Multiple sequence alignment - TraesCS5B01G053100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G053100 chr5B 100.000 8907 0 0 1 8907 57969299 57960393 0.000000e+00 16449.0
1 TraesCS5B01G053100 chr5B 88.643 1039 98 10 1 1022 190353293 190352258 0.000000e+00 1247.0
2 TraesCS5B01G053100 chr5B 88.749 1031 94 9 1 1024 190345971 190344956 0.000000e+00 1242.0
3 TraesCS5B01G053100 chr5B 85.210 1048 114 24 1 1024 295225846 295226876 0.000000e+00 1038.0
4 TraesCS5B01G053100 chr5B 89.835 787 60 9 7683 8459 57926372 57925596 0.000000e+00 992.0
5 TraesCS5B01G053100 chr5B 89.408 321 22 4 7532 7847 38423203 38423516 2.330000e-105 394.0
6 TraesCS5B01G053100 chr5B 88.462 286 26 4 1025 1309 460019728 460020007 1.110000e-88 339.0
7 TraesCS5B01G053100 chr5B 76.503 549 56 34 8379 8907 38447080 38447575 1.930000e-56 231.0
8 TraesCS5B01G053100 chr5B 81.164 292 31 9 8060 8339 38445083 38445362 7.010000e-51 213.0
9 TraesCS5B01G053100 chr5A 97.170 1908 52 2 4789 6695 44268427 44266521 0.000000e+00 3223.0
10 TraesCS5B01G053100 chr5A 93.664 1894 72 20 2911 4791 44270323 44268465 0.000000e+00 2789.0
11 TraesCS5B01G053100 chr5A 91.161 1154 59 15 7433 8584 44266536 44265424 0.000000e+00 1526.0
12 TraesCS5B01G053100 chr5A 91.008 367 31 2 7434 7799 44110363 44109998 2.230000e-135 494.0
13 TraesCS5B01G053100 chr5A 96.491 285 7 1 1025 1309 44270588 44270307 1.350000e-127 468.0
14 TraesCS5B01G053100 chr5A 88.714 381 24 11 8083 8454 44096994 44096624 1.760000e-121 448.0
15 TraesCS5B01G053100 chr5A 84.876 443 64 3 6029 6471 44144974 44144535 2.280000e-120 444.0
16 TraesCS5B01G053100 chr5A 92.340 235 16 2 7866 8098 44105105 44104871 5.150000e-87 333.0
17 TraesCS5B01G053100 chr5A 96.154 156 6 0 8596 8751 44265448 44265293 1.150000e-63 255.0
18 TraesCS5B01G053100 chr5A 94.702 151 8 0 8757 8907 44265166 44265016 1.500000e-57 235.0
19 TraesCS5B01G053100 chr5A 100.000 32 0 0 8720 8751 44096372 44096341 9.660000e-05 60.2
20 TraesCS5B01G053100 chr5D 96.304 1894 61 5 4808 6695 55417204 55415314 0.000000e+00 3101.0
21 TraesCS5B01G053100 chr5D 93.124 1687 75 21 2911 4591 55529634 55527983 0.000000e+00 2435.0
22 TraesCS5B01G053100 chr5D 93.860 1531 60 3 1310 2837 24027930 24026431 0.000000e+00 2276.0
23 TraesCS5B01G053100 chr5D 92.455 994 59 9 7433 8425 55415329 55414351 0.000000e+00 1406.0
24 TraesCS5B01G053100 chr5D 92.000 825 48 7 7765 8585 55066587 55065777 0.000000e+00 1142.0
25 TraesCS5B01G053100 chr5D 93.304 687 41 3 6012 6695 55067386 55066702 0.000000e+00 1009.0
26 TraesCS5B01G053100 chr5D 97.163 564 14 2 1309 1872 205116841 205117402 0.000000e+00 952.0
27 TraesCS5B01G053100 chr5D 97.158 563 15 1 1310 1872 464904247 464904808 0.000000e+00 950.0
28 TraesCS5B01G053100 chr5D 96.980 563 17 0 1310 1872 372333758 372334320 0.000000e+00 946.0
29 TraesCS5B01G053100 chr5D 96.809 564 18 0 1309 1872 398867289 398866726 0.000000e+00 942.0
30 TraesCS5B01G053100 chr5D 94.375 320 14 2 8588 8907 55304753 55304438 1.040000e-133 488.0
31 TraesCS5B01G053100 chr5D 93.103 319 12 4 8596 8907 55065802 55065487 8.150000e-125 459.0
32 TraesCS5B01G053100 chr5D 94.982 279 11 1 1031 1309 55529893 55529618 1.370000e-117 435.0
33 TraesCS5B01G053100 chr5D 93.776 241 9 1 4587 4821 55514869 55514629 3.060000e-94 357.0
34 TraesCS5B01G053100 chr5D 89.453 256 20 4 8655 8907 55062193 55061942 5.190000e-82 316.0
35 TraesCS5B01G053100 chr5D 95.652 115 5 0 8422 8536 55304871 55304757 1.530000e-42 185.0
36 TraesCS5B01G053100 chr5D 91.176 136 6 2 7433 7568 55066717 55066588 7.100000e-41 180.0
37 TraesCS5B01G053100 chr3D 94.175 1528 57 3 1309 2836 599328638 599327143 0.000000e+00 2300.0
38 TraesCS5B01G053100 chr3D 81.005 1353 195 40 5244 6555 79636515 79635184 0.000000e+00 1018.0
39 TraesCS5B01G053100 chr3D 85.067 750 94 13 4011 4759 79638027 79637295 0.000000e+00 749.0
40 TraesCS5B01G053100 chr3D 88.995 209 23 0 3002 3210 79638784 79638576 8.870000e-65 259.0
41 TraesCS5B01G053100 chr6D 93.783 1528 64 15 1310 2837 53763983 53762487 0.000000e+00 2266.0
42 TraesCS5B01G053100 chr6D 96.975 562 17 0 1311 1872 14595180 14595741 0.000000e+00 944.0
43 TraesCS5B01G053100 chr3B 93.795 1531 58 6 1312 2841 673280793 673282287 0.000000e+00 2266.0
44 TraesCS5B01G053100 chr3B 92.722 1264 62 17 1569 2832 436518888 436517655 0.000000e+00 1797.0
45 TraesCS5B01G053100 chr3B 82.491 1108 157 23 5244 6329 126007193 126006101 0.000000e+00 937.0
46 TraesCS5B01G053100 chr3B 84.533 750 98 13 4011 4759 126008954 126008222 0.000000e+00 726.0
47 TraesCS5B01G053100 chr3B 89.796 196 19 1 3015 3210 126009730 126009536 5.340000e-62 250.0
48 TraesCS5B01G053100 chr2D 93.603 1532 63 4 1309 2837 635868232 635866733 0.000000e+00 2254.0
49 TraesCS5B01G053100 chr2D 93.160 1535 67 7 1308 2835 572214472 572212969 0.000000e+00 2218.0
50 TraesCS5B01G053100 chr2D 92.298 1532 82 13 1312 2839 35668257 35666758 0.000000e+00 2143.0
51 TraesCS5B01G053100 chr2D 96.809 564 17 1 1309 1872 517093106 517092544 0.000000e+00 941.0
52 TraesCS5B01G053100 chr2D 89.860 286 22 3 1025 1309 255811943 255811664 2.360000e-95 361.0
53 TraesCS5B01G053100 chr7D 93.420 1535 62 20 1308 2838 511068839 511070338 0.000000e+00 2239.0
54 TraesCS5B01G053100 chr7D 96.980 563 16 1 1310 1872 557755586 557756147 0.000000e+00 944.0
55 TraesCS5B01G053100 chr7D 96.479 568 19 1 1306 1872 555002388 555002955 0.000000e+00 937.0
56 TraesCS5B01G053100 chr7D 89.655 319 22 5 1 308 616379230 616378912 6.480000e-106 396.0
57 TraesCS5B01G053100 chr7D 85.915 71 10 0 3306 3376 98399218 98399148 9.590000e-10 76.8
58 TraesCS5B01G053100 chr7D 96.875 32 1 0 3306 3337 605218793 605218824 4.000000e-03 54.7
59 TraesCS5B01G053100 chr1B 97.154 738 20 1 6697 7433 68733732 68734469 0.000000e+00 1245.0
60 TraesCS5B01G053100 chr1B 88.093 1033 104 12 1 1024 70745684 70744662 0.000000e+00 1208.0
61 TraesCS5B01G053100 chr1B 96.206 738 27 1 6697 7433 303998792 303998055 0.000000e+00 1206.0
62 TraesCS5B01G053100 chr1B 89.091 660 56 11 1 653 70736787 70736137 0.000000e+00 806.0
63 TraesCS5B01G053100 chr1B 89.710 379 39 0 648 1026 70714912 70714534 1.340000e-132 484.0
64 TraesCS5B01G053100 chr1B 81.779 461 41 28 1 436 357557161 357557603 6.620000e-91 346.0
65 TraesCS5B01G053100 chr1B 84.906 159 20 3 3042 3197 363223719 363223876 3.330000e-34 158.0
