Multiple sequence alignment - TraesCS5B01G054000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G054000 chr5B 100.000 4667 0 0 1 4667 59156135 59160801 0.000000e+00 8619
1 TraesCS5B01G054000 chr5B 95.513 156 4 2 1 156 127836489 127836641 3.610000e-61 246
2 TraesCS5B01G054000 chr5B 95.238 105 4 1 4535 4639 643171729 643171832 1.040000e-36 165
3 TraesCS5B01G054000 chr5A 91.943 4158 211 55 280 4365 44975309 44979414 0.000000e+00 5709
4 TraesCS5B01G054000 chr5A 90.441 136 13 0 4532 4667 44979609 44979744 3.710000e-41 180
5 TraesCS5B01G054000 chr5A 95.192 104 4 1 4536 4639 640604120 640604222 3.740000e-36 163
6 TraesCS5B01G054000 chr5D 91.919 2116 103 23 280 2361 56445668 56447749 0.000000e+00 2898
7 TraesCS5B01G054000 chr5D 91.164 1460 84 27 3027 4451 56448544 56449993 0.000000e+00 1940
8 TraesCS5B01G054000 chr5D 95.516 669 27 3 2362 3028 56447795 56448462 0.000000e+00 1066
9 TraesCS5B01G054000 chr5D 95.513 156 4 2 1 156 58692748 58692596 3.610000e-61 246
10 TraesCS5B01G054000 chr5D 94.872 156 5 2 1 156 6246211 6246059 1.680000e-59 241
11 TraesCS5B01G054000 chr5D 94.872 156 5 2 1 156 503346497 503346649 1.680000e-59 241
12 TraesCS5B01G054000 chr5D 90.909 132 12 0 4534 4665 56450157 56450288 1.330000e-40 178
13 TraesCS5B01G054000 chr5D 94.286 105 5 1 4535 4639 512204282 512204385 4.830000e-35 159
14 TraesCS5B01G054000 chr7B 94.872 156 5 1 1 156 422370785 422370633 1.680000e-59 241
15 TraesCS5B01G054000 chr7B 94.872 156 5 2 1 156 716766819 716766667 1.680000e-59 241
16 TraesCS5B01G054000 chr6B 94.872 156 5 2 1 156 394537765 394537917 1.680000e-59 241
17 TraesCS5B01G054000 chr1B 94.872 156 5 2 1 156 338941786 338941634 1.680000e-59 241
18 TraesCS5B01G054000 chr1A 94.872 156 5 2 1 156 554489092 554489244 1.680000e-59 241
19 TraesCS5B01G054000 chr1A 97.938 97 0 2 4536 4631 554275616 554275521 2.890000e-37 167
20 TraesCS5B01G054000 chr6A 95.192 104 4 1 4539 4641 60430380 60430483 3.740000e-36 163
21 TraesCS5B01G054000 chr1D 95.238 105 2 3 4534 4637 462471280 462471382 3.740000e-36 163
22 TraesCS5B01G054000 chr2D 94.231 104 5 1 4541 4644 37930170 37930272 1.740000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G054000 chr5B 59156135 59160801 4666 False 8619.0 8619 100.000 1 4667 1 chr5B.!!$F1 4666
1 TraesCS5B01G054000 chr5A 44975309 44979744 4435 False 2944.5 5709 91.192 280 4667 2 chr5A.!!$F2 4387
2 TraesCS5B01G054000 chr5D 56445668 56450288 4620 False 1520.5 2898 92.377 280 4665 4 chr5D.!!$F3 4385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.038166 TTGACATGTTCCCCCTCAGC 59.962 55.0 0.0 0.0 0.00 4.26 F
376 377 0.105709 GAGAGAAGAGGGGGAGAGGG 60.106 65.0 0.0 0.0 0.00 4.30 F
969 1000 0.600255 AAAACTCTCTGACGCCACGG 60.600 55.0 0.0 0.0 0.00 4.94 F
1446 1481 0.948623 TCGCACTGTTTGGTGGATCG 60.949 55.0 0.0 0.0 37.65 3.69 F
2864 2952 0.782384 GTCTCTGTTACCGTTGTGCG 59.218 55.0 0.0 0.0 40.95 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1940 0.953727 TCACACATGGCAAAGCAGAC 59.046 50.0 0.0 0.0 0.00 3.51 R
2124 2163 2.805657 GCACTACCGACAAACCAAGAGT 60.806 50.0 0.0 0.0 0.00 3.24 R
2425 2510 0.761802 CTCTCCTGGGTTCTATGCCC 59.238 60.0 0.0 0.0 46.26 5.36 R
3418 3604 1.172812 GCTGACCAACACAGGGGAAC 61.173 60.0 0.0 0.0 36.09 3.62 R
4242 4455 0.258774 AACACCACAGCCTGTCCTTT 59.741 50.0 0.0 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.934023 ACATCCAGAATAAACCTAAGAAAACA 57.066 30.769 0.00 0.00 0.00 2.83
28 29 9.533831 ACATCCAGAATAAACCTAAGAAAACAT 57.466 29.630 0.00 0.00 0.00 2.71
29 30 9.793252 CATCCAGAATAAACCTAAGAAAACATG 57.207 33.333 0.00 0.00 0.00 3.21
30 31 9.753674 ATCCAGAATAAACCTAAGAAAACATGA 57.246 29.630 0.00 0.00 0.00 3.07
31 32 9.753674 TCCAGAATAAACCTAAGAAAACATGAT 57.246 29.630 0.00 0.00 0.00 2.45
34 35 9.981460 AGAATAAACCTAAGAAAACATGATCCT 57.019 29.630 0.00 0.00 0.00 3.24
37 38 9.853177 ATAAACCTAAGAAAACATGATCCTAGG 57.147 33.333 0.82 0.82 36.32 3.02
38 39 5.685728 ACCTAAGAAAACATGATCCTAGGC 58.314 41.667 2.96 0.00 34.44 3.93
39 40 5.191722 ACCTAAGAAAACATGATCCTAGGCA 59.808 40.000 2.96 0.00 34.44 4.75
40 41 5.762218 CCTAAGAAAACATGATCCTAGGCAG 59.238 44.000 2.96 0.00 0.00 4.85
41 42 5.441718 AAGAAAACATGATCCTAGGCAGA 57.558 39.130 2.96 0.00 0.00 4.26
42 43 4.775236 AGAAAACATGATCCTAGGCAGAC 58.225 43.478 2.96 0.00 0.00 3.51
43 44 4.225942 AGAAAACATGATCCTAGGCAGACA 59.774 41.667 2.96 1.75 0.00 3.41
44 45 3.550437 AACATGATCCTAGGCAGACAC 57.450 47.619 2.96 0.00 0.00 3.67
45 46 2.756907 ACATGATCCTAGGCAGACACT 58.243 47.619 2.96 0.00 0.00 3.55
46 47 3.110705 ACATGATCCTAGGCAGACACTT 58.889 45.455 2.96 0.00 0.00 3.16
47 48 3.118482 ACATGATCCTAGGCAGACACTTG 60.118 47.826 2.96 3.18 0.00 3.16
48 49 2.820178 TGATCCTAGGCAGACACTTGA 58.180 47.619 2.96 0.00 0.00 3.02
49 50 2.497675 TGATCCTAGGCAGACACTTGAC 59.502 50.000 2.96 0.00 0.00 3.18
50 51 2.009681 TCCTAGGCAGACACTTGACA 57.990 50.000 2.96 0.00 0.00 3.58
51 52 2.540383 TCCTAGGCAGACACTTGACAT 58.460 47.619 2.96 0.00 0.00 3.06
52 53 2.234661 TCCTAGGCAGACACTTGACATG 59.765 50.000 2.96 0.00 0.00 3.21
53 54 2.027745 CCTAGGCAGACACTTGACATGT 60.028 50.000 0.00 0.00 0.00 3.21
54 55 2.645838 AGGCAGACACTTGACATGTT 57.354 45.000 0.00 0.00 0.00 2.71
55 56 2.498167 AGGCAGACACTTGACATGTTC 58.502 47.619 0.00 0.00 0.00 3.18
56 57 1.537202 GGCAGACACTTGACATGTTCC 59.463 52.381 0.00 0.00 0.00 3.62
57 58 1.537202 GCAGACACTTGACATGTTCCC 59.463 52.381 0.00 0.00 0.00 3.97
58 59 2.154462 CAGACACTTGACATGTTCCCC 58.846 52.381 0.00 0.00 0.00 4.81
59 60 1.073923 AGACACTTGACATGTTCCCCC 59.926 52.381 0.00 0.00 0.00 5.40
60 61 1.073923 GACACTTGACATGTTCCCCCT 59.926 52.381 0.00 0.00 0.00 4.79
61 62 1.073923 ACACTTGACATGTTCCCCCTC 59.926 52.381 0.00 0.00 0.00 4.30
62 63 1.073763 CACTTGACATGTTCCCCCTCA 59.926 52.381 0.00 0.00 0.00 3.86
63 64 1.352352 ACTTGACATGTTCCCCCTCAG 59.648 52.381 0.00 0.00 0.00 3.35
64 65 0.038166 TTGACATGTTCCCCCTCAGC 59.962 55.000 0.00 0.00 0.00 4.26
65 66 1.077429 GACATGTTCCCCCTCAGCC 60.077 63.158 0.00 0.00 0.00 4.85
66 67 1.542375 ACATGTTCCCCCTCAGCCT 60.542 57.895 0.00 0.00 0.00 4.58
