Multiple sequence alignment - TraesCS5B01G053600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G053600 chr5B 100.000 2823 0 0 693 3515 58758354 58755532 0.000000e+00 5214.0
1 TraesCS5B01G053600 chr5B 100.000 341 0 0 1 341 58759046 58758706 6.400000e-177 630.0
2 TraesCS5B01G053600 chr5B 97.253 182 4 1 2975 3155 55368172 55368353 1.230000e-79 307.0
3 TraesCS5B01G053600 chr5B 92.233 103 8 0 3155 3257 504946889 504946787 2.830000e-31 147.0
4 TraesCS5B01G053600 chr5B 79.699 133 20 6 2273 2403 81787785 81787912 4.830000e-14 89.8
5 TraesCS5B01G053600 chr5B 97.500 40 1 0 2938 2977 710812102 710812141 6.300000e-08 69.4
6 TraesCS5B01G053600 chr5B 100.000 35 0 0 2943 2977 19995270 19995304 8.140000e-07 65.8
7 TraesCS5B01G053600 chr5B 100.000 35 0 0 2943 2977 681730944 681730910 8.140000e-07 65.8
8 TraesCS5B01G053600 chr7B 95.266 1563 67 3 1008 2568 394825362 394826919 0.000000e+00 2470.0
9 TraesCS5B01G053600 chr7B 88.537 1230 106 18 1057 2275 399803913 399802708 0.000000e+00 1458.0
10 TraesCS5B01G053600 chr7B 89.578 1161 99 10 1057 2215 394864368 394865508 0.000000e+00 1454.0
11 TraesCS5B01G053600 chr7B 89.578 1161 99 10 1057 2215 394912533 394913673 0.000000e+00 1454.0
12 TraesCS5B01G053600 chr7B 97.285 221 6 0 2656 2876 394831577 394831797 3.310000e-100 375.0
13 TraesCS5B01G053600 chr7B 87.748 302 26 8 714 1009 394820499 394820795 3.360000e-90 342.0
14 TraesCS5B01G053600 chr7B 83.430 344 38 9 1 341 394820071 394820398 5.700000e-78 302.0
15 TraesCS5B01G053600 chr7B 87.222 180 17 5 700 878 686854021 686853847 2.140000e-47 200.0
16 TraesCS5B01G053600 chr7B 81.272 283 16 10 3257 3515 399875773 399875504 9.960000e-46 195.0
17 TraesCS5B01G053600 chr7B 97.647 85 2 0 2583 2667 394830626 394830710 2.830000e-31 147.0
18 TraesCS5B01G053600 chr7B 80.597 134 15 9 2273 2402 397446682 397446556 3.740000e-15 93.5
19 TraesCS5B01G053600 chr7B 90.196 51 3 2 2928 2977 143327179 143327228 8.140000e-07 65.8
20 TraesCS5B01G053600 chr7D 93.992 1498 78 9 762 2254 395076168 395077658 0.000000e+00 2257.0
21 TraesCS5B01G053600 chr7D 88.489 1251 112 16 1057 2298 396444961 396443734 0.000000e+00 1483.0
22 TraesCS5B01G053600 chr7D 90.711 1055 80 9 1164 2215 395295696 395296735 0.000000e+00 1389.0
23 TraesCS5B01G053600 chr7D 83.409 440 43 22 2410 2845 396446124 396445711 7.120000e-102 381.0
24 TraesCS5B01G053600 chr7D 84.366 339 40 8 2 338 395074479 395074806 1.570000e-83 320.0
25 TraesCS5B01G053600 chr7A 91.161 1482 103 16 1057 2532 448473293 448474752 0.000000e+00 1986.0
26 TraesCS5B01G053600 chr7A 89.270 1165 103 10 1057 2219 450092580 450091436 0.000000e+00 1439.0
27 TraesCS5B01G053600 chr7A 94.186 258 14 1 3258 3515 448475073 448475329 3.290000e-105 392.0
28 TraesCS5B01G053600 chr7A 86.928 306 17 4 2642 2945 448474786 448475070 4.380000e-84 322.0
29 TraesCS5B01G053600 chr7A 89.005 191 18 3 3264 3452 450283727 450283538 2.110000e-57 233.0
30 TraesCS5B01G053600 chr7A 86.631 187 18 7 697 878 47014230 47014414 2.140000e-47 200.0
31 TraesCS5B01G053600 chr7A 86.740 181 19 5 2978 3155 705487750 705487572 2.770000e-46 196.0
32 TraesCS5B01G053600 chr7A 85.492 193 21 7 2971 3159 51088287 51088476 9.960000e-46 195.0
33 TraesCS5B01G053600 chr7A 85.417 192 23 5 2971 3159 51256916 51257105 9.960000e-46 195.0
34 TraesCS5B01G053600 chr7A 85.870 184 21 5 2978 3158 308301547 308301728 1.290000e-44 191.0
35 TraesCS5B01G053600 chr7A 83.626 171 24 4 705 873 513561804 513561636 1.310000e-34 158.0
36 TraesCS5B01G053600 chr7A 96.667 60 2 0 3456 3515 450095531 450095472 2.230000e-17 100.0
37 TraesCS5B01G053600 chr1B 96.000 175 6 1 2978 3151 564720898 564721072 2.070000e-72 283.0
38 TraesCS5B01G053600 chr1B 97.368 38 0 1 2941 2977 662173733 662173770 2.930000e-06 63.9
39 TraesCS5B01G053600 chr4D 88.043 184 18 4 697 878 506089458 506089639 7.640000e-52 215.0
40 TraesCS5B01G053600 chr4D 77.882 321 69 2 2 321 16664431 16664750 7.700000e-47 198.0
41 TraesCS5B01G053600 chr1A 87.500 184 19 4 697 878 497184695 497184876 3.560000e-50 209.0
42 TraesCS5B01G053600 chr1A 86.667 180 19 5 2978 3154 576865995 576866172 9.960000e-46 195.0
43 TraesCS5B01G053600 chr1A 92.661 109 8 0 3152 3260 352843565 352843673 1.310000e-34 158.0
44 TraesCS5B01G053600 chr2D 86.264 182 20 5 2978 3156 91223041 91223220 3.580000e-45 193.0
45 TraesCS5B01G053600 chr2D 80.000 135 16 10 2273 2403 390705429 390705556 4.830000e-14 89.8
46 TraesCS5B01G053600 chr4B 86.441 177 19 5 2981 3154 526174400 526174226 4.630000e-44 189.0
47 TraesCS5B01G053600 chr4B 78.873 284 53 7 33 313 489531975 489532254 5.990000e-43 185.0
48 TraesCS5B01G053600 chr4B 89.381 113 10 2 3155 3267 339479020 339478910 1.320000e-29 141.0
49 TraesCS5B01G053600 chr4B 93.182 44 2 1 2935 2977 212374839 212374796 2.930000e-06 63.9
50 TraesCS5B01G053600 chr2A 84.324 185 24 5 697 878 632542806 632542988 3.610000e-40 176.0
51 TraesCS5B01G053600 chr3D 91.667 108 8 1 3155 3262 154304617 154304511 7.860000e-32 148.0
52 TraesCS5B01G053600 chrUn 92.233 103 8 0 3155 3257 93156433 93156331 2.830000e-31 147.0
53 TraesCS5B01G053600 chr6B 91.509 106 9 0 3152 3257 234690593 234690698 2.830000e-31 147.0
54 TraesCS5B01G053600 chr6B 82.677 127 14 6 2274 2396 635078384 635078506 4.800000e-19 106.0
55 TraesCS5B01G053600 chr6B 97.368 38 0 1 2941 2977 681928337 681928374 2.930000e-06 63.9
56 TraesCS5B01G053600 chr6A 91.509 106 9 0 3155 3260 52314726 52314621 2.830000e-31 147.0
57 TraesCS5B01G053600 chr6A 91.509 106 9 0 3152 3257 572398777 572398882 2.830000e-31 147.0
58 TraesCS5B01G053600 chr6A 93.478 46 2 1 2933 2977 532662019 532661974 2.260000e-07 67.6
59 TraesCS5B01G053600 chr3B 90.566 106 10 0 3152 3257 368537742 368537847 1.320000e-29 141.0