66 TraesCS5B01G053100 chr7B 97.019 738 21 1 6697 7433 29064512 29065249 0.000000e+00 1240.0
67 TraesCS5B01G053100 chr7B 95.935 738 27 3 6697 7433 675754391 675755126 0.000000e+00 1194.0
68 TraesCS5B01G053100 chr7B 86.184 1035 117 20 1 1024 288843693 288842674 0.000000e+00 1096.0
69 TraesCS5B01G053100 chr7B 84.527 1047 125 26 1 1025 288836678 288835647 0.000000e+00 1002.0
70 TraesCS5B01G053100 chr4A 96.477 738 25 1 6697 7433 709993528 709994265 0.000000e+00 1218.0
71 TraesCS5B01G053100 chr4A 95.122 41 2 0 3305 3345 734256502 734256462 2.080000e-06 65.8
72 TraesCS5B01G053100 chr2B 96.076 739 27 2 6697 7433 544998480 544999218 0.000000e+00 1203.0
73 TraesCS5B01G053100 chr2B 95.951 741 26 3 6697 7433 29223065 29222325 0.000000e+00 1199.0
74 TraesCS5B01G053100 chr2B 95.013 742 31 3 6697 7433 44162379 44161639 0.000000e+00 1160.0
75 TraesCS5B01G053100 chr6B 95.270 740 30 5 6697 7433 132413485 132412748 0.000000e+00 1168.0
76 TraesCS5B01G053100 chr6B 86.822 1032 100 19 1 1024 455017701 455018704 0.000000e+00 1120.0
77 TraesCS5B01G053100 chr6B 80.233 86 13 4 3305 3386 9413881 9413796 2.690000e-05 62.1
78 TraesCS5B01G053100 chr3A 80.678 1356 194 47 5244 6555 93901094 93899763 0.000000e+00 990.0
79 TraesCS5B01G053100 chr3A 85.349 744 89 14 4011 4752 93902609 93901884 0.000000e+00 752.0
80 TraesCS5B01G053100 chr3A 90.306 196 18 1 3015 3210 93903496 93903302 1.150000e-63 255.0
81 TraesCS5B01G053100 chr1D 83.269 1040 116 37 1 1024 164320323 164319326 0.000000e+00 904.0
82 TraesCS5B01G053100 chrUn 88.448 277 25 3 1034 1309 58671196 58670926 2.400000e-85 327.0
83 TraesCS5B01G053100 chrUn 87.762 286 28 3 1025 1309 433450081 433450360 2.400000e-85 327.0
84 TraesCS5B01G053100 chr4B 79.823 451 49 29 1 428 649403387 649403818 3.150000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G053100 chr5B 57960393 57969299 8906 True 16449.000000 16449 100.000000 1 8907 1 chr5B.!!$R2 8906
1 TraesCS5B01G053100 chr5B 190352258 190353293 1035 True 1247.000000 1247 88.643000 1 1022 1 chr5B.!!$R4 1021
2 TraesCS5B01G053100 chr5B 190344956 190345971 1015 True 1242.000000 1242 88.749000 1 1024 1 chr5B.!!$R3 1023
3 TraesCS5B01G053100 chr5B 295225846 295226876 1030 False 1038.000000 1038 85.210000 1 1024 1 chr5B.!!$F2 1023
4 TraesCS5B01G053100 chr5B 57925596 57926372 776 True 992.000000 992 89.835000 7683 8459 1 chr5B.!!$R1 776
5 TraesCS5B01G053100 chr5B 38445083 38447575 2492 False 222.000000 231 78.833500 8060 8907 2 chr5B.!!$F4 847
6 TraesCS5B01G053100 chr5A 44265016 44270588 5572 True 1416.000000 3223 94.890333 1025 8907 6 chr5A.!!$R5 7882
7 TraesCS5B01G053100 chr5A 44096341 44096994 653 True 254.100000 448 94.357000 8083 8751 2 chr5A.!!$R4 668
8 TraesCS5B01G053100 chr5D 24026431 24027930 1499 True 2276.000000 2276 93.860000 1310 2837 1 chr5D.!!$R1 1527
9 TraesCS5B01G053100 chr5D 55414351 55417204 2853 True 2253.500000 3101 94.379500 4808 8425 2 chr5D.!!$R6 3617
10 TraesCS5B01G053100 chr5D 55527983 55529893 1910 True 1435.000000 2435 94.053000 1031 4591 2 chr5D.!!$R7 3560
11 TraesCS5B01G053100 chr5D 205116841 205117402 561 False 952.000000 952 97.163000 1309 1872 1 chr5D.!!$F1 563
12 TraesCS5B01G053100 chr5D 464904247 464904808 561 False 950.000000 950 97.158000 1310 1872 1 chr5D.!!$F3 562
13 TraesCS5B01G053100 chr5D 372333758 372334320 562 False 946.000000 946 96.980000 1310 1872 1 chr5D.!!$F2 562
14 TraesCS5B01G053100 chr5D 398866726 398867289 563 True 942.000000 942 96.809000 1309 1872 1 chr5D.!!$R3 563
15 TraesCS5B01G053100 chr5D 55061942 55067386 5444 True 621.200000 1142 91.807200 6012 8907 5 chr5D.!!$R4 2895
16 TraesCS5B01G053100 chr3D 599327143 599328638 1495 True 2300.000000 2300 94.175000 1309 2836 1 chr3D.!!$R1 1527
17 TraesCS5B01G053100 chr3D 79635184 79638784 3600 True 675.333333 1018 85.022333 3002 6555 3 chr3D.!!$R2 3553
18 TraesCS5B01G053100 chr6D 53762487 53763983 1496 True 2266.000000 2266 93.783000 1310 2837 1 chr6D.!!$R1 1527
19 TraesCS5B01G053100 chr6D 14595180 14595741 561 False 944.000000 944 96.975000 1311 1872 1 chr6D.!!$F1 561
20 TraesCS5B01G053100 chr3B 673280793 673282287 1494 False 2266.000000 2266 93.795000 1312 2841 1 chr3B.!!$F1 1529
21 TraesCS5B01G053100 chr3B 436517655 436518888 1233 True 1797.000000 1797 92.722000 1569 2832 1 chr3B.!!$R1 1263
22 TraesCS5B01G053100 chr3B 126006101 126009730 3629 True 637.666667 937 85.606667 3015 6329 3 chr3B.!!$R2 3314
23 TraesCS5B01G053100 chr2D 635866733 635868232 1499 True 2254.000000 2254 93.603000 1309 2837 1 chr2D.!!$R5 1528
24 TraesCS5B01G053100 chr2D 572212969 572214472 1503 True 2218.000000 2218 93.160000 1308 2835 1 chr2D.!!$R4 1527
25 TraesCS5B01G053100 chr2D 35666758 35668257 1499 True 2143.000000 2143 92.298000 1312 2839 1 chr2D.!!$R1 1527
26 TraesCS5B01G053100 chr2D 517092544 517093106 562 True 941.000000 941 96.809000 1309 1872 1 chr2D.!!$R3 563
27 TraesCS5B01G053100 chr7D 511068839 511070338 1499 False 2239.000000 2239 93.420000 1308 2838 1 chr7D.!!$F1 1530
28 TraesCS5B01G053100 chr7D 557755586 557756147 561 False 944.000000 944 96.980000 1310 1872 1 chr7D.!!$F3 562
29 TraesCS5B01G053100 chr7D 555002388 555002955 567 False 937.000000 937 96.479000 1306 1872 1 chr7D.!!$F2 566
30 TraesCS5B01G053100 chr1B 68733732 68734469 737 False 1245.000000 1245 97.154000 6697 7433 1 chr1B.!!$F1 736
31 TraesCS5B01G053100 chr1B 70744662 70745684 1022 True 1208.000000 1208 88.093000 1 1024 1 chr1B.!!$R3 1023
32 TraesCS5B01G053100 chr1B 303998055 303998792 737 True 1206.000000 1206 96.206000 6697 7433 1 chr1B.!!$R4 736
33 TraesCS5B01G053100 chr1B 70736137 70736787 650 True 806.000000 806 89.091000 1 653 1 chr1B.!!$R2 652
34 TraesCS5B01G053100 chr7B 29064512 29065249 737 False 1240.000000 1240 97.019000 6697 7433 1 chr7B.!!$F1 736
35 TraesCS5B01G053100 chr7B 675754391 675755126 735 False 1194.000000 1194 95.935000 6697 7433 1 chr7B.!!$F2 736
36 TraesCS5B01G053100 chr7B 288842674 288843693 1019 True 1096.000000 1096 86.184000 1 1024 1 chr7B.!!$R2 1023
37 TraesCS5B01G053100 chr7B 288835647 288836678 1031 True 1002.000000 1002 84.527000 1 1025 1 chr7B.!!$R1 1024
38 TraesCS5B01G053100 chr4A 709993528 709994265 737 False 1218.000000 1218 96.477000 6697 7433 1 chr4A.!!$F1 736