67 68 1.225704 CATGTTCCCCCTCAGCCTC 59.774 63.158 0.00 0.00 0.00 4.70
68 69 2.003548 ATGTTCCCCCTCAGCCTCC 61.004 63.158 0.00 0.00 0.00 4.30
69 70 2.610859 GTTCCCCCTCAGCCTCCA 60.611 66.667 0.00 0.00 0.00 3.86
70 71 2.285668 TTCCCCCTCAGCCTCCAG 60.286 66.667 0.00 0.00 0.00 3.86
71 72 3.950861 TTCCCCCTCAGCCTCCAGG 62.951 68.421 0.00 0.00 38.53 4.45
81 82 4.113815 CCTCCAGGCCCATCGCAA 62.114 66.667 0.00 0.00 40.31 4.85
82 83 2.515523 CTCCAGGCCCATCGCAAG 60.516 66.667 0.00 0.00 40.31 4.01
83 84 4.113815 TCCAGGCCCATCGCAAGG 62.114 66.667 0.00 0.00 40.31 3.61
84 85 4.113815 CCAGGCCCATCGCAAGGA 62.114 66.667 0.00 0.00 40.31 3.36
85 86 2.045045 CAGGCCCATCGCAAGGAA 60.045 61.111 0.00 0.00 40.31 3.36
86 87 1.678635 CAGGCCCATCGCAAGGAAA 60.679 57.895 0.00 0.00 40.31 3.13
87 88 1.379044 AGGCCCATCGCAAGGAAAG 60.379 57.895 0.00 0.00 40.31 2.62
88 89 2.491621 GCCCATCGCAAGGAAAGC 59.508 61.111 0.00 0.00 37.47 3.51
98 99 3.203161 GCAAGGAAAGCGAAAACCTAG 57.797 47.619 0.00 0.00 32.06 3.02
99 100 2.812011 GCAAGGAAAGCGAAAACCTAGA 59.188 45.455 0.00 0.00 32.06 2.43
100 101 3.440522 GCAAGGAAAGCGAAAACCTAGAT 59.559 43.478 0.00 0.00 32.06 1.98
101 102 4.082733 GCAAGGAAAGCGAAAACCTAGATT 60.083 41.667 0.00 0.00 32.06 2.40
102 103 5.564848 GCAAGGAAAGCGAAAACCTAGATTT 60.565 40.000 0.00 0.00 32.06 2.17
103 104 5.629079 AGGAAAGCGAAAACCTAGATTTG 57.371 39.130 0.00 0.00 0.00 2.32
104 105 4.082733 AGGAAAGCGAAAACCTAGATTTGC 60.083 41.667 0.00 0.00 33.04 3.68
105 106 4.082733 GGAAAGCGAAAACCTAGATTTGCT 60.083 41.667 10.22 10.22 30.86 3.91
106 107 5.453567 AAAGCGAAAACCTAGATTTGCTT 57.546 34.783 17.60 17.60 36.56 3.91
107 108 5.453567 AAGCGAAAACCTAGATTTGCTTT 57.546 34.783 17.60 8.18 34.00 3.51
108 109 6.569179 AAGCGAAAACCTAGATTTGCTTTA 57.431 33.333 17.60 0.00 34.00 1.85
109 110 6.759497 AGCGAAAACCTAGATTTGCTTTAT 57.241 33.333 10.22 0.00 0.00 1.40
110 111 6.786207 AGCGAAAACCTAGATTTGCTTTATC 58.214 36.000 10.22 0.00 0.00 1.75
111 112 5.677178 GCGAAAACCTAGATTTGCTTTATCG 59.323 40.000 0.00 0.00 0.00 2.92
112 113 6.192360 CGAAAACCTAGATTTGCTTTATCGG 58.808 40.000 0.00 0.00 0.00 4.18
113 114 6.036735 CGAAAACCTAGATTTGCTTTATCGGA 59.963 38.462 0.00 0.00 0.00 4.55
114 115 7.254795 CGAAAACCTAGATTTGCTTTATCGGAT 60.255 37.037 0.00 0.00 0.00 4.18
115 116 8.974060 AAAACCTAGATTTGCTTTATCGGATA 57.026 30.769 0.00 0.00 0.00 2.59
116 117 9.574516 AAAACCTAGATTTGCTTTATCGGATAT 57.425 29.630 0.00 0.00 0.00 1.63
117 118 8.779354 AACCTAGATTTGCTTTATCGGATATC 57.221 34.615 0.00 0.00 0.00 1.63
118 119 7.907389 ACCTAGATTTGCTTTATCGGATATCA 58.093 34.615 4.83 0.00 0.00 2.15
119 120 8.375506 ACCTAGATTTGCTTTATCGGATATCAA 58.624 33.333 4.83 1.98 0.00 2.57
120 121 9.219603 CCTAGATTTGCTTTATCGGATATCAAA 57.780 33.333 16.01 16.01 0.00 2.69
122 123 7.576236 AGATTTGCTTTATCGGATATCAAACG 58.424 34.615 16.01 0.00 0.00 3.60
123 124 5.666969 TTGCTTTATCGGATATCAAACGG 57.333 39.130 4.83 0.00 0.00 4.44
124 125 4.062293 TGCTTTATCGGATATCAAACGGG 58.938 43.478 4.83 0.00 0.00 5.28
125 126 4.202274 TGCTTTATCGGATATCAAACGGGA 60.202 41.667 4.83 0.00 0.00 5.14
126 127 4.753107 GCTTTATCGGATATCAAACGGGAA 59.247 41.667 4.83 0.00 0.00 3.97
127 128 5.333875 GCTTTATCGGATATCAAACGGGAAC 60.334 44.000 4.83 0.00 0.00 3.62
128 129 5.540400 TTATCGGATATCAAACGGGAACT 57.460 39.130 4.83 0.00 0.00 3.01
129 130 3.447918 TCGGATATCAAACGGGAACTC 57.552 47.619 4.83 0.00 0.00 3.01
130 131 2.101917 TCGGATATCAAACGGGAACTCC 59.898 50.000 4.83 0.00 0.00 3.85
143 144 4.092771 GGGAACTCCGAGCAAATAAAAC 57.907 45.455 0.00 0.00 36.71 2.43
144 145 3.504520 GGGAACTCCGAGCAAATAAAACA 59.495 43.478 0.00 0.00 36.71 2.83
145 146 4.473199 GGAACTCCGAGCAAATAAAACAC 58.527 43.478 0.00 0.00 0.00 3.32
146 147 4.473199 GAACTCCGAGCAAATAAAACACC 58.527 43.478 0.00 0.00 0.00 4.16
147 148 3.751518 ACTCCGAGCAAATAAAACACCT 58.248 40.909 0.00 0.00 0.00 4.00
148 149 4.142038 ACTCCGAGCAAATAAAACACCTT 58.858 39.130 0.00 0.00 0.00 3.50
149 150 4.583073 ACTCCGAGCAAATAAAACACCTTT 59.417 37.500 0.00 0.00 0.00 3.11
150 151 5.116069 TCCGAGCAAATAAAACACCTTTC 57.884 39.130 0.00 0.00 0.00 2.62
151 152 4.580995 TCCGAGCAAATAAAACACCTTTCA 59.419 37.500 0.00 0.00 0.00 2.69
152 153 5.067936 TCCGAGCAAATAAAACACCTTTCAA 59.932 36.000 0.00 0.00 0.00 2.69
153 154 5.751028 CCGAGCAAATAAAACACCTTTCAAA 59.249 36.000 0.00 0.00 0.00 2.69
154 155 6.256757 CCGAGCAAATAAAACACCTTTCAAAA 59.743 34.615 0.00 0.00 0.00 2.44
155 156 7.336975 CGAGCAAATAAAACACCTTTCAAAAG 58.663 34.615 0.00 0.00 35.79 2.27
156 157 7.015226 AGCAAATAAAACACCTTTCAAAAGC 57.985 32.000 0.00 0.00 34.69 3.51
157 158 6.597280 AGCAAATAAAACACCTTTCAAAAGCA 59.403 30.769 0.00 0.00 34.69 3.91
158 159 6.906678 GCAAATAAAACACCTTTCAAAAGCAG 59.093 34.615 0.00 0.00 34.69 4.24
159 160 7.413988 GCAAATAAAACACCTTTCAAAAGCAGT 60.414 33.333 0.00 0.00 34.69 4.40
160 161 7.538303 AATAAAACACCTTTCAAAAGCAGTG 57.462 32.000 9.12 9.12 35.59 3.66
161 162 3.525268 AACACCTTTCAAAAGCAGTGG 57.475 42.857 13.09 0.00 34.52 4.00
162 163 1.136891 ACACCTTTCAAAAGCAGTGGC 59.863 47.619 13.09 0.00 34.52 5.01
172 173 2.825836 GCAGTGGCTTGGATCGGG 60.826 66.667 0.00 0.00 36.96 5.14
173 174 2.671070 CAGTGGCTTGGATCGGGT 59.329 61.111 0.00 0.00 0.00 5.28
174 175 1.450312 CAGTGGCTTGGATCGGGTC 60.450 63.158 0.00 0.00 0.00 4.46
182 183 2.806237 GGATCGGGTCCAGACGAC 59.194 66.667 1.41 0.00 46.96 4.34
183 184 2.408022 GATCGGGTCCAGACGACG 59.592 66.667 0.00 0.00 42.99 5.12
187 188 3.771160 GGGTCCAGACGACGCCAT 61.771 66.667 0.00 0.00 46.18 4.40
188 189 2.264794 GGTCCAGACGACGCCATT 59.735 61.111 0.00 0.00 42.99 3.16
189 190 2.100631 GGTCCAGACGACGCCATTG 61.101 63.158 0.00 0.00 42.99 2.82
190 191 1.080093 GTCCAGACGACGCCATTGA 60.080 57.895 0.00 0.00 0.00 2.57
191 192 0.460284 GTCCAGACGACGCCATTGAT 60.460 55.000 0.00 0.00 0.00 2.57
192 193 1.107945 TCCAGACGACGCCATTGATA 58.892 50.000 0.00 0.00 0.00 2.15
193 194 1.686587 TCCAGACGACGCCATTGATAT 59.313 47.619 0.00 0.00 0.00 1.63
194 195 2.102420 TCCAGACGACGCCATTGATATT 59.898 45.455 0.00 0.00 0.00 1.28
195 196 2.221749 CCAGACGACGCCATTGATATTG 59.778 50.000 0.00 0.00 0.00 1.90
196 197 2.866156 CAGACGACGCCATTGATATTGT 59.134 45.455 0.00 0.00 0.00 2.71