60 TraesCS5B01G053600 chr5A 81.343 134 15 9 2266 2393 529182848 529182719 2.230000e-17 100.0
61 TraesCS5B01G053600 chr4A 80.597 134 16 9 2266 2393 395037575 395037446 1.040000e-15 95.3
62 TraesCS5B01G053600 chr4A 80.000 135 16 11 2273 2403 454120005 454119878 4.830000e-14 89.8
63 TraesCS5B01G053600 chr3A 93.182 44 2 1 2934 2976 701345866 701345909 2.930000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G053600 chr5B 58755532 58759046 3514 True 2922.000000 5214 100.000000 1 3515 2 chr5B.!!$R3 3514
1 TraesCS5B01G053600 chr7B 399802708 399803913 1205 True 1458.000000 1458 88.537000 1057 2275 1 chr7B.!!$R2 1218
2 TraesCS5B01G053600 chr7B 394864368 394865508 1140 False 1454.000000 1454 89.578000 1057 2215 1 chr7B.!!$F2 1158
3 TraesCS5B01G053600 chr7B 394912533 394913673 1140 False 1454.000000 1454 89.578000 1057 2215 1 chr7B.!!$F3 1158
4 TraesCS5B01G053600 chr7B 394825362 394831797 6435 False 997.333333 2470 96.732667 1008 2876 3 chr7B.!!$F5 1868
5 TraesCS5B01G053600 chr7B 394820071 394820795 724 False 322.000000 342 85.589000 1 1009 2 chr7B.!!$F4 1008
6 TraesCS5B01G053600 chr7D 395295696 395296735 1039 False 1389.000000 1389 90.711000 1164 2215 1 chr7D.!!$F1 1051
7 TraesCS5B01G053600 chr7D 395074479 395077658 3179 False 1288.500000 2257 89.179000 2 2254 2 chr7D.!!$F2 2252
8 TraesCS5B01G053600 chr7D 396443734 396446124 2390 True 932.000000 1483 85.949000 1057 2845 2 chr7D.!!$R1 1788
9 TraesCS5B01G053600 chr7A 448473293 448475329 2036 False 900.000000 1986 90.758333 1057 3515 3 chr7A.!!$F5 2458
10 TraesCS5B01G053600 chr7A 450091436 450095531 4095 True 769.500000 1439 92.968500 1057 3515 2 chr7A.!!$R4 2458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 2121 1.393196 CGATTCACACGCACAATGCTA 59.607 47.619 0.00 0.0 42.25 3.49 F
1244 3207 0.247460 CCAGGACAAGCTGATCGTCA 59.753 55.000 7.79 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 4000 1.661821 GCCGACGATAGCTTGCGAT 60.662 57.895 13.80 0.0 42.67 4.58 R
3236 9790 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.0 44.66 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.227982 TGGGGATGAGTCAAGATTTCATCA 59.772 41.667 19.79 6.59 45.65 3.07
47 48 3.314307 TTCCGAGGAGTCACATAGGAT 57.686 47.619 0.00 0.00 34.45 3.24
96 97 3.558746 GCAGGCCTATGAGCTATTGTCAT 60.559 47.826 3.98 0.00 38.26 3.06
159 160 3.348647 TGTTGACCCCACATGTCATAG 57.651 47.619 0.00 0.00 41.99 2.23
205 206 7.040409 GCTTTTTCCGGATATCCATTGAGTTAT 60.040 37.037 21.70 0.00 35.14 1.89
219 220 5.581126 TTGAGTTATCATGGGTGCAATTC 57.419 39.130 0.00 0.00 34.73 2.17
220 221 4.858850 TGAGTTATCATGGGTGCAATTCT 58.141 39.130 0.00 0.00 0.00 2.40
236 237 7.962964 TGCAATTCTATACCTATGCACTAAC 57.037 36.000 0.00 0.00 38.73 2.34
238 239 6.090898 GCAATTCTATACCTATGCACTAACCG 59.909 42.308 0.00 0.00 34.10 4.44
272 276 5.743636 GGTATGAATACCCATTACCCGTA 57.256 43.478 8.12 0.00 45.62 4.02
281 285 4.516323 ACCCATTACCCGTATGTACAAAC 58.484 43.478 0.00 0.00 0.00 2.93
721 725 7.786178 TCTTTTTAGGAATACCATCATGACG 57.214 36.000 0.00 0.00 38.94 4.35
722 726 6.765989 TCTTTTTAGGAATACCATCATGACGG 59.234 38.462 6.20 6.20 38.94 4.79
724 728 2.408565 AGGAATACCATCATGACGGGT 58.591 47.619 21.02 21.02 38.94 5.28
744 748 9.285770 GACGGGTTTTATTTCATCTCAAATAAC 57.714 33.333 0.00 0.00 37.75 1.89
747 751 8.248253 GGGTTTTATTTCATCTCAAATAACGGT 58.752 33.333 0.00 0.00 37.75 4.83
767 771 7.346751 ACGGTAAATCATCCAAAATAATGCT 57.653 32.000 0.00 0.00 0.00 3.79
769 773 8.349983 ACGGTAAATCATCCAAAATAATGCTAC 58.650 33.333 0.00 0.00 0.00 3.58
770 774 8.567948 CGGTAAATCATCCAAAATAATGCTACT 58.432 33.333 0.00 0.00 0.00 2.57
771 775 9.683069 GGTAAATCATCCAAAATAATGCTACTG 57.317 33.333 0.00 0.00 0.00 2.74
861 2109 1.692148 GCCACGCGATTCGATTCACA 61.692 55.000 15.93 0.00 41.67 3.58
873 2121 1.393196 CGATTCACACGCACAATGCTA 59.607 47.619 0.00 0.00 42.25 3.49
1013 2266 6.365247 GGACGTGTGCATACATAAATACTAGG 59.635 42.308 14.34 0.00 39.39 3.02
1066 3029 1.423395 CTCAACTCGTTGCCTCACTC 58.577 55.000 4.95 0.00 40.24 3.51
1244 3207 0.247460 CCAGGACAAGCTGATCGTCA 59.753 55.000 7.79 0.00 0.00 4.35
1734 3700 4.129148 GGAAGGGCCGGGCAAGAT 62.129 66.667 30.95 12.17 0.00 2.40
1795 3761 4.731612 CTCCTGCTGCACTCGCGT 62.732 66.667 5.77 0.00 42.97 6.01
1855 3821 0.759436 TAATGGCCGACCTCCTCTCC 60.759 60.000 0.00 0.00 36.63 3.71
2034 4000 0.821711 CTCCGGCACAAGTTTCCCAA 60.822 55.000 0.00 0.00 0.00 4.12
2215 4181 4.391523 GGAGTCGTACCGGAGATATAGAAC 59.608 50.000 9.46 0.00 0.00 3.01
2301 4276 4.584743 CCTCCTTCCCAAAATATAAGGCAC 59.415 45.833 0.00 0.00 38.70 5.01
2312 4287 7.489113 CCAAAATATAAGGCACTGTTGACATTC 59.511 37.037 0.00 0.00 40.86 2.67
2313 4288 7.944729 AAATATAAGGCACTGTTGACATTCT 57.055 32.000 0.00 0.00 40.86 2.40
2314 4289 7.559590 AATATAAGGCACTGTTGACATTCTC 57.440 36.000 0.00 0.00 40.86 2.87
2423 4398 6.312399 TGTACATGAATGTTGTCTGAAACC 57.688 37.500 0.00 0.00 41.97 3.27
2479 4456 4.947420 GTCAGACGACAAACATAGCTTTC 58.053 43.478 0.00 0.00 42.13 2.62
2484 4461 5.408604 AGACGACAAACATAGCTTTCGAAAT 59.591 36.000 11.70 0.00 0.00 2.17
2512 4489 2.040012 AGATGCTAGGCCTCCATCATTG 59.960 50.000 31.89 10.29 38.21 2.82
2845 9399 3.636300 TGCAGCTTATGTTTCCTGTTTGT 59.364 39.130 0.00 0.00 0.00 2.83
2853 9407 4.609691 TGTTTCCTGTTTGTCGAGAAAC 57.390 40.909 26.39 26.39 44.09 2.78
2876 9430 3.181458 TGTTCCTTTTGCGAGACCTAGTT 60.181 43.478 0.00 0.00 0.00 2.24
2877 9431 3.040147 TCCTTTTGCGAGACCTAGTTG 57.960 47.619 0.00 0.00 0.00 3.16
2878 9432 2.076863 CCTTTTGCGAGACCTAGTTGG 58.923 52.381 0.00 0.00 42.93 3.77
2879 9433 1.464997 CTTTTGCGAGACCTAGTTGGC 59.535 52.381 0.00 0.00 40.22 4.52
2880 9434 0.685097 TTTGCGAGACCTAGTTGGCT 59.315 50.000 0.00 0.00 40.22 4.75
2881 9435 1.552578 TTGCGAGACCTAGTTGGCTA 58.447 50.000 0.00 0.00 40.22 3.93