39 TraesCS5B01G053100 chr2B 544998480 544999218 738 False 1203.000000 1203 96.076000 6697 7433 1 chr2B.!!$F1 736
40 TraesCS5B01G053100 chr2B 29222325 29223065 740 True 1199.000000 1199 95.951000 6697 7433 1 chr2B.!!$R1 736
41 TraesCS5B01G053100 chr2B 44161639 44162379 740 True 1160.000000 1160 95.013000 6697 7433 1 chr2B.!!$R2 736
42 TraesCS5B01G053100 chr6B 132412748 132413485 737 True 1168.000000 1168 95.270000 6697 7433 1 chr6B.!!$R2 736
43 TraesCS5B01G053100 chr6B 455017701 455018704 1003 False 1120.000000 1120 86.822000 1 1024 1 chr6B.!!$F1 1023
44 TraesCS5B01G053100 chr3A 93899763 93903496 3733 True 665.666667 990 85.444333 3015 6555 3 chr3A.!!$R1 3540
45 TraesCS5B01G053100 chr1D 164319326 164320323 997 True 904.000000 904 83.269000 1 1024 1 chr1D.!!$R1 1023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 882 1.144057 AATGCTCCTAGCCGTTCCG 59.856 57.895 0.00 0.00 41.51 4.30 F
1514 1578 0.250467 ACCAAACAGACATCGCAGCT 60.250 50.000 0.00 0.00 0.00 4.24 F
1965 2029 0.248843 CTCCTGCCTCTGACTTCCAC 59.751 60.000 0.00 0.00 0.00 4.02 F
2881 2961 0.176680 AATGAGAGGTACCTGCAGCG 59.823 55.000 22.10 4.27 0.00 5.18 F
4167 4471 0.611618 TACCATGGCAAAGGCAGGTG 60.612 55.000 13.04 6.21 42.43 4.00 F
5300 6304 0.317854 GACCACGCCTTCTTTTGCAC 60.318 55.000 0.00 0.00 0.00 4.57 F
6280 7297 2.307768 TCGATATGGTCCTGGACACTC 58.692 52.381 26.94 15.62 33.68 3.51 F
7233 8265 1.999735 CGGATGGCGTTCGCATAATAT 59.000 47.619 18.46 5.01 0.00 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 1926 0.097674 GCTACGCTTTGTCATGCCTG 59.902 55.000 0.00 0.00 0.00 4.85 R
2862 2942 0.176680 CGCTGCAGGTACCTCTCATT 59.823 55.000 12.84 0.00 0.00 2.57 R
2898 2978 0.668706 CACCTTGAGACACTCGGCAG 60.669 60.000 0.00 0.00 32.35 4.85 R
4759 5063 0.038166 ACTGTTATGGGCAGGGTGTG 59.962 55.000 0.00 0.00 38.22 3.82 R
5724 6733 1.765904 TGTACTGTCCACCAAGCTTGA 59.234 47.619 28.05 4.58 0.00 3.02 R
6299 7316 0.035820 TGTATTCGTTGGTGGCCTCC 60.036 55.000 17.33 17.33 0.00 4.30 R
7379 8414 0.536460 TCATGATGATGCATGCGGCT 60.536 50.000 14.09 0.00 44.08 5.52 R
8591 11365 0.100503 ACTTCACGCCAAAGTTGCAC 59.899 50.000 0.00 0.00 33.19 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 3.113322 CAAGAACACGAAGAACACGAGA 58.887 45.455 0.00 0.00 34.70 4.04
99 112 1.525619 CGAGGGAAACACACGAGAAAC 59.474 52.381 0.00 0.00 0.00 2.78
111 126 2.878406 CACGAGAAACCACTCAACCAAT 59.122 45.455 0.00 0.00 36.80 3.16
112 127 2.878406 ACGAGAAACCACTCAACCAATG 59.122 45.455 0.00 0.00 36.80 2.82
140 155 7.789202 ATAAGGTCACACATATGCTAGATCT 57.211 36.000 1.58 0.00 0.00 2.75
171 190 7.327975 ACACAAAGTGATACAAGATCCGAATA 58.672 34.615 3.88 0.00 36.96 1.75
262 309 4.107072 AGAGGAGGTCTTGAATCCAATGA 58.893 43.478 6.09 0.00 35.45 2.57
329 379 2.099263 CAGATGGATGAGCAAGGCTTTG 59.901 50.000 3.80 3.80 39.88 2.77
337 387 2.620115 TGAGCAAGGCTTTGTCTCAAAG 59.380 45.455 23.36 15.22 40.81 2.77
383 439 5.515886 CCCTAACTAGGAGGAGAGGAGTATG 60.516 52.000 13.27 0.00 46.63 2.39
460 520 4.619227 ACACAACCAGCGACCGGG 62.619 66.667 6.32 0.00 0.00 5.73
713 776 2.915659 TGTGAGAGGCCGGTCGTT 60.916 61.111 1.90 0.00 0.00 3.85
770 833 5.771666 TCTTCGGTAGTTCCTCTTCTTGTTA 59.228 40.000 0.00 0.00 0.00 2.41
813 876 1.210478 TCTTGTCCAATGCTCCTAGCC 59.790 52.381 0.00 0.00 41.51 3.93
819 882 1.144057 AATGCTCCTAGCCGTTCCG 59.856 57.895 0.00 0.00 41.51 4.30
865 928 1.262950 TGCATAGCACACACGTTTGAC 59.737 47.619 9.03 0.01 31.71 3.18
999 1062 1.125093 TGGTCGAAGTGGACATGGGT 61.125 55.000 0.00 0.00 38.70 4.51
1050 1113 1.671054 CCCTGGTTACAGCACACCG 60.671 63.158 0.00 0.00 43.53 4.94
1056 1119 1.338389 GGTTACAGCACACCGGTACAT 60.338 52.381 6.87 0.00 0.00 2.29
1090 1153 4.635765 TGATTTCCTTTGCGTATCCTCTTG 59.364 41.667 0.00 0.00 0.00 3.02
1091 1154 3.973206 TTCCTTTGCGTATCCTCTTGA 57.027 42.857 0.00 0.00 0.00 3.02
1092 1155 4.487714 TTCCTTTGCGTATCCTCTTGAT 57.512 40.909 0.00 0.00 37.49 2.57
1156 1219 5.172687 TGAAACTATGCTGGGTGATACAA 57.827 39.130 0.00 0.00 0.00 2.41
1266 1329 0.320050 TCTGCGATGCTGTGTTGGTA 59.680 50.000 0.00 0.00 0.00 3.25
1295 1358 2.580155 TTTGGCACTGGGGCTGTCAA 62.580 55.000 4.70 0.00 43.83 3.18
1296 1359 2.674380 GGCACTGGGGCTGTCAAG 60.674 66.667 0.00 0.00 39.42 3.02
1297 1360 2.674380 GCACTGGGGCTGTCAAGG 60.674 66.667 0.00 0.00 0.00 3.61
1298 1361 2.839098 CACTGGGGCTGTCAAGGT 59.161 61.111 0.00 0.00 0.00 3.50
1299 1362 1.601759 CACTGGGGCTGTCAAGGTG 60.602 63.158 0.00 0.00 0.00 4.00
1300 1363 2.078665 ACTGGGGCTGTCAAGGTGT 61.079 57.895 0.00 0.00 0.00 4.16
1301 1364 1.601759 CTGGGGCTGTCAAGGTGTG 60.602 63.158 0.00 0.00 0.00 3.82
1302 1365 2.055689 CTGGGGCTGTCAAGGTGTGA 62.056 60.000 0.00 0.00 0.00 3.58
1303 1366 1.150536 GGGGCTGTCAAGGTGTGAA 59.849 57.895 0.00 0.00 38.23 3.18
1304 1367 0.467290 GGGGCTGTCAAGGTGTGAAA 60.467 55.000 0.00 0.00 38.23 2.69
1305 1368 1.620822 GGGCTGTCAAGGTGTGAAAT 58.379 50.000 0.00 0.00 38.23 2.17
1306 1369 2.554344 GGGGCTGTCAAGGTGTGAAATA 60.554 50.000 0.00 0.00 38.23 1.40
1307 1370 3.153919 GGGCTGTCAAGGTGTGAAATAA 58.846 45.455 0.00 0.00 38.23 1.40
1363 1426 3.620061 CATCTGGGCGATGCATACT 57.380 52.632 0.00 0.00 42.75 2.12
1514 1578 0.250467 ACCAAACAGACATCGCAGCT 60.250 50.000 0.00 0.00 0.00 4.24
1585 1649 2.899838 GCACACACTGGTTCGGCA 60.900 61.111 0.00 0.00 0.00 5.69
1718 1782 4.408821 TCCTCCCTGCGCGCAAAT 62.409 61.111 35.50 0.00 0.00 2.32
1846 1910 0.606401 CCGACCAGGCATGACAAAGT 60.606 55.000 0.00 0.00 0.00 2.66
1854 1918 1.200020 GGCATGACAAAGTGTAGCACC 59.800 52.381 0.00 0.00 34.49 5.01
1855 1919 2.154462 GCATGACAAAGTGTAGCACCT 58.846 47.619 0.00 0.00 34.49 4.00
1856 1920 2.095567 GCATGACAAAGTGTAGCACCTG 60.096 50.000 0.00 0.00 34.49 4.00
1857 1921 3.141398 CATGACAAAGTGTAGCACCTGT 58.859 45.455 0.00 4.85 34.88 4.00
1858 1922 2.833794 TGACAAAGTGTAGCACCTGTC 58.166 47.619 17.78 17.78 42.73 3.51
1859 1923 1.792949 GACAAAGTGTAGCACCTGTCG 59.207 52.381 12.92 0.00 37.69 4.35
1860 1924 1.148310 CAAAGTGTAGCACCTGTCGG 58.852 55.000 0.00 0.00 34.49 4.79
1862 1926 0.317479 AAGTGTAGCACCTGTCGGTC 59.683 55.000 0.00 0.00 43.24 4.79
1863 1927 0.826256 AGTGTAGCACCTGTCGGTCA 60.826 55.000 0.00 0.00 43.24 4.02
1864 1928 0.388649 GTGTAGCACCTGTCGGTCAG 60.389 60.000 0.00 0.00 43.24 3.51
1878 1942 4.798433 TCAGGCATGACAAAGCGT 57.202 50.000 0.00 0.00 0.00 5.07
1879 1943 3.925453 TCAGGCATGACAAAGCGTA 57.075 47.368 0.00 0.00 0.00 4.42
