2.73
3084 7740 3.190744 GCAATGATTCATCGGCTCATCAT 59.809 43.478 13.21 0.00 37.87 2.45
3085 7741 4.672024 GCAATGATTCATCGGCTCATCATC 60.672 45.833 13.21 0.00 35.70 2.92
3086 7742 3.756933 TGATTCATCGGCTCATCATCA 57.243 42.857 0.00 0.00 0.00 3.07
3102 7758 3.722295 CACGCAACCAACGCCGAT 61.722 61.111 0.00 0.00 0.00 4.18
3103 7759 3.419759 ACGCAACCAACGCCGATC 61.420 61.111 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.805711 TCATACGCGTGGCTGACATG 60.806 55.000 24.59 15.66 39.17 3.21
27 28 0.528466 CTCATACGCGTGGCTGACAT 60.528 55.000 24.59 1.49 0.00 3.06
28 29 1.153842 CTCATACGCGTGGCTGACA 60.154 57.895 24.59 0.00 0.00 3.58
29 30 1.878522 CCTCATACGCGTGGCTGAC 60.879 63.158 24.59 0.00 0.00 3.51
30 31 2.279502 GACCTCATACGCGTGGCTGA 62.280 60.000 24.59 19.61 0.00 4.26
32 33 2.348104 TGACCTCATACGCGTGGCT 61.348 57.895 24.59 3.10 0.00 4.75
33 34 2.165301 GTGACCTCATACGCGTGGC 61.165 63.158 24.59 7.32 0.00 5.01
35 36 1.872234 CGGTGACCTCATACGCGTG 60.872 63.158 24.59 6.12 0.00 5.34
36 37 1.870055 AACGGTGACCTCATACGCGT 61.870 55.000 19.17 19.17 34.14 6.01
48 49 0.391228 TAGCTTGCAGTCAACGGTGA 59.609 50.000 0.00 0.00 0.00 4.02
49 50 0.792640 CTAGCTTGCAGTCAACGGTG 59.207 55.000 0.00 0.00 0.00 4.94
50 51 0.393077 ACTAGCTTGCAGTCAACGGT 59.607 50.000 0.00 0.00 0.00 4.83
51 52 1.512926 AACTAGCTTGCAGTCAACGG 58.487 50.000 0.00 0.00 0.00 4.44
52 53 3.123621 CCTAAACTAGCTTGCAGTCAACG 59.876 47.826 0.00 0.00 0.00 4.10
53 54 4.065789 ACCTAAACTAGCTTGCAGTCAAC 58.934 43.478 0.00 0.00 0.00 3.18
54 55 4.351874 ACCTAAACTAGCTTGCAGTCAA 57.648 40.909 0.00 0.00 0.00 3.18
55 56 4.351874 AACCTAAACTAGCTTGCAGTCA 57.648 40.909 0.00 0.00 0.00 3.41
56 57 5.690997 AAAACCTAAACTAGCTTGCAGTC 57.309 39.130 0.00 0.00 0.00 3.51
57 58 5.828328 AGAAAAACCTAAACTAGCTTGCAGT 59.172 36.000 0.00 0.00 0.00 4.40
58 59 6.319141 AGAAAAACCTAAACTAGCTTGCAG 57.681 37.500 0.00 0.00 0.00 4.41
59 60 6.709018 AAGAAAAACCTAAACTAGCTTGCA 57.291 33.333 0.00 0.00 0.00 4.08
60 61 8.420374 AAAAAGAAAAACCTAAACTAGCTTGC 57.580 30.769 0.00 0.00 0.00 4.01
86 87 9.755064 CGATATTTCGTCTTGTTGACTAAAATT 57.245 29.630 0.00 0.00 41.51 1.82
129 130 9.016623 CGAACTCATTTACGTTCAGACATATAA 57.983 33.333 0.00 0.00 39.49 0.98
130 131 7.646526 CCGAACTCATTTACGTTCAGACATATA 59.353 37.037 0.00 0.00 39.49 0.86
131 132 6.475727 CCGAACTCATTTACGTTCAGACATAT 59.524 38.462 0.00 0.00 39.49 1.78
132 133 5.803461 CCGAACTCATTTACGTTCAGACATA 59.197 40.000 0.00 0.00 39.49 2.29
133 134 4.625742 CCGAACTCATTTACGTTCAGACAT 59.374 41.667 0.00 0.00 39.49 3.06
134 135 3.985279 CCGAACTCATTTACGTTCAGACA 59.015 43.478 0.00 0.00 39.49 3.41
135 136 3.181533 GCCGAACTCATTTACGTTCAGAC 60.182 47.826 0.00 0.00 39.49 3.51
136 137 2.991190 GCCGAACTCATTTACGTTCAGA 59.009 45.455 0.00 0.00 39.49 3.27
137 138 2.093783 GGCCGAACTCATTTACGTTCAG 59.906 50.000 0.00 0.00 39.49 3.02
138 139 2.070783 GGCCGAACTCATTTACGTTCA 58.929 47.619 0.00 0.00 39.49 3.18