2882 9436 1.103803 TGCGAGACCTAGTTGGCTAG 58.896 55.000 0.00 0.00 43.26 3.42
2912 9466 1.239347 GACCTGGAACTGCCTGAAAC 58.761 55.000 0.00 0.00 37.79 2.78
2920 9474 0.395586 ACTGCCTGAAACAAGTGCCA 60.396 50.000 0.00 0.00 0.00 4.92
2926 9480 2.480073 CCTGAAACAAGTGCCACTGTTG 60.480 50.000 0.00 0.00 0.00 3.33
2945 9499 6.835488 ACTGTTGGCATGATAAATTAGGATGT 59.165 34.615 0.00 0.00 0.00 3.06
2946 9500 7.998383 ACTGTTGGCATGATAAATTAGGATGTA 59.002 33.333 0.00 0.00 0.00 2.29
2947 9501 8.165239 TGTTGGCATGATAAATTAGGATGTAC 57.835 34.615 0.00 0.00 0.00 2.90
2948 9502 7.998383 TGTTGGCATGATAAATTAGGATGTACT 59.002 33.333 0.00 0.00 0.00 2.73
2949 9503 8.507249 GTTGGCATGATAAATTAGGATGTACTC 58.493 37.037 0.00 0.00 0.00 2.59
2950 9504 7.168219 TGGCATGATAAATTAGGATGTACTCC 58.832 38.462 0.00 0.00 45.33 3.85
2951 9505 6.599638 GGCATGATAAATTAGGATGTACTCCC 59.400 42.308 0.00 2.60 46.27 4.30
2952 9506 7.398024 GCATGATAAATTAGGATGTACTCCCT 58.602 38.462 0.00 10.65 46.27 4.20
2953 9507 7.550906 GCATGATAAATTAGGATGTACTCCCTC 59.449 40.741 9.41 0.00 46.27 4.30
2954 9508 7.554959 TGATAAATTAGGATGTACTCCCTCC 57.445 40.000 9.41 3.69 46.27 4.30
2955 9509 4.957684 AAATTAGGATGTACTCCCTCCG 57.042 45.455 9.41 0.00 46.27 4.63
2956 9510 3.614568 ATTAGGATGTACTCCCTCCGT 57.385 47.619 9.41 0.00 46.27 4.69
2957 9511 3.393426 TTAGGATGTACTCCCTCCGTT 57.607 47.619 9.41 0.00 46.27 4.44
2958 9512 1.777941 AGGATGTACTCCCTCCGTTC 58.222 55.000 7.50 0.00 46.27 3.95
2959 9513 0.384669 GGATGTACTCCCTCCGTTCG 59.615 60.000 0.00 0.00 38.19 3.95
2960 9514 1.386533 GATGTACTCCCTCCGTTCGA 58.613 55.000 0.00 0.00 0.00 3.71
2961 9515 1.747355 GATGTACTCCCTCCGTTCGAA 59.253 52.381 0.00 0.00 0.00 3.71
2962 9516 1.619654 TGTACTCCCTCCGTTCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
2963 9517 1.962807 TGTACTCCCTCCGTTCGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
2964 9518 2.564062 TGTACTCCCTCCGTTCGAAAAT 59.436 45.455 0.00 0.00 0.00 1.82
2965 9519 3.763360 TGTACTCCCTCCGTTCGAAAATA 59.237 43.478 0.00 0.00 0.00 1.40
2966 9520 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
2967 9521 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
2968 9522 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
2969 9523 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2970 9524 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2971 9525 3.370061 CCCTCCGTTCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2972 9526 3.991773 CCTCCGTTCGAAAATACTTGTCA 59.008 43.478 0.00 0.00 0.00 3.58
2973 9527 4.630069 CCTCCGTTCGAAAATACTTGTCAT 59.370 41.667 0.00 0.00 0.00 3.06
2974 9528 5.220416 CCTCCGTTCGAAAATACTTGTCATC 60.220 44.000 0.00 0.00 0.00 2.92
2975 9529 5.231702 TCCGTTCGAAAATACTTGTCATCA 58.768 37.500 0.00 0.00 0.00 3.07
2976 9530 5.697178 TCCGTTCGAAAATACTTGTCATCAA 59.303 36.000 0.00 0.00 0.00 2.57
2977 9531 5.788531 CCGTTCGAAAATACTTGTCATCAAC 59.211 40.000 0.00 0.00 0.00 3.18
2978 9532 6.359545 CGTTCGAAAATACTTGTCATCAACA 58.640 36.000 0.00 0.00 35.59 3.33
2979 9533 6.516355 CGTTCGAAAATACTTGTCATCAACAG 59.484 38.462 0.00 0.00 39.58 3.16
2980 9534 6.480524 TCGAAAATACTTGTCATCAACAGG 57.519 37.500 0.00 0.00 39.58 4.00
2981 9535 5.411361 TCGAAAATACTTGTCATCAACAGGG 59.589 40.000 0.00 0.00 39.21 4.45
2982 9536 5.391950 CGAAAATACTTGTCATCAACAGGGG 60.392 44.000 0.00 0.00 39.21 4.79
2983 9537 2.489938 TACTTGTCATCAACAGGGGC 57.510 50.000 0.00 0.00 39.21 5.80
2984 9538 0.606401 ACTTGTCATCAACAGGGGCG 60.606 55.000 0.00 0.00 39.21 6.13
2985 9539 0.321564 CTTGTCATCAACAGGGGCGA 60.322 55.000 0.00 0.00 39.58 5.54
2986 9540 0.109532 TTGTCATCAACAGGGGCGAA 59.890 50.000 0.00 0.00 39.58 4.70
2987 9541 0.605319 TGTCATCAACAGGGGCGAAC 60.605 55.000 0.00 0.00 32.81 3.95
2988 9542 1.002624 TCATCAACAGGGGCGAACC 60.003 57.895 0.00 0.00 39.11 3.62
3006 9560 2.347490 CACGTTCAGGGGAGTGGG 59.653 66.667 0.00 0.00 0.00 4.61
3007 9561 2.928396 ACGTTCAGGGGAGTGGGG 60.928 66.667 0.00 0.00 0.00 4.96
3008 9562 3.717294 CGTTCAGGGGAGTGGGGG 61.717 72.222 0.00 0.00 0.00 5.40
3009 9563 4.048470 GTTCAGGGGAGTGGGGGC 62.048 72.222 0.00 0.00 0.00 5.80
3012 9566 4.431524 CAGGGGAGTGGGGGCCTA 62.432 72.222 0.84 0.00 0.00 3.93
3013 9567 4.109656 AGGGGAGTGGGGGCCTAG 62.110 72.222 0.84 0.00 0.00 3.02
3015 9569 4.103928 GGGAGTGGGGGCCTAGGA 62.104 72.222 14.75 0.00 0.00 2.94
3016 9570 2.768769 GGAGTGGGGGCCTAGGAC 60.769 72.222 14.75 10.52 0.00 3.85
3017 9571 2.768769 GAGTGGGGGCCTAGGACC 60.769 72.222 27.59 27.59 44.33 4.46
3025 9579 3.081409 GCCTAGGACCCCGCTCAA 61.081 66.667 14.75 0.00 0.00 3.02
3026 9580 2.666098 GCCTAGGACCCCGCTCAAA 61.666 63.158 14.75 0.00 0.00 2.69
3027 9581 1.221021 CCTAGGACCCCGCTCAAAC 59.779 63.158 1.05 0.00 0.00 2.93
3028 9582 1.265454 CCTAGGACCCCGCTCAAACT 61.265 60.000 1.05 0.00 0.00 2.66
3029 9583 0.613777 CTAGGACCCCGCTCAAACTT 59.386 55.000 0.00 0.00 0.00 2.66
3030 9584 1.003233 CTAGGACCCCGCTCAAACTTT 59.997 52.381 0.00 0.00 0.00 2.66
3031 9585 0.537371 AGGACCCCGCTCAAACTTTG 60.537 55.000 0.00 0.00 0.00 2.77
3032 9586 0.536460 GGACCCCGCTCAAACTTTGA 60.536 55.000 4.16 4.16 38.17 2.69
3033 9587 1.314730 GACCCCGCTCAAACTTTGAA 58.685 50.000 5.72 0.00 39.58 2.69
3034 9588 1.266989 GACCCCGCTCAAACTTTGAAG 59.733 52.381 5.72 3.36 39.58 3.02
3035 9589 1.318576 CCCCGCTCAAACTTTGAAGT 58.681 50.000 5.72 0.00 39.58 3.01
3072 9626 7.951530 TCTCTGAAATTTGAGAAAAATTGCC 57.048 32.000 8.73 0.00 36.52 4.52
3073 9627 7.499292 TCTCTGAAATTTGAGAAAAATTGCCA 58.501 30.769 8.73 0.00 36.52 4.92
3074 9628 7.986320 TCTCTGAAATTTGAGAAAAATTGCCAA 59.014 29.630 8.73 0.00 36.52 4.52
3075 9629 8.503458 TCTGAAATTTGAGAAAAATTGCCAAA 57.497 26.923 4.75 0.00 30.94 3.28
3076 9630 8.954350 TCTGAAATTTGAGAAAAATTGCCAAAA 58.046 25.926 4.75 0.00 31.63 2.44