1880 1944 1.725641 TCAGGCATGACAAAGCGTAG 58.274 50.000 0.00 0.00 0.00 3.51
1965 2029 0.248843 CTCCTGCCTCTGACTTCCAC 59.751 60.000 0.00 0.00 0.00 4.02
2114 2178 0.981183 TGCCTCCATCAAGGTAACGT 59.019 50.000 0.00 0.00 46.39 3.99
2116 2180 1.066430 GCCTCCATCAAGGTAACGTCA 60.066 52.381 0.00 0.00 46.39 4.35
2122 2186 3.556213 CCATCAAGGTAACGTCAAGGACA 60.556 47.826 0.00 0.00 46.39 4.02
2133 2197 3.706373 AAGGACACCGCCATCGCT 61.706 61.111 0.00 0.00 0.00 4.93
2323 2389 1.699656 GCCGTCAGTAGCTGCACATG 61.700 60.000 4.12 0.00 0.00 3.21
2434 2504 2.509336 CGAATCCGGCGAGCAACT 60.509 61.111 9.30 0.00 0.00 3.16
2843 2923 4.200283 GCCAGAGGAGGTCGCGAG 62.200 72.222 10.24 0.00 0.00 5.03
2844 2924 2.438614 CCAGAGGAGGTCGCGAGA 60.439 66.667 10.24 0.00 38.16 4.04
2845 2925 2.477176 CCAGAGGAGGTCGCGAGAG 61.477 68.421 10.24 0.00 43.49 3.20
2857 2937 4.026300 CGAGAGCAGGAGTCCCTT 57.974 61.111 5.25 0.00 42.02 3.95
2858 2938 2.281830 CGAGAGCAGGAGTCCCTTT 58.718 57.895 5.25 0.00 42.02 3.11
2859 2939 0.610687 CGAGAGCAGGAGTCCCTTTT 59.389 55.000 5.25 0.00 42.02 2.27
2860 2940 1.825474 CGAGAGCAGGAGTCCCTTTTA 59.175 52.381 5.25 0.00 42.02 1.52
2861 2941 2.233922 CGAGAGCAGGAGTCCCTTTTAA 59.766 50.000 5.25 0.00 42.02 1.52
2862 2942 3.306780 CGAGAGCAGGAGTCCCTTTTAAA 60.307 47.826 5.25 0.00 42.02 1.52
2863 2943 4.652822 GAGAGCAGGAGTCCCTTTTAAAA 58.347 43.478 5.25 0.00 42.02 1.52
2864 2944 5.257262 GAGAGCAGGAGTCCCTTTTAAAAT 58.743 41.667 5.25 0.00 42.02 1.82
2865 2945 5.012893 AGAGCAGGAGTCCCTTTTAAAATG 58.987 41.667 5.25 0.00 42.02 2.32
2866 2946 4.998051 AGCAGGAGTCCCTTTTAAAATGA 58.002 39.130 5.25 0.00 42.02 2.57
2867 2947 5.012893 AGCAGGAGTCCCTTTTAAAATGAG 58.987 41.667 5.25 0.00 42.02 2.90
2868 2948 5.010282 GCAGGAGTCCCTTTTAAAATGAGA 58.990 41.667 5.25 0.00 42.02 3.27
2869 2949 5.124617 GCAGGAGTCCCTTTTAAAATGAGAG 59.875 44.000 5.25 0.00 42.02 3.20
2870 2950 5.649831 CAGGAGTCCCTTTTAAAATGAGAGG 59.350 44.000 5.25 0.00 42.02 3.69
2871 2951 5.313506 AGGAGTCCCTTTTAAAATGAGAGGT 59.686 40.000 5.25 0.00 40.78 3.85
2872 2952 6.504279 AGGAGTCCCTTTTAAAATGAGAGGTA 59.496 38.462 5.25 0.00 40.78 3.08
2873 2953 6.598457 GGAGTCCCTTTTAAAATGAGAGGTAC 59.402 42.308 0.09 0.00 0.00 3.34
2874 2954 6.482524 AGTCCCTTTTAAAATGAGAGGTACC 58.517 40.000 2.73 2.73 0.00 3.34
2875 2955 6.274908 AGTCCCTTTTAAAATGAGAGGTACCT 59.725 38.462 16.26 16.26 0.00 3.08
2876 2956 6.374613 GTCCCTTTTAAAATGAGAGGTACCTG 59.625 42.308 22.10 0.00 0.00 4.00
2877 2957 5.125578 CCCTTTTAAAATGAGAGGTACCTGC 59.874 44.000 22.10 11.87 0.00 4.85
2878 2958 5.710099 CCTTTTAAAATGAGAGGTACCTGCA 59.290 40.000 22.10 17.54 0.00 4.41
2879 2959 6.127897 CCTTTTAAAATGAGAGGTACCTGCAG 60.128 42.308 22.10 6.78 0.00 4.41
2880 2960 2.409948 AAATGAGAGGTACCTGCAGC 57.590 50.000 22.10 4.42 0.00 5.25
2881 2961 0.176680 AATGAGAGGTACCTGCAGCG 59.823 55.000 22.10 4.27 0.00 5.18
2882 2962 0.972983 ATGAGAGGTACCTGCAGCGT 60.973 55.000 22.10 10.58 0.00 5.07
2883 2963 1.139947 GAGAGGTACCTGCAGCGTC 59.860 63.158 22.10 2.60 0.00 5.19
2884 2964 2.202623 GAGGTACCTGCAGCGTCG 60.203 66.667 22.10 0.00 0.00 5.12
2885 2965 2.989824 AGGTACCTGCAGCGTCGT 60.990 61.111 15.42 3.10 0.00 4.34
2886 2966 2.506438 GGTACCTGCAGCGTCGTC 60.506 66.667 8.66 3.02 0.00 4.20
2887 2967 2.506438 GTACCTGCAGCGTCGTCC 60.506 66.667 8.66 0.00 0.00 4.79
2888 2968 2.986979 TACCTGCAGCGTCGTCCA 60.987 61.111 8.66 0.00 0.00 4.02
2889 2969 2.566570 TACCTGCAGCGTCGTCCAA 61.567 57.895 8.66 0.00 0.00 3.53
2890 2970 2.486636 TACCTGCAGCGTCGTCCAAG 62.487 60.000 8.66 0.00 0.00 3.61
2891 2971 2.049156 CTGCAGCGTCGTCCAAGA 60.049 61.111 0.00 0.00 0.00 3.02
2892 2972 2.355837 TGCAGCGTCGTCCAAGAC 60.356 61.111 0.00 0.00 37.76 3.01
2893 2973 3.112709 GCAGCGTCGTCCAAGACC 61.113 66.667 0.00 0.00 37.85 3.85
2894 2974 2.651361 CAGCGTCGTCCAAGACCT 59.349 61.111 0.00 0.00 37.85 3.85
2895 2975 1.734477 CAGCGTCGTCCAAGACCTG 60.734 63.158 0.00 0.00 37.85 4.00
2897 2977 2.261671 CGTCGTCCAAGACCTGGG 59.738 66.667 0.00 0.00 46.44 4.45
2902 2982 3.650950 TCCAAGACCTGGGCTGCC 61.651 66.667 11.05 11.05 46.44 4.85
2904 2984 4.020617 CAAGACCTGGGCTGCCGA 62.021 66.667 13.40 8.10 0.00 5.54
2905 2985 3.710722 AAGACCTGGGCTGCCGAG 61.711 66.667 22.23 22.23 0.00 4.63
2907 2987 4.767255 GACCTGGGCTGCCGAGTG 62.767 72.222 25.95 19.71 0.00 3.51
2909 2989 4.767255 CCTGGGCTGCCGAGTGTC 62.767 72.222 25.95 6.68 0.00 3.67
2910 2990 3.699894 CTGGGCTGCCGAGTGTCT 61.700 66.667 21.09 0.00 0.00 3.41
2911 2991 3.655810 CTGGGCTGCCGAGTGTCTC 62.656 68.421 21.09 1.52 0.00 3.36
2912 2992 3.695606 GGGCTGCCGAGTGTCTCA 61.696 66.667 13.40 0.00 0.00 3.27
2921 3001 1.068588 CCGAGTGTCTCAAGGTGTGAA 59.931 52.381 0.00 0.00 35.22 3.18
2984 3064 2.022934 TGAAACTTGTGCATGCACTGA 58.977 42.857 41.43 30.66 46.30 3.41
2996 3076 0.690762 TGCACTGACCCCTCTTAACC 59.309 55.000 0.00 0.00 0.00 2.85
2999 3079 1.978580 CACTGACCCCTCTTAACCTGT 59.021 52.381 0.00 0.00 0.00 4.00
3000 3080 1.978580 ACTGACCCCTCTTAACCTGTG 59.021 52.381 0.00 0.00 0.00 3.66
3150 3233 4.815308 CACACAATTTGAAGGAATGCCAAA 59.185 37.500 2.79 0.00 36.29 3.28
3205 3288 3.007614 TGAAGGCAAAGGTAGTACTGGAC 59.992 47.826 5.39 0.00 0.00 4.02
3272 3357 0.893727 GGTTGTTGGGGGTACTGCAG 60.894 60.000 13.48 13.48 0.00 4.41
3280 3365 2.175069 TGGGGGTACTGCAGTTGTTTAA 59.825 45.455 27.06 1.88 0.00 1.52
3346 3432 7.081857 AGTTGTAACCCACTACCTAATTTCA 57.918 36.000 0.00 0.00 33.88 2.69
3403 3490 4.707105 CATGTATGCCAGTCATCAACCTA 58.293 43.478 0.00 0.00 36.63 3.08
3436 3523 3.198068 CCTACTTGTCTTATGCATGCGT 58.802 45.455 18.07 18.07 0.00 5.24
3571 3659 2.395360 GGCAACGCGCAGATTACCA 61.395 57.895 5.73 0.00 45.17 3.25
3584 3672 6.423905 GCGCAGATTACCATCTAGTTTTCATA 59.576 38.462 0.30 0.00 37.71 2.15
3611 3701 8.832735 AGTATAAGAGGGGACAAAGTGAAATAA 58.167 33.333 0.00 0.00 0.00 1.40
3790 3909 6.972901 GTCCTTTAAAACTTTGAGTGGTCTTG 59.027 38.462 0.00 0.00 0.00 3.02
3801 3920 3.964688 TGAGTGGTCTTGGTTTCTGTCTA 59.035 43.478 0.00 0.00 0.00 2.59
3802 3921 4.202223 TGAGTGGTCTTGGTTTCTGTCTAC 60.202 45.833 0.00 0.00 0.00 2.59
3876 3995 6.183361 GGTTGGGTATCCATAGTTAGTCATGT 60.183 42.308 0.00 0.00 43.63 3.21
4013 4317 6.882140 TCGGATTTTGCTAAGTAATTCAGGAA 59.118 34.615 0.00 0.00 0.00 3.36
4040 4344 8.891671 AACAATGTTTTATTCTGCTTGACAAT 57.108 26.923 0.00 0.00 0.00 2.71
4110 4414 9.554395 TTTGTTCAAGAAGTAATGATGTAGTGA 57.446 29.630 0.00 0.00 0.00 3.41
