Multiple sequence alignment - TraesCS5B01G053800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G053800 chr5B 100.000 4254 0 0 1 4254 58891049 58895302 0.000000e+00 7856
1 TraesCS5B01G053800 chr5A 91.705 1941 108 21 570 2465 44945024 44946956 0.000000e+00 2643
2 TraesCS5B01G053800 chr5A 94.743 1655 71 9 2459 4109 44947003 44948645 0.000000e+00 2560
3 TraesCS5B01G053800 chr5A 91.845 515 32 8 1 510 44944250 44944759 0.000000e+00 710
4 TraesCS5B01G053800 chr5D 94.231 1664 69 15 2459 4109 56123899 56125548 0.000000e+00 2516
5 TraesCS5B01G053800 chr5D 90.590 1849 110 30 653 2465 56122032 56123852 0.000000e+00 2392
6 TraesCS5B01G053800 chr5D 93.881 523 22 8 9 525 56120884 56121402 0.000000e+00 780
7 TraesCS5B01G053800 chr7B 98.649 148 1 1 4108 4254 588087766 588087619 1.170000e-65 261
8 TraesCS5B01G053800 chr7B 98.621 145 2 0 4110 4254 645125161 645125017 1.520000e-64 257
9 TraesCS5B01G053800 chr7B 98.621 145 2 0 4110 4254 699828077 699827933 1.520000e-64 257
10 TraesCS5B01G053800 chr7B 98.621 145 2 0 4110 4254 700410740 700410884 1.520000e-64 257
11 TraesCS5B01G053800 chr6B 98.621 145 2 0 4110 4254 227272928 227272784 1.520000e-64 257
12 TraesCS5B01G053800 chr4A 98.621 145 2 0 4110 4254 137542468 137542324 1.520000e-64 257
13 TraesCS5B01G053800 chr1B 98.621 145 2 0 4110 4254 225811969 225811825 1.520000e-64 257
14 TraesCS5B01G053800 chr1B 98.621 145 2 0 4110 4254 385299101 385299245 1.520000e-64 257
15 TraesCS5B01G053800 chr1A 98.621 145 2 0 4110 4254 543930885 543931029 1.520000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G053800 chr5B 58891049 58895302 4253 False 7856 7856 100.000000 1 4254 1 chr5B.!!$F1 4253
1 TraesCS5B01G053800 chr5A 44944250 44948645 4395 False 1971 2643 92.764333 1 4109 3 chr5A.!!$F1 4108
2 TraesCS5B01G053800 chr5D 56120884 56125548 4664 False 1896 2516 92.900667 9 4109 3 chr5D.!!$F1 4100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 138 0.036010 AGAACAGGCCAGGTCAATCG 60.036 55.0 16.44 0.00 0.00 3.34 F
1491 2051 0.607112 TGCTCAAGCTCTGGTCTGAG 59.393 55.0 6.49 6.49 42.66 3.35 F
2073 2633 0.533755 ACACCTGTTGCTGCTCTCAC 60.534 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1523 2083 0.610232 AGAGCACCTTGATGGCAACC 60.610 55.000 0.00 0.00 40.22 3.77 R
2572 3203 0.886563 AGACAATGAAAGCTGGCAGC 59.113 50.000 31.56 31.56 42.84 5.25 R
3558 4190 1.282157 AGGTAACCCTGGCTTGCTTAG 59.718 52.381 0.00 0.00 40.58 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.935352 TGGTCATCTTTTTGTTTCCTGG 57.065 40.909 0.00 0.00 0.00 4.45
134 138 0.036010 AGAACAGGCCAGGTCAATCG 60.036 55.000 16.44 0.00 0.00 3.34
296 301 1.657594 CTCTTCATACACACTGCAGCG 59.342 52.381 15.27 6.98 0.00 5.18
302 307 2.730066 TACACACTGCAGCGCACCAT 62.730 55.000 15.27 0.00 33.79 3.55
328 333 1.153066 TTTCCACCGAGCAACTGCA 60.153 52.632 4.22 0.00 45.16 4.41
356 361 3.205733 TCCTTGGGTGGGTTTAGTTTCTT 59.794 43.478 0.00 0.00 0.00 2.52
357 362 3.320826 CCTTGGGTGGGTTTAGTTTCTTG 59.679 47.826 0.00 0.00 0.00 3.02
358 363 3.955524 TGGGTGGGTTTAGTTTCTTGA 57.044 42.857 0.00 0.00 0.00 3.02
359 364 4.463050 TGGGTGGGTTTAGTTTCTTGAT 57.537 40.909 0.00 0.00 0.00 2.57
360 365 4.403734 TGGGTGGGTTTAGTTTCTTGATC 58.596 43.478 0.00 0.00 0.00 2.92
361 366 3.762288 GGGTGGGTTTAGTTTCTTGATCC 59.238 47.826 0.00 0.00 0.00 3.36
362 367 3.762288 GGTGGGTTTAGTTTCTTGATCCC 59.238 47.826 0.00 0.00 34.77 3.85
363 368 4.508584 GGTGGGTTTAGTTTCTTGATCCCT 60.509 45.833 0.00 0.00 35.20 4.20
368 373 6.929049 GGGTTTAGTTTCTTGATCCCTTTTTG 59.071 38.462 0.00 0.00 0.00 2.44
390 395 3.127030 GTCCTTTTTGCTGAATCTACCCG 59.873 47.826 0.00 0.00 0.00 5.28
397 402 3.305720 TGCTGAATCTACCCGATTACCT 58.694 45.455 0.00 0.00 42.31 3.08
400 405 4.058817 CTGAATCTACCCGATTACCTTGC 58.941 47.826 0.00 0.00 42.31 4.01