197 198 3.309682 CAGACGACGCCATTGATATTGTT 59.690 43.478 0.00 0.00 0.00 2.83
198 199 3.555956 AGACGACGCCATTGATATTGTTC 59.444 43.478 0.00 0.00 0.00 3.18
199 200 2.284150 ACGACGCCATTGATATTGTTCG 59.716 45.455 0.00 0.00 0.00 3.95
200 201 2.284150 CGACGCCATTGATATTGTTCGT 59.716 45.455 0.00 0.00 0.00 3.85
201 202 3.601586 CGACGCCATTGATATTGTTCGTC 60.602 47.826 0.00 0.00 40.84 4.20
202 203 3.531538 ACGCCATTGATATTGTTCGTCT 58.468 40.909 0.00 0.00 0.00 4.18
203 204 3.938963 ACGCCATTGATATTGTTCGTCTT 59.061 39.130 0.00 0.00 0.00 3.01
204 205 4.201812 ACGCCATTGATATTGTTCGTCTTG 60.202 41.667 0.00 0.00 0.00 3.02
205 206 4.033932 CGCCATTGATATTGTTCGTCTTGA 59.966 41.667 0.00 0.00 0.00 3.02
206 207 5.277490 CGCCATTGATATTGTTCGTCTTGAT 60.277 40.000 0.00 0.00 0.00 2.57
207 208 6.138761 GCCATTGATATTGTTCGTCTTGATC 58.861 40.000 0.00 0.00 0.00 2.92
208 209 6.357980 CCATTGATATTGTTCGTCTTGATCG 58.642 40.000 0.00 0.00 0.00 3.69
209 210 6.018751 CCATTGATATTGTTCGTCTTGATCGT 60.019 38.462 0.00 0.00 0.00 3.73
210 211 7.169140 CCATTGATATTGTTCGTCTTGATCGTA 59.831 37.037 0.00 0.00 0.00 3.43
211 212 7.679659 TTGATATTGTTCGTCTTGATCGTAG 57.320 36.000 0.00 0.00 0.00 3.51
212 213 5.685954 TGATATTGTTCGTCTTGATCGTAGC 59.314 40.000 0.00 0.00 0.00 3.58
213 214 3.291809 TTGTTCGTCTTGATCGTAGCA 57.708 42.857 0.00 0.00 0.00 3.49
214 215 2.592194 TGTTCGTCTTGATCGTAGCAC 58.408 47.619 0.00 0.00 0.00 4.40
215 216 2.228103 TGTTCGTCTTGATCGTAGCACT 59.772 45.455 0.00 0.00 0.00 4.40
216 217 3.243336 GTTCGTCTTGATCGTAGCACTT 58.757 45.455 0.00 0.00 0.00 3.16
217 218 2.863739 TCGTCTTGATCGTAGCACTTG 58.136 47.619 0.00 0.00 0.00 3.16
218 219 2.486592 TCGTCTTGATCGTAGCACTTGA 59.513 45.455 0.00 0.00 0.00 3.02
219 220 3.128764 TCGTCTTGATCGTAGCACTTGAT 59.871 43.478 0.00 0.00 0.00 2.57
220 221 3.859961 CGTCTTGATCGTAGCACTTGATT 59.140 43.478 0.00 0.00 0.00 2.57
221 222 4.327357 CGTCTTGATCGTAGCACTTGATTT 59.673 41.667 0.00 0.00 0.00 2.17
222 223 5.163953 CGTCTTGATCGTAGCACTTGATTTT 60.164 40.000 0.00 0.00 0.00 1.82
223 224 6.017933 GTCTTGATCGTAGCACTTGATTTTG 58.982 40.000 0.00 0.00 0.00 2.44
224 225 5.931724 TCTTGATCGTAGCACTTGATTTTGA 59.068 36.000 0.00 0.00 0.00 2.69
225 226 5.784750 TGATCGTAGCACTTGATTTTGAG 57.215 39.130 0.00 0.00 0.00 3.02
226 227 5.237815 TGATCGTAGCACTTGATTTTGAGT 58.762 37.500 0.00 0.00 0.00 3.41
227 228 6.394809 TGATCGTAGCACTTGATTTTGAGTA 58.605 36.000 0.00 0.00 0.00 2.59
228 229 6.871492 TGATCGTAGCACTTGATTTTGAGTAA 59.129 34.615 0.00 0.00 0.00 2.24
229 230 7.549134 TGATCGTAGCACTTGATTTTGAGTAAT 59.451 33.333 0.00 0.00 0.00 1.89
230 231 8.942338 ATCGTAGCACTTGATTTTGAGTAATA 57.058 30.769 0.00 0.00 0.00 0.98
231 232 8.181487 TCGTAGCACTTGATTTTGAGTAATAC 57.819 34.615 0.00 0.00 0.00 1.89
232 233 7.815549 TCGTAGCACTTGATTTTGAGTAATACA 59.184 33.333 0.00 0.00 0.00 2.29
233 234 8.440059 CGTAGCACTTGATTTTGAGTAATACAA 58.560 33.333 0.00 0.00 0.00 2.41
234 235 9.760660 GTAGCACTTGATTTTGAGTAATACAAG 57.239 33.333 0.00 0.00 39.02 3.16
235 236 7.820648 AGCACTTGATTTTGAGTAATACAAGG 58.179 34.615 0.00 0.00 37.93 3.61
236 237 7.665559 AGCACTTGATTTTGAGTAATACAAGGA 59.334 33.333 0.00 0.00 37.93 3.36
237 238 8.462016 GCACTTGATTTTGAGTAATACAAGGAT 58.538 33.333 0.00 0.00 37.93 3.24
252 253 5.852282 ACAAGGATTATTTGGAATTCCCG 57.148 39.130 21.90 0.00 37.93 5.14
253 254 4.099419 ACAAGGATTATTTGGAATTCCCGC 59.901 41.667 21.90 3.33 37.93 6.13
254 255 3.909732 AGGATTATTTGGAATTCCCGCA 58.090 40.909 21.90 5.94 37.93 5.69
255 256 4.285863 AGGATTATTTGGAATTCCCGCAA 58.714 39.130 21.90 12.04 37.93 4.85
256 257 4.714308 AGGATTATTTGGAATTCCCGCAAA 59.286 37.500 21.90 15.34 37.93 3.68
257 258 5.188751 AGGATTATTTGGAATTCCCGCAAAA 59.811 36.000 21.90 14.99 37.93 2.44
258 259 5.877564 GGATTATTTGGAATTCCCGCAAAAA 59.122 36.000 21.90 14.64 37.93 1.94
287 288 9.778741 AGAATTATTTGGAAAAGGAAAGGAAAC 57.221 29.630 0.00 0.00 0.00 2.78
293 294 6.963083 TGGAAAAGGAAAGGAAACGAATTA 57.037 33.333 0.00 0.00 0.00 1.40
295 296 8.638629 TGGAAAAGGAAAGGAAACGAATTATA 57.361 30.769 0.00 0.00 0.00 0.98
367 368 5.105351 GGAAAGGAGAAGAAGAGAGAAGAGG 60.105 48.000 0.00 0.00 0.00 3.69
369 370 3.031013 GGAGAAGAAGAGAGAAGAGGGG 58.969 54.545 0.00 0.00 0.00 4.79
372 373 2.846665 AGAAGAGAGAAGAGGGGGAG 57.153 55.000 0.00 0.00 0.00 4.30
373 374 2.293246 AGAAGAGAGAAGAGGGGGAGA 58.707 52.381 0.00 0.00 0.00 3.71
374 375 2.244769 AGAAGAGAGAAGAGGGGGAGAG 59.755 54.545 0.00 0.00 0.00 3.20
375 376 0.933700 AGAGAGAAGAGGGGGAGAGG 59.066 60.000 0.00 0.00 0.00 3.69
376 377 0.105709 GAGAGAAGAGGGGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
377 378 1.074850 GAGAAGAGGGGGAGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
378 379 2.040359 GAAGAGGGGGAGAGGGGG 60.040 72.222 0.00 0.00 0.00 5.40
459 464 1.688197 CCGCCTGCCAAATAAATCCAT 59.312 47.619 0.00 0.00 0.00 3.41
460 465 2.288395 CCGCCTGCCAAATAAATCCATC 60.288 50.000 0.00 0.00 0.00 3.51
641 659 2.496817 GATTCCTCGCTGCTCGGT 59.503 61.111 0.00 0.00 39.05 4.69
695 715 1.078426 CTTGCTCCCCCGTCGATTT 60.078 57.895 0.00 0.00 0.00 2.17
708 728 2.822255 GATTTGGTGGCGCGGCTA 60.822 61.111 33.23 17.05 0.00 3.93
756 780 2.027192 CCTGGAGAAATCGACCTGGAAA 60.027 50.000 0.00 0.00 42.69 3.13
907 938 3.952811 GCGTTGGGCGATAGGATC 58.047 61.111 0.00 0.00 44.77 3.36
933 964 2.281345 GCAGCGGGCAGAGCATAT 60.281 61.111 0.00 0.00 43.97 1.78
949 980 4.326826 AGCATATTCGGATTGGTGTATGG 58.673 43.478 0.00 0.00 0.00 2.74
956 987 4.258543 TCGGATTGGTGTATGGAAAACTC 58.741 43.478 0.00 0.00 0.00 3.01
960 991 5.355350 GGATTGGTGTATGGAAAACTCTCTG 59.645 44.000 0.00 0.00 0.00 3.35
961 992 5.560722 TTGGTGTATGGAAAACTCTCTGA 57.439 39.130 0.00 0.00 0.00 3.27
962 993 4.894784 TGGTGTATGGAAAACTCTCTGAC 58.105 43.478 0.00 0.00 0.00 3.51
969 1000 0.600255 AAAACTCTCTGACGCCACGG 60.600 55.000 0.00 0.00 0.00 4.94
971 1002 3.753434 CTCTCTGACGCCACGGCT 61.753 66.667 6.48 0.00 35.04 5.52
976 1007 3.865929 CTGACGCCACGGCTTGACT 62.866 63.158 6.48 0.00 35.04 3.41
988 1020 1.371183 CTTGACTGGCTTGGTCGGA 59.629 57.895 0.00 0.00 36.58 4.55
1047 1079 2.359531 GTGCAGGAGCGTTCTACTCTAT 59.640 50.000 0.00 0.00 46.23 1.98