4117 4421 6.879458 AGAAGTAATGATGTAGTGAAACCCAC 59.121 38.462 0.00 0.00 46.03 4.61
4167 4471 0.611618 TACCATGGCAAAGGCAGGTG 60.612 55.000 13.04 6.21 42.43 4.00
4299 4603 2.460757 AGATGCCATGCCAAAACAAC 57.539 45.000 0.00 0.00 0.00 3.32
4304 4608 2.681848 TGCCATGCCAAAACAACAAAAG 59.318 40.909 0.00 0.00 0.00 2.27
4305 4609 2.682352 GCCATGCCAAAACAACAAAAGT 59.318 40.909 0.00 0.00 0.00 2.66
4306 4610 3.487209 GCCATGCCAAAACAACAAAAGTG 60.487 43.478 0.00 0.00 0.00 3.16
4307 4611 3.065095 CCATGCCAAAACAACAAAAGTGG 59.935 43.478 0.00 0.00 0.00 4.00
4311 4615 4.000325 GCCAAAACAACAAAAGTGGAAGT 59.000 39.130 0.00 0.00 0.00 3.01
4412 4716 1.376683 GGCCATCGTGTACCTGCAA 60.377 57.895 0.00 0.00 0.00 4.08
4413 4717 0.958382 GGCCATCGTGTACCTGCAAA 60.958 55.000 0.00 0.00 0.00 3.68
4772 5084 2.115910 CACACACACCCTGCCCAT 59.884 61.111 0.00 0.00 0.00 4.00
4782 5098 3.783642 ACACCCTGCCCATAACAGTAATA 59.216 43.478 0.00 0.00 33.09 0.98
4898 5296 9.929180 TCTTGGCAGTATGTGTAGATATATTTC 57.071 33.333 0.00 0.00 39.31 2.17
5187 6186 8.181573 TCGGTCTGCATTTGAAAATTACTTATC 58.818 33.333 0.00 0.00 0.00 1.75
5190 6189 9.214953 GTCTGCATTTGAAAATTACTTATCGAG 57.785 33.333 0.00 0.00 0.00 4.04
5300 6304 0.317854 GACCACGCCTTCTTTTGCAC 60.318 55.000 0.00 0.00 0.00 4.57
5345 6349 2.423185 TGATGCACATGGTCGGAAAATC 59.577 45.455 0.00 0.00 0.00 2.17
5514 6518 3.010027 TGGAATTCCTGAATGTGGCACTA 59.990 43.478 24.73 5.69 36.82 2.74
5936 6945 2.704464 AGAGGCCATAAAACCGTACC 57.296 50.000 5.01 0.00 0.00 3.34
6048 7057 3.822735 CACCCATTCATGCCCTATGTAAG 59.177 47.826 0.00 0.00 38.01 2.34
6065 7074 6.552445 ATGTAAGAGAAGAGTTATGGCAGT 57.448 37.500 0.00 0.00 0.00 4.40
6137 7147 6.414732 TCAGAATACCCATCTGTTGTTAAGG 58.585 40.000 3.72 0.00 43.77 2.69
6148 7158 7.012894 CCATCTGTTGTTAAGGTAAACACTCAA 59.987 37.037 0.00 0.00 39.02 3.02
6257 7270 7.898918 TGGGCATATGATAATCTTGAAAATGG 58.101 34.615 6.97 0.00 0.00 3.16
6280 7297 2.307768 TCGATATGGTCCTGGACACTC 58.692 52.381 26.94 15.62 33.68 3.51
6299 7316 4.627467 CACTCTGAACAAACTAAGATCCCG 59.373 45.833 0.00 0.00 0.00 5.14
6512 7544 6.712179 TGCCATTGTTCAATGCTATCAATA 57.288 33.333 17.04 0.00 0.00 1.90
6558 7590 2.735134 CTCGTCCCTTAAGGTTTTCACG 59.265 50.000 20.22 17.44 36.75 4.35
6681 7713 4.446051 GCTGAAACCATAAGTCGAGCTATC 59.554 45.833 0.00 0.00 0.00 2.08
6682 7714 4.945246 TGAAACCATAAGTCGAGCTATCC 58.055 43.478 0.00 0.00 0.00 2.59
6683 7715 4.649674 TGAAACCATAAGTCGAGCTATCCT 59.350 41.667 0.00 0.00 0.00 3.24
6684 7716 4.592485 AACCATAAGTCGAGCTATCCTG 57.408 45.455 0.00 0.00 0.00 3.86
6685 7717 3.567397 ACCATAAGTCGAGCTATCCTGT 58.433 45.455 0.00 0.00 0.00 4.00
6686 7718 4.726583 ACCATAAGTCGAGCTATCCTGTA 58.273 43.478 0.00 0.00 0.00 2.74
6687 7719 4.762765 ACCATAAGTCGAGCTATCCTGTAG 59.237 45.833 0.00 0.00 0.00 2.74
6688 7720 4.762765 CCATAAGTCGAGCTATCCTGTAGT 59.237 45.833 0.00 0.00 0.00 2.73
6689 7721 5.335269 CCATAAGTCGAGCTATCCTGTAGTG 60.335 48.000 0.00 0.00 0.00 2.74
6690 7722 2.577700 AGTCGAGCTATCCTGTAGTGG 58.422 52.381 0.00 0.00 0.00 4.00
6691 7723 2.172930 AGTCGAGCTATCCTGTAGTGGA 59.827 50.000 0.00 0.00 40.82 4.02
6692 7724 2.291190 GTCGAGCTATCCTGTAGTGGAC 59.709 54.545 0.00 0.00 39.17 4.02
6693 7725 2.172930 TCGAGCTATCCTGTAGTGGACT 59.827 50.000 0.00 0.00 39.17 3.85
6694 7726 2.952978 CGAGCTATCCTGTAGTGGACTT 59.047 50.000 0.00 0.00 39.17 3.01
6695 7727 3.243234 CGAGCTATCCTGTAGTGGACTTG 60.243 52.174 0.00 0.00 39.17 3.16
6964 7996 2.482721 GTCTATGTTTGGGACGTGGTTG 59.517 50.000 0.00 0.00 0.00 3.77
7233 8265 1.999735 CGGATGGCGTTCGCATAATAT 59.000 47.619 18.46 5.01 0.00 1.28
7433 8471 4.164030 GGGTATGCCTCCATTTCCAAAAAT 59.836 41.667 0.00 0.00 33.51 1.82
7529 8567 3.599792 ATTGCGCAACTGCTGTCGC 62.600 57.895 27.64 18.70 45.10 5.19
7537 8575 0.027586 AACTGCTGTCGCGAACAAAC 59.972 50.000 12.06 0.00 37.45 2.93
7561 8599 0.037232 GAGCGTGTACCTCCAGCTTT 60.037 55.000 0.00 0.00 38.39 3.51
7635 8673 8.238631 AGAGACGAAATTCAGAAGTAAGTCTAC 58.761 37.037 16.18 11.74 36.68 2.59
7792 8830 2.370349 CTTCGGGCTACAGAGAGAAGA 58.630 52.381 0.00 0.00 37.78 2.87
7938 8976 5.008980 TCTGTTATGATTTGTGATGTGGCA 58.991 37.500 0.00 0.00 0.00 4.92
7964 9002 7.471657 TTTTGTATATACGTTGATGTCGCAT 57.528 32.000 8.33 0.00 0.00 4.73
7990 9028 1.922570 CTGGCAATGCTCAGATTTGC 58.077 50.000 15.45 3.92 43.83 3.68
7999 9037 3.479489 TGCTCAGATTTGCAGAAAGTCA 58.521 40.909 0.00 0.00 34.84 3.41
8098 9137 5.273523 CATGTGTATATGCAACGGATCAG 57.726 43.478 0.00 0.00 0.00 2.90
8219 9260 3.122150 CGAGCACGGACTTGAATGA 57.878 52.632 0.00 0.00 35.72 2.57
8220 9261 1.428448 CGAGCACGGACTTGAATGAA 58.572 50.000 0.00 0.00 35.72 2.57
8221 9262 2.002586 CGAGCACGGACTTGAATGAAT 58.997 47.619 0.00 0.00 35.72 2.57
8222 9263 2.416547 CGAGCACGGACTTGAATGAATT 59.583 45.455 0.00 0.00 35.72 2.17
8223 9264 3.120199 CGAGCACGGACTTGAATGAATTT 60.120 43.478 0.00 0.00 35.72 1.82
8224 9265 4.092821 CGAGCACGGACTTGAATGAATTTA 59.907 41.667 0.00 0.00 35.72 1.40
8225 9266 5.390461 CGAGCACGGACTTGAATGAATTTAA 60.390 40.000 0.00 0.00 35.72 1.52
8226 9267 6.325919 AGCACGGACTTGAATGAATTTAAA 57.674 33.333 0.00 0.00 0.00 1.52
8227 9268 6.924111 AGCACGGACTTGAATGAATTTAAAT 58.076 32.000 0.00 0.00 0.00 1.40
8353 9410 5.356751 GGTGCATGTCATAGATGGTGTTTTA 59.643 40.000 0.00 0.00 0.00 1.52
8395 11151 6.834959 ATGAAGAACGTGTGCTTATCTATG 57.165 37.500 0.00 0.00 0.00 2.23
8403 11159 4.677378 CGTGTGCTTATCTATGAGTGTAGC 59.323 45.833 0.00 0.00 0.00 3.58
8437 11195 1.609208 AAAGTCCATCAGTGTGGTGC 58.391 50.000 10.36 6.40 40.27 5.01
8489 11249 1.668826 TACCTTGCTTCCACCCAGAT 58.331 50.000 0.00 0.00 0.00 2.90
8506 11268 0.960286 GATACTGTACCTCCCGCCTC 59.040 60.000 0.00 0.00 0.00 4.70
8535 11297 8.380742 AGAGTAAAATTCTATCTCCAGAACCA 57.619 34.615 0.00 0.00 37.37 3.67
8536 11298 8.997734 AGAGTAAAATTCTATCTCCAGAACCAT 58.002 33.333 0.00 0.00 37.37 3.55
8579 11353 6.205784 CAAAAACTTTGGCTCGAAGTTCATA 58.794 36.000 16.32 0.00 44.43 2.15
8580 11354 5.613358 AAACTTTGGCTCGAAGTTCATAG 57.387 39.130 16.32 0.90 44.43 2.23
8581 11355 4.537135 ACTTTGGCTCGAAGTTCATAGA 57.463 40.909 3.32 0.00 34.77 1.98
8582 11356 4.894784 ACTTTGGCTCGAAGTTCATAGAA 58.105 39.130 3.32 0.00 34.77 2.10
8583 11357 5.305585 ACTTTGGCTCGAAGTTCATAGAAA 58.694 37.500 3.32 0.00 34.77 2.52
8584 11358 5.763204 ACTTTGGCTCGAAGTTCATAGAAAA 59.237 36.000 3.32 4.24 34.77 2.29