401 406 3.181458 TGAATCTACCCGATTACCTTGCC 60.181 47.826 0.00 0.00 42.31 4.52
408 414 1.486726 CCGATTACCTTGCCTTCCTCT 59.513 52.381 0.00 0.00 0.00 3.69
410 416 2.743183 CGATTACCTTGCCTTCCTCTGG 60.743 54.545 0.00 0.00 0.00 3.86
475 481 4.714308 TCCTTTTCTCCCTTTTGCTGAAAA 59.286 37.500 0.00 0.00 35.94 2.29
505 511 5.381184 TTGCCCTGGCTAGATATGTTTTA 57.619 39.130 9.97 0.00 42.51 1.52
546 1060 7.775093 CCTATCATCTGGTTCTGTTCCAAATTA 59.225 37.037 0.00 0.00 34.35 1.40
551 1065 9.143631 CATCTGGTTCTGTTCCAAATTAATTTC 57.856 33.333 10.53 0.90 34.35 2.17
553 1067 5.923684 TGGTTCTGTTCCAAATTAATTTCGC 59.076 36.000 10.53 2.82 31.50 4.70
562 1076 7.401484 TCCAAATTAATTTCGCTGTTCAAAC 57.599 32.000 10.53 0.00 0.00 2.93
563 1077 6.980978 TCCAAATTAATTTCGCTGTTCAAACA 59.019 30.769 10.53 0.00 37.37 2.83
576 1090 5.220931 GCTGTTCAAACACAGAGTTCTTCAT 60.221 40.000 5.01 0.00 46.29 2.57
578 1092 7.308229 GCTGTTCAAACACAGAGTTCTTCATAT 60.308 37.037 5.01 0.00 46.29 1.78
579 1093 7.864686 TGTTCAAACACAGAGTTCTTCATATG 58.135 34.615 0.00 0.00 40.26 1.78
580 1094 7.498900 TGTTCAAACACAGAGTTCTTCATATGT 59.501 33.333 1.90 0.00 40.26 2.29
581 1095 7.658179 TCAAACACAGAGTTCTTCATATGTC 57.342 36.000 1.90 0.00 40.26 3.06
582 1096 7.445121 TCAAACACAGAGTTCTTCATATGTCT 58.555 34.615 1.90 0.00 40.26 3.41
583 1097 8.585018 TCAAACACAGAGTTCTTCATATGTCTA 58.415 33.333 1.90 0.00 40.26 2.59
584 1098 8.651588 CAAACACAGAGTTCTTCATATGTCTAC 58.348 37.037 1.90 0.00 40.26 2.59
585 1099 6.868622 ACACAGAGTTCTTCATATGTCTACC 58.131 40.000 1.90 0.00 0.00 3.18
586 1100 6.437477 ACACAGAGTTCTTCATATGTCTACCA 59.563 38.462 1.90 0.00 0.00 3.25
587 1101 7.039011 ACACAGAGTTCTTCATATGTCTACCAA 60.039 37.037 1.90 0.00 0.00 3.67
588 1102 7.276658 CACAGAGTTCTTCATATGTCTACCAAC 59.723 40.741 1.90 0.00 0.00 3.77
590 1104 8.687242 CAGAGTTCTTCATATGTCTACCAACTA 58.313 37.037 1.90 0.00 0.00 2.24
646 1173 9.672673 ATTTATTCTGTTGAGTAATGCTAGTGT 57.327 29.630 0.00 0.00 0.00 3.55
648 1175 9.582431 TTATTCTGTTGAGTAATGCTAGTGTAC 57.418 33.333 0.00 0.00 0.00 2.90
649 1176 5.962433 TCTGTTGAGTAATGCTAGTGTACC 58.038 41.667 0.00 0.00 0.00 3.34
651 1178 5.962433 TGTTGAGTAATGCTAGTGTACCTC 58.038 41.667 0.00 0.00 0.00 3.85
668 1199 2.233271 CCTCTTTCTTTTCCTGCTGCA 58.767 47.619 0.88 0.88 0.00 4.41
670 1201 2.620115 CTCTTTCTTTTCCTGCTGCACA 59.380 45.455 0.00 0.00 0.00 4.57
682 1213 1.558294 TGCTGCACATCAGAGGAAGAT 59.442 47.619 0.00 0.00 45.72 2.40
686 1220 1.669779 GCACATCAGAGGAAGATGCAC 59.330 52.381 0.00 0.00 45.19 4.57
698 1232 5.128919 AGGAAGATGCACACCAGAATTATC 58.871 41.667 0.00 0.00 0.00 1.75
715 1249 6.712095 AGAATTATCTGTTTGAGTTGTGAGCA 59.288 34.615 0.00 0.00 33.59 4.26
719 1253 1.942657 TGTTTGAGTTGTGAGCAGAGC 59.057 47.619 0.00 0.00 0.00 4.09
720 1254 2.216898 GTTTGAGTTGTGAGCAGAGCT 58.783 47.619 0.00 0.00 43.88 4.09
732 1266 3.304911 AGCAGAGCTCTACCTGTCATA 57.695 47.619 17.75 0.00 30.62 2.15
756 1290 7.602517 ACCATTTTCTTCTCTTAAGATGACG 57.397 36.000 5.44 4.23 35.92 4.35
784 1324 3.190118 CCAGCTTAGCTTCTTTGGAGTTG 59.810 47.826 3.00 0.00 36.40 3.16
797 1337 7.452880 TCTTTGGAGTTGAACCAGAAATATG 57.547 36.000 0.00 0.00 38.70 1.78
805 1345 9.654663 GAGTTGAACCAGAAATATGTAACTAGT 57.345 33.333 0.00 0.00 0.00 2.57
836 1376 5.499004 TTGTAGGGCATTTAAGAGTGAGT 57.501 39.130 0.00 0.00 0.00 3.41
930 1473 5.785423 TCTTCTTTCCCTCAGGTTCTTATCA 59.215 40.000 0.00 0.00 0.00 2.15
981 1524 7.271511 ACACATATCTGAAGCTTCTAAGAAGG 58.728 38.462 26.09 15.98 0.00 3.46
995 1538 7.227711 GCTTCTAAGAAGGAAATTCCATACTCC 59.772 40.741 15.21 0.00 39.61 3.85
1092 1636 7.769044 GGTAAACCTGCATCTCTCATTTAACTA 59.231 37.037 0.00 0.00 0.00 2.24
1098 1642 9.330063 CCTGCATCTCTCATTTAACTATTGTTA 57.670 33.333 0.00 0.00 37.59 2.41
1141 1685 6.624297 TCCTCCTGATTCATCCTATTCTGTA 58.376 40.000 0.00 0.00 0.00 2.74