1192 1227 4.997905 AACAAGATCGTGTCATGTTCAG 57.002 40.909 14.82 1.55 43.20 3.02
1223 1258 9.440773 GTTGATAATGTTCTGGATCATATGCTA 57.559 33.333 0.00 0.00 0.00 3.49
1225 1260 9.609346 TGATAATGTTCTGGATCATATGCTATG 57.391 33.333 0.00 0.00 0.00 2.23
1226 1261 6.754702 AATGTTCTGGATCATATGCTATGC 57.245 37.500 0.00 0.00 0.00 3.14
1227 1262 4.582869 TGTTCTGGATCATATGCTATGCC 58.417 43.478 0.00 0.00 0.00 4.40
1228 1263 4.287845 TGTTCTGGATCATATGCTATGCCT 59.712 41.667 0.00 0.00 0.00 4.75
1235 1270 8.725606 TGGATCATATGCTATGCCTATATGTA 57.274 34.615 0.00 0.00 36.59 2.29
1284 1319 3.498661 GGAAATGAAGGAGGGACACACTT 60.499 47.826 0.00 0.00 0.00 3.16
1288 1323 1.002544 GAAGGAGGGACACACTTGGAG 59.997 57.143 0.00 0.00 0.00 3.86
1420 1455 3.241322 GCTTAACATGCGCATTCATCAAC 59.759 43.478 22.81 4.12 0.00 3.18
1421 1456 4.665212 CTTAACATGCGCATTCATCAACT 58.335 39.130 22.81 0.00 0.00 3.16
1446 1481 0.948623 TCGCACTGTTTGGTGGATCG 60.949 55.000 0.00 0.00 37.65 3.69
1447 1482 0.948623 CGCACTGTTTGGTGGATCGA 60.949 55.000 0.00 0.00 37.65 3.59
1448 1483 1.453155 GCACTGTTTGGTGGATCGAT 58.547 50.000 0.00 0.00 37.65 3.59
1449 1484 1.398390 GCACTGTTTGGTGGATCGATC 59.602 52.381 17.36 17.36 37.65 3.69
1469 1504 1.086696 AATGCTGTATCGTGTGGTGC 58.913 50.000 0.00 0.00 0.00 5.01
1473 1508 1.403647 GCTGTATCGTGTGGTGCACTA 60.404 52.381 17.98 8.10 45.57 2.74
1547 1582 6.070194 TGAGGTTGCTACTAAGAGCCTATTTT 60.070 38.462 0.00 0.00 42.11 1.82
1563 1598 8.011844 AGCCTATTTTGATTGTAGATTTTCCC 57.988 34.615 0.00 0.00 0.00 3.97
1580 1615 2.636005 TCCCATAGGAATCATGGAGGG 58.364 52.381 2.91 0.00 44.95 4.30
1612 1647 5.508994 CCGTGGGGATTTTTCCTATAATTGC 60.509 44.000 0.00 0.00 34.06 3.56
1635 1670 3.435601 CCTTTAGATCATTGGACTGGGGG 60.436 52.174 0.00 0.00 0.00 5.40
1697 1732 7.675619 ACATGAACTTTCCCTTCCTTATTTGAT 59.324 33.333 0.00 0.00 0.00 2.57
1765 1804 5.701224 TCCCTTACAAATTTGTCTTCTGGT 58.299 37.500 26.46 3.09 42.35 4.00
1785 1824 8.837099 TCTGGTTTAATCCATATTGGTTCATT 57.163 30.769 5.72 0.00 39.03 2.57
1829 1868 4.681074 AGAACCCTTCTAATCTAGCTGC 57.319 45.455 0.00 0.00 38.49 5.25
1901 1940 4.661222 TGCCATGTATATTGGGTGTATGG 58.339 43.478 0.00 0.00 37.30 2.74
2079 2118 3.328505 CATTTGAAATTGGACAGTGGGC 58.671 45.455 0.00 0.00 0.00 5.36
2080 2119 2.380064 TTGAAATTGGACAGTGGGCT 57.620 45.000 0.00 0.00 0.00 5.19
2124 2163 4.001618 TGTAGCTGCATACTGTTGTTCA 57.998 40.909 0.00 0.00 0.00 3.18
2137 2176 4.156008 ACTGTTGTTCACTCTTGGTTTGTC 59.844 41.667 0.00 0.00 0.00 3.18
2150 2189 1.798813 GGTTTGTCGGTAGTGCTTCAG 59.201 52.381 0.00 0.00 0.00 3.02
2176 2216 9.823098 GATATCTAGTTGCATGCTTATGAAAAG 57.177 33.333 20.33 5.74 0.00 2.27
2205 2245 6.721208 AGTAAATTTCTTCTGCAGGAATGGAA 59.279 34.615 15.13 2.12 30.04 3.53
2376 2461 6.317789 TCCTTGAGCTTGTAAGTTGAAATG 57.682 37.500 0.00 0.00 0.00 2.32
2385 2470 8.947115 AGCTTGTAAGTTGAAATGGTAGTTATC 58.053 33.333 0.00 0.00 0.00 1.75
2402 2487 9.778741 GGTAGTTATCAATGGAATATCTGTTCA 57.221 33.333 0.00 0.00 0.00 3.18
2425 2510 8.263940 TCAATAAATTCAGAAAGGGTTACTCG 57.736 34.615 0.00 0.00 0.00 4.18
2511 2598 3.577919 ACCCCAGGTGTAGCTAGATTAG 58.422 50.000 0.00 0.00 32.98 1.73
2534 2621 5.578727 AGCAGAAACTTCGTATAGCTTGAAG 59.421 40.000 13.08 13.08 43.63 3.02
2551 2638 6.372937 AGCTTGAAGTTACCTGATTTTCTAGC 59.627 38.462 9.74 9.74 42.67 3.42
2772 2860 1.277842 TCTCTGCGGGCAAGTTGATTA 59.722 47.619 7.16 0.00 0.00 1.75
2798 2886 3.266510 TCACCTTATGTCATGTGCTCC 57.733 47.619 0.00 0.00 0.00 4.70
2864 2952 0.782384 GTCTCTGTTACCGTTGTGCG 59.218 55.000 0.00 0.00 40.95 5.34
3131 3309 6.016610 GCCAAACGGTGTTAATGTATCCATAT 60.017 38.462 0.00 0.00 0.00 1.78
3225 3404 2.363038 TCTCTTTGTGCTGCAAATGCTT 59.637 40.909 2.77 0.00 45.00 3.91
3322 3502 2.610232 GCATGCACCAAACGGAATTTCT 60.610 45.455 14.21 0.00 0.00 2.52
3359 3539 3.393800 ACTTCTGCGGTATGTGCATATC 58.606 45.455 0.00 0.00 42.32 1.63
3367 3547 3.678289 GGTATGTGCATATCATGAGCCA 58.322 45.455 0.00 0.79 0.00 4.75
3389 3569 4.582701 TTTGAGCATTCACCGTGAATTT 57.417 36.364 21.72 14.04 44.03 1.82
3390 3570 5.697473 TTTGAGCATTCACCGTGAATTTA 57.303 34.783 21.72 5.37 44.03 1.40
3418 3604 6.183360 GGTGATTTACCTTTCTAATTTCCCCG 60.183 42.308 0.00 0.00 46.51 5.73
3428 3614 0.251608 AATTTCCCCGTTCCCCTGTG 60.252 55.000 0.00 0.00 0.00 3.66
3502 3688 4.194640 CAATGACAGTAGATGACAAGGGG 58.805 47.826 0.00 0.00 37.14 4.79
3524 3710 2.196997 ATTGGTAAGCCGCCTCTGCA 62.197 55.000 0.00 0.00 37.32 4.41
3535 3721 1.639298 GCCTCTGCACTTTGCTACCG 61.639 60.000 0.00 0.00 45.31 4.02
3538 3724 1.672356 CTGCACTTTGCTACCGCCT 60.672 57.895 0.00 0.00 45.31 5.52
3556 3742 3.714391 GCCTTCCAATCAATCTGCATTC 58.286 45.455 0.00 0.00 0.00 2.67
3617 3803 1.678627 CACCACCCGTTGACATTTTCA 59.321 47.619 0.00 0.00 0.00 2.69
3618 3804 2.099921 CACCACCCGTTGACATTTTCAA 59.900 45.455 0.00 0.00 42.26 2.69
3648 3834 0.605319 ACGTCGTAGTCGGGGTTACA 60.605 55.000 0.00 0.00 44.44 2.41
3703 3889 4.028490 TACCAAGTGCGGCCCTGG 62.028 66.667 0.00 9.72 0.00 4.45
3790 3976 2.377880 GGTTGCGTACAAGAAAAACCG 58.622 47.619 0.00 0.00 36.16 4.44
3850 4044 2.224426 TGCGGGTGTGGATAATATGGAC 60.224 50.000 0.00 0.00 0.00 4.02
3964 4159 1.051812 CTGTGTCCTGTCCTGAAGGT 58.948 55.000 0.00 0.00 36.14 3.50
3975 4170 0.671781 CCTGAAGGTGCCTCTCGTTG 60.672 60.000 0.00 0.00 0.00 4.10
4177 4390 1.874129 TACCTGACATGGTACTGGGG 58.126 55.000 0.00 0.00 41.22 4.96
4179 4392 1.153369 CTGACATGGTACTGGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
4181 4394 1.195442 TGACATGGTACTGGGGCGAA 61.195 55.000 0.00 0.00 0.00 4.70
4182 4395 0.462047 GACATGGTACTGGGGCGAAG 60.462 60.000 0.00 0.00 0.00 3.79
4185 4398 2.686106 GGTACTGGGGCGAAGGGA 60.686 66.667 0.00 0.00 0.00 4.20
4215 4428 7.876936 AGAGATAAAGTGCAATCATTCATGT 57.123 32.000 0.00 0.00 0.00 3.21
4234 4447 2.622942 TGTTCAAGTCCATGTTTGCTCC 59.377 45.455 0.00 0.00 0.00 4.70
4333 4548 7.040755 TGTTGTGGTCAGTTAATAAGGAATGTG 60.041 37.037 0.00 0.00 0.00 3.21
4337 4552 7.065443 GTGGTCAGTTAATAAGGAATGTGGTAC 59.935 40.741 0.00 0.00 0.00 3.34
4342 4557 6.260050 AGTTAATAAGGAATGTGGTACATGCG 59.740 38.462 0.00 0.00 44.52 4.73