139 140 1.395954 GGGCCGAACTCATTTACGTTC 59.604 52.381 0.00 0.00 36.92 3.95
140 141 1.002773 AGGGCCGAACTCATTTACGTT 59.997 47.619 0.00 0.00 0.00 3.99
141 142 0.611714 AGGGCCGAACTCATTTACGT 59.388 50.000 0.00 0.00 0.00 3.57
142 143 1.134788 AGAGGGCCGAACTCATTTACG 60.135 52.381 9.79 0.00 37.43 3.18
143 144 2.693267 AGAGGGCCGAACTCATTTAC 57.307 50.000 9.79 0.00 37.43 2.01
144 145 3.343617 CAAAGAGGGCCGAACTCATTTA 58.656 45.455 9.79 0.00 37.43 1.40
145 146 2.162681 CAAAGAGGGCCGAACTCATTT 58.837 47.619 9.79 5.19 37.43 2.32
146 147 1.826385 CAAAGAGGGCCGAACTCATT 58.174 50.000 9.79 1.78 37.43 2.57
147 148 0.678048 GCAAAGAGGGCCGAACTCAT 60.678 55.000 9.79 0.00 37.43 2.90
148 149 1.302511 GCAAAGAGGGCCGAACTCA 60.303 57.895 9.79 0.00 37.43 3.41
149 150 0.678048 ATGCAAAGAGGGCCGAACTC 60.678 55.000 0.00 0.00 35.20 3.01
150 151 0.962356 CATGCAAAGAGGGCCGAACT 60.962 55.000 0.00 0.00 0.00 3.01
151 152 0.960364 TCATGCAAAGAGGGCCGAAC 60.960 55.000 0.00 0.00 0.00 3.95
152 153 0.251121 TTCATGCAAAGAGGGCCGAA 60.251 50.000 0.00 0.00 0.00 4.30
153 154 0.251121 TTTCATGCAAAGAGGGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
154 155 0.819582 ATTTCATGCAAAGAGGGCCG 59.180 50.000 0.00 0.00 0.00 6.13
155 156 2.736400 CGAATTTCATGCAAAGAGGGCC 60.736 50.000 0.00 0.00 0.00 5.80
156 157 2.094545 ACGAATTTCATGCAAAGAGGGC 60.095 45.455 0.00 0.00 0.00 5.19
157 158 3.428045 GGACGAATTTCATGCAAAGAGGG 60.428 47.826 0.00 0.00 0.00 4.30
158 159 3.191162 TGGACGAATTTCATGCAAAGAGG 59.809 43.478 0.00 0.00 0.00 3.69
159 160 4.083110 ACTGGACGAATTTCATGCAAAGAG 60.083 41.667 0.00 0.00 0.00 2.85
160 161 3.820467 ACTGGACGAATTTCATGCAAAGA 59.180 39.130 0.00 0.00 0.00 2.52
161 162 3.916172 CACTGGACGAATTTCATGCAAAG 59.084 43.478 0.00 0.00 0.00 2.77
162 163 3.856638 GCACTGGACGAATTTCATGCAAA 60.857 43.478 0.00 0.00 0.00 3.68
163 164 2.351641 GCACTGGACGAATTTCATGCAA 60.352 45.455 0.00 0.00 0.00 4.08
164 165 1.199789 GCACTGGACGAATTTCATGCA 59.800 47.619 0.00 0.00 0.00 3.96
165 166 1.791555 CGCACTGGACGAATTTCATGC 60.792 52.381 0.00 0.00 0.00 4.06
166 167 1.464608 ACGCACTGGACGAATTTCATG 59.535 47.619 0.00 0.00 0.00 3.07
167 168 1.808411 ACGCACTGGACGAATTTCAT 58.192 45.000 0.00 0.00 0.00 2.57
168 169 1.529438 GAACGCACTGGACGAATTTCA 59.471 47.619 0.00 0.00 0.00 2.69
169 170 1.461888 CGAACGCACTGGACGAATTTC 60.462 52.381 0.00 0.00 0.00 2.17
170 171 0.511221 CGAACGCACTGGACGAATTT 59.489 50.000 0.00 0.00 0.00 1.82
171 172 0.319211 TCGAACGCACTGGACGAATT 60.319 50.000 0.00 0.00 0.00 2.17
172 173 0.319211 TTCGAACGCACTGGACGAAT 60.319 50.000 0.00 0.00 37.89 3.34
173 174 0.319211 ATTCGAACGCACTGGACGAA 60.319 50.000 0.00 0.00 44.56 3.85
174 175 0.731514 GATTCGAACGCACTGGACGA 60.732 55.000 0.00 0.00 0.00 4.20
175 176 1.683790 GGATTCGAACGCACTGGACG 61.684 60.000 0.00 0.00 0.00 4.79
176 177 1.359459 GGGATTCGAACGCACTGGAC 61.359 60.000 0.00 0.00 0.00 4.02