1147 1691 6.739112 TGATTCATCCTATTCTGTACAGACG 58.261 40.000 25.13 15.42 37.14 4.18
1230 1774 4.900635 TTTCTGCTCAGGAAACAAACTC 57.099 40.909 0.00 0.00 0.00 3.01
1282 1826 4.139038 GGTAGGTTTAGTTGCCAGTTTGA 58.861 43.478 0.00 0.00 0.00 2.69
1351 1911 7.337689 CCACAATCTCTTTATCCTGTCAATCAA 59.662 37.037 0.00 0.00 0.00 2.57
1362 1922 5.384336 TCCTGTCAATCAATCACTCCAAAA 58.616 37.500 0.00 0.00 0.00 2.44
1478 2038 4.751600 CAGTAGTGTTTCATGAGTGCTCAA 59.248 41.667 5.95 0.00 43.58 3.02
1491 2051 0.607112 TGCTCAAGCTCTGGTCTGAG 59.393 55.000 6.49 6.49 42.66 3.35
1523 2083 5.225642 GGAAAGCTGAAGAATGGTCAAAAG 58.774 41.667 0.00 0.00 0.00 2.27
1667 2227 1.815003 GGAGGTCAGAAAATGCTGGTG 59.185 52.381 0.00 0.00 36.55 4.17
1698 2258 1.569479 GGAGAACAACAGCCTCGCAC 61.569 60.000 0.00 0.00 0.00 5.34
1700 2260 1.954146 GAACAACAGCCTCGCACGA 60.954 57.895 0.00 0.00 0.00 4.35
1809 2369 5.499313 TGTCATGATGTTCTTCAGGCAATA 58.501 37.500 0.00 0.00 0.00 1.90
1937 2497 2.540515 CGTGACATCAAGGCGAGTAAT 58.459 47.619 0.00 0.00 0.00 1.89
2073 2633 0.533755 ACACCTGTTGCTGCTCTCAC 60.534 55.000 0.00 0.00 0.00 3.51
2085 2645 2.481952 CTGCTCTCACTTAACCTTGCAC 59.518 50.000 0.00 0.00 0.00 4.57
2304 2864 4.082571 TCCTCCTAGAAACGGTAAAGAACG 60.083 45.833 0.00 0.00 0.00 3.95
2311 2871 6.224420 AGAAACGGTAAAGAACGATTTCAG 57.776 37.500 0.00 0.00 35.08 3.02
2564 3195 9.103861 CCTCTCTGTCCTGAAAATTACTATTTC 57.896 37.037 0.00 0.00 37.31 2.17
2637 3268 2.558359 CCCACTGGTTCTGGATTTGTTC 59.442 50.000 0.00 0.00 0.00 3.18
2693 3324 6.440647 ACTGGTGTTCTCATTCTTAGGACATA 59.559 38.462 0.00 0.00 34.98 2.29
2694 3325 6.640518 TGGTGTTCTCATTCTTAGGACATAC 58.359 40.000 0.00 0.00 34.98 2.39
2695 3326 6.212589 TGGTGTTCTCATTCTTAGGACATACA 59.787 38.462 0.00 0.00 34.98 2.29
2696 3327 6.758886 GGTGTTCTCATTCTTAGGACATACAG 59.241 42.308 0.00 0.00 34.98 2.74
2697 3328 7.324178 GTGTTCTCATTCTTAGGACATACAGT 58.676 38.462 0.00 0.00 34.98 3.55
2707 3338 9.696572 TTCTTAGGACATACAGTATCTGTTAGT 57.303 33.333 7.70 7.07 42.59 2.24
3052 3683 1.212751 CTCCATGTCGACAGTCGCA 59.787 57.895 24.41 18.41 40.21 5.10
3292 3923 4.577693 GCACATGAAGGAGAATATGCTCAA 59.422 41.667 12.98 0.00 36.62 3.02
3332 3963 2.503765 TGGAGGGATGACGAAAAGCATA 59.496 45.455 0.00 0.00 0.00 3.14
3366 3998 6.419413 GGCATTTGATTTCGTTTGTGTTTCTA 59.581 34.615 0.00 0.00 0.00 2.10
3367 3999 7.116233 GGCATTTGATTTCGTTTGTGTTTCTAT 59.884 33.333 0.00 0.00 0.00 1.98
3373 4005 7.753132 TGATTTCGTTTGTGTTTCTATATTGCC 59.247 33.333 0.00 0.00 0.00 4.52
3374 4006 6.561737 TTCGTTTGTGTTTCTATATTGCCA 57.438 33.333 0.00 0.00 0.00 4.92
3375 4007 6.176975 TCGTTTGTGTTTCTATATTGCCAG 57.823 37.500 0.00 0.00 0.00 4.85
3440 4072 6.713762 TTTTGGTGATCAACAACTGAAGAT 57.286 33.333 25.60 0.00 37.81 2.40
3493 4125 0.251077 AAGGAAGAAGGGCACAGCTG 60.251 55.000 13.48 13.48 0.00 4.24
3545 4177 6.176014 ACTTTCAGAGGTTTGCTAGTTAGT 57.824 37.500 0.00 0.00 0.00 2.24
3558 4190 6.218108 TGCTAGTTAGTACCTTTCCTAAGC 57.782 41.667 0.00 0.00 0.00 3.09
3603 4240 5.356882 TTTGTGTGCACAGAAATAGTAGC 57.643 39.130 31.58 12.94 42.94 3.58
3604 4241 4.271696 TGTGTGCACAGAAATAGTAGCT 57.728 40.909 22.40 0.00 36.21 3.32
3605 4242 5.400066 TGTGTGCACAGAAATAGTAGCTA 57.600 39.130 22.40 0.00 36.21 3.32
3606 4243 5.168569 TGTGTGCACAGAAATAGTAGCTAC 58.831 41.667 22.40 16.43 36.21 3.58
3607 4244 5.047306 TGTGTGCACAGAAATAGTAGCTACT 60.047 40.000 28.50 28.50 37.06 2.57
3689 4326 4.206375 TCTGCATGAAAGACCTGTGAAAA 58.794 39.130 0.00 0.00 0.00 2.29
3690 4327 4.644234 TCTGCATGAAAGACCTGTGAAAAA 59.356 37.500 0.00 0.00 0.00 1.94
3718 4355 7.603404 CCACTCTGAAATGCCAATAATTCAAAA 59.397 33.333 0.00 0.00 31.94 2.44
3725 4362 9.763465 GAAATGCCAATAATTCAAAATGACAAG 57.237 29.630 0.00 0.00 0.00 3.16
3737 4374 9.617523 ATTCAAAATGACAAGGTCAAATCTTTT 57.382 25.926 2.87 3.40 45.96 2.27