3077 9631 8.908172 TGAAATTTGAGAAAAATTGCCAAAAC 57.092 26.923 0.00 0.00 31.63 2.43
3078 9632 8.738106 TGAAATTTGAGAAAAATTGCCAAAACT 58.262 25.926 0.00 0.00 31.63 2.66
3101 9655 7.645402 ACTATTTAAGTTGGTGTAAAGTGTGC 58.355 34.615 0.00 0.00 33.35 4.57
3102 9656 4.904253 TTAAGTTGGTGTAAAGTGTGCC 57.096 40.909 0.00 0.00 0.00 5.01
3103 9657 1.687563 AGTTGGTGTAAAGTGTGCCC 58.312 50.000 0.00 0.00 0.00 5.36
3104 9658 0.671796 GTTGGTGTAAAGTGTGCCCC 59.328 55.000 0.00 0.00 0.00 5.80
3105 9659 0.468400 TTGGTGTAAAGTGTGCCCCC 60.468 55.000 0.00 0.00 0.00 5.40
3106 9660 1.151908 GGTGTAAAGTGTGCCCCCA 59.848 57.895 0.00 0.00 0.00 4.96
3107 9661 1.176619 GGTGTAAAGTGTGCCCCCAC 61.177 60.000 0.00 0.00 42.40 4.61
3109 9663 0.109723 TGTAAAGTGTGCCCCCACTC 59.890 55.000 1.80 0.00 44.74 3.51
3110 9664 0.608308 GTAAAGTGTGCCCCCACTCC 60.608 60.000 1.80 0.00 44.74 3.85
3111 9665 0.770557 TAAAGTGTGCCCCCACTCCT 60.771 55.000 1.80 0.00 44.74 3.69
3112 9666 0.770557 AAAGTGTGCCCCCACTCCTA 60.771 55.000 1.80 0.00 44.74 2.94
3113 9667 0.550147 AAGTGTGCCCCCACTCCTAT 60.550 55.000 1.80 0.00 44.74 2.57
3114 9668 0.341961 AGTGTGCCCCCACTCCTATA 59.658 55.000 0.00 0.00 41.84 1.31
3115 9669 0.759346 GTGTGCCCCCACTCCTATAG 59.241 60.000 0.00 0.00 42.54 1.31
3116 9670 0.341961 TGTGCCCCCACTCCTATAGT 59.658 55.000 0.00 0.00 42.54 2.12
3117 9671 1.274184 TGTGCCCCCACTCCTATAGTT 60.274 52.381 0.00 0.00 42.54 2.24
3118 9672 1.844497 GTGCCCCCACTCCTATAGTTT 59.156 52.381 0.00 0.00 38.93 2.66
3119 9673 1.843851 TGCCCCCACTCCTATAGTTTG 59.156 52.381 0.00 0.00 35.76 2.93
3120 9674 1.477014 GCCCCCACTCCTATAGTTTGC 60.477 57.143 0.00 0.00 35.76 3.68
3121 9675 1.143073 CCCCCACTCCTATAGTTTGCC 59.857 57.143 0.00 0.00 35.76 4.52
3122 9676 1.143073 CCCCACTCCTATAGTTTGCCC 59.857 57.143 0.00 0.00 35.76 5.36
3123 9677 1.143073 CCCACTCCTATAGTTTGCCCC 59.857 57.143 0.00 0.00 35.76 5.80
3124 9678 1.143073 CCACTCCTATAGTTTGCCCCC 59.857 57.143 0.00 0.00 35.76 5.40
3125 9679 1.843851 CACTCCTATAGTTTGCCCCCA 59.156 52.381 0.00 0.00 35.76 4.96
3126 9680 1.844497 ACTCCTATAGTTTGCCCCCAC 59.156 52.381 0.00 0.00 33.35 4.61
3127 9681 2.127708 CTCCTATAGTTTGCCCCCACT 58.872 52.381 0.00 0.00 0.00 4.00
3128 9682 2.509964 CTCCTATAGTTTGCCCCCACTT 59.490 50.000 0.00 0.00 0.00 3.16
3129 9683 3.714798 CTCCTATAGTTTGCCCCCACTTA 59.285 47.826 0.00 0.00 0.00 2.24
3130 9684 3.714798 TCCTATAGTTTGCCCCCACTTAG 59.285 47.826 0.00 0.00 0.00 2.18
3131 9685 3.714798 CCTATAGTTTGCCCCCACTTAGA 59.285 47.826 0.00 0.00 0.00 2.10
3132 9686 4.165372 CCTATAGTTTGCCCCCACTTAGAA 59.835 45.833 0.00 0.00 0.00 2.10
3133 9687 4.881157 ATAGTTTGCCCCCACTTAGAAT 57.119 40.909 0.00 0.00 0.00 2.40
3134 9688 5.987019 ATAGTTTGCCCCCACTTAGAATA 57.013 39.130 0.00 0.00 0.00 1.75
3135 9689 4.236527 AGTTTGCCCCCACTTAGAATAG 57.763 45.455 0.00 0.00 0.00 1.73
3136 9690 3.591977 AGTTTGCCCCCACTTAGAATAGT 59.408 43.478 0.00 0.00 0.00 2.12
3137 9691 4.044191 AGTTTGCCCCCACTTAGAATAGTT 59.956 41.667 0.00 0.00 0.00 2.24
3138 9692 4.668138 TTGCCCCCACTTAGAATAGTTT 57.332 40.909 0.00 0.00 0.00 2.66
3139 9693 4.230745 TGCCCCCACTTAGAATAGTTTC 57.769 45.455 0.00 0.00 0.00 2.78
3140 9694 3.850173 TGCCCCCACTTAGAATAGTTTCT 59.150 43.478 0.00 0.00 44.44 2.52
3141 9695 5.034200 TGCCCCCACTTAGAATAGTTTCTA 58.966 41.667 0.00 0.00 42.29 2.10
3142 9696 5.130477 TGCCCCCACTTAGAATAGTTTCTAG 59.870 44.000 0.00 0.00 43.53 2.43
3143 9697 5.454897 GCCCCCACTTAGAATAGTTTCTAGG 60.455 48.000 4.02 4.02 43.53 3.02
3145 9699 6.183360 CCCCCACTTAGAATAGTTTCTAGGTC 60.183 46.154 7.34 0.00 46.20 3.85
3146 9700 6.183360 CCCCACTTAGAATAGTTTCTAGGTCC 60.183 46.154 7.34 0.00 46.20 4.46
3147 9701 6.461231 CCCACTTAGAATAGTTTCTAGGTCCG 60.461 46.154 7.34 2.74 46.20 4.79
3148 9702 5.978322 CACTTAGAATAGTTTCTAGGTCCGC 59.022 44.000 7.34 0.00 46.20 5.54
3149 9703 5.068855 ACTTAGAATAGTTTCTAGGTCCGCC 59.931 44.000 5.09 0.00 46.20 6.13
3150 9704 2.699321 AGAATAGTTTCTAGGTCCGCCC 59.301 50.000 0.00 0.00 40.47 6.13
3151 9705 1.421480 ATAGTTTCTAGGTCCGCCCC 58.579 55.000 0.00 0.00 34.57 5.80
3152 9706 0.337428 TAGTTTCTAGGTCCGCCCCT 59.663 55.000 0.00 0.00 38.70 4.79
3153 9707 1.221021 GTTTCTAGGTCCGCCCCTG 59.779 63.158 1.64 0.00 35.97 4.45
3154 9708 1.993391 TTTCTAGGTCCGCCCCTGG 60.993 63.158 1.64 0.00 35.97 4.45
3155 9709 2.758852 TTTCTAGGTCCGCCCCTGGT 62.759 60.000 1.64 0.00 35.97 4.00
3156 9710 3.155167 CTAGGTCCGCCCCTGGTC 61.155 72.222 1.64 0.00 35.97 4.02
3157 9711 3.976490 CTAGGTCCGCCCCTGGTCA 62.976 68.421 1.64 0.00 35.97 4.02
3158 9712 3.326385 TAGGTCCGCCCCTGGTCAT 62.326 63.158 1.64 0.00 35.97 3.06
3159 9713 4.176752 GGTCCGCCCCTGGTCATC 62.177 72.222 0.00 0.00 0.00 2.92
3160 9714 3.399181 GTCCGCCCCTGGTCATCA 61.399 66.667 0.00 0.00 0.00 3.07
3161 9715 2.609299 TCCGCCCCTGGTCATCAA 60.609 61.111 0.00 0.00 0.00 2.57
3162 9716 2.227757 TCCGCCCCTGGTCATCAAA 61.228 57.895 0.00 0.00 0.00 2.69
3163 9717 1.304052 CCGCCCCTGGTCATCAAAA 60.304 57.895 0.00 0.00 0.00 2.44
3164 9718 0.684153 CCGCCCCTGGTCATCAAAAT 60.684 55.000 0.00 0.00 0.00 1.82
3165 9719 0.457035 CGCCCCTGGTCATCAAAATG 59.543 55.000 0.00 0.00 0.00 2.32
3166 9720 0.826062 GCCCCTGGTCATCAAAATGG 59.174 55.000 0.00 0.00 33.42 3.16
3167 9721 1.619432 GCCCCTGGTCATCAAAATGGA 60.619 52.381 0.00 0.00 33.42 3.41
3168 9722 2.956385 GCCCCTGGTCATCAAAATGGAT 60.956 50.000 0.00 0.00 33.42 3.41
3169 9723 3.691020 GCCCCTGGTCATCAAAATGGATA 60.691 47.826 0.00 0.00 33.42 2.59
3170 9724 4.545678 CCCCTGGTCATCAAAATGGATAA 58.454 43.478 0.00 0.00 33.42 1.75
3171 9725 4.961730 CCCCTGGTCATCAAAATGGATAAA 59.038 41.667 0.00 0.00 33.42 1.40
3172 9726 5.424895 CCCCTGGTCATCAAAATGGATAAAA 59.575 40.000 0.00 0.00 33.42 1.52
3173 9727 6.070309 CCCCTGGTCATCAAAATGGATAAAAA 60.070 38.462 0.00 0.00 33.42 1.94
3174 9728 6.818142 CCCTGGTCATCAAAATGGATAAAAAC 59.182 38.462 0.00 0.00 33.42 2.43