177 178 1.079405 GGGATTCGAACGCACTGGA 60.079 57.895 0.00 0.00 0.00 3.86
178 179 0.744414 ATGGGATTCGAACGCACTGG 60.744 55.000 15.73 0.00 33.42 4.00
179 180 1.086696 AATGGGATTCGAACGCACTG 58.913 50.000 15.73 0.00 33.42 3.66
180 181 1.821216 AAATGGGATTCGAACGCACT 58.179 45.000 15.73 6.37 33.42 4.40
181 182 3.750639 TTAAATGGGATTCGAACGCAC 57.249 42.857 15.73 7.25 33.42 5.34
182 183 4.768130 TTTTAAATGGGATTCGAACGCA 57.232 36.364 15.74 15.74 34.94 5.24
183 184 9.061610 CATATATTTTAAATGGGATTCGAACGC 57.938 33.333 0.00 3.96 0.00 4.84
184 185 9.061610 GCATATATTTTAAATGGGATTCGAACG 57.938 33.333 0.00 0.00 0.00 3.95
185 186 9.061610 CGCATATATTTTAAATGGGATTCGAAC 57.938 33.333 0.00 0.00 36.08 3.95
186 187 8.240682 CCGCATATATTTTAAATGGGATTCGAA 58.759 33.333 0.00 0.00 36.08 3.71
187 188 7.608376 TCCGCATATATTTTAAATGGGATTCGA 59.392 33.333 0.00 0.00 36.08 3.71
188 189 7.696453 GTCCGCATATATTTTAAATGGGATTCG 59.304 37.037 0.00 0.00 36.08 3.34
189 190 8.519526 TGTCCGCATATATTTTAAATGGGATTC 58.480 33.333 0.00 0.00 36.08 2.52
190 191 8.303876 GTGTCCGCATATATTTTAAATGGGATT 58.696 33.333 0.00 0.00 36.08 3.01
191 192 7.361713 CGTGTCCGCATATATTTTAAATGGGAT 60.362 37.037 0.00 0.00 36.08 3.85
192 193 6.072948 CGTGTCCGCATATATTTTAAATGGGA 60.073 38.462 0.00 0.25 36.08 4.37
193 194 6.072948 TCGTGTCCGCATATATTTTAAATGGG 60.073 38.462 0.00 0.00 34.38 4.00
194 195 6.893759 TCGTGTCCGCATATATTTTAAATGG 58.106 36.000 0.00 0.00 0.00 3.16
195 196 8.948853 AATCGTGTCCGCATATATTTTAAATG 57.051 30.769 0.00 0.00 0.00 2.32
197 198 9.478768 TCTAATCGTGTCCGCATATATTTTAAA 57.521 29.630 0.00 0.00 0.00 1.52
198 199 9.647797 ATCTAATCGTGTCCGCATATATTTTAA 57.352 29.630 0.00 0.00 0.00 1.52
199 200 9.083080 CATCTAATCGTGTCCGCATATATTTTA 57.917 33.333 0.00 0.00 0.00 1.52
200 201 7.064609 CCATCTAATCGTGTCCGCATATATTTT 59.935 37.037 0.00 0.00 0.00 1.82
201 202 6.535150 CCATCTAATCGTGTCCGCATATATTT 59.465 38.462 0.00 0.00 0.00 1.40
202 203 6.042777 CCATCTAATCGTGTCCGCATATATT 58.957 40.000 0.00 0.00 0.00 1.28
203 204 5.359860 TCCATCTAATCGTGTCCGCATATAT 59.640 40.000 0.00 0.00 0.00 0.86
204 205 4.703093 TCCATCTAATCGTGTCCGCATATA 59.297 41.667 0.00 0.00 0.00 0.86
205 206 3.509967 TCCATCTAATCGTGTCCGCATAT 59.490 43.478 0.00 0.00 0.00 1.78
206 207 2.888414 TCCATCTAATCGTGTCCGCATA 59.112 45.455 0.00 0.00 0.00 3.14
207 208 1.686587 TCCATCTAATCGTGTCCGCAT 59.313 47.619 0.00 0.00 0.00 4.73
208 209 1.107945 TCCATCTAATCGTGTCCGCA 58.892 50.000 0.00 0.00 0.00 5.69
209 210 1.859080 GTTCCATCTAATCGTGTCCGC 59.141 52.381 0.00 0.00 0.00 5.54
210 211 3.116300 CAGTTCCATCTAATCGTGTCCG 58.884 50.000 0.00 0.00 0.00 4.79
211 212 4.113354 GACAGTTCCATCTAATCGTGTCC 58.887 47.826 0.00 0.00 0.00 4.02
212 213 4.113354 GGACAGTTCCATCTAATCGTGTC 58.887 47.826 0.00 0.00 42.30 3.67
213 214 4.124851 GGACAGTTCCATCTAATCGTGT 57.875 45.455 0.00 0.00 42.30 4.49
225 226 8.711457 CATTTTAAATGTGATTTGGACAGTTCC 58.289 33.333 9.33 0.00 43.19 3.62