3873 4510 5.046231 AGGTCTTGAATCTAAGAGGAACCAC 60.046 44.000 0.00 0.00 37.36 4.16
3963 4602 7.713073 ACAAAAGAACCTTCAAAACACTGAAAA 59.287 29.630 0.00 0.00 34.96 2.29
3976 4615 7.935338 AAACACTGAAAAGCACTATCAAATG 57.065 32.000 0.00 0.00 0.00 2.32
3984 4623 6.446781 AAAGCACTATCAAATGAGTCATGG 57.553 37.500 6.34 2.50 0.00 3.66
4017 4656 4.021192 ACAACATTCCATGTGAAATCACCC 60.021 41.667 10.83 0.00 45.88 4.61
4022 4661 3.950397 TCCATGTGAAATCACCCTGTAC 58.050 45.455 10.83 0.00 45.88 2.90
4109 4748 7.254522 CCGAGTTAAACAAAAGTACTTGCTGTA 60.255 37.037 18.92 6.71 0.00 2.74
4110 4749 8.117988 CGAGTTAAACAAAAGTACTTGCTGTAA 58.882 33.333 18.92 11.04 32.25 2.41
4111 4750 9.434559 GAGTTAAACAAAAGTACTTGCTGTAAG 57.565 33.333 18.92 3.84 42.30 2.34
4112 4751 9.169592 AGTTAAACAAAAGTACTTGCTGTAAGA 57.830 29.630 18.92 8.69 39.76 2.10
4113 4752 9.434559 GTTAAACAAAAGTACTTGCTGTAAGAG 57.565 33.333 18.92 2.87 39.76 2.85
4122 4761 2.982130 CTGTAAGAGCAGCCCGGT 59.018 61.111 0.00 0.00 34.07 5.28
4123 4762 1.448540 CTGTAAGAGCAGCCCGGTG 60.449 63.158 0.00 0.00 34.07 4.94
4124 4763 2.820037 GTAAGAGCAGCCCGGTGC 60.820 66.667 10.82 10.82 44.35 5.01
4125 4764 3.318384 TAAGAGCAGCCCGGTGCA 61.318 61.111 19.95 0.00 46.60 4.57
4126 4765 2.669133 TAAGAGCAGCCCGGTGCAT 61.669 57.895 19.95 8.89 46.60 3.96
4127 4766 2.874648 TAAGAGCAGCCCGGTGCATG 62.875 60.000 19.95 12.74 46.60 4.06
4129 4768 3.680620 GAGCAGCCCGGTGCATGTA 62.681 63.158 19.95 0.00 46.60 2.29
4130 4769 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
4131 4770 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
4132 4771 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
4133 4772 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
4139 4778 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4140 4779 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4141 4780 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4142 4781 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4145 4784 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4160 4799 3.400054 CAGGGTCGGGGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
4161 4800 4.735599 AGGGTCGGGGAAGGGTCC 62.736 72.222 0.00 0.00 44.10 4.46
4167 4806 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
4168 4807 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4169 4808 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4170 4809 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4171 4810 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4172 4811 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4173 4812 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4174 4813 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4184 4823 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
4185 4824 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
4186 4825 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
4187 4826 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
4188 4827 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
4189 4828 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
4190 4829 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
4191 4830 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
4192 4831 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
4193 4832 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
4194 4833 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
4195 4834 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
4196 4835 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
4197 4836 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
4198 4837 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
4199 4838 0.804933 GTACGCAGCCTTTCCCTACG 60.805 60.000 0.00 0.00 0.00 3.51