4429 4650 4.597079 TCGCAAACTGTTGACTGAAAATC 58.403 39.130 0.00 0.00 36.83 2.17
4464 4709 8.483758 TGGGTACTTTAGAAAAATAGCTAGGAG 58.516 37.037 0.00 0.00 0.00 3.69
4496 4747 5.372547 AAGAAGAAATAAGACAAACGGGC 57.627 39.130 0.00 0.00 0.00 6.13
4498 4749 2.774687 AGAAATAAGACAAACGGGCGT 58.225 42.857 0.00 0.00 0.00 5.68
4511 4762 1.133869 GGGCGTCGAAAATGGAACG 59.866 57.895 0.00 0.00 0.00 3.95
4587 4897 1.133407 GACCTCAGGATCACTCACGTC 59.867 57.143 0.00 0.00 0.00 4.34
4644 4954 2.344535 CCCCTCTGGTGTTTTGCTG 58.655 57.895 0.00 0.00 0.00 4.41
4646 4956 0.468029 CCCTCTGGTGTTTTGCTGGT 60.468 55.000 0.00 0.00 0.00 4.00
4652 4962 3.317711 TCTGGTGTTTTGCTGGTAATGTG 59.682 43.478 0.00 0.00 0.00 3.21
4655 4965 4.343526 TGGTGTTTTGCTGGTAATGTGAAT 59.656 37.500 0.00 0.00 0.00 2.57
4656 4966 5.163364 TGGTGTTTTGCTGGTAATGTGAATT 60.163 36.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.793252 CATGTTTTCTTAGGTTTATTCTGGATG 57.207 33.333 0.00 0.00 0.00 3.51
5 6 9.753674 ATCATGTTTTCTTAGGTTTATTCTGGA 57.246 29.630 0.00 0.00 0.00 3.86
8 9 9.981460 AGGATCATGTTTTCTTAGGTTTATTCT 57.019 29.630 0.00 0.00 0.00 2.40
11 12 9.853177 CCTAGGATCATGTTTTCTTAGGTTTAT 57.147 33.333 1.05 0.00 37.09 1.40
12 13 7.773690 GCCTAGGATCATGTTTTCTTAGGTTTA 59.226 37.037 14.75 0.00 41.42 2.01
13 14 6.603599 GCCTAGGATCATGTTTTCTTAGGTTT 59.396 38.462 14.75 0.00 41.42 3.27
14 15 6.122964 GCCTAGGATCATGTTTTCTTAGGTT 58.877 40.000 14.75 0.00 41.42 3.50
15 16 5.191722 TGCCTAGGATCATGTTTTCTTAGGT 59.808 40.000 14.75 0.00 41.42 3.08
16 17 5.684704 TGCCTAGGATCATGTTTTCTTAGG 58.315 41.667 14.75 18.25 41.97 2.69
17 18 6.481644 GTCTGCCTAGGATCATGTTTTCTTAG 59.518 42.308 14.75 0.00 0.00 2.18
18 19 6.070251 TGTCTGCCTAGGATCATGTTTTCTTA 60.070 38.462 14.75 0.00 0.00 2.10
19 20 5.189180 GTCTGCCTAGGATCATGTTTTCTT 58.811 41.667 14.75 0.00 0.00 2.52
20 21 4.225942 TGTCTGCCTAGGATCATGTTTTCT 59.774 41.667 14.75 0.00 0.00 2.52
21 22 4.333926 GTGTCTGCCTAGGATCATGTTTTC 59.666 45.833 14.75 0.00 0.00 2.29
22 23 4.018960 AGTGTCTGCCTAGGATCATGTTTT 60.019 41.667 14.75 0.00 0.00 2.43
23 24 3.521126 AGTGTCTGCCTAGGATCATGTTT 59.479 43.478 14.75 0.00 0.00 2.83
24 25 3.110705 AGTGTCTGCCTAGGATCATGTT 58.889 45.455 14.75 0.00 0.00 2.71
25 26 2.756907 AGTGTCTGCCTAGGATCATGT 58.243 47.619 14.75 0.00 0.00 3.21
26 27 3.133542 TCAAGTGTCTGCCTAGGATCATG 59.866 47.826 14.75 0.00 0.00 3.07
27 28 3.133721 GTCAAGTGTCTGCCTAGGATCAT 59.866 47.826 14.75 0.00 0.00 2.45
28 29 2.497675 GTCAAGTGTCTGCCTAGGATCA 59.502 50.000 14.75 0.10 0.00 2.92
29 30 2.497675 TGTCAAGTGTCTGCCTAGGATC 59.502 50.000 14.75 0.00 0.00 3.36
30 31 2.540383 TGTCAAGTGTCTGCCTAGGAT 58.460 47.619 14.75 0.00 0.00 3.24
31 32 2.009681 TGTCAAGTGTCTGCCTAGGA 57.990 50.000 14.75 0.00 0.00 2.94
32 33 2.027745 ACATGTCAAGTGTCTGCCTAGG 60.028 50.000 3.67 3.67 0.00 3.02
33 34 3.325293 ACATGTCAAGTGTCTGCCTAG 57.675 47.619 0.00 0.00 0.00 3.02
34 35 3.557054 GGAACATGTCAAGTGTCTGCCTA 60.557 47.826 0.00 0.00 0.00 3.93
35 36 2.498167 GAACATGTCAAGTGTCTGCCT 58.502 47.619 0.00 0.00 0.00 4.75
36 37 1.537202 GGAACATGTCAAGTGTCTGCC 59.463 52.381 0.00 0.00 0.00 4.85
37 38 1.537202 GGGAACATGTCAAGTGTCTGC 59.463 52.381 0.00 0.00 0.00 4.26
38 39 2.154462 GGGGAACATGTCAAGTGTCTG 58.846 52.381 0.00 0.00 0.00 3.51
39 40 1.073923 GGGGGAACATGTCAAGTGTCT 59.926 52.381 0.00 0.00 0.00 3.41
40 41 1.073923 AGGGGGAACATGTCAAGTGTC 59.926 52.381 0.00 0.00 0.00 3.67
41 42 1.073923 GAGGGGGAACATGTCAAGTGT 59.926 52.381 0.00 0.00 0.00 3.55
42 43 1.073763 TGAGGGGGAACATGTCAAGTG 59.926 52.381 0.00 0.00 0.00 3.16
43 44 1.352352 CTGAGGGGGAACATGTCAAGT 59.648 52.381 0.00 0.00 0.00 3.16
44 45 1.952367 GCTGAGGGGGAACATGTCAAG 60.952 57.143 0.00 0.00 0.00 3.02
45 46 0.038166 GCTGAGGGGGAACATGTCAA 59.962 55.000 0.00 0.00 0.00 3.18
46 47 1.685224 GCTGAGGGGGAACATGTCA 59.315 57.895 0.00 0.00 0.00 3.58
47 48 1.077429 GGCTGAGGGGGAACATGTC 60.077 63.158 0.00 0.00 0.00 3.06
48 49 1.542375 AGGCTGAGGGGGAACATGT 60.542 57.895 0.00 0.00 0.00 3.21
49 50 1.225704 GAGGCTGAGGGGGAACATG 59.774 63.158 0.00 0.00 0.00 3.21
50 51 2.003548 GGAGGCTGAGGGGGAACAT 61.004 63.158 0.00 0.00 0.00 2.71
51 52 2.610859 GGAGGCTGAGGGGGAACA 60.611 66.667 0.00 0.00 0.00 3.18
52 53 2.610859 TGGAGGCTGAGGGGGAAC 60.611 66.667 0.00 0.00 0.00 3.62
53 54 2.285668 CTGGAGGCTGAGGGGGAA 60.286 66.667 0.00 0.00 0.00 3.97
54 55 4.421554 CCTGGAGGCTGAGGGGGA 62.422 72.222 0.00 0.00 0.00 4.81
64 65 4.113815 TTGCGATGGGCCTGGAGG 62.114 66.667 4.53 0.00 42.61 4.30
65 66 2.515523 CTTGCGATGGGCCTGGAG 60.516 66.667 4.53 0.00 42.61 3.86
66 67 4.113815 CCTTGCGATGGGCCTGGA 62.114 66.667 4.53 0.00 42.61 3.86
67 68 3.643595 TTCCTTGCGATGGGCCTGG 62.644 63.158 4.53 0.00 42.61 4.45
68 69 1.660560 CTTTCCTTGCGATGGGCCTG 61.661 60.000 4.53 0.00 42.61 4.85
69 70 1.379044 CTTTCCTTGCGATGGGCCT 60.379 57.895 4.53 0.00 42.61 5.19
70 71 3.068729 GCTTTCCTTGCGATGGGCC 62.069 63.158 0.00 0.00 42.61 5.80
71 72 2.491621 GCTTTCCTTGCGATGGGC 59.508 61.111 0.00 0.00 43.96 5.36
78 79 2.812011 TCTAGGTTTTCGCTTTCCTTGC 59.188 45.455 0.00 0.00 0.00 4.01
79 80 5.629079 AATCTAGGTTTTCGCTTTCCTTG 57.371 39.130 0.00 0.00 0.00 3.61
80 81 5.564848 GCAAATCTAGGTTTTCGCTTTCCTT 60.565 40.000 0.00 0.00 0.00 3.36
81 82 4.082733 GCAAATCTAGGTTTTCGCTTTCCT 60.083 41.667 0.00 0.00 0.00 3.36
82 83 4.082733 AGCAAATCTAGGTTTTCGCTTTCC 60.083 41.667 7.34 0.00 0.00 3.13
83 84 5.048153 AGCAAATCTAGGTTTTCGCTTTC 57.952 39.130 7.34 0.00 0.00 2.62
84 85 5.453567 AAGCAAATCTAGGTTTTCGCTTT 57.546 34.783 16.42 5.45 32.05 3.51
85 86 5.453567 AAAGCAAATCTAGGTTTTCGCTT 57.546 34.783 16.42 16.42 33.32 4.68
86 87 6.456988 CGATAAAGCAAATCTAGGTTTTCGCT 60.457 38.462 7.34 7.34 37.75 4.93
87 88 5.677178 CGATAAAGCAAATCTAGGTTTTCGC 59.323 40.000 0.00 0.25 37.75 4.70
88 89 6.036735 TCCGATAAAGCAAATCTAGGTTTTCG 59.963 38.462 9.87 9.87 37.75 3.46
89 90 7.316544 TCCGATAAAGCAAATCTAGGTTTTC 57.683 36.000 0.00 0.00 37.75 2.29
90 91 7.881775 ATCCGATAAAGCAAATCTAGGTTTT 57.118 32.000 0.00 0.00 37.75 2.43
91 92 9.220767 GATATCCGATAAAGCAAATCTAGGTTT 57.779 33.333 0.00 0.00 39.66 3.27
92 93 8.375506 TGATATCCGATAAAGCAAATCTAGGTT 58.624 33.333 0.00 0.00 0.00 3.50