226 227 9.260002 ACATTTTAAATGTGATTTGGACAGTTC 57.740 29.630 20.76 0.00 33.87 3.01
230 231 9.149225 GCATACATTTTAAATGTGATTTGGACA 57.851 29.630 27.45 9.45 33.82 4.02
231 232 8.320295 CGCATACATTTTAAATGTGATTTGGAC 58.680 33.333 27.45 11.01 33.90 4.02
232 233 8.246871 TCGCATACATTTTAAATGTGATTTGGA 58.753 29.630 27.45 16.03 35.74 3.53
233 234 8.320295 GTCGCATACATTTTAAATGTGATTTGG 58.680 33.333 27.45 14.45 40.92 3.28
234 235 9.075519 AGTCGCATACATTTTAAATGTGATTTG 57.924 29.630 27.45 20.03 40.92 2.32
235 236 9.075519 CAGTCGCATACATTTTAAATGTGATTT 57.924 29.630 27.45 11.08 40.92 2.17
236 237 8.458052 TCAGTCGCATACATTTTAAATGTGATT 58.542 29.630 27.45 13.47 40.92 2.57
237 238 7.984391 TCAGTCGCATACATTTTAAATGTGAT 58.016 30.769 27.45 16.16 40.92 3.06
238 239 7.371126 TCAGTCGCATACATTTTAAATGTGA 57.629 32.000 27.45 16.10 37.70 3.58
239 240 8.619146 AATCAGTCGCATACATTTTAAATGTG 57.381 30.769 27.45 15.97 33.76 3.21
244 245 9.549509 GTTGTTAATCAGTCGCATACATTTTAA 57.450 29.630 0.00 0.00 0.00 1.52
245 246 8.722394 TGTTGTTAATCAGTCGCATACATTTTA 58.278 29.630 0.00 0.00 0.00 1.52
246 247 7.589395 TGTTGTTAATCAGTCGCATACATTTT 58.411 30.769 0.00 0.00 0.00 1.82
247 248 7.139896 TGTTGTTAATCAGTCGCATACATTT 57.860 32.000 0.00 0.00 0.00 2.32
248 249 6.735678 TGTTGTTAATCAGTCGCATACATT 57.264 33.333 0.00 0.00 0.00 2.71
249 250 6.735678 TTGTTGTTAATCAGTCGCATACAT 57.264 33.333 0.00 0.00 0.00 2.29
250 251 6.017852 TGTTTGTTGTTAATCAGTCGCATACA 60.018 34.615 0.00 0.00 0.00 2.29
251 252 6.367421 TGTTTGTTGTTAATCAGTCGCATAC 58.633 36.000 0.00 0.00 0.00 2.39
252 253 6.546972 TGTTTGTTGTTAATCAGTCGCATA 57.453 33.333 0.00 0.00 0.00 3.14
253 254 5.431420 TGTTTGTTGTTAATCAGTCGCAT 57.569 34.783 0.00 0.00 0.00 4.73
254 255 4.884458 TGTTTGTTGTTAATCAGTCGCA 57.116 36.364 0.00 0.00 0.00 5.10
255 256 5.270853 ACTTGTTTGTTGTTAATCAGTCGC 58.729 37.500 0.00 0.00 0.00 5.19
256 257 5.907391 GGACTTGTTTGTTGTTAATCAGTCG 59.093 40.000 0.00 0.00 0.00 4.18
257 258 6.691388 GTGGACTTGTTTGTTGTTAATCAGTC 59.309 38.462 0.00 0.00 0.00 3.51
258 259 6.151985 TGTGGACTTGTTTGTTGTTAATCAGT 59.848 34.615 0.00 0.00 0.00 3.41
259 260 6.472163 GTGTGGACTTGTTTGTTGTTAATCAG 59.528 38.462 0.00 0.00 0.00 2.90
260 261 6.071896 TGTGTGGACTTGTTTGTTGTTAATCA 60.072 34.615 0.00 0.00 0.00 2.57
261 262 6.326375 TGTGTGGACTTGTTTGTTGTTAATC 58.674 36.000 0.00 0.00 0.00 1.75
262 263 6.274157 TGTGTGGACTTGTTTGTTGTTAAT 57.726 33.333 0.00 0.00 0.00 1.40
263 264 5.707242 TGTGTGGACTTGTTTGTTGTTAA 57.293 34.783 0.00 0.00 0.00 2.01
676 677 2.819608 GTTGGGTGTGCACTATGAATGT 59.180 45.455 19.41 0.00 0.00 2.71
677 678 2.164219 GGTTGGGTGTGCACTATGAATG 59.836 50.000 19.41 0.00 0.00 2.67
678 679 2.446435 GGTTGGGTGTGCACTATGAAT 58.554 47.619 19.41 0.00 0.00 2.57
679 680 1.546773 GGGTTGGGTGTGCACTATGAA 60.547 52.381 19.41 3.18 0.00 2.57
680 681 0.037590 GGGTTGGGTGTGCACTATGA 59.962 55.000 19.41 0.00 0.00 2.15