4200 4839 1.252904 TACGCAGCCTTTCCCTACGT 61.253 55.000 0.00 0.00 36.40 3.57
4201 4840 1.375523 CGCAGCCTTTCCCTACGTT 60.376 57.895 0.00 0.00 0.00 3.99
4202 4841 0.953960 CGCAGCCTTTCCCTACGTTT 60.954 55.000 0.00 0.00 0.00 3.60
4203 4842 0.803117 GCAGCCTTTCCCTACGTTTC 59.197 55.000 0.00 0.00 0.00 2.78
4204 4843 1.610886 GCAGCCTTTCCCTACGTTTCT 60.611 52.381 0.00 0.00 0.00 2.52
4205 4844 2.076863 CAGCCTTTCCCTACGTTTCTG 58.923 52.381 0.00 0.00 0.00 3.02
4206 4845 1.697982 AGCCTTTCCCTACGTTTCTGT 59.302 47.619 0.00 0.00 0.00 3.41
4207 4846 2.901839 AGCCTTTCCCTACGTTTCTGTA 59.098 45.455 0.00 0.00 0.00 2.74
4208 4847 3.325716 AGCCTTTCCCTACGTTTCTGTAA 59.674 43.478 0.00 0.00 0.00 2.41
4209 4848 3.683340 GCCTTTCCCTACGTTTCTGTAAG 59.317 47.826 0.00 0.00 0.00 2.34
4210 4849 4.562143 GCCTTTCCCTACGTTTCTGTAAGA 60.562 45.833 0.00 0.00 44.68 2.10
4222 4861 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
4223 4862 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
4224 4863 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
4225 4864 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
4226 4865 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
4227 4866 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
4228 4867 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
4229 4868 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
4230 4869 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4231 4870 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4232 4871 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
4233 4872 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
4234 4873 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
4235 4874 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
4236 4875 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
4237 4876 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
4238 4877 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
4239 4878 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
4240 4879 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
4241 4880 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
4242 4881 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
4243 4882 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
4244 4883 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.291971 CAGGAAACAAAAAGATGACCAAGG 58.708 41.667 0.00 0.00 0.00 3.61
44 45 0.321122 CACTTGTCCTCAGCTCCCAC 60.321 60.000 0.00 0.00 0.00 4.61
134 138 2.934083 GACTCAAAGGTCCCACTGC 58.066 57.895 0.00 0.00 0.00 4.40
296 301 2.489938 TGGAAACTCCACTATGGTGC 57.510 50.000 3.19 0.00 42.67 5.01
320 325 1.474077 CCAAGGATTAGGTGCAGTTGC 59.526 52.381 0.00 0.00 42.50 4.17
328 333 1.768265 AACCCACCCAAGGATTAGGT 58.232 50.000 0.00 0.00 0.00 3.08
343 348 6.665992 AAAAGGGATCAAGAAACTAAACCC 57.334 37.500 0.00 0.00 36.67 4.11
356 361 4.408596 AGCAAAAAGGACAAAAAGGGATCA 59.591 37.500 0.00 0.00 0.00 2.92
357 362 4.751600 CAGCAAAAAGGACAAAAAGGGATC 59.248 41.667 0.00 0.00 0.00 3.36
358 363 4.408596 TCAGCAAAAAGGACAAAAAGGGAT 59.591 37.500 0.00 0.00 0.00 3.85
359 364 3.772025 TCAGCAAAAAGGACAAAAAGGGA 59.228 39.130 0.00 0.00 0.00 4.20
360 365 4.135747 TCAGCAAAAAGGACAAAAAGGG 57.864 40.909 0.00 0.00 0.00 3.95
361 366 6.051074 AGATTCAGCAAAAAGGACAAAAAGG 58.949 36.000 0.00 0.00 0.00 3.11
362 367 7.169813 GGTAGATTCAGCAAAAAGGACAAAAAG 59.830 37.037 0.00 0.00 0.00 2.27
363 368 6.983890 GGTAGATTCAGCAAAAAGGACAAAAA 59.016 34.615 0.00 0.00 0.00 1.94
368 373 3.127030 CGGGTAGATTCAGCAAAAAGGAC 59.873 47.826 0.00 0.00 0.00 3.85
390 395 2.422093 CCCAGAGGAAGGCAAGGTAATC 60.422 54.545 0.00 0.00 33.47 1.75
400 405 1.676967 GCAGTTGCCCAGAGGAAGG 60.677 63.158 0.00 0.00 33.47 3.46
401 406 2.037136 CGCAGTTGCCCAGAGGAAG 61.037 63.158 0.00 0.00 37.91 3.46