8585 11359 6.431234 ACTTTGGCTCGAAGTTCATAGAAAAT 59.569 34.615 3.32 0.00 34.77 1.82
8586 11360 5.801350 TGGCTCGAAGTTCATAGAAAATG 57.199 39.130 3.32 0.00 0.00 2.32
8587 11361 5.245531 TGGCTCGAAGTTCATAGAAAATGT 58.754 37.500 3.32 0.00 0.00 2.71
8588 11362 5.705441 TGGCTCGAAGTTCATAGAAAATGTT 59.295 36.000 3.32 0.00 0.00 2.71
8589 11363 6.024049 GGCTCGAAGTTCATAGAAAATGTTG 58.976 40.000 3.32 0.00 0.00 3.33
8590 11364 5.509622 GCTCGAAGTTCATAGAAAATGTTGC 59.490 40.000 3.32 0.00 0.00 4.17
8591 11365 5.617609 TCGAAGTTCATAGAAAATGTTGCG 58.382 37.500 3.32 0.00 0.00 4.85
8592 11366 5.178623 TCGAAGTTCATAGAAAATGTTGCGT 59.821 36.000 3.32 0.00 0.00 5.24
8593 11367 5.281376 CGAAGTTCATAGAAAATGTTGCGTG 59.719 40.000 3.32 0.00 0.00 5.34
8594 11368 4.475944 AGTTCATAGAAAATGTTGCGTGC 58.524 39.130 0.00 0.00 0.00 5.34
8595 11369 4.023279 AGTTCATAGAAAATGTTGCGTGCA 60.023 37.500 0.00 0.00 0.00 4.57
8596 11370 4.495911 TCATAGAAAATGTTGCGTGCAA 57.504 36.364 2.58 2.58 0.00 4.08
8604 11378 2.278466 TTGCGTGCAACTTTGGCG 60.278 55.556 2.58 0.00 31.75 5.69
8605 11379 3.057547 TTGCGTGCAACTTTGGCGT 62.058 52.632 2.58 0.00 31.75 5.68
8606 11380 3.024043 GCGTGCAACTTTGGCGTG 61.024 61.111 0.00 0.00 31.75 5.34
8607 11381 2.712539 CGTGCAACTTTGGCGTGA 59.287 55.556 0.00 0.00 31.75 4.35
8608 11382 1.063327 CGTGCAACTTTGGCGTGAA 59.937 52.632 0.00 0.00 31.75 3.18
8609 11383 0.929824 CGTGCAACTTTGGCGTGAAG 60.930 55.000 0.00 0.00 31.75 3.02
8610 11384 0.100503 GTGCAACTTTGGCGTGAAGT 59.899 50.000 0.00 0.00 38.92 3.01
8611 11385 0.814457 TGCAACTTTGGCGTGAAGTT 59.186 45.000 7.40 7.40 45.49 2.66
8612 11386 1.202245 TGCAACTTTGGCGTGAAGTTC 60.202 47.619 9.56 0.00 43.44 3.01
8613 11387 1.202245 GCAACTTTGGCGTGAAGTTCA 60.202 47.619 0.08 0.08 43.44 3.18
8614 11388 2.543653 GCAACTTTGGCGTGAAGTTCAT 60.544 45.455 9.18 0.00 43.44 2.57
8622 11396 2.607038 GGCGTGAAGTTCATGGAAAACC 60.607 50.000 23.30 13.31 34.08 3.27
8718 11492 5.053145 GGTCAGCAAGAGTTATCCACATAG 58.947 45.833 0.00 0.00 0.00 2.23
8791 11699 7.391148 ACATTTAACGCATTCAAACCTATCT 57.609 32.000 0.00 0.00 0.00 1.98
8792 11700 7.250569 ACATTTAACGCATTCAAACCTATCTG 58.749 34.615 0.00 0.00 0.00 2.90
8881 11800 1.484038 ACATTGCAACAACACCACCT 58.516 45.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 0.109913 GTGTTTCCCTCGTTTCCCCT 59.890 55.000 0.00 0.00 0.00 4.79
111 126 6.239217 AGCATATGTGTGACCTTATTCTCA 57.761 37.500 4.29 0.00 0.00 3.27
112 127 7.661968 TCTAGCATATGTGTGACCTTATTCTC 58.338 38.462 4.29 0.00 0.00 2.87
140 155 5.838529 TCTTGTATCACTTTGTGTCTCGAA 58.161 37.500 0.00 0.00 34.79 3.71
171 190 4.224370 ACCCTATGTATCGTCCTTTGTTGT 59.776 41.667 0.00 0.00 0.00 3.32
209 228 3.012959 ACCCTCTTCAAGACCTCCTCATA 59.987 47.826 0.00 0.00 0.00 2.15
210 229 2.225753 ACCCTCTTCAAGACCTCCTCAT 60.226 50.000 0.00 0.00 0.00 2.90
337 387 5.409826 GGGTTAGCATTGTGATAGCTCATAC 59.590 44.000 0.00 0.00 39.68 2.39
383 439 3.819902 CCCTTCGTGGTCCTAGACTATAC 59.180 52.174 0.00 0.00 32.47 1.47
690 753 3.753434 CGGCCTCTCACAGCGAGT 61.753 66.667 0.00 0.00 42.88 4.18
770 833 1.598130 GAGGACACCAAGCGCAAGT 60.598 57.895 11.47 0.00 41.68 3.16
819 882 1.700186 AGGAACCAAGAGGAAGACCAC 59.300 52.381 0.00 0.00 38.69 4.16
865 928 3.717400 ATGTGAGACATGGCTACTACG 57.283 47.619 0.00 0.00 37.45 3.51
888 951 2.300437 CCTCTCCGAACCTTCACTTTCT 59.700 50.000 0.00 0.00 0.00 2.52
1050 1113 6.015434 AGGAAATCAAGACACCAAAATGTACC 60.015 38.462 0.00 0.00 31.24 3.34
1056 1119 5.115480 GCAAAGGAAATCAAGACACCAAAA 58.885 37.500 0.00 0.00 0.00 2.44
1090 1153 2.774234 TCTCACCCAATCCTCCTTCATC 59.226 50.000 0.00 0.00 0.00 2.92
1091 1154 2.850833 TCTCACCCAATCCTCCTTCAT 58.149 47.619 0.00 0.00 0.00 2.57
1092 1155 2.342406 TCTCACCCAATCCTCCTTCA 57.658 50.000 0.00 0.00 0.00 3.02
1156 1219 3.776969 TCCTCTGGATGAACAGCTATTGT 59.223 43.478 0.00 0.00 43.45 2.71
1514 1578 6.321690 GTCTCAGGTCTTAGATGTTAGGCTTA 59.678 42.308 0.00 0.00 0.00 3.09
1585 1649 3.859414 GGCGGCCTCTGAGAGCAT 61.859 66.667 12.87 0.00 0.00 3.79
1718 1782 4.476410 CCGCGACGTGCTCAGCTA 62.476 66.667 8.23 0.00 43.27 3.32
1854 1918 4.192000 GTCATGCCTGACCGACAG 57.808 61.111 10.74 3.25 45.06 3.51
1861 1925 1.725641 CTACGCTTTGTCATGCCTGA 58.274 50.000 0.00 0.00 0.00 3.86
1862 1926 0.097674 GCTACGCTTTGTCATGCCTG 59.902 55.000 0.00 0.00 0.00 4.85
1863 1927 0.321564 TGCTACGCTTTGTCATGCCT 60.322 50.000 0.00 0.00 0.00 4.75
1864 1928 0.097674 CTGCTACGCTTTGTCATGCC 59.902 55.000 0.00 0.00 0.00 4.40
1865 1929 0.522076 GCTGCTACGCTTTGTCATGC 60.522 55.000 0.00 0.00 0.00 4.06
1866 1930 1.081892 AGCTGCTACGCTTTGTCATG 58.918 50.000 0.00 0.00 36.74 3.07
1867 1931 1.081892 CAGCTGCTACGCTTTGTCAT 58.918 50.000 0.00 0.00 38.41 3.06
1868 1932 0.249868 ACAGCTGCTACGCTTTGTCA 60.250 50.000 15.27 0.00 38.41 3.58
1869 1933 0.440371 GACAGCTGCTACGCTTTGTC 59.560 55.000 15.27 0.60 38.41 3.18
1870 1934 1.284982 CGACAGCTGCTACGCTTTGT 61.285 55.000 15.27 0.00 38.41 2.83
1871 1935 1.417592 CGACAGCTGCTACGCTTTG 59.582 57.895 15.27 0.00 38.41 2.77
1872 1936 1.738099 CCGACAGCTGCTACGCTTT 60.738 57.895 15.27 0.00 38.41 3.51
1873 1937 2.125912 CCGACAGCTGCTACGCTT 60.126 61.111 15.27 0.00 38.41 4.68
1874 1938 3.343788 GACCGACAGCTGCTACGCT 62.344 63.158 15.27 4.86 41.90 5.07
1875 1939 2.881352 GACCGACAGCTGCTACGC 60.881 66.667 15.27 2.38 0.00 4.42
1876 1940 1.515088 CTGACCGACAGCTGCTACG 60.515 63.158 15.27 16.65 39.86 3.51
1877 1941 1.153745 CCTGACCGACAGCTGCTAC 60.154 63.158 15.27 4.81 44.52 3.58
1878 1942 3.006756 GCCTGACCGACAGCTGCTA 62.007 63.158 15.27 0.00 44.52 3.49
1879 1943 4.385405 GCCTGACCGACAGCTGCT 62.385 66.667 15.27 0.00 44.52 4.24
1880 1944 3.965539 ATGCCTGACCGACAGCTGC 62.966 63.158 15.27 5.81 44.52 5.25
1881 1945 2.104859 CATGCCTGACCGACAGCTG 61.105 63.158 13.48 13.48 44.52 4.24
1882 1946 2.267006 CATGCCTGACCGACAGCT 59.733 61.111 4.47 0.00 44.52 4.24
1883 1947 2.103042 GTCATGCCTGACCGACAGC 61.103 63.158 10.74 0.00 45.06 4.40
1965 2029 2.034879 ATCGTTTGTGGAGCAGCGG 61.035 57.895 0.00 0.00 0.00 5.52
2013 2077 2.721859 CAGATCGGACGATGGCGA 59.278 61.111 12.40 0.00 41.64 5.54
2114 2178 2.264480 CGATGGCGGTGTCCTTGA 59.736 61.111 0.00 0.00 0.00 3.02
2133 2197 1.216941 GAAAACCGAGCCGACGACAA 61.217 55.000 0.00 0.00 35.09 3.18
2323 2389 2.161609 GTGCTATTGGTGGTTGTGCTAC 59.838 50.000 0.00 0.00 0.00 3.58
2434 2504 1.175347 TGGTGCATGCGGTTTTGCTA 61.175 50.000 14.09 0.00 39.60 3.49