702 703 3.256960 TGGACTTGTGAGGGGGCC 61.257 66.667 0.00 0.00 0.00 5.80
709 710 2.279851 CGTGCGGTGGACTTGTGA 60.280 61.111 0.00 0.00 0.00 3.58
710 711 2.279851 TCGTGCGGTGGACTTGTG 60.280 61.111 0.00 0.00 0.00 3.33
711 712 2.279918 GTCGTGCGGTGGACTTGT 60.280 61.111 0.00 0.00 0.00 3.16
727 5186 1.573857 AGAGTTGTTTTCCTTGGGGGT 59.426 47.619 0.00 0.00 36.25 4.95
871 5333 4.691359 CTGGGCTGGGCTTGGCTT 62.691 66.667 4.29 0.00 0.00 4.35
992 5475 2.821685 CGGAAGCCATGGATCGGA 59.178 61.111 18.40 0.00 0.00 4.55
1194 5683 4.101448 AGCATGGTGGAGACGGCC 62.101 66.667 0.00 0.00 0.00 6.13
1371 5866 1.671054 CACCACCGCATCCTTCGTT 60.671 57.895 0.00 0.00 0.00 3.85
1629 6130 4.222847 GGGGTCGGCGATGGAGTC 62.223 72.222 14.79 0.00 0.00 3.36
1734 6235 4.026357 GGAGGTGGAGGAGGGGGT 62.026 72.222 0.00 0.00 0.00 4.95
1737 6238 2.041405 GGAGGAGGTGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
2034 6535 0.322906 CCACCTTCCCCTGCTTCTTC 60.323 60.000 0.00 0.00 0.00 2.87
2055 6556 2.509561 GCGGTCGCCTCCTTCTTC 60.510 66.667 3.73 0.00 34.56 2.87
2132 6649 7.157947 TGTAGGAGTAGTATGTTCCCTGATA 57.842 40.000 0.00 0.00 0.00 2.15
2137 6654 5.773680 TGCTATGTAGGAGTAGTATGTTCCC 59.226 44.000 0.00 0.00 0.00 3.97
2148 6665 1.411977 CTGCTGCTGCTATGTAGGAGT 59.588 52.381 17.00 0.00 42.88 3.85
2149 6666 1.685517 TCTGCTGCTGCTATGTAGGAG 59.314 52.381 17.00 4.40 43.65 3.69
2150 6667 1.410517 GTCTGCTGCTGCTATGTAGGA 59.589 52.381 17.00 1.60 40.48 2.94
2151 6668 1.137675 TGTCTGCTGCTGCTATGTAGG 59.862 52.381 17.00 0.00 40.48 3.18
2152 6669 2.200067 GTGTCTGCTGCTGCTATGTAG 58.800 52.381 17.00 5.39 40.48 2.74
2153 6670 1.134699 GGTGTCTGCTGCTGCTATGTA 60.135 52.381 17.00 0.00 40.48 2.29
2154 6671 0.392193 GGTGTCTGCTGCTGCTATGT 60.392 55.000 17.00 0.00 40.48 2.29
2155 6672 0.392060 TGGTGTCTGCTGCTGCTATG 60.392 55.000 17.00 7.22 40.48 2.23
2156 6673 0.392193 GTGGTGTCTGCTGCTGCTAT 60.392 55.000 17.00 0.00 40.48 2.97
2157 6674 1.004560 GTGGTGTCTGCTGCTGCTA 60.005 57.895 17.00 2.17 40.48 3.49
2158 6675 2.281345 GTGGTGTCTGCTGCTGCT 60.281 61.111 17.00 0.00 40.48 4.24
2159 6676 3.360340 GGTGGTGTCTGCTGCTGC 61.360 66.667 8.89 8.89 40.20 5.25
2160 6677 2.111669 TGGTGGTGTCTGCTGCTG 59.888 61.111 0.00 0.00 0.00 4.41
2161 6678 2.111878 GTGGTGGTGTCTGCTGCT 59.888 61.111 0.00 0.00 0.00 4.24
2162 6679 2.980233 GGTGGTGGTGTCTGCTGC 60.980 66.667 0.00 0.00 0.00 5.25
2163 6680 1.893808 GTGGTGGTGGTGTCTGCTG 60.894 63.158 0.00 0.00 0.00 4.41
2164 6681 2.374525 TGTGGTGGTGGTGTCTGCT 61.375 57.895 0.00 0.00 0.00 4.24
2165 6682 2.186826 GTGTGGTGGTGGTGTCTGC 61.187 63.158 0.00 0.00 0.00 4.26
2166 6683 1.525995 GGTGTGGTGGTGGTGTCTG 60.526 63.158 0.00 0.00 0.00 3.51
2167 6684 2.915869 GGTGTGGTGGTGGTGTCT 59.084 61.111 0.00 0.00 0.00 3.41
2168 6685 2.590575 CGGTGTGGTGGTGGTGTC 60.591 66.667 0.00 0.00 0.00 3.67
2169 6686 4.868116 GCGGTGTGGTGGTGGTGT 62.868 66.667 0.00 0.00 0.00 4.16
2200 6717 1.012086 GGATTAAAACGGCTCGTCCC 58.988 55.000 0.69 0.00 39.99 4.46