475 481 1.145738 CTAGCCAGGGCAATTGGGTAT 59.854 52.381 13.63 0.00 44.90 2.73
546 1060 4.096382 ACTCTGTGTTTGAACAGCGAAATT 59.904 37.500 0.00 0.00 45.93 1.82
551 1065 2.609459 AGAACTCTGTGTTTGAACAGCG 59.391 45.455 0.00 0.00 45.93 5.18
562 1076 6.867550 TGGTAGACATATGAAGAACTCTGTG 58.132 40.000 10.38 0.00 0.00 3.66
563 1077 7.179338 AGTTGGTAGACATATGAAGAACTCTGT 59.821 37.037 10.38 0.00 0.00 3.41
624 1151 7.042335 GGTACACTAGCATTACTCAACAGAAT 58.958 38.462 0.00 0.00 0.00 2.40
628 1155 5.715279 AGAGGTACACTAGCATTACTCAACA 59.285 40.000 0.00 0.00 0.00 3.33
630 1157 6.852420 AAGAGGTACACTAGCATTACTCAA 57.148 37.500 0.00 0.00 0.00 3.02
631 1158 6.663953 AGAAAGAGGTACACTAGCATTACTCA 59.336 38.462 0.00 0.00 0.00 3.41
632 1159 7.102847 AGAAAGAGGTACACTAGCATTACTC 57.897 40.000 0.00 0.00 0.00 2.59
634 1161 8.549338 AAAAGAAAGAGGTACACTAGCATTAC 57.451 34.615 0.00 0.00 0.00 1.89
635 1162 7.822822 GGAAAAGAAAGAGGTACACTAGCATTA 59.177 37.037 0.00 0.00 0.00 1.90
641 1168 5.307196 AGCAGGAAAAGAAAGAGGTACACTA 59.693 40.000 0.00 0.00 0.00 2.74
643 1170 4.214332 CAGCAGGAAAAGAAAGAGGTACAC 59.786 45.833 0.00 0.00 0.00 2.90
644 1171 4.389374 CAGCAGGAAAAGAAAGAGGTACA 58.611 43.478 0.00 0.00 0.00 2.90
645 1172 3.189495 GCAGCAGGAAAAGAAAGAGGTAC 59.811 47.826 0.00 0.00 0.00 3.34
646 1173 3.181445 TGCAGCAGGAAAAGAAAGAGGTA 60.181 43.478 0.00 0.00 0.00 3.08
647 1174 2.234143 GCAGCAGGAAAAGAAAGAGGT 58.766 47.619 0.00 0.00 0.00 3.85
648 1175 2.030451 GTGCAGCAGGAAAAGAAAGAGG 60.030 50.000 0.00 0.00 0.00 3.69
649 1176 2.620115 TGTGCAGCAGGAAAAGAAAGAG 59.380 45.455 0.00 0.00 0.00 2.85
651 1178 3.005050 TGATGTGCAGCAGGAAAAGAAAG 59.995 43.478 0.00 0.00 0.00 2.62
668 1199 2.355513 GGTGTGCATCTTCCTCTGATGT 60.356 50.000 0.00 0.00 42.21 3.06
670 1201 1.911357 TGGTGTGCATCTTCCTCTGAT 59.089 47.619 0.00 0.00 0.00 2.90
698 1232 2.032204 GCTCTGCTCACAACTCAAACAG 60.032 50.000 0.00 0.00 0.00 3.16
715 1249 3.671740 TGGTATGACAGGTAGAGCTCT 57.328 47.619 22.17 22.17 0.00 4.09
719 1253 7.560368 AGAAGAAAATGGTATGACAGGTAGAG 58.440 38.462 0.00 0.00 0.00 2.43
720 1254 7.400339 AGAGAAGAAAATGGTATGACAGGTAGA 59.600 37.037 0.00 0.00 0.00 2.59
722 1256 7.496346 AGAGAAGAAAATGGTATGACAGGTA 57.504 36.000 0.00 0.00 0.00 3.08
732 1266 7.162082 ACGTCATCTTAAGAGAAGAAAATGGT 58.838 34.615 11.53 1.57 31.98 3.55
752 1286 2.168496 AGCTAAGCTGGTAAGACGTCA 58.832 47.619 19.50 0.00 37.57 4.35
756 1290 4.393371 CCAAAGAAGCTAAGCTGGTAAGAC 59.607 45.833 0.00 0.00 39.62 3.01
814 1354 5.499004 ACTCACTCTTAAATGCCCTACAA 57.501 39.130 0.00 0.00 0.00 2.41
930 1473 3.151912 AGCTCATGCAAAGAGGAGTTT 57.848 42.857 17.93 0.96 42.74 2.66
981 1524 5.591877 AGTCATTGCTGGAGTATGGAATTTC 59.408 40.000 0.00 0.00 0.00 2.17
1098 1642 6.734755 AGGAGGATATTAGGATGCTTCAGAAT 59.265 38.462 0.00 3.28 0.00 2.40
1115 1659 7.251936 ACAGAATAGGATGAATCAGGAGGATA 58.748 38.462 0.00 0.00 34.28 2.59
1117 1661 5.471424 ACAGAATAGGATGAATCAGGAGGA 58.529 41.667 0.00 0.00 0.00 3.71
1141 1685 0.895530 CCATGGAGTGGTACGTCTGT 59.104 55.000 5.56 0.00 43.44 3.41
1230 1774 2.033194 GCCGAAAGAACCCTGTCCG 61.033 63.158 0.00 0.00 0.00 4.79
1282 1826 4.670896 AAGCTTTTATGGTGCAAACTGT 57.329 36.364 0.00 0.00 0.00 3.55
1362 1922 6.321181 TGCCGCTTTCTAATAATTCAGGATTT 59.679 34.615 0.00 0.00 0.00 2.17
1478 2038 2.168106 CTGCATAACTCAGACCAGAGCT 59.832 50.000 0.00 0.00 39.26 4.09
1491 2051 3.347216 TCTTCAGCTTTCCCTGCATAAC 58.653 45.455 0.00 0.00 32.87 1.89
1523 2083 0.610232 AGAGCACCTTGATGGCAACC 60.610 55.000 0.00 0.00 40.22 3.77
1667 2227 6.183360 GGCTGTTGTTCTCCAGATAATTGTAC 60.183 42.308 0.00 0.00 0.00 2.90
1698 2258 3.670625 TGAACATACCAAAGAGGGTTCG 58.329 45.455 0.00 0.00 43.89 3.95
1700 2260 4.149598 GGTTGAACATACCAAAGAGGGTT 58.850 43.478 0.00 0.00 43.89 4.11