93 94 7.907389 TGATATCCGATAAAGCAAATCTAGGT 58.093 34.615 0.00 0.00 0.00 3.08
94 95 8.777865 TTGATATCCGATAAAGCAAATCTAGG 57.222 34.615 0.00 0.00 0.00 3.02
96 97 8.708742 CGTTTGATATCCGATAAAGCAAATCTA 58.291 33.333 0.00 0.00 0.00 1.98
97 98 7.307989 CCGTTTGATATCCGATAAAGCAAATCT 60.308 37.037 0.00 0.00 0.00 2.40
98 99 6.797033 CCGTTTGATATCCGATAAAGCAAATC 59.203 38.462 0.00 8.94 0.00 2.17
99 100 6.293955 CCCGTTTGATATCCGATAAAGCAAAT 60.294 38.462 0.00 0.00 0.00 2.32
100 101 5.008217 CCCGTTTGATATCCGATAAAGCAAA 59.992 40.000 0.00 8.94 0.00 3.68
101 102 4.513692 CCCGTTTGATATCCGATAAAGCAA 59.486 41.667 0.00 0.00 0.00 3.91
102 103 4.062293 CCCGTTTGATATCCGATAAAGCA 58.938 43.478 0.00 0.00 0.00 3.91
103 104 4.312443 TCCCGTTTGATATCCGATAAAGC 58.688 43.478 0.00 0.00 0.00 3.51
104 105 5.989777 AGTTCCCGTTTGATATCCGATAAAG 59.010 40.000 0.00 0.00 0.00 1.85
105 106 5.920903 AGTTCCCGTTTGATATCCGATAAA 58.079 37.500 0.00 0.00 0.00 1.40
106 107 5.510179 GGAGTTCCCGTTTGATATCCGATAA 60.510 44.000 0.00 0.00 0.00 1.75
107 108 4.021719 GGAGTTCCCGTTTGATATCCGATA 60.022 45.833 0.00 0.00 0.00 2.92
108 109 3.244112 GGAGTTCCCGTTTGATATCCGAT 60.244 47.826 0.00 0.00 0.00 4.18
109 110 2.101917 GGAGTTCCCGTTTGATATCCGA 59.898 50.000 0.00 0.00 0.00 4.55
110 111 2.480845 GGAGTTCCCGTTTGATATCCG 58.519 52.381 0.00 0.00 0.00 4.18
122 123 3.504520 TGTTTTATTTGCTCGGAGTTCCC 59.495 43.478 6.90 0.00 0.00 3.97
123 124 4.473199 GTGTTTTATTTGCTCGGAGTTCC 58.527 43.478 6.90 0.00 0.00 3.62
124 125 4.215613 AGGTGTTTTATTTGCTCGGAGTTC 59.784 41.667 6.90 0.00 0.00 3.01
125 126 4.142038 AGGTGTTTTATTTGCTCGGAGTT 58.858 39.130 6.90 0.00 0.00 3.01
126 127 3.751518 AGGTGTTTTATTTGCTCGGAGT 58.248 40.909 6.90 0.00 0.00 3.85
127 128 4.766404 AAGGTGTTTTATTTGCTCGGAG 57.234 40.909 0.00 0.00 0.00 4.63
128 129 4.580995 TGAAAGGTGTTTTATTTGCTCGGA 59.419 37.500 0.00 0.00 0.00 4.55
129 130 4.865776 TGAAAGGTGTTTTATTTGCTCGG 58.134 39.130 0.00 0.00 0.00 4.63
130 131 6.820470 TTTGAAAGGTGTTTTATTTGCTCG 57.180 33.333 0.00 0.00 0.00 5.03
131 132 7.125755 GCTTTTGAAAGGTGTTTTATTTGCTC 58.874 34.615 5.70 0.00 36.53 4.26
132 133 6.597280 TGCTTTTGAAAGGTGTTTTATTTGCT 59.403 30.769 5.70 0.00 36.53 3.91
133 134 6.780127 TGCTTTTGAAAGGTGTTTTATTTGC 58.220 32.000 5.70 0.00 36.53 3.68
134 135 7.904461 CACTGCTTTTGAAAGGTGTTTTATTTG 59.096 33.333 5.70 0.00 36.53 2.32
135 136 7.065683 CCACTGCTTTTGAAAGGTGTTTTATTT 59.934 33.333 5.70 0.00 36.53 1.40
136 137 6.538381 CCACTGCTTTTGAAAGGTGTTTTATT 59.462 34.615 5.70 0.00 36.53 1.40
137 138 6.048509 CCACTGCTTTTGAAAGGTGTTTTAT 58.951 36.000 5.70 0.00 36.53 1.40
138 139 5.415221 CCACTGCTTTTGAAAGGTGTTTTA 58.585 37.500 5.70 0.00 36.53 1.52
139 140 4.252878 CCACTGCTTTTGAAAGGTGTTTT 58.747 39.130 5.70 0.00 36.53 2.43
140 141 3.860641 CCACTGCTTTTGAAAGGTGTTT 58.139 40.909 5.70 0.00 36.53 2.83
141 142 2.418609 GCCACTGCTTTTGAAAGGTGTT 60.419 45.455 5.70 0.00 36.53 3.32
142 143 1.136891 GCCACTGCTTTTGAAAGGTGT 59.863 47.619 5.70 0.00 36.53 4.16
143 144 1.856802 GCCACTGCTTTTGAAAGGTG 58.143 50.000 5.70 5.94 36.53 4.00
155 156 2.825836 CCCGATCCAAGCCACTGC 60.826 66.667 0.00 0.00 37.95 4.40
156 157 1.450312 GACCCGATCCAAGCCACTG 60.450 63.158 0.00 0.00 0.00 3.66
157 158 2.990479 GACCCGATCCAAGCCACT 59.010 61.111 0.00 0.00 0.00 4.00
166 167 2.408022 CGTCGTCTGGACCCGATC 59.592 66.667 0.00 0.00 42.99 3.69
167 168 3.823330 GCGTCGTCTGGACCCGAT 61.823 66.667 10.27 0.00 42.99 4.18
170 171 3.310860 AATGGCGTCGTCTGGACCC 62.311 63.158 0.00 0.00 42.99 4.46
171 172 2.100631 CAATGGCGTCGTCTGGACC 61.101 63.158 0.00 0.00 42.99 4.46
172 173 0.460284 ATCAATGGCGTCGTCTGGAC 60.460 55.000 0.00 0.00 42.48 4.02
173 174 1.107945 TATCAATGGCGTCGTCTGGA 58.892 50.000 0.00 0.00 0.00 3.86
174 175 2.154854 ATATCAATGGCGTCGTCTGG 57.845 50.000 0.00 0.00 0.00 3.86
175 176 2.866156 ACAATATCAATGGCGTCGTCTG 59.134 45.455 0.00 0.00 0.00 3.51
176 177 3.179443 ACAATATCAATGGCGTCGTCT 57.821 42.857 0.00 0.00 0.00 4.18
177 178 3.601586 CGAACAATATCAATGGCGTCGTC 60.602 47.826 0.00 0.00 0.00 4.20
178 179 2.284150 CGAACAATATCAATGGCGTCGT 59.716 45.455 0.00 0.00 0.00 4.34
179 180 2.284150 ACGAACAATATCAATGGCGTCG 59.716 45.455 0.00 0.00 30.69 5.12
180 181 3.555956 AGACGAACAATATCAATGGCGTC 59.444 43.478 0.00 0.00 43.59 5.19
181 182 3.531538 AGACGAACAATATCAATGGCGT 58.468 40.909 0.00 0.00 36.24 5.68
182 183 4.033932 TCAAGACGAACAATATCAATGGCG 59.966 41.667 0.00 0.00 0.00 5.69
183 184 5.484173 TCAAGACGAACAATATCAATGGC 57.516 39.130 0.00 0.00 0.00 4.40
184 185 6.018751 ACGATCAAGACGAACAATATCAATGG 60.019 38.462 0.00 0.00 34.70 3.16
185 186 6.937457 ACGATCAAGACGAACAATATCAATG 58.063 36.000 0.00 0.00 34.70 2.82
186 187 7.096023 GCTACGATCAAGACGAACAATATCAAT 60.096 37.037 0.00 0.00 34.70 2.57
187 188 6.198403 GCTACGATCAAGACGAACAATATCAA 59.802 38.462 0.00 0.00 34.70 2.57
188 189 5.685954 GCTACGATCAAGACGAACAATATCA 59.314 40.000 0.00 0.00 34.70 2.15
189 190 5.685954 TGCTACGATCAAGACGAACAATATC 59.314 40.000 0.00 0.00 34.70 1.63
190 191 5.459107 GTGCTACGATCAAGACGAACAATAT 59.541 40.000 0.00 0.00 34.70 1.28
191 192 4.796830 GTGCTACGATCAAGACGAACAATA 59.203 41.667 0.00 0.00 34.70 1.90
192 193 3.612860 GTGCTACGATCAAGACGAACAAT 59.387 43.478 0.00 0.00 34.70 2.71
193 194 2.984471 GTGCTACGATCAAGACGAACAA 59.016 45.455 0.00 0.00 34.70 2.83
194 195 2.228103 AGTGCTACGATCAAGACGAACA 59.772 45.455 0.00 0.00 34.70 3.18
195 196 2.864968 AGTGCTACGATCAAGACGAAC 58.135 47.619 0.00 0.00 34.70 3.95
196 197 3.057806 TCAAGTGCTACGATCAAGACGAA 60.058 43.478 0.00 0.00 34.70 3.85
197 198 2.486592 TCAAGTGCTACGATCAAGACGA 59.513 45.455 0.00 0.00 34.70 4.20
198 199 2.863739 TCAAGTGCTACGATCAAGACG 58.136 47.619 0.00 0.00 0.00 4.18
199 200 5.786401 AAATCAAGTGCTACGATCAAGAC 57.214 39.130 0.00 0.00 0.00 3.01
200 201 5.931724 TCAAAATCAAGTGCTACGATCAAGA 59.068 36.000 0.00 0.00 0.00 3.02
201 202 6.128445 ACTCAAAATCAAGTGCTACGATCAAG 60.128 38.462 0.00 0.00 0.00 3.02
202 203 5.700832 ACTCAAAATCAAGTGCTACGATCAA 59.299 36.000 0.00 0.00 0.00 2.57
203 204 5.237815 ACTCAAAATCAAGTGCTACGATCA 58.762 37.500 0.00 0.00 0.00 2.92