3175 9729 7.385267 CCTGGTCATCAAAATGGATAAAAACA 58.615 34.615 0.00 0.00 33.42 2.83
3176 9730 8.042515 CCTGGTCATCAAAATGGATAAAAACAT 58.957 33.333 0.00 0.00 33.42 2.71
3213 9767 9.574516 AACAAAAATACATCTAGATACATCCCC 57.425 33.333 4.54 0.00 0.00 4.81
3214 9768 8.949421 ACAAAAATACATCTAGATACATCCCCT 58.051 33.333 4.54 0.00 0.00 4.79
3215 9769 9.799106 CAAAAATACATCTAGATACATCCCCTT 57.201 33.333 4.54 0.00 0.00 3.95
3216 9770 9.799106 AAAAATACATCTAGATACATCCCCTTG 57.201 33.333 4.54 0.00 0.00 3.61
3217 9771 8.511748 AAATACATCTAGATACATCCCCTTGT 57.488 34.615 4.54 0.00 0.00 3.16
3218 9772 9.615660 AAATACATCTAGATACATCCCCTTGTA 57.384 33.333 4.54 1.59 36.57 2.41
3219 9773 9.790297 AATACATCTAGATACATCCCCTTGTAT 57.210 33.333 4.54 3.93 43.70 2.29
3227 9781 7.219484 GATACATCCCCTTGTATCCATTTTG 57.781 40.000 11.70 0.00 46.72 2.44
3228 9782 5.205517 ACATCCCCTTGTATCCATTTTGA 57.794 39.130 0.00 0.00 0.00 2.69
3229 9783 5.780731 ACATCCCCTTGTATCCATTTTGAT 58.219 37.500 0.00 0.00 0.00 2.57
3230 9784 5.599656 ACATCCCCTTGTATCCATTTTGATG 59.400 40.000 0.00 0.00 33.80 3.07
3231 9785 5.464588 TCCCCTTGTATCCATTTTGATGA 57.535 39.130 0.00 0.00 0.00 2.92
3232 9786 5.200483 TCCCCTTGTATCCATTTTGATGAC 58.800 41.667 0.00 0.00 0.00 3.06
3233 9787 4.955450 CCCCTTGTATCCATTTTGATGACA 59.045 41.667 0.00 0.00 0.00 3.58
3234 9788 5.421693 CCCCTTGTATCCATTTTGATGACAA 59.578 40.000 0.00 0.00 0.00 3.18
3235 9789 6.070881 CCCCTTGTATCCATTTTGATGACAAA 60.071 38.462 0.00 0.00 43.10 2.83
3236 9790 7.364939 CCCCTTGTATCCATTTTGATGACAAAT 60.365 37.037 0.00 0.00 43.99 2.32
3237 9791 8.694540 CCCTTGTATCCATTTTGATGACAAATA 58.305 33.333 0.00 0.00 43.99 1.40
3243 9797 8.876275 ATCCATTTTGATGACAAATATTTCCG 57.124 30.769 0.00 0.00 43.99 4.30
3244 9798 7.264221 TCCATTTTGATGACAAATATTTCCGG 58.736 34.615 0.00 0.00 43.99 5.14
3245 9799 7.123397 TCCATTTTGATGACAAATATTTCCGGA 59.877 33.333 0.00 0.00 43.99 5.14
3246 9800 7.222611 CCATTTTGATGACAAATATTTCCGGAC 59.777 37.037 1.83 0.00 43.99 4.79
3247 9801 5.478233 TTGATGACAAATATTTCCGGACG 57.522 39.130 1.83 0.00 32.73 4.79
3248 9802 3.874543 TGATGACAAATATTTCCGGACGG 59.125 43.478 1.83 3.96 0.00 4.79
3249 9803 3.613494 TGACAAATATTTCCGGACGGA 57.387 42.857 1.83 9.76 43.52 4.69
3250 9804 3.527533 TGACAAATATTTCCGGACGGAG 58.472 45.455 13.64 3.15 46.06 4.63
3251 9805 2.870411 GACAAATATTTCCGGACGGAGG 59.130 50.000 13.64 0.00 46.06 4.30
3252 9806 2.218603 CAAATATTTCCGGACGGAGGG 58.781 52.381 13.64 0.00 46.06 4.30
3253 9807 1.797320 AATATTTCCGGACGGAGGGA 58.203 50.000 13.64 4.95 46.06 4.20
3254 9808 1.339097 ATATTTCCGGACGGAGGGAG 58.661 55.000 13.64 0.00 46.06 4.30
3255 9809 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3256 9810 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3259 9813 0.982852 TCCGGACGGAGGGAGTAGTA 60.983 60.000 9.76 0.00 39.76 1.82
3307 9861 8.453320 TCATCATGTAAAGAAAGCTACACATTG 58.547 33.333 0.00 0.00 30.49 2.82
3314 9868 6.449635 AAGAAAGCTACACATTGTTCACAA 57.550 33.333 0.00 0.00 40.51 3.33
3390 9944 8.491958 GGTGTTTCTCCTTTCCCTCTATATTTA 58.508 37.037 0.00 0.00 0.00 1.40
3412 9966 9.722056 ATTTAGCGATTTTGATCACTGTATTTC 57.278 29.630 0.00 0.00 0.00 2.17
3415 9969 7.047891 AGCGATTTTGATCACTGTATTTCCTA 58.952 34.615 0.00 0.00 0.00 2.94
3422 9976 5.491078 TGATCACTGTATTTCCTACCCCTTT 59.509 40.000 0.00 0.00 0.00 3.11
3426 9980 7.757611 TCACTGTATTTCCTACCCCTTTTAAA 58.242 34.615 0.00 0.00 0.00 1.52
3431 9985 9.027202 TGTATTTCCTACCCCTTTTAAACATTC 57.973 33.333 0.00 0.00 0.00 2.67
3435 9989 8.555896 TTCCTACCCCTTTTAAACATTCTTTT 57.444 30.769 0.00 0.00 0.00 2.27
3436 9990 8.555896 TCCTACCCCTTTTAAACATTCTTTTT 57.444 30.769 0.00 0.00 0.00 1.94
3437 9991 8.425703 TCCTACCCCTTTTAAACATTCTTTTTG 58.574 33.333 0.00 0.00 0.00 2.44
3438 9992 6.935741 ACCCCTTTTAAACATTCTTTTTGC 57.064 33.333 0.00 0.00 0.00 3.68
3439 9993 6.418946 ACCCCTTTTAAACATTCTTTTTGCA 58.581 32.000 0.00 0.00 0.00 4.08
3440 9994 7.059788 ACCCCTTTTAAACATTCTTTTTGCAT 58.940 30.769 0.00 0.00 0.00 3.96
3465 10019 1.607148 CATCGATGCCATGTTCATGCT 59.393 47.619 13.37 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.314307 TCCTATGTGACTCCTCGGAAT 57.686 47.619 0.00 0.00 0.00 3.01
47 48 1.141254 CTACTCGCCTCTCCTCCTACA 59.859 57.143 0.00 0.00 0.00 2.74
187 188 5.819379 CCCATGATAACTCAATGGATATCCG 59.181 44.000 17.04 4.73 35.05 4.18
205 206 6.475504 CATAGGTATAGAATTGCACCCATGA 58.524 40.000 0.00 0.00 33.57 3.07
256 260 6.497624 TTGTACATACGGGTAATGGGTATT 57.502 37.500 0.00 0.00 0.00 1.89
695 699 8.840321 CGTCATGATGGTATTCCTAAAAAGAAT 58.160 33.333 7.06 0.00 37.67 2.40
696 700 7.282224 CCGTCATGATGGTATTCCTAAAAAGAA 59.718 37.037 23.76 0.00 32.81 2.52
697 701 6.765989 CCGTCATGATGGTATTCCTAAAAAGA 59.234 38.462 23.76 0.00 32.81 2.52
698 702 6.017109 CCCGTCATGATGGTATTCCTAAAAAG 60.017 42.308 28.32 8.14 35.70 2.27
699 703 5.825679 CCCGTCATGATGGTATTCCTAAAAA 59.174 40.000 28.32 0.00 35.70 1.94
700 704 5.104277 ACCCGTCATGATGGTATTCCTAAAA 60.104 40.000 28.32 0.00 35.70 1.52
701 705 4.410883 ACCCGTCATGATGGTATTCCTAAA 59.589 41.667 28.32 0.00 35.70 1.85
702 706 3.971305 ACCCGTCATGATGGTATTCCTAA 59.029 43.478 28.32 0.00 35.70 2.69
703 707 3.583228 ACCCGTCATGATGGTATTCCTA 58.417 45.455 28.32 0.00 35.70 2.94
704 708 2.408565 ACCCGTCATGATGGTATTCCT 58.591 47.619 28.32 4.82 35.70 3.36
705 709 2.930826 ACCCGTCATGATGGTATTCC 57.069 50.000 28.32 0.00 35.70 3.01
706 710 6.877611 ATAAAACCCGTCATGATGGTATTC 57.122 37.500 28.32 0.29 35.70 1.75
710 714 5.013547 TGAAATAAAACCCGTCATGATGGT 58.986 37.500 28.32 20.54 35.70 3.55
712 716 7.031226 AGATGAAATAAAACCCGTCATGATG 57.969 36.000 8.03 8.03 0.00 3.07
721 725 8.248253 ACCGTTATTTGAGATGAAATAAAACCC 58.752 33.333 0.00 0.00 38.75 4.11
744 748 8.567948 AGTAGCATTATTTTGGATGATTTACCG 58.432 33.333 0.00 0.00 0.00 4.02