1809 2369 1.861982 AAGCGGATACTACTGTGGGT 58.138 50.000 0.00 0.00 0.00 4.51
1937 2497 3.582647 TCAGGTCCTTGTCAAGCAGAATA 59.417 43.478 7.09 0.00 0.00 1.75
2000 2560 1.265095 CTGATATGCGTCATGTTGCCC 59.735 52.381 8.96 0.00 0.00 5.36
2366 2927 8.915871 TGTATTCCGTACTATTGTACTGTTTC 57.084 34.615 14.19 3.39 44.97 2.78
2482 3110 8.477419 TCCAACTGTATTTCCTCTTCAAAAAT 57.523 30.769 0.00 0.00 0.00 1.82
2572 3203 0.886563 AGACAATGAAAGCTGGCAGC 59.113 50.000 31.56 31.56 42.84 5.25
2637 3268 6.029346 AGTGGCATAGAAAACATTTTCAGG 57.971 37.500 17.12 8.43 46.81 3.86
2707 3338 7.601886 CAGGTGCACATAATAATTGGACAAAAA 59.398 33.333 20.43 0.00 33.56 1.94
2779 3410 2.260844 TCACTTCTCTTTGCAGGGTG 57.739 50.000 0.00 0.00 0.00 4.61
3052 3683 3.084786 GCACTCACCCTTTAGCATCTTT 58.915 45.455 0.00 0.00 0.00 2.52
3259 3890 4.522789 TCTCCTTCATGTGCCTTTTTAACC 59.477 41.667 0.00 0.00 0.00 2.85
3292 3923 3.577848 TCCAATTTACAGCCATTGTTGCT 59.422 39.130 0.00 0.00 41.29 3.91
3332 3963 4.946157 ACGAAATCAAATGCCTCTCTTGAT 59.054 37.500 0.00 0.00 40.62 2.57
3457 4089 2.106511 TCCTTCACCTATAAGCCATGCC 59.893 50.000 0.00 0.00 0.00 4.40
3521 4153 6.592870 ACTAACTAGCAAACCTCTGAAAGTT 58.407 36.000 0.00 0.00 33.76 2.66
3526 4158 5.331069 AGGTACTAACTAGCAAACCTCTGA 58.669 41.667 0.00 0.00 36.02 3.27
3532 4164 7.064371 GCTTAGGAAAGGTACTAACTAGCAAAC 59.936 40.741 0.00 0.00 38.49 2.93
3545 4177 4.514401 GCTTGCTTAGCTTAGGAAAGGTA 58.486 43.478 8.07 0.00 46.77 3.08
3558 4190 1.282157 AGGTAACCCTGGCTTGCTTAG 59.718 52.381 0.00 0.00 40.58 2.18
3599 4236 8.752766 TTGACTAAACATTGTACAGTAGCTAC 57.247 34.615 16.43 16.43 0.00 3.58
3601 4238 7.442656 ACTTGACTAAACATTGTACAGTAGCT 58.557 34.615 0.00 0.00 0.00 3.32
3602 4239 7.653767 ACTTGACTAAACATTGTACAGTAGC 57.346 36.000 0.00 0.00 0.00 3.58
3689 4326 7.124599 TGAATTATTGGCATTTCAGAGTGGATT 59.875 33.333 0.00 0.00 0.00 3.01
3690 4327 6.608405 TGAATTATTGGCATTTCAGAGTGGAT 59.392 34.615 0.00 0.00 0.00 3.41
3718 4355 7.528996 TGATCAAAAGATTTGACCTTGTCAT 57.471 32.000 7.61 0.00 42.40 3.06
3725 4362 9.859427 TGATGTATTTGATCAAAAGATTTGACC 57.141 29.630 23.91 8.55 33.56 4.02
3737 4374 9.563748 TCAATAATCTGCTGATGTATTTGATCA 57.436 29.630 6.88 0.00 32.44 2.92
3963 4602 5.108187 ACCATGACTCATTTGATAGTGCT 57.892 39.130 0.00 0.00 0.00 4.40
3976 4615 6.371809 TGTTGTGAAGTTTTACCATGACTC 57.628 37.500 0.00 0.00 0.00 3.36
4049 4688 6.530181 GGACTGTTTGTTTGGTTTAACTTCTG 59.470 38.462 0.00 0.00 0.00 3.02
4051 4690 5.513849 CGGACTGTTTGTTTGGTTTAACTTC 59.486 40.000 0.00 0.00 0.00 3.01
4109 4748 4.039092 ATGCACCGGGCTGCTCTT 62.039 61.111 17.03 1.12 45.15 2.85
4110 4749 4.790962 CATGCACCGGGCTGCTCT 62.791 66.667 17.03 3.24 45.15 4.09
4111 4750 3.680620 TACATGCACCGGGCTGCTC 62.681 63.158 17.03 0.00 45.15 4.26
4112 4751 3.687321 CTACATGCACCGGGCTGCT 62.687 63.158 17.03 1.11 45.15 4.24
4113 4752 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
4114 4753 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
4115 4754 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
4116 4755 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
4117 4756 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
4143 4782 3.400054 GACCCTTCCCCGACCCTG 61.400 72.222 0.00 0.00 0.00 4.45
4144 4783 4.735599 GGACCCTTCCCCGACCCT 62.736 72.222 0.00 0.00 35.57 4.34
4150 4789 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
4151 4790 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4152 4791 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4153 4792 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4154 4793 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4155 4794 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4156 4795 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4157 4796 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4158 4797 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4163 4802 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