204 205 5.786401 ACTCAAAATCAAGTGCTACGATC 57.214 39.130 0.00 0.00 0.00 3.69
205 206 7.849804 ATTACTCAAAATCAAGTGCTACGAT 57.150 32.000 0.00 0.00 0.00 3.73
206 207 7.815549 TGTATTACTCAAAATCAAGTGCTACGA 59.184 33.333 0.00 0.00 0.00 3.43
207 208 7.959733 TGTATTACTCAAAATCAAGTGCTACG 58.040 34.615 0.00 0.00 0.00 3.51
208 209 9.760660 CTTGTATTACTCAAAATCAAGTGCTAC 57.239 33.333 0.00 0.00 0.00 3.58
209 210 8.946085 CCTTGTATTACTCAAAATCAAGTGCTA 58.054 33.333 0.00 0.00 30.45 3.49
210 211 7.665559 TCCTTGTATTACTCAAAATCAAGTGCT 59.334 33.333 0.00 0.00 30.45 4.40
211 212 7.816640 TCCTTGTATTACTCAAAATCAAGTGC 58.183 34.615 0.00 0.00 30.45 4.40
226 227 9.073475 CGGGAATTCCAAATAATCCTTGTATTA 57.927 33.333 25.67 0.00 37.91 0.98
227 228 7.471399 GCGGGAATTCCAAATAATCCTTGTATT 60.471 37.037 25.67 0.00 37.91 1.89
228 229 6.015434 GCGGGAATTCCAAATAATCCTTGTAT 60.015 38.462 25.67 0.00 37.91 2.29
229 230 5.300792 GCGGGAATTCCAAATAATCCTTGTA 59.699 40.000 25.67 0.00 37.91 2.41
230 231 4.099419 GCGGGAATTCCAAATAATCCTTGT 59.901 41.667 25.67 0.00 37.91 3.16
231 232 4.099266 TGCGGGAATTCCAAATAATCCTTG 59.901 41.667 25.67 2.13 37.91 3.61
232 233 4.285863 TGCGGGAATTCCAAATAATCCTT 58.714 39.130 25.67 0.00 37.91 3.36
233 234 3.909732 TGCGGGAATTCCAAATAATCCT 58.090 40.909 25.67 0.00 37.91 3.24
234 235 4.664150 TTGCGGGAATTCCAAATAATCC 57.336 40.909 25.67 5.01 37.91 3.01
235 236 6.976636 TTTTTGCGGGAATTCCAAATAATC 57.023 33.333 25.67 5.74 37.91 1.75
261 262 9.778741 GTTTCCTTTCCTTTTCCAAATAATTCT 57.221 29.630 0.00 0.00 0.00 2.40
262 263 8.708742 CGTTTCCTTTCCTTTTCCAAATAATTC 58.291 33.333 0.00 0.00 0.00 2.17
263 264 8.425703 TCGTTTCCTTTCCTTTTCCAAATAATT 58.574 29.630 0.00 0.00 0.00 1.40
264 265 7.958088 TCGTTTCCTTTCCTTTTCCAAATAAT 58.042 30.769 0.00 0.00 0.00 1.28
265 266 7.349412 TCGTTTCCTTTCCTTTTCCAAATAA 57.651 32.000 0.00 0.00 0.00 1.40
266 267 6.963083 TCGTTTCCTTTCCTTTTCCAAATA 57.037 33.333 0.00 0.00 0.00 1.40
267 268 5.862678 TCGTTTCCTTTCCTTTTCCAAAT 57.137 34.783 0.00 0.00 0.00 2.32
268 269 5.662674 TTCGTTTCCTTTCCTTTTCCAAA 57.337 34.783 0.00 0.00 0.00 3.28
269 270 5.862678 ATTCGTTTCCTTTCCTTTTCCAA 57.137 34.783 0.00 0.00 0.00 3.53
270 271 5.862678 AATTCGTTTCCTTTCCTTTTCCA 57.137 34.783 0.00 0.00 0.00 3.53
276 277 9.238368 TGAACAATATAATTCGTTTCCTTTCCT 57.762 29.630 0.00 0.00 0.00 3.36
282 283 9.781834 TGTCAATGAACAATATAATTCGTTTCC 57.218 29.630 4.37 0.99 32.88 3.13
284 285 9.272901 CGTGTCAATGAACAATATAATTCGTTT 57.727 29.630 4.37 0.00 32.88 3.60
285 286 7.908082 CCGTGTCAATGAACAATATAATTCGTT 59.092 33.333 0.00 2.04 35.00 3.85
286 287 7.065324 ACCGTGTCAATGAACAATATAATTCGT 59.935 33.333 0.00 0.00 0.00 3.85
287 288 7.406553 ACCGTGTCAATGAACAATATAATTCG 58.593 34.615 0.00 0.00 0.00 3.34
293 294 3.063452 GCGACCGTGTCAATGAACAATAT 59.937 43.478 5.15 0.00 32.09 1.28
295 296 1.196808 GCGACCGTGTCAATGAACAAT 59.803 47.619 5.15 0.00 32.09 2.71
328 329 4.963373 TCCTTTCCTTTCGTCACATGTTA 58.037 39.130 0.00 0.00 0.00 2.41
367 368 2.041405 CACTCTCCCCCTCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
369 370 0.396556 GTCTCACTCTCCCCCTCTCC 60.397 65.000 0.00 0.00 0.00 3.71
372 373 1.755008 CGGTCTCACTCTCCCCCTC 60.755 68.421 0.00 0.00 0.00 4.30
373 374 2.239439 TCGGTCTCACTCTCCCCCT 61.239 63.158 0.00 0.00 0.00 4.79
374 375 2.053277 GTCGGTCTCACTCTCCCCC 61.053 68.421 0.00 0.00 0.00 5.40
375 376 2.408241 CGTCGGTCTCACTCTCCCC 61.408 68.421 0.00 0.00 0.00 4.81
376 377 3.053849 GCGTCGGTCTCACTCTCCC 62.054 68.421 0.00 0.00 0.00 4.30
377 378 2.486042 GCGTCGGTCTCACTCTCC 59.514 66.667 0.00 0.00 0.00 3.71
378 379 2.098680 CGCGTCGGTCTCACTCTC 59.901 66.667 0.00 0.00 0.00 3.20
590 607 1.230017 TTCCGGGAATGAAGGGGGA 60.230 57.895 5.09 0.00 0.00 4.81
641 659 1.335964 CGACGCTCACCTCAAGAAGAA 60.336 52.381 0.00 0.00 0.00 2.52
677 695 1.078426 AAATCGACGGGGGAGCAAG 60.078 57.895 0.00 0.00 0.00 4.01
678 696 1.376683 CAAATCGACGGGGGAGCAA 60.377 57.895 0.00 0.00 0.00 3.91
680 698 2.513897 CCAAATCGACGGGGGAGC 60.514 66.667 0.00 0.00 0.00 4.70
681 699 1.449601 CACCAAATCGACGGGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
682 700 2.666207 CACCAAATCGACGGGGGA 59.334 61.111 0.00 0.00 0.00 4.81
725 745 0.949105 TTTCTCCAGGAAAGCGCGAC 60.949 55.000 12.10 0.04 38.81 5.19
726 746 0.036388 ATTTCTCCAGGAAAGCGCGA 60.036 50.000 12.10 0.00 45.61 5.87
727 747 0.375106 GATTTCTCCAGGAAAGCGCG 59.625 55.000 0.00 0.00 45.61 6.86
734 758 1.195115 CCAGGTCGATTTCTCCAGGA 58.805 55.000 0.00 0.00 30.87 3.86
756 780 0.691078 ATACGCCCACCCTCTGATGT 60.691 55.000 0.00 0.00 0.00 3.06
878 909 1.447317 CCCAACGCATATCAGCACCC 61.447 60.000 0.00 0.00 0.00 4.61
889 920 1.069090 GATCCTATCGCCCAACGCA 59.931 57.895 0.00 0.00 43.23 5.24
933 964 4.658063 AGTTTTCCATACACCAATCCGAA 58.342 39.130 0.00 0.00 0.00 4.30
949 980 0.784778 CGTGGCGTCAGAGAGTTTTC 59.215 55.000 0.00 0.00 0.00 2.29
969 1000 2.328099 CCGACCAAGCCAGTCAAGC 61.328 63.158 0.00 0.00 33.70 4.01
971 1002 0.400213 ATTCCGACCAAGCCAGTCAA 59.600 50.000 0.00 0.00 33.70 3.18
976 1007 0.316841 GCAAAATTCCGACCAAGCCA 59.683 50.000 0.00 0.00 0.00 4.75
980 1011 0.316841 GCCTGCAAAATTCCGACCAA 59.683 50.000 0.00 0.00 0.00 3.67
1223 1258 5.600484 GCATCCCTCTACTACATATAGGCAT 59.400 44.000 0.00 0.00 32.08 4.40
1224 1259 4.956700 GCATCCCTCTACTACATATAGGCA 59.043 45.833 0.00 0.00 32.08 4.75
1225 1260 5.068460 CAGCATCCCTCTACTACATATAGGC 59.932 48.000 0.00 0.00 32.08 3.93
1226 1261 6.427441 TCAGCATCCCTCTACTACATATAGG 58.573 44.000 0.00 0.00 32.08 2.57
1227 1262 7.777440 TCATCAGCATCCCTCTACTACATATAG 59.223 40.741 0.00 0.00 34.25 1.31
1228 1263 7.643123 TCATCAGCATCCCTCTACTACATATA 58.357 38.462 0.00 0.00 0.00 0.86
1235 1270 3.327172 CCATTCATCAGCATCCCTCTACT 59.673 47.826 0.00 0.00 0.00 2.57
1240 1275 1.229131 ACCCATTCATCAGCATCCCT 58.771 50.000 0.00 0.00 0.00 4.20
1311 1346 4.675063 AATTGGTATGTGAGGTTTCCCT 57.325 40.909 0.00 0.00 46.66 4.20
1446 1481 3.001634 CACCACACGATACAGCATTGATC 59.998 47.826 0.00 0.00 0.00 2.92
1447 1482 2.938451 CACCACACGATACAGCATTGAT 59.062 45.455 0.00 0.00 0.00 2.57
1448 1483 2.345876 CACCACACGATACAGCATTGA 58.654 47.619 0.00 0.00 0.00 2.57