755 759 9.956720 CCTTCTTTATCAGTAGCATTATTTTGG 57.043 33.333 0.00 0.00 0.00 3.28
767 771 7.400339 ACAGACAATCCTCCTTCTTTATCAGTA 59.600 37.037 0.00 0.00 0.00 2.74
769 773 6.648192 ACAGACAATCCTCCTTCTTTATCAG 58.352 40.000 0.00 0.00 0.00 2.90
770 774 6.352222 GGACAGACAATCCTCCTTCTTTATCA 60.352 42.308 0.00 0.00 33.03 2.15
771 775 6.052360 GGACAGACAATCCTCCTTCTTTATC 58.948 44.000 0.00 0.00 33.03 1.75
772 776 5.488919 TGGACAGACAATCCTCCTTCTTTAT 59.511 40.000 0.00 0.00 37.13 1.40
773 777 4.844085 TGGACAGACAATCCTCCTTCTTTA 59.156 41.667 0.00 0.00 37.13 1.85
778 2025 2.338809 TGTGGACAGACAATCCTCCTT 58.661 47.619 0.00 0.00 37.13 3.36
889 2139 7.184067 ACCGATCTCTACTCCAACTAAAAAT 57.816 36.000 0.00 0.00 0.00 1.82
1013 2266 2.175236 GCTGCAAGGTAGCTGGTTC 58.825 57.895 0.00 0.00 38.14 3.62
1244 3207 2.437359 GCTGAGCCGCTTGATGGT 60.437 61.111 0.00 0.00 0.00 3.55
1436 3399 3.488090 GTAGCCGCGCAGGTTGAC 61.488 66.667 8.75 5.99 43.70 3.18
1674 3640 1.714460 CGATCTTGTAGATTACGCGGC 59.286 52.381 12.47 0.00 34.53 6.53
1718 3684 2.517166 GATCTTGCCCGGCCCTTC 60.517 66.667 7.03 0.00 0.00 3.46
1734 3700 2.866523 AATAGTCACCTCCGGCGGGA 62.867 60.000 27.98 12.72 41.08 5.14
1819 3785 2.055689 TTATGCATCCGAGCCCCCAG 62.056 60.000 0.19 0.00 0.00 4.45
1924 3890 2.609299 TTGATCCCCTCCGTGCCA 60.609 61.111 0.00 0.00 0.00 4.92
2034 4000 1.661821 GCCGACGATAGCTTGCGAT 60.662 57.895 13.80 0.00 42.67 4.58
2301 4276 6.630443 CGAAGACAAAAAGAGAATGTCAACAG 59.370 38.462 7.75 0.00 44.55 3.16
2457 4432 4.433022 CGAAAGCTATGTTTGTCGTCTGAC 60.433 45.833 0.00 0.00 45.71 3.51
2479 4456 4.260948 GGCCTAGCATCTTCTTTCATTTCG 60.261 45.833 0.00 0.00 0.00 3.46
2484 4461 2.171448 GGAGGCCTAGCATCTTCTTTCA 59.829 50.000 4.42 0.00 39.44 2.69
2580 5132 9.988815 AAAAATATAAAGCACACCATTGTACAA 57.011 25.926 11.41 11.41 33.30 2.41
2602 8271 8.695284 CAATAAGCAACTGTAAATACGCAAAAA 58.305 29.630 0.00 0.00 0.00 1.94
2845 9399 2.286833 CGCAAAAGGAACAGTTTCTCGA 59.713 45.455 0.00 0.00 31.71 4.04
2853 9407 1.884235 AGGTCTCGCAAAAGGAACAG 58.116 50.000 0.00 0.00 0.00 3.16
2876 9430 0.324943 GTCCCAGCAAGAACTAGCCA 59.675 55.000 0.00 0.00 0.00 4.75
2877 9431 0.393132 GGTCCCAGCAAGAACTAGCC 60.393 60.000 0.00 0.00 0.00 3.93
2878 9432 0.615850 AGGTCCCAGCAAGAACTAGC 59.384 55.000 0.00 0.00 26.48 3.42
2879 9433 1.065854 CCAGGTCCCAGCAAGAACTAG 60.066 57.143 0.00 0.00 27.63 2.57
2880 9434 0.984230 CCAGGTCCCAGCAAGAACTA 59.016 55.000 0.00 0.00 27.63 2.24
2881 9435 0.768221 TCCAGGTCCCAGCAAGAACT 60.768 55.000 0.00 0.00 0.00 3.01
2882 9436 0.110486 TTCCAGGTCCCAGCAAGAAC 59.890 55.000 0.00 0.00 0.00 3.01
2920 9474 6.835488 ACATCCTAATTTATCATGCCAACAGT 59.165 34.615 0.00 0.00 0.00 3.55
2926 9480 7.617041 GGAGTACATCCTAATTTATCATGCC 57.383 40.000 0.00 0.00 45.64 4.40
2945 9499 4.019174 AGTATTTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
2946 9500 2.830321 AGTATTTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
2947 9501 3.521947 AGTATTTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
2948 9502 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2949 9503 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2950 9504 3.991773 TGACAAGTATTTTCGAACGGAGG 59.008 43.478 0.00 0.00 0.00 4.30
2951 9505 5.347635 TGATGACAAGTATTTTCGAACGGAG 59.652 40.000 0.00 0.00 0.00 4.63
2952 9506 5.231702 TGATGACAAGTATTTTCGAACGGA 58.768 37.500 0.00 0.00 0.00 4.69
2953 9507 5.524511 TGATGACAAGTATTTTCGAACGG 57.475 39.130 0.00 0.00 0.00 4.44
2954 9508 6.359545 TGTTGATGACAAGTATTTTCGAACG 58.640 36.000 0.00 0.00 36.64 3.95
2955 9509 6.797033 CCTGTTGATGACAAGTATTTTCGAAC 59.203 38.462 0.00 0.00 37.93 3.95
2956 9510 6.072728 CCCTGTTGATGACAAGTATTTTCGAA 60.073 38.462 0.00 0.00 37.93 3.71
2957 9511 5.411361 CCCTGTTGATGACAAGTATTTTCGA 59.589 40.000 0.00 0.00 37.93 3.71
2958 9512 5.391950 CCCCTGTTGATGACAAGTATTTTCG 60.392 44.000 0.00 0.00 37.93 3.46
2959 9513 5.622233 GCCCCTGTTGATGACAAGTATTTTC 60.622 44.000 0.00 0.00 37.93 2.29
2960 9514 4.220602 GCCCCTGTTGATGACAAGTATTTT 59.779 41.667 0.00 0.00 37.93 1.82
2961 9515 3.763897 GCCCCTGTTGATGACAAGTATTT 59.236 43.478 0.00 0.00 37.93 1.40
2962 9516 3.356290 GCCCCTGTTGATGACAAGTATT 58.644 45.455 0.00 0.00 37.93 1.89
2963 9517 2.680805 CGCCCCTGTTGATGACAAGTAT 60.681 50.000 0.00 0.00 37.93 2.12
2964 9518 1.338674 CGCCCCTGTTGATGACAAGTA 60.339 52.381 0.00 0.00 37.93 2.24
2965 9519 0.606401 CGCCCCTGTTGATGACAAGT 60.606 55.000 0.00 0.00 37.93 3.16
2966 9520 0.321564 TCGCCCCTGTTGATGACAAG 60.322 55.000 0.00 0.00 37.93 3.16
2967 9521 0.109532 TTCGCCCCTGTTGATGACAA 59.890 50.000 0.00 0.00 37.93 3.18
2968 9522 0.605319 GTTCGCCCCTGTTGATGACA 60.605 55.000 0.00 0.00 36.65 3.58
2969 9523 1.305930 GGTTCGCCCCTGTTGATGAC 61.306 60.000 0.00 0.00 0.00 3.06
2970 9524 1.002624 GGTTCGCCCCTGTTGATGA 60.003 57.895 0.00 0.00 0.00 2.92
2971 9525 3.590824 GGTTCGCCCCTGTTGATG 58.409 61.111 0.00 0.00 0.00 3.07
2985 9539 1.768888 ACTCCCCTGAACGTGGGTT 60.769 57.895 8.44 0.00 43.09 4.11
2986 9540 2.122547 ACTCCCCTGAACGTGGGT 60.123 61.111 8.44 0.00 43.09 4.51
2987 9541 2.347490 CACTCCCCTGAACGTGGG 59.653 66.667 2.20 2.20 44.19 4.61
2988 9542 2.347490 CCACTCCCCTGAACGTGG 59.653 66.667 0.00 0.00 40.71 4.94
2989 9543 2.347490 CCCACTCCCCTGAACGTG 59.653 66.667 0.00 0.00 0.00 4.49
2990 9544 2.928396 CCCCACTCCCCTGAACGT 60.928 66.667 0.00 0.00 0.00 3.99
2991 9545 3.717294 CCCCCACTCCCCTGAACG 61.717 72.222 0.00 0.00 0.00 3.95
2992 9546 4.048470 GCCCCCACTCCCCTGAAC 62.048 72.222 0.00 0.00 0.00 3.18
2995 9549 4.431524 TAGGCCCCCACTCCCCTG 62.432 72.222 0.00 0.00 0.00 4.45
2996 9550 4.109656 CTAGGCCCCCACTCCCCT 62.110 72.222 0.00 0.00 0.00 4.79
2998 9552 4.103928 TCCTAGGCCCCCACTCCC 62.104 72.222 2.96 0.00 0.00 4.30
2999 9553 2.768769 GTCCTAGGCCCCCACTCC 60.769 72.222 2.96 0.00 0.00 3.85