2681 2755 2.047274 CGCTTTCTCCTTCCCGCA 60.047 61.111 0.00 0.00 0.00 5.69
2685 2759 2.438614 GGGGCGCTTTCTCCTTCC 60.439 66.667 7.64 0.00 0.00 3.46
2841 2921 3.983044 TTAAAAGGGACTCCTGCTCTC 57.017 47.619 0.00 0.00 44.07 3.20
2842 2922 4.724279 TTTTAAAAGGGACTCCTGCTCT 57.276 40.909 0.00 0.00 44.07 4.09
2843 2923 5.010282 TCATTTTAAAAGGGACTCCTGCTC 58.990 41.667 12.28 0.00 44.07 4.26
2844 2924 4.998051 TCATTTTAAAAGGGACTCCTGCT 58.002 39.130 12.28 0.00 44.07 4.24
2845 2925 5.010282 TCTCATTTTAAAAGGGACTCCTGC 58.990 41.667 12.28 0.00 44.07 4.85
2846 2926 5.649831 CCTCTCATTTTAAAAGGGACTCCTG 59.350 44.000 12.28 0.80 44.07 3.86
2848 2928 5.571285 ACCTCTCATTTTAAAAGGGACTCC 58.429 41.667 12.28 0.00 38.49 3.85
2849 2929 6.598457 GGTACCTCTCATTTTAAAAGGGACTC 59.402 42.308 14.99 5.17 40.28 3.36
2850 2930 6.274908 AGGTACCTCTCATTTTAAAAGGGACT 59.725 38.462 9.21 4.97 40.28 3.85
2851 2931 6.374613 CAGGTACCTCTCATTTTAAAAGGGAC 59.625 42.308 12.84 10.56 39.79 4.46
2852 2932 6.481643 CAGGTACCTCTCATTTTAAAAGGGA 58.518 40.000 12.84 8.46 0.00 4.20
2853 2933 5.125578 GCAGGTACCTCTCATTTTAAAAGGG 59.874 44.000 12.84 4.66 0.00 3.95
2854 2934 5.710099 TGCAGGTACCTCTCATTTTAAAAGG 59.290 40.000 12.84 6.25 0.00 3.11
2855 2935 6.623767 GCTGCAGGTACCTCTCATTTTAAAAG 60.624 42.308 12.84 0.00 0.00 2.27
2856 2936 5.183140 GCTGCAGGTACCTCTCATTTTAAAA 59.817 40.000 12.84 2.51 0.00 1.52
2857 2937 4.700213 GCTGCAGGTACCTCTCATTTTAAA 59.300 41.667 12.84 0.00 0.00 1.52
2858 2938 4.261801 GCTGCAGGTACCTCTCATTTTAA 58.738 43.478 12.84 0.00 0.00 1.52
2859 2939 3.678806 CGCTGCAGGTACCTCTCATTTTA 60.679 47.826 12.84 0.00 0.00 1.52
2860 2940 2.716217 GCTGCAGGTACCTCTCATTTT 58.284 47.619 12.84 0.00 0.00 1.82
2861 2941 1.406069 CGCTGCAGGTACCTCTCATTT 60.406 52.381 12.84 0.00 0.00 2.32
2862 2942 0.176680 CGCTGCAGGTACCTCTCATT 59.823 55.000 12.84 0.00 0.00 2.57
2863 2943 0.972983 ACGCTGCAGGTACCTCTCAT 60.973 55.000 12.84 0.00 0.00 2.90
2864 2944 1.595993 GACGCTGCAGGTACCTCTCA 61.596 60.000 12.84 12.12 0.00 3.27
2865 2945 1.139947 GACGCTGCAGGTACCTCTC 59.860 63.158 12.84 7.63 0.00 3.20
2866 2946 2.701780 CGACGCTGCAGGTACCTCT 61.702 63.158 12.84 0.00 0.00 3.69
2867 2947 2.202623 CGACGCTGCAGGTACCTC 60.203 66.667 12.84 7.92 0.00 3.85
2868 2948 2.989824 ACGACGCTGCAGGTACCT 60.990 61.111 17.12 9.21 0.00 3.08
2869 2949 2.506438 GACGACGCTGCAGGTACC 60.506 66.667 17.12 2.73 0.00 3.34
2870 2950 2.506438 GGACGACGCTGCAGGTAC 60.506 66.667 17.12 1.03 0.00 3.34
2871 2951 2.486636 CTTGGACGACGCTGCAGGTA 62.487 60.000 17.12 0.00 0.00 3.08
2872 2952 3.865929 CTTGGACGACGCTGCAGGT 62.866 63.158 17.12 11.75 0.00 4.00
2873 2953 3.114616 CTTGGACGACGCTGCAGG 61.115 66.667 17.12 8.27 0.00 4.85
2874 2954 2.049156 TCTTGGACGACGCTGCAG 60.049 61.111 10.11 10.11 0.00 4.41
2875 2955 2.355837 GTCTTGGACGACGCTGCA 60.356 61.111 0.00 0.00 0.00 4.41
2876 2956 3.112709 GGTCTTGGACGACGCTGC 61.113 66.667 0.00 0.00 34.75 5.25
2877 2957 1.734477 CAGGTCTTGGACGACGCTG 60.734 63.158 0.00 0.00 34.75 5.18
2878 2958 2.651361 CAGGTCTTGGACGACGCT 59.349 61.111 0.00 0.00 34.75 5.07
2887 2967 3.965539 CTCGGCAGCCCAGGTCTTG 62.966 68.421 5.63 0.00 0.00 3.02
2888 2968 3.710722 CTCGGCAGCCCAGGTCTT 61.711 66.667 5.63 0.00 0.00 3.01
2890 2970 4.767255 CACTCGGCAGCCCAGGTC 62.767 72.222 11.23 0.00 0.00 3.85
2892 2972 4.767255 GACACTCGGCAGCCCAGG 62.767 72.222 11.23 2.21 0.00 4.45
2893 2973 3.655810 GAGACACTCGGCAGCCCAG 62.656 68.421 5.63 4.86 0.00 4.45
2894 2974 3.695606 GAGACACTCGGCAGCCCA 61.696 66.667 5.63 0.00 0.00 5.36
2895 2975 3.240134 TTGAGACACTCGGCAGCCC 62.240 63.158 5.63 0.00 32.35 5.19
2896 2976 1.739562 CTTGAGACACTCGGCAGCC 60.740 63.158 0.00 0.00 32.35 4.85
2897 2977 1.739562 CCTTGAGACACTCGGCAGC 60.740 63.158 0.00 0.00 32.35 5.25
2898 2978 0.668706 CACCTTGAGACACTCGGCAG 60.669 60.000 0.00 0.00 32.35 4.85
2899 2979 1.367471 CACCTTGAGACACTCGGCA 59.633 57.895 0.00 0.00 32.35 5.69
2900 2980 0.946221 CACACCTTGAGACACTCGGC 60.946 60.000 0.00 0.00 32.35 5.54
2901 2981 0.673985 TCACACCTTGAGACACTCGG 59.326 55.000 0.00 0.00 32.35 4.63
2902 2982 2.509052 TTCACACCTTGAGACACTCG 57.491 50.000 0.00 0.00 34.94 4.18
2903 2983 6.621596 GCATTATTTCACACCTTGAGACACTC 60.622 42.308 0.00 0.00 34.94 3.51
2904 2984 5.182001 GCATTATTTCACACCTTGAGACACT 59.818 40.000 0.00 0.00 34.94 3.55
2905 2985 5.393962 GCATTATTTCACACCTTGAGACAC 58.606 41.667 0.00 0.00 34.94 3.67
2906 2986 4.458989 GGCATTATTTCACACCTTGAGACA 59.541 41.667 0.00 0.00 34.94 3.41
2907 2987 4.437390 CGGCATTATTTCACACCTTGAGAC 60.437 45.833 0.00 0.00 34.94 3.36
2908 2988 3.689161 CGGCATTATTTCACACCTTGAGA 59.311 43.478 0.00 0.00 34.94 3.27
2909 2989 3.689161 TCGGCATTATTTCACACCTTGAG 59.311 43.478 0.00 0.00 34.94 3.02
2910 2990 3.438781 GTCGGCATTATTTCACACCTTGA 59.561 43.478 0.00 0.00 0.00 3.02
2911 2991 3.440173 AGTCGGCATTATTTCACACCTTG 59.560 43.478 0.00 0.00 0.00 3.61
2912 2992 3.440173 CAGTCGGCATTATTTCACACCTT 59.560 43.478 0.00 0.00 0.00 3.50
2984 3064 2.132686 ACAACACAGGTTAAGAGGGGT 58.867 47.619 0.00 0.00 34.87 4.95
2996 3076 5.958949 GCATAAAAAGCAAACAACAACACAG 59.041 36.000 0.00 0.00 0.00 3.66
2999 3079 5.871524 TCTGCATAAAAAGCAAACAACAACA 59.128 32.000 0.00 0.00 42.17 3.33
3000 3080 6.343226 TCTGCATAAAAAGCAAACAACAAC 57.657 33.333 0.00 0.00 42.17 3.32
3150 3233 1.812571 CAGCAACCCGAGCAGTAAATT 59.187 47.619 0.00 0.00 0.00 1.82
3241 3326 3.198853 CCCCAACAACCCTTTCTTTGAAA 59.801 43.478 0.00 0.00 0.00 2.69
3272 3357 8.911662 ACATGCGACAAATTTCTATTAAACAAC 58.088 29.630 0.00 0.00 0.00 3.32
3280 3365 7.609760 TTGTAGACATGCGACAAATTTCTAT 57.390 32.000 11.30 0.00 38.83 1.98
3346 3432 1.423541 TGGAAGGGTTGCATGTGTAGT 59.576 47.619 0.00 0.00 0.00 2.73
3403 3490 2.826725 GACAAGTAGGTAGTGAGCTGGT 59.173 50.000 0.00 0.00 34.50 4.00
3436 3523 5.708948 CATTATTTGTTGAAGCGGAAGGAA 58.291 37.500 0.00 0.00 0.00 3.36
3584 3672 6.697641 TTCACTTTGTCCCCTCTTATACTT 57.302 37.500 0.00 0.00 0.00 2.24
3681 3791 2.366266 ACACTAGTACTCACCCGCAAAA 59.634 45.455 0.00 0.00 0.00 2.44
3684 3794 1.624336 AACACTAGTACTCACCCGCA 58.376 50.000 0.00 0.00 0.00 5.69
3685 3795 3.243334 GGATAACACTAGTACTCACCCGC 60.243 52.174 0.00 0.00 0.00 6.13
3686 3796 3.949754 TGGATAACACTAGTACTCACCCG 59.050 47.826 0.00 0.00 0.00 5.28
3687 3797 7.504911 TCTTATGGATAACACTAGTACTCACCC 59.495 40.741 0.00 0.00 0.00 4.61