2212 6729 6.293735 CGTCAGCCAAAAACAGTAGGATTAAA 60.294 38.462 0.00 0.00 0.00 1.52
2232 6749 3.508762 ACACCTAATTAAGCGTCGTCAG 58.491 45.455 0.00 0.00 0.00 3.51
2261 6778 6.375736 ACTCTTGGAGCTAAGCTTAATTTTCC 59.624 38.462 7.74 11.71 39.88 3.13
2286 6803 2.540515 GCAGCTGATTACTCAAGCGTA 58.459 47.619 20.43 0.00 33.47 4.42
2287 6804 1.363744 GCAGCTGATTACTCAAGCGT 58.636 50.000 20.43 0.00 33.47 5.07
2288 6805 0.299895 CGCAGCTGATTACTCAAGCG 59.700 55.000 20.43 5.52 39.31 4.68
2289 6806 1.061711 CACGCAGCTGATTACTCAAGC 59.938 52.381 20.43 0.00 0.00 4.01
2291 6808 2.610433 CTCACGCAGCTGATTACTCAA 58.390 47.619 20.43 0.00 0.00 3.02
2292 6809 1.134995 CCTCACGCAGCTGATTACTCA 60.135 52.381 20.43 0.00 0.00 3.41
2293 6810 1.135139 TCCTCACGCAGCTGATTACTC 59.865 52.381 20.43 0.00 0.00 2.59
2294 6811 1.134965 GTCCTCACGCAGCTGATTACT 60.135 52.381 20.43 0.00 0.00 2.24
2296 6813 0.894835 TGTCCTCACGCAGCTGATTA 59.105 50.000 20.43 0.00 0.00 1.75
2298 6815 0.390866 CTTGTCCTCACGCAGCTGAT 60.391 55.000 20.43 0.42 0.00 2.90
2299 6816 1.005748 CTTGTCCTCACGCAGCTGA 60.006 57.895 20.43 0.00 0.00 4.26
2300 6817 0.038251 TACTTGTCCTCACGCAGCTG 60.038 55.000 10.11 10.11 0.00 4.24
2301 6818 0.679505 TTACTTGTCCTCACGCAGCT 59.320 50.000 0.00 0.00 0.00 4.24
2302 6819 0.790814 GTTACTTGTCCTCACGCAGC 59.209 55.000 0.00 0.00 0.00 5.25
2303 6820 2.440539 AGTTACTTGTCCTCACGCAG 57.559 50.000 0.00 0.00 0.00 5.18
2354 6879 0.393944 ACTCACTCGCCGGATCACTA 60.394 55.000 5.05 0.00 0.00 2.74
2370 6895 4.024809 ACGCACTAGCAAAAAGAAGAACTC 60.025 41.667 0.00 0.00 42.27 3.01
2371 6896 3.877508 ACGCACTAGCAAAAAGAAGAACT 59.122 39.130 0.00 0.00 42.27 3.01
2372 6897 3.968724 CACGCACTAGCAAAAAGAAGAAC 59.031 43.478 0.00 0.00 42.27 3.01
2373 6898 3.874543 TCACGCACTAGCAAAAAGAAGAA 59.125 39.130 0.00 0.00 42.27 2.52
2422 6951 3.732212 TCATCATCATCATCAACGGGTC 58.268 45.455 0.00 0.00 0.00 4.46
2434 6980 8.215736 TCTGAAACATAACCTCATCATCATCAT 58.784 33.333 0.00 0.00 0.00 2.45
2456 7002 2.319011 GATGCGTACGCCGTCTCTGA 62.319 60.000 35.11 16.13 41.09 3.27
2464 7010 1.563173 GAATTCCGATGCGTACGCC 59.437 57.895 35.11 20.74 41.09 5.68
2507 7053 2.925170 AGGCAGGCAACGGAGAGT 60.925 61.111 0.00 0.00 46.39 3.24
2508 7054 2.435586 CAGGCAGGCAACGGAGAG 60.436 66.667 0.00 0.00 46.39 3.20
2509 7055 2.337879 AAACAGGCAGGCAACGGAGA 62.338 55.000 0.00 0.00 46.39 3.71
2510 7056 1.898574 AAACAGGCAGGCAACGGAG 60.899 57.895 0.00 0.00 46.39 4.63
2523 7069 2.423185 TCAGCACCAGACAAACAAACAG 59.577 45.455 0.00 0.00 0.00 3.16
2550 7104 5.266242 CAGAACTCAACTTTTCAGTTTCCG 58.734 41.667 0.00 0.00 40.66 4.30
2658 7218 5.501574 GCGACTAGTTTAGAAGATCGTACGT 60.502 44.000 16.05 2.33 0.00 3.57
2659 7219 4.897362 GCGACTAGTTTAGAAGATCGTACG 59.103 45.833 9.53 9.53 0.00 3.67
2661 7221 5.220739 GGTGCGACTAGTTTAGAAGATCGTA 60.221 44.000 0.00 0.00 0.00 3.43
2664 7224 4.036352 CGGTGCGACTAGTTTAGAAGATC 58.964 47.826 0.00 0.00 0.00 2.75