4164 4803 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
4165 4804 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
4166 4805 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
4167 4806 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
4168 4807 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
4169 4808 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
4170 4809 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
4171 4810 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
4172 4811 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
4173 4812 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
4174 4813 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
4175 4814 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
4176 4815 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
4177 4816 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
4178 4817 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
4179 4818 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
4180 4819 0.804933 CGTAGGGAAAGGCTGCGTAC 60.805 60.000 0.00 0.00 34.44 3.67
4181 4820 1.252904 ACGTAGGGAAAGGCTGCGTA 61.253 55.000 0.00 0.00 37.63 4.42
4182 4821 2.108278 AACGTAGGGAAAGGCTGCGT 62.108 55.000 0.00 0.00 40.76 5.24
4183 4822 0.953960 AAACGTAGGGAAAGGCTGCG 60.954 55.000 0.00 0.00 0.00 5.18
4184 4823 0.803117 GAAACGTAGGGAAAGGCTGC 59.197 55.000 0.00 0.00 0.00 5.25
4185 4824 2.076863 CAGAAACGTAGGGAAAGGCTG 58.923 52.381 0.00 0.00 0.00 4.85
4186 4825 1.697982 ACAGAAACGTAGGGAAAGGCT 59.302 47.619 0.00 0.00 0.00 4.58
4187 4826 2.180432 ACAGAAACGTAGGGAAAGGC 57.820 50.000 0.00 0.00 0.00 4.35
4188 4827 5.143376 TCTTACAGAAACGTAGGGAAAGG 57.857 43.478 0.00 0.00 0.00 3.11
4189 4828 5.169295 CCTCTTACAGAAACGTAGGGAAAG 58.831 45.833 0.00 0.00 0.00 2.62
4190 4829 4.562143 GCCTCTTACAGAAACGTAGGGAAA 60.562 45.833 0.00 0.00 0.00 3.13
4191 4830 3.056322 GCCTCTTACAGAAACGTAGGGAA 60.056 47.826 0.00 0.00 0.00 3.97
4192 4831 2.494870 GCCTCTTACAGAAACGTAGGGA 59.505 50.000 0.00 0.00 0.00 4.20
4193 4832 2.496470 AGCCTCTTACAGAAACGTAGGG 59.504 50.000 0.00 0.00 0.00 3.53
4194 4833 3.056749 ACAGCCTCTTACAGAAACGTAGG 60.057 47.826 0.00 0.00 0.00 3.18
4195 4834 4.175787 ACAGCCTCTTACAGAAACGTAG 57.824 45.455 0.00 0.00 0.00 3.51
4196 4835 4.595762 AACAGCCTCTTACAGAAACGTA 57.404 40.909 0.00 0.00 0.00 3.57
4197 4836 3.470645 AACAGCCTCTTACAGAAACGT 57.529 42.857 0.00 0.00 0.00 3.99
4198 4837 3.186613 GGAAACAGCCTCTTACAGAAACG 59.813 47.826 0.00 0.00 0.00 3.60
4199 4838 4.134563 TGGAAACAGCCTCTTACAGAAAC 58.865 43.478 0.00 0.00 35.01 2.78
4200 4839 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
4214 4853 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
4215 4854 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
4216 4855 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
4217 4856 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
4218 4857 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
4219 4858 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
4220 4859 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
4221 4860 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
4222 4861 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
4223 4862 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
4224 4863 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
4225 4864 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
4226 4865 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
4227 4866 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
4228 4867 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.