3000 9554 2.768769 GGTCCTAGGCCCCCACTC 60.769 72.222 2.96 0.00 0.00 3.51
3001 9555 4.433194 GGGTCCTAGGCCCCCACT 62.433 72.222 17.92 0.00 40.26 4.00
3008 9562 2.666098 TTTGAGCGGGGTCCTAGGC 61.666 63.158 2.96 0.00 0.00 3.93
3009 9563 1.221021 GTTTGAGCGGGGTCCTAGG 59.779 63.158 0.82 0.82 0.00 3.02
3010 9564 0.613777 AAGTTTGAGCGGGGTCCTAG 59.386 55.000 0.00 0.00 0.00 3.02
3011 9565 1.061546 AAAGTTTGAGCGGGGTCCTA 58.938 50.000 0.00 0.00 0.00 2.94
3012 9566 0.537371 CAAAGTTTGAGCGGGGTCCT 60.537 55.000 10.19 0.00 0.00 3.85
3013 9567 0.536460 TCAAAGTTTGAGCGGGGTCC 60.536 55.000 14.35 0.00 34.08 4.46
3014 9568 1.266989 CTTCAAAGTTTGAGCGGGGTC 59.733 52.381 17.36 0.00 41.38 4.46
3015 9569 1.318576 CTTCAAAGTTTGAGCGGGGT 58.681 50.000 17.36 0.00 41.38 4.95
3016 9570 1.318576 ACTTCAAAGTTTGAGCGGGG 58.681 50.000 17.36 9.69 41.38 5.73
3047 9601 7.986320 TGGCAATTTTTCTCAAATTTCAGAGAA 59.014 29.630 14.01 14.01 46.09 2.87
3048 9602 7.499292 TGGCAATTTTTCTCAAATTTCAGAGA 58.501 30.769 4.53 4.53 39.01 3.10
3049 9603 7.718272 TGGCAATTTTTCTCAAATTTCAGAG 57.282 32.000 0.00 0.00 0.00 3.35
3050 9604 8.503458 TTTGGCAATTTTTCTCAAATTTCAGA 57.497 26.923 0.00 0.00 0.00 3.27
3051 9605 9.012448 GTTTTGGCAATTTTTCTCAAATTTCAG 57.988 29.630 0.00 0.00 0.00 3.02
3052 9606 8.738106 AGTTTTGGCAATTTTTCTCAAATTTCA 58.262 25.926 0.00 0.00 0.00 2.69
3064 9618 9.402320 ACCAACTTAAATAGTTTTGGCAATTTT 57.598 25.926 0.00 0.00 44.73 1.82
3065 9619 8.835439 CACCAACTTAAATAGTTTTGGCAATTT 58.165 29.630 0.00 0.52 44.73 1.82
3066 9620 7.990314 ACACCAACTTAAATAGTTTTGGCAATT 59.010 29.630 0.00 0.00 44.73 2.32
3067 9621 7.505258 ACACCAACTTAAATAGTTTTGGCAAT 58.495 30.769 0.00 0.00 44.73 3.56
3068 9622 6.879400 ACACCAACTTAAATAGTTTTGGCAA 58.121 32.000 0.00 0.00 44.73 4.52
3069 9623 6.472686 ACACCAACTTAAATAGTTTTGGCA 57.527 33.333 5.07 0.00 44.73 4.92
3070 9624 8.874744 TTTACACCAACTTAAATAGTTTTGGC 57.125 30.769 5.07 0.00 44.73 4.52
3076 9630 7.255346 GGCACACTTTACACCAACTTAAATAGT 60.255 37.037 0.00 0.00 39.32 2.12
3077 9631 7.081976 GGCACACTTTACACCAACTTAAATAG 58.918 38.462 0.00 0.00 0.00 1.73
3078 9632 6.016108 GGGCACACTTTACACCAACTTAAATA 60.016 38.462 0.00 0.00 0.00 1.40
3079 9633 5.221362 GGGCACACTTTACACCAACTTAAAT 60.221 40.000 0.00 0.00 0.00 1.40
3080 9634 4.098196 GGGCACACTTTACACCAACTTAAA 59.902 41.667 0.00 0.00 0.00 1.52
3081 9635 3.633065 GGGCACACTTTACACCAACTTAA 59.367 43.478 0.00 0.00 0.00 1.85
3082 9636 3.215975 GGGCACACTTTACACCAACTTA 58.784 45.455 0.00 0.00 0.00 2.24
3083 9637 2.028876 GGGCACACTTTACACCAACTT 58.971 47.619 0.00 0.00 0.00 2.66
3084 9638 1.687563 GGGCACACTTTACACCAACT 58.312 50.000 0.00 0.00 0.00 3.16
3085 9639 0.671796 GGGGCACACTTTACACCAAC 59.328 55.000 0.00 0.00 0.00 3.77
3086 9640 0.468400 GGGGGCACACTTTACACCAA 60.468 55.000 0.00 0.00 0.00 3.67
3087 9641 1.151908 GGGGGCACACTTTACACCA 59.848 57.895 0.00 0.00 0.00 4.17
3088 9642 1.151908 TGGGGGCACACTTTACACC 59.848 57.895 0.00 0.00 0.00 4.16
3089 9643 2.337361 GTGGGGGCACACTTTACAC 58.663 57.895 0.00 0.00 38.32 2.90
3090 9644 4.911901 GTGGGGGCACACTTTACA 57.088 55.556 0.00 0.00 38.32 2.41
3096 9650 0.759346 CTATAGGAGTGGGGGCACAC 59.241 60.000 3.67 3.67 41.63 3.82
3097 9651 0.341961 ACTATAGGAGTGGGGGCACA 59.658 55.000 4.43 0.00 36.87 4.57
3098 9652 1.508256 AACTATAGGAGTGGGGGCAC 58.492 55.000 4.43 0.00 38.87 5.01
3099 9653 1.843851 CAAACTATAGGAGTGGGGGCA 59.156 52.381 4.43 0.00 38.87 5.36
3100 9654 1.477014 GCAAACTATAGGAGTGGGGGC 60.477 57.143 4.43 0.00 38.87 5.80
3101 9655 1.143073 GGCAAACTATAGGAGTGGGGG 59.857 57.143 4.43 0.00 38.87 5.40
3102 9656 1.143073 GGGCAAACTATAGGAGTGGGG 59.857 57.143 4.43 0.00 38.87 4.96
3103 9657 1.143073 GGGGCAAACTATAGGAGTGGG 59.857 57.143 4.43 0.00 38.87 4.61
3104 9658 1.143073 GGGGGCAAACTATAGGAGTGG 59.857 57.143 4.43 0.00 38.87 4.00
3105 9659 1.843851 TGGGGGCAAACTATAGGAGTG 59.156 52.381 4.43 0.23 38.87 3.51
3106 9660 1.844497 GTGGGGGCAAACTATAGGAGT 59.156 52.381 4.43 0.00 41.56 3.85
3107 9661 2.127708 AGTGGGGGCAAACTATAGGAG 58.872 52.381 4.43 0.00 0.00 3.69
3108 9662 2.280308 AGTGGGGGCAAACTATAGGA 57.720 50.000 4.43 0.00 0.00 2.94
3109 9663 3.714798 TCTAAGTGGGGGCAAACTATAGG 59.285 47.826 4.43 0.00 0.00 2.57
3110 9664 5.367945 TTCTAAGTGGGGGCAAACTATAG 57.632 43.478 0.00 0.00 0.00 1.31
3111 9665 5.987019 ATTCTAAGTGGGGGCAAACTATA 57.013 39.130 0.00 0.00 0.00 1.31
3112 9666 4.881157 ATTCTAAGTGGGGGCAAACTAT 57.119 40.909 0.00 0.00 0.00 2.12
3113 9667 4.786454 ACTATTCTAAGTGGGGGCAAACTA 59.214 41.667 0.00 0.00 0.00 2.24
3114 9668 3.591977 ACTATTCTAAGTGGGGGCAAACT 59.408 43.478 0.00 0.00 0.00 2.66
3115 9669 3.964411 ACTATTCTAAGTGGGGGCAAAC 58.036 45.455 0.00 0.00 0.00 2.93
3116 9670 4.668138 AACTATTCTAAGTGGGGGCAAA 57.332 40.909 0.00 0.00 0.00 3.68
3117 9671 4.291249 AGAAACTATTCTAAGTGGGGGCAA 59.709 41.667 0.00 0.00 44.11 4.52
3118 9672 3.850173 AGAAACTATTCTAAGTGGGGGCA 59.150 43.478 0.00 0.00 44.11 5.36
3119 9673 4.505324 AGAAACTATTCTAAGTGGGGGC 57.495 45.455 0.00 0.00 44.11 5.80
3120 9674 5.666265 ACCTAGAAACTATTCTAAGTGGGGG 59.334 44.000 0.00 0.40 45.20 5.40
3121 9675 6.183360 GGACCTAGAAACTATTCTAAGTGGGG 60.183 46.154 4.95 3.08 45.20 4.96
3122 9676 6.461231 CGGACCTAGAAACTATTCTAAGTGGG 60.461 46.154 4.95 3.37 45.20 4.61
3123 9677 6.505272 CGGACCTAGAAACTATTCTAAGTGG 58.495 44.000 4.95 3.65 45.20 4.00
3124 9678 5.978322 GCGGACCTAGAAACTATTCTAAGTG 59.022 44.000 4.95 0.00 45.20 3.16
3125 9679 5.068855 GGCGGACCTAGAAACTATTCTAAGT 59.931 44.000 0.00 0.69 45.20 2.24
3126 9680 5.509332 GGGCGGACCTAGAAACTATTCTAAG 60.509 48.000 0.00 0.00 45.20 2.18
3127 9681 4.343239 GGGCGGACCTAGAAACTATTCTAA 59.657 45.833 0.00 0.00 45.20 2.10
3128 9682 3.893813 GGGCGGACCTAGAAACTATTCTA 59.106 47.826 0.00 0.00 45.20 2.10