2665 7225 3.442977 ACGGTGCGACTAGTTTAGAAGAT 59.557 43.478 0.00 0.00 0.00 2.40
2724 7365 1.301244 CATCCATCTTCTCCGGCCG 60.301 63.158 21.04 21.04 0.00 6.13
2727 7368 1.973515 TCATCCATCCATCTTCTCCGG 59.026 52.381 0.00 0.00 0.00 5.14
2728 7369 3.323115 TCTTCATCCATCCATCTTCTCCG 59.677 47.826 0.00 0.00 0.00 4.63
2729 7370 4.504689 GGTCTTCATCCATCCATCTTCTCC 60.505 50.000 0.00 0.00 0.00 3.71
2730 7371 4.102210 TGGTCTTCATCCATCCATCTTCTC 59.898 45.833 0.00 0.00 0.00 2.87
2731 7372 4.042884 TGGTCTTCATCCATCCATCTTCT 58.957 43.478 0.00 0.00 0.00 2.85
2734 7375 3.498121 GCATGGTCTTCATCCATCCATCT 60.498 47.826 0.00 0.00 42.92 2.90
2736 7377 2.812983 CGCATGGTCTTCATCCATCCAT 60.813 50.000 0.00 0.00 42.92 3.41
2737 7378 1.475571 CGCATGGTCTTCATCCATCCA 60.476 52.381 0.00 0.00 42.92 3.41
2738 7379 1.233019 CGCATGGTCTTCATCCATCC 58.767 55.000 0.00 0.00 42.92 3.51
2739 7380 1.233019 CCGCATGGTCTTCATCCATC 58.767 55.000 0.00 0.00 42.92 3.51
2740 7381 0.820891 GCCGCATGGTCTTCATCCAT 60.821 55.000 0.00 0.00 45.29 3.41
2741 7382 1.451927 GCCGCATGGTCTTCATCCA 60.452 57.895 0.00 0.00 39.41 3.41
2742 7383 2.189499 GGCCGCATGGTCTTCATCC 61.189 63.158 0.00 0.00 36.72 3.51
2743 7384 2.537560 CGGCCGCATGGTCTTCATC 61.538 63.158 14.67 0.00 37.90 2.92
2744 7385 2.514592 CGGCCGCATGGTCTTCAT 60.515 61.111 14.67 0.00 37.90 2.57
2745 7386 4.776322 CCGGCCGCATGGTCTTCA 62.776 66.667 22.85 0.00 37.90 3.02
2746 7387 4.467084 TCCGGCCGCATGGTCTTC 62.467 66.667 22.85 0.00 37.90 2.87
2747 7388 4.473520 CTCCGGCCGCATGGTCTT 62.474 66.667 22.85 0.00 37.90 3.01
2749 7390 4.899239 CTCTCCGGCCGCATGGTC 62.899 72.222 22.85 0.00 37.67 4.02
2752 7393 3.933722 ATCCTCTCCGGCCGCATG 61.934 66.667 22.85 11.92 0.00 4.06
2753 7394 3.933722 CATCCTCTCCGGCCGCAT 61.934 66.667 22.85 0.53 0.00 4.73
2756 7397 3.610669 CTCCATCCTCTCCGGCCG 61.611 72.222 21.04 21.04 0.00 6.13
2757 7398 2.444895 ACTCCATCCTCTCCGGCC 60.445 66.667 0.00 0.00 0.00 6.13
2758 7399 1.330655 TTCACTCCATCCTCTCCGGC 61.331 60.000 0.00 0.00 0.00 6.13
2759 7400 0.749649 CTTCACTCCATCCTCTCCGG 59.250 60.000 0.00 0.00 0.00 5.14
2760 7401 0.749649 CCTTCACTCCATCCTCTCCG 59.250 60.000 0.00 0.00 0.00 4.63
2761 7402 0.467804 GCCTTCACTCCATCCTCTCC 59.532 60.000 0.00 0.00 0.00 3.71
2762 7403 0.103937 CGCCTTCACTCCATCCTCTC 59.896 60.000 0.00 0.00 0.00 3.20
2763 7404 0.324738 TCGCCTTCACTCCATCCTCT 60.325 55.000 0.00 0.00 0.00 3.69
2764 7405 0.537188 TTCGCCTTCACTCCATCCTC 59.463 55.000 0.00 0.00 0.00 3.71
2765 7406 0.539051 CTTCGCCTTCACTCCATCCT 59.461 55.000 0.00 0.00 0.00 3.24
2766 7407 1.092345 GCTTCGCCTTCACTCCATCC 61.092 60.000 0.00 0.00 0.00 3.51
2767 7408 1.424493 CGCTTCGCCTTCACTCCATC 61.424 60.000 0.00 0.00 0.00 3.51
2768 7409 1.448540 CGCTTCGCCTTCACTCCAT 60.449 57.895 0.00 0.00 0.00 3.41
2769 7410 1.888436 ATCGCTTCGCCTTCACTCCA 61.888 55.000 0.00 0.00 0.00 3.86
2770 7411 1.153549 ATCGCTTCGCCTTCACTCC 60.154 57.895 0.00 0.00 0.00 3.85