1449 1484 1.202065 GCACCACACGATACAGCATTG 60.202 52.381 0.00 0.00 0.00 2.82
1469 1504 7.333423 TCGAATTTAACATTTCTCTGGGTAGTG 59.667 37.037 0.00 0.00 0.00 2.74
1473 1508 6.884295 TGATCGAATTTAACATTTCTCTGGGT 59.116 34.615 0.00 0.00 0.00 4.51
1563 1598 5.052693 TCAAACCCTCCATGATTCCTATG 57.947 43.478 0.00 0.00 0.00 2.23
1572 1607 1.745087 CACGGATTCAAACCCTCCATG 59.255 52.381 0.00 0.00 0.00 3.66
1612 1647 3.435601 CCCCAGTCCAATGATCTAAAGGG 60.436 52.174 0.00 0.00 0.00 3.95
1635 1670 4.398988 TCACCCAAAATGTCATATCAGCAC 59.601 41.667 0.00 0.00 0.00 4.40
1697 1732 7.549147 AAGTACACAAAAGTAGGTAGATGGA 57.451 36.000 0.00 0.00 0.00 3.41
1796 1835 9.250246 GATTAGAAGGGTTCTATCAGCTACTAT 57.750 37.037 0.00 0.00 41.58 2.12
1829 1868 5.591099 ACAACAAGACTGTTTAAGCAATGG 58.409 37.500 0.00 0.00 43.45 3.16
1875 1914 3.384467 ACACCCAATATACATGGCAAAGC 59.616 43.478 0.00 0.00 36.58 3.51
1901 1940 0.953727 TCACACATGGCAAAGCAGAC 59.046 50.000 0.00 0.00 0.00 3.51
2028 2067 5.768317 CTGACCCGTTTTAATGAACACAAT 58.232 37.500 0.00 0.00 0.00 2.71
2079 2118 6.441088 AGGCTAGGAATGGGTAAAAGATAG 57.559 41.667 0.00 0.00 0.00 2.08
2080 2119 6.159751 ACAAGGCTAGGAATGGGTAAAAGATA 59.840 38.462 0.00 0.00 0.00 1.98
2124 2163 2.805657 GCACTACCGACAAACCAAGAGT 60.806 50.000 0.00 0.00 0.00 3.24
2137 2176 5.950758 ACTAGATATCTGAAGCACTACCG 57.049 43.478 15.79 0.00 0.00 4.02
2150 2189 9.823098 CTTTTCATAAGCATGCAACTAGATATC 57.177 33.333 21.98 0.00 31.73 1.63
2176 2216 5.003804 TCCTGCAGAAGAAATTTACTCACC 58.996 41.667 17.39 0.00 0.00 4.02
2205 2245 3.070018 GACGCATATAAGCTGAGCCATT 58.930 45.455 0.00 0.00 0.00 3.16
2376 2461 9.778741 TGAACAGATATTCCATTGATAACTACC 57.221 33.333 0.00 0.00 0.00 3.18
2402 2487 6.602009 CCCGAGTAACCCTTTCTGAATTTATT 59.398 38.462 0.00 0.00 0.00 1.40
2408 2493 1.002773 GCCCGAGTAACCCTTTCTGAA 59.997 52.381 0.00 0.00 0.00 3.02
2425 2510 0.761802 CTCTCCTGGGTTCTATGCCC 59.238 60.000 0.00 0.00 46.26 5.36
2511 2598 5.348997 ACTTCAAGCTATACGAAGTTTCTGC 59.651 40.000 12.48 0.00 45.35 4.26
2534 2621 7.435068 TCAAACTGCTAGAAAATCAGGTAAC 57.565 36.000 0.00 0.00 32.42 2.50
2538 2625 5.728898 GCGATCAAACTGCTAGAAAATCAGG 60.729 44.000 0.00 0.00 32.42 3.86
2551 2638 2.031769 TGAAACTGCTGCGATCAAACTG 60.032 45.455 0.00 0.00 0.00 3.16
2615 2703 3.131933 ACAAAACAACCAGCAATGCACTA 59.868 39.130 8.35 0.00 0.00 2.74
2701 2789 9.167311 GATGTTTGACTACTTTCCAGTATTGAT 57.833 33.333 0.00 0.00 34.83 2.57
2772 2860 7.013655 GGAGCACATGACATAAGGTGAAAATAT 59.986 37.037 0.00 0.00 33.16 1.28
2798 2886 4.539870 GATCATACATTGCCAAATCCACG 58.460 43.478 0.00 0.00 0.00 4.94
3131 3309 2.290260 ACATTTGACCGAAGATGCTCCA 60.290 45.455 0.00 0.00 0.00 3.86
3186 3364 8.547173 ACAAAGAGATCCAAAGAAGATATGACT 58.453 33.333 0.00 0.00 0.00 3.41
3191 3369 6.596888 CAGCACAAAGAGATCCAAAGAAGATA 59.403 38.462 0.00 0.00 0.00 1.98
3225 3404 4.456566 GGTTAAAATCAGCCGGTTTCACTA 59.543 41.667 1.90 0.00 0.00 2.74
3260 3439 2.167693 TCACGGTGTTCATCTGGGATAC 59.832 50.000 8.17 0.00 0.00 2.24
3359 3539 3.444916 GTGAATGCTCAAATGGCTCATG 58.555 45.455 0.00 0.00 31.88 3.07
3367 3547 4.789012 AATTCACGGTGAATGCTCAAAT 57.211 36.364 30.83 14.76 45.57 2.32
3418 3604 1.172812 GCTGACCAACACAGGGGAAC 61.173 60.000 0.00 0.00 36.09 3.62
3502 3688 1.401905 CAGAGGCGGCTTACCAATTTC 59.598 52.381 14.76 0.00 34.57 2.17
3535 3721 3.714391 GAATGCAGATTGATTGGAAGGC 58.286 45.455 0.00 0.00 0.00 4.35
3538 3724 5.185454 AGTACGAATGCAGATTGATTGGAA 58.815 37.500 0.00 0.00 0.00 3.53
3556 3742 1.002900 CACTGGGCAACACAAAGTACG 60.003 52.381 0.00 0.00 39.74 3.67
3617 3803 0.386476 TACGACGTTGCTCACCTGTT 59.614 50.000 5.50 0.00 0.00 3.16
3618 3804 0.039437 CTACGACGTTGCTCACCTGT 60.039 55.000 5.50 0.00 0.00 4.00
3648 3834 0.746923 GCTACTTTTTCCCGCCGGAT 60.747 55.000 5.05 0.00 38.24 4.18
3703 3889 8.091449 CCCAACTCCAGATTATAAGACATAGAC 58.909 40.741 0.00 0.00 0.00 2.59
3776 3962 2.912366 CGCTTCCGGTTTTTCTTGTAC 58.088 47.619 0.00 0.00 0.00 2.90
3779 3965 0.996727 CGCGCTTCCGGTTTTTCTTG 60.997 55.000 5.56 0.00 34.32 3.02
3790 3976 2.733671 GGTCCGTTTACGCGCTTCC 61.734 63.158 5.73 0.00 38.18 3.46
3850 4044 5.011635 AGGGGGTAAGCAAAATACAGTTTTG 59.988 40.000 8.47 8.47 41.09 2.44
3964 4159 0.684535 TTCATCCACAACGAGAGGCA 59.315 50.000 0.00 0.00 0.00 4.75
3975 4170 8.986477 AAGTTATTTGCTGTTTATTCATCCAC 57.014 30.769 0.00 0.00 0.00 4.02
4024 4219 5.875910 ACCGTCGTTTAATTACCAATCATCA 59.124 36.000 0.00 0.00 0.00 3.07
4109 4319 3.837999 CACGTACAATACAAACATGCACG 59.162 43.478 0.00 0.00 0.00 5.34
4177 4390 0.745468 ATCTCTACGGTTCCCTTCGC 59.255 55.000 0.00 0.00 0.00 4.70
4179 4392 5.349809 CACTTTATCTCTACGGTTCCCTTC 58.650 45.833 0.00 0.00 0.00 3.46
4181 4394 3.132467 GCACTTTATCTCTACGGTTCCCT 59.868 47.826 0.00 0.00 0.00 4.20
4182 4395 3.118884 TGCACTTTATCTCTACGGTTCCC 60.119 47.826 0.00 0.00 0.00 3.97
4185 4398 5.730550 TGATTGCACTTTATCTCTACGGTT 58.269 37.500 0.00 0.00 0.00 4.44
4215 4428 1.879380 CGGAGCAAACATGGACTTGAA 59.121 47.619 0.00 0.00 0.00 2.69
4242 4455 0.258774 AACACCACAGCCTGTCCTTT 59.741 50.000 0.00 0.00 0.00 3.11
4243 4456 0.466189 CAACACCACAGCCTGTCCTT 60.466 55.000 0.00 0.00 0.00 3.36
4286 4500 5.809001 ACATATATGGCATGTGTAAGAGGG 58.191 41.667 16.96 0.00 35.33 4.30
4333 4548 5.291293 ACTTTTGTGATTACGCATGTACC 57.709 39.130 0.00 0.00 36.39 3.34
4401 4622 6.403333 TCAGTCAACAGTTTGCGATAATAC 57.597 37.500 0.00 0.00 32.17 1.89
4419 4640 3.119495 CCCAAACATCCCGATTTTCAGTC 60.119 47.826 0.00 0.00 0.00 3.51
4429 4650 4.210724 TCTAAAGTACCCAAACATCCCG 57.789 45.455 0.00 0.00 0.00 5.14
4457 4702 1.065854 TCTTTTGCCTGAGCTCCTAGC 60.066 52.381 12.15 11.83 42.84 3.42
4464 4709 6.089476 GTCTTATTTCTTCTTTTGCCTGAGC 58.911 40.000 0.00 0.00 40.48 4.26
4470 4715 6.143919 CCCGTTTGTCTTATTTCTTCTTTTGC 59.856 38.462 0.00 0.00 0.00 3.68
4496 4747 3.548668 TGTATAGCGTTCCATTTTCGACG 59.451 43.478 0.00 0.00 38.45 5.12
4498 4749 6.148150 ACTTTTGTATAGCGTTCCATTTTCGA 59.852 34.615 0.00 0.00 0.00 3.71
4587 4897 1.135916 GCGCGTAGGTCTCATAGCTAG 60.136 57.143 8.43 0.00 38.83 3.42
4631 4941 3.317711 TCACATTACCAGCAAAACACCAG 59.682 43.478 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.