3129 9683 4.513248 GGGGCGGACCTAGAAACTATTCT 61.513 52.174 0.00 0.00 41.71 2.40
3130 9684 2.224233 GGGGCGGACCTAGAAACTATTC 60.224 54.545 0.00 0.00 40.03 1.75
3131 9685 1.767088 GGGGCGGACCTAGAAACTATT 59.233 52.381 0.00 0.00 40.03 1.73
3132 9686 1.062352 AGGGGCGGACCTAGAAACTAT 60.062 52.381 0.00 0.00 39.65 2.12
3133 9687 0.337428 AGGGGCGGACCTAGAAACTA 59.663 55.000 0.00 0.00 39.65 2.24
3134 9688 1.080538 AGGGGCGGACCTAGAAACT 59.919 57.895 0.00 0.00 39.65 2.66
3135 9689 1.221021 CAGGGGCGGACCTAGAAAC 59.779 63.158 0.00 0.00 39.34 2.78
3136 9690 1.993391 CCAGGGGCGGACCTAGAAA 60.993 63.158 0.00 0.00 39.34 2.52
3137 9691 2.365105 CCAGGGGCGGACCTAGAA 60.365 66.667 0.00 0.00 39.34 2.10
3138 9692 3.674050 GACCAGGGGCGGACCTAGA 62.674 68.421 0.00 0.00 39.34 2.43
3139 9693 3.155167 GACCAGGGGCGGACCTAG 61.155 72.222 0.00 0.00 39.34 3.02
3140 9694 3.326385 ATGACCAGGGGCGGACCTA 62.326 63.158 0.00 0.00 39.34 3.08
3141 9695 4.741239 ATGACCAGGGGCGGACCT 62.741 66.667 0.00 0.00 43.08 3.85
3142 9696 4.176752 GATGACCAGGGGCGGACC 62.177 72.222 0.00 0.00 39.11 4.46
3143 9697 2.478335 TTTGATGACCAGGGGCGGAC 62.478 60.000 0.00 0.00 0.00 4.79
3144 9698 1.784301 TTTTGATGACCAGGGGCGGA 61.784 55.000 0.00 0.00 0.00 5.54
3145 9699 0.684153 ATTTTGATGACCAGGGGCGG 60.684 55.000 0.00 0.00 0.00 6.13
3146 9700 0.457035 CATTTTGATGACCAGGGGCG 59.543 55.000 0.00 0.00 0.00 6.13
3147 9701 0.826062 CCATTTTGATGACCAGGGGC 59.174 55.000 0.00 0.00 0.00 5.80
3148 9702 2.530460 TCCATTTTGATGACCAGGGG 57.470 50.000 0.00 0.00 0.00 4.79
3149 9703 6.543430 TTTTATCCATTTTGATGACCAGGG 57.457 37.500 0.00 0.00 0.00 4.45
3150 9704 7.385267 TGTTTTTATCCATTTTGATGACCAGG 58.615 34.615 0.00 0.00 0.00 4.45
3187 9741 9.574516 GGGGATGTATCTAGATGTATTTTTGTT 57.425 33.333 15.79 0.00 0.00 2.83
3188 9742 8.949421 AGGGGATGTATCTAGATGTATTTTTGT 58.051 33.333 15.79 0.00 0.00 2.83
3189 9743 9.799106 AAGGGGATGTATCTAGATGTATTTTTG 57.201 33.333 15.79 0.00 0.00 2.44
3190 9744 9.799106 CAAGGGGATGTATCTAGATGTATTTTT 57.201 33.333 15.79 0.00 0.00 1.94
3191 9745 8.949421 ACAAGGGGATGTATCTAGATGTATTTT 58.051 33.333 15.79 0.00 0.00 1.82
3192 9746 8.511748 ACAAGGGGATGTATCTAGATGTATTT 57.488 34.615 15.79 0.00 0.00 1.40
3193 9747 9.790297 ATACAAGGGGATGTATCTAGATGTATT 57.210 33.333 15.79 0.00 41.50 1.89
3209 9763 8.187930 TTTGTCATCAAAATGGATACAAGGGGA 61.188 37.037 0.00 0.00 43.81 4.81
3210 9764 6.070881 TTTGTCATCAAAATGGATACAAGGGG 60.071 38.462 0.00 0.00 43.81 4.79
3211 9765 6.934056 TTTGTCATCAAAATGGATACAAGGG 58.066 36.000 0.00 0.00 43.81 3.95
3217 9771 9.964303 CGGAAATATTTGTCATCAAAATGGATA 57.036 29.630 5.17 0.00 44.97 2.59
3218 9772 7.927629 CCGGAAATATTTGTCATCAAAATGGAT 59.072 33.333 5.17 0.00 44.97 3.41
3219 9773 7.123397 TCCGGAAATATTTGTCATCAAAATGGA 59.877 33.333 0.00 0.00 44.97 3.41
3220 9774 7.222611 GTCCGGAAATATTTGTCATCAAAATGG 59.777 37.037 5.23 0.00 44.97 3.16
3221 9775 7.044117 CGTCCGGAAATATTTGTCATCAAAATG 60.044 37.037 5.23 0.00 44.97 2.32
3222 9776 6.972328 CGTCCGGAAATATTTGTCATCAAAAT 59.028 34.615 5.23 0.00 44.97 1.82
3223 9777 6.318628 CGTCCGGAAATATTTGTCATCAAAA 58.681 36.000 5.23 0.00 44.97 2.44
3224 9778 5.163703 CCGTCCGGAAATATTTGTCATCAAA 60.164 40.000 5.23 0.00 41.49 2.69
3225 9779 4.334203 CCGTCCGGAAATATTTGTCATCAA 59.666 41.667 5.23 0.00 37.50 2.57
3226 9780 3.874543 CCGTCCGGAAATATTTGTCATCA 59.125 43.478 5.23 0.00 37.50 3.07
3227 9781 4.124238 TCCGTCCGGAAATATTTGTCATC 58.876 43.478 5.23 0.00 42.05 2.92
3228 9782 4.127171 CTCCGTCCGGAAATATTTGTCAT 58.873 43.478 5.23 0.00 44.66 3.06
3229 9783 3.527533 CTCCGTCCGGAAATATTTGTCA 58.472 45.455 5.23 0.00 44.66 3.58
3230 9784 2.870411 CCTCCGTCCGGAAATATTTGTC 59.130 50.000 5.23 0.00 44.66 3.18
3231 9785 2.420967 CCCTCCGTCCGGAAATATTTGT 60.421 50.000 5.23 0.00 44.66 2.83
3232 9786 2.158871 TCCCTCCGTCCGGAAATATTTG 60.159 50.000 5.23 0.00 44.66 2.32
3233 9787 2.104281 CTCCCTCCGTCCGGAAATATTT 59.896 50.000 5.23 0.00 44.66 1.40
3234 9788 1.692519 CTCCCTCCGTCCGGAAATATT 59.307 52.381 5.23 0.00 44.66 1.28
3235 9789 1.339097 CTCCCTCCGTCCGGAAATAT 58.661 55.000 5.23 0.00 44.66 1.28
3236 9790 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3237 9791 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3238 9792 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3239 9793 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3240 9794 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3241 9795 0.817229 GTACTACTCCCTCCGTCCGG 60.817 65.000 0.00 0.00 0.00 5.14
3242 9796 0.107508 TGTACTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
3243 9797 1.064832 ACTGTACTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 0.00 4.79
3244 9798 2.416680 ACTGTACTACTCCCTCCGTC 57.583 55.000 0.00 0.00 0.00 4.79
3245 9799 2.895242 AACTGTACTACTCCCTCCGT 57.105 50.000 0.00 0.00 0.00 4.69
3246 9800 6.949352 TTATAAACTGTACTACTCCCTCCG 57.051 41.667 0.00 0.00 0.00 4.63
3247 9801 8.921205 TGAATTATAAACTGTACTACTCCCTCC 58.079 37.037 0.00 0.00 0.00 4.30
3248 9802 9.968870 CTGAATTATAAACTGTACTACTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
3249 9803 9.490083 ACTGAATTATAAACTGTACTACTCCCT 57.510 33.333 0.00 0.00 0.00 4.20
3250 9804 9.530633 CACTGAATTATAAACTGTACTACTCCC 57.469 37.037 0.00 0.00 0.00 4.30
3251 9805 9.530633 CCACTGAATTATAAACTGTACTACTCC 57.469 37.037 0.00 0.00 0.00 3.85
3281 9835 8.453320 CAATGTGTAGCTTTCTTTACATGATGA 58.547 33.333 0.00 0.00 32.87 2.92
3291 9845 6.095440 AGTTGTGAACAATGTGTAGCTTTCTT 59.905 34.615 0.00 0.00 38.24 2.52
3307 9861 8.638685 TTACTGTCTTAACTGTAGTTGTGAAC 57.361 34.615 7.50 2.16 39.86 3.18
3412 9966 7.172532 GCAAAAAGAATGTTTAAAAGGGGTAGG 59.827 37.037 0.00 0.00 0.00 3.18
3415 9969 6.418946 TGCAAAAAGAATGTTTAAAAGGGGT 58.581 32.000 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.