2771 7412 1.424493 CCATCGCTTCGCCTTCACTC 61.424 60.000 0.00 0.00 0.00 3.51
2772 7413 1.448540 CCATCGCTTCGCCTTCACT 60.449 57.895 0.00 0.00 0.00 3.41
2773 7414 1.019278 TTCCATCGCTTCGCCTTCAC 61.019 55.000 0.00 0.00 0.00 3.18
2774 7415 0.740868 CTTCCATCGCTTCGCCTTCA 60.741 55.000 0.00 0.00 0.00 3.02
2775 7416 0.741221 ACTTCCATCGCTTCGCCTTC 60.741 55.000 0.00 0.00 0.00 3.46
2776 7417 1.021390 CACTTCCATCGCTTCGCCTT 61.021 55.000 0.00 0.00 0.00 4.35
2777 7418 1.448540 CACTTCCATCGCTTCGCCT 60.449 57.895 0.00 0.00 0.00 5.52
2778 7419 1.424493 CTCACTTCCATCGCTTCGCC 61.424 60.000 0.00 0.00 0.00 5.54
2779 7420 0.737715 ACTCACTTCCATCGCTTCGC 60.738 55.000 0.00 0.00 0.00 4.70
2780 7421 1.272781 GACTCACTTCCATCGCTTCG 58.727 55.000 0.00 0.00 0.00 3.79
2781 7422 1.272781 CGACTCACTTCCATCGCTTC 58.727 55.000 0.00 0.00 0.00 3.86
2782 7423 0.108615 CCGACTCACTTCCATCGCTT 60.109 55.000 0.00 0.00 33.25 4.68
2783 7424 1.513158 CCGACTCACTTCCATCGCT 59.487 57.895 0.00 0.00 33.25 4.93
2784 7425 1.519455 CCCGACTCACTTCCATCGC 60.519 63.158 0.00 0.00 33.25 4.58
2785 7426 1.141881 CCCCGACTCACTTCCATCG 59.858 63.158 0.00 0.00 0.00 3.84
2914 7561 0.745845 CACTATGACCAGCCACCAGC 60.746 60.000 0.00 0.00 44.25 4.85
2915 7562 0.107508 CCACTATGACCAGCCACCAG 60.108 60.000 0.00 0.00 0.00 4.00
2916 7563 1.990424 CCACTATGACCAGCCACCA 59.010 57.895 0.00 0.00 0.00 4.17
2917 7564 1.452108 GCCACTATGACCAGCCACC 60.452 63.158 0.00 0.00 0.00 4.61
2918 7565 0.107017 ATGCCACTATGACCAGCCAC 60.107 55.000 0.00 0.00 0.00 5.01
2919 7566 0.107066 CATGCCACTATGACCAGCCA 60.107 55.000 0.00 0.00 0.00 4.75
2920 7567 0.107017 ACATGCCACTATGACCAGCC 60.107 55.000 0.00 0.00 0.00 4.85
2921 7568 1.019673 CACATGCCACTATGACCAGC 58.980 55.000 0.00 0.00 0.00 4.85
2922 7569 1.019673 GCACATGCCACTATGACCAG 58.980 55.000 0.00 0.00 34.31 4.00
2923 7570 3.173540 GCACATGCCACTATGACCA 57.826 52.632 0.00 0.00 34.31 4.02
2952 7599 1.303074 ATATCGACCCGGCTAGCGA 60.303 57.895 9.00 1.83 37.17 4.93
2953 7600 1.136984 GATATCGACCCGGCTAGCG 59.863 63.158 9.00 4.07 0.00 4.26
2988 7635 5.007430 AGCAGCTTTACTCATCAATCAATCG 59.993 40.000 0.00 0.00 0.00 3.34
3036 7692 9.043079 CAACTACTACTATGAGTCGATGAAGTA 57.957 37.037 0.00 0.00 0.00 2.24
3048 7704 9.481340 GATGAATCATTGCAACTACTACTATGA 57.519 33.333 0.00 0.00 31.82 2.15
3057 7713 3.544684 AGCCGATGAATCATTGCAACTA 58.455 40.909 17.03 0.00 0.00 2.24
3058 7714 2.357009 GAGCCGATGAATCATTGCAACT 59.643 45.455 17.03 9.13 0.00 3.16
3059 7715 2.097954 TGAGCCGATGAATCATTGCAAC 59.902 45.455 17.03 12.11 0.00 4.17
3060 7716 2.367486 TGAGCCGATGAATCATTGCAA 58.633 42.857 17.03 0.00 0.00 4.08
3084 7740 4.893601 TCGGCGTTGGTTGCGTGA 62.894 61.111 6.85 0.00 0.00 4.35
3085 7741 3.645157 GATCGGCGTTGGTTGCGTG 62.645 63.158 6.85 0.00 0.00 5.34
3086 7742 3.419759 GATCGGCGTTGGTTGCGT 61.420 61.111 6.85 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.