3688 3798 8.461249 TCTTATGGATAACACTAGTACTCACC 57.539 38.462 0.00 0.00 0.00 4.02
3790 3909 5.346181 AATCAGCTAGGTAGACAGAAACC 57.654 43.478 0.00 0.00 35.91 3.27
3801 3920 5.221925 TGAGGTTCAAGAAAATCAGCTAGGT 60.222 40.000 0.00 0.00 0.00 3.08
3802 3921 5.248640 TGAGGTTCAAGAAAATCAGCTAGG 58.751 41.667 0.00 0.00 0.00 3.02
3876 3995 9.919416 TCCATACAAGATATTTCCAAGAAATGA 57.081 29.630 11.82 0.00 0.00 2.57
4013 4317 9.979578 TTGTCAAGCAGAATAAAACATTGTTAT 57.020 25.926 1.76 0.00 0.00 1.89
4040 4344 4.325028 TTTCGTGTCCTTGTACAAGCTA 57.675 40.909 27.05 15.73 37.11 3.32
4110 4414 2.649531 TGAGGTTTCATCGTGGGTTT 57.350 45.000 0.00 0.00 0.00 3.27
4412 4716 7.389232 TGATCATCTTCAAGTGTCACATACTT 58.611 34.615 5.62 0.00 38.84 2.24
4413 4717 6.939622 TGATCATCTTCAAGTGTCACATACT 58.060 36.000 5.62 0.00 0.00 2.12
4759 5063 0.038166 ACTGTTATGGGCAGGGTGTG 59.962 55.000 0.00 0.00 38.22 3.82
4761 5065 2.799126 TTACTGTTATGGGCAGGGTG 57.201 50.000 0.00 0.00 38.22 4.61
4762 5066 3.783642 TGTATTACTGTTATGGGCAGGGT 59.216 43.478 0.00 0.00 38.22 4.34
4763 5067 4.431416 TGTATTACTGTTATGGGCAGGG 57.569 45.455 0.00 0.00 38.22 4.45
4764 5068 7.224297 ACTTATGTATTACTGTTATGGGCAGG 58.776 38.462 0.00 0.00 38.22 4.85
4767 5071 8.368668 AGAGACTTATGTATTACTGTTATGGGC 58.631 37.037 0.00 0.00 0.00 5.36
4770 5082 9.750125 TGCAGAGACTTATGTATTACTGTTATG 57.250 33.333 0.00 0.00 0.00 1.90
4772 5084 8.967918 AGTGCAGAGACTTATGTATTACTGTTA 58.032 33.333 0.00 0.00 0.00 2.41
4782 5098 1.834263 GGGGAGTGCAGAGACTTATGT 59.166 52.381 0.00 0.00 0.00 2.29
4898 5296 6.051717 CCCATGTGGAGATTCTAGTTTGTAG 58.948 44.000 0.00 0.00 37.39 2.74
4911 5309 1.281867 CAAAGTAGCCCCATGTGGAGA 59.718 52.381 0.00 0.00 37.39 3.71
5187 6186 4.631131 TGTAGATCAATATGGTTGGCTCG 58.369 43.478 0.00 0.00 0.00 5.03
5190 6189 3.503748 GGCTGTAGATCAATATGGTTGGC 59.496 47.826 0.00 0.00 0.00 4.52
5300 6304 5.179368 ACGGATCATAGGATGCAAATAAACG 59.821 40.000 9.58 0.00 41.53 3.60
5724 6733 1.765904 TGTACTGTCCACCAAGCTTGA 59.234 47.619 28.05 4.58 0.00 3.02
6048 7057 2.093235 AGCCACTGCCATAACTCTTCTC 60.093 50.000 0.00 0.00 38.69 2.87
6079 7088 7.404671 GGAACCTTTCCTGCAAGAATATTTA 57.595 36.000 0.00 0.00 46.57 1.40
6148 7158 8.637986 GTTCTCTGGATCTACTTACAATCATCT 58.362 37.037 0.00 0.00 0.00 2.90
6163 7176 6.287589 TCTAAAGGTGAAGTTCTCTGGATC 57.712 41.667 4.17 0.00 0.00 3.36
6257 7270 3.322254 AGTGTCCAGGACCATATCGATTC 59.678 47.826 17.59 0.00 0.00 2.52
6280 7297 4.184629 CTCCGGGATCTTAGTTTGTTCAG 58.815 47.826 0.00 0.00 0.00 3.02
6299 7316 0.035820 TGTATTCGTTGGTGGCCTCC 60.036 55.000 17.33 17.33 0.00 4.30
6512 7544 5.153950 AGAAGAAAGAGTGACGGCTAAAT 57.846 39.130 0.00 0.00 0.00 1.40
6673 7705 2.577700 AGTCCACTACAGGATAGCTCG 58.422 52.381 0.00 0.00 40.42 5.03
6681 7713 1.072331 ACCTTGCAAGTCCACTACAGG 59.928 52.381 24.35 8.88 0.00 4.00
6682 7714 2.224281 TGACCTTGCAAGTCCACTACAG 60.224 50.000 24.35 8.66 33.09 2.74
6683 7715 1.765904 TGACCTTGCAAGTCCACTACA 59.234 47.619 24.35 10.51 33.09 2.74
6684 7716 2.543777 TGACCTTGCAAGTCCACTAC 57.456 50.000 24.35 8.32 33.09 2.73
6685 7717 3.411446 CAATGACCTTGCAAGTCCACTA 58.589 45.455 24.35 7.31 33.09 2.74
6686 7718 2.233271 CAATGACCTTGCAAGTCCACT 58.767 47.619 24.35 9.30 33.09 4.00
6687 7719 2.712057 CAATGACCTTGCAAGTCCAC 57.288 50.000 24.35 12.71 33.09 4.02
6964 7996 2.425143 TGATCTGTTCAATCCCAGCC 57.575 50.000 0.00 0.00 0.00 4.85
7233 8265 6.503924 AGGATAAGCTCTCTAGACTCCTATCA 59.496 42.308 0.00 0.00 30.26 2.15
7379 8414 0.536460 TCATGATGATGCATGCGGCT 60.536 50.000 14.09 0.00 44.08 5.52
7529 8567 1.526887 ACACGCTCAGATGTTTGTTCG 59.473 47.619 0.00 0.00 0.00 3.95
7537 8575 0.817654 TGGAGGTACACGCTCAGATG 59.182 55.000 0.00 0.00 0.00 2.90
7561 8599 3.741388 GCTTCCGCATTTAGAGCTCCTTA 60.741 47.826 10.93 0.00 35.78 2.69
7600 8638 7.413475 TCTGAATTTCGTCTCTCTTTTTCTG 57.587 36.000 0.00 0.00 0.00 3.02
7635 8673 2.486472 ACCAGCTGGAAGAGACAATG 57.514 50.000 39.19 8.24 38.94 2.82
7818 8856 3.064900 AGGCAGACAGTTTTCCTCATC 57.935 47.619 0.00 0.00 0.00 2.92
7823 8861 2.223805 CCAACAAGGCAGACAGTTTTCC 60.224 50.000 0.00 0.00 0.00 3.13
7921 8959 5.998981 ACAAAAATGCCACATCACAAATCAT 59.001 32.000 0.00 0.00 0.00 2.45
7938 8976 7.911343 TGCGACATCAACGTATATACAAAAAT 58.089 30.769 13.22 0.00 0.00 1.82
7964 9002 1.171549 TGAGCATTGCCAGCGACAAA 61.172 50.000 4.70 0.00 37.01 2.83
7990 9028 3.316308 CCAACCTTCCACTTGACTTTCTG 59.684 47.826 0.00 0.00 0.00 3.02
7999 9037 0.555769 TCAAGCCCAACCTTCCACTT 59.444 50.000 0.00 0.00 0.00 3.16
8242 9283 6.486657 GGAGTACAAACATACATACCATGCAT 59.513 38.462 0.00 0.00 0.00 3.96
8395 11151 2.286833 TGTGCAAAAACTCGCTACACTC 59.713 45.455 0.00 0.00 0.00 3.51
8403 11159 3.923461 TGGACTTTTTGTGCAAAAACTCG 59.077 39.130 16.08 10.84 43.99 4.18
8456 11216 0.916809 AAGGTAAGGCTATGGCGGTT 59.083 50.000 0.00 0.00 39.81 4.44
8489 11249 1.452651 CGAGGCGGGAGGTACAGTA 60.453 63.158 0.00 0.00 0.00 2.74
8506 11268 8.160521 TCTGGAGATAGAATTTTACTCTCTCG 57.839 38.462 0.00 0.00 38.00 4.04
8535 11297 3.186283 TGGCCCGGTGGAATGTATATAT 58.814 45.455 0.00 0.00 0.00 0.86
8536 11298 2.622210 TGGCCCGGTGGAATGTATATA 58.378 47.619 0.00 0.00 0.00 0.86
8537 11299 1.440618 TGGCCCGGTGGAATGTATAT 58.559 50.000 0.00 0.00 0.00 0.86
8538 11300 1.214217 TTGGCCCGGTGGAATGTATA 58.786 50.000 0.00 0.00 0.00 1.47
8568 11342 5.178623 ACGCAACATTTTCTATGAACTTCGA 59.821 36.000 0.00 0.00 0.00 3.71
8587 11361 2.278466 CGCCAAAGTTGCACGCAA 60.278 55.556 0.00 0.00 0.00 4.85
8588 11362 3.513438 ACGCCAAAGTTGCACGCA 61.513 55.556 0.00 0.00 31.94 5.24
8589 11363 2.928313 TTCACGCCAAAGTTGCACGC 62.928 55.000 0.00 0.00 31.94 5.34
8590 11364 0.929824 CTTCACGCCAAAGTTGCACG 60.930 55.000 0.00 3.93 34.00 5.34
8591 11365 0.100503 ACTTCACGCCAAAGTTGCAC 59.899 50.000 0.00 0.00 33.19 4.57
8592 11366 0.814457 AACTTCACGCCAAAGTTGCA 59.186 45.000 8.96 0.00 43.46 4.08
8593 11367 1.202245 TGAACTTCACGCCAAAGTTGC 60.202 47.619 13.22 7.38 44.72 4.17
8594 11368 2.842208 TGAACTTCACGCCAAAGTTG 57.158 45.000 13.22 0.00 44.72 3.16
8595 11369 2.034558 CCATGAACTTCACGCCAAAGTT 59.965 45.455 9.39 9.39 46.74 2.66
8596 11370 1.608590 CCATGAACTTCACGCCAAAGT 59.391 47.619 0.00 0.00 38.59 2.66
8597 11371 1.879380 TCCATGAACTTCACGCCAAAG 59.121 47.619 0.00 0.00 0.00 2.77
8598 11372 1.974265 TCCATGAACTTCACGCCAAA 58.026 45.000 0.00 0.00 0.00 3.28
8599 11373 1.974265 TTCCATGAACTTCACGCCAA 58.026 45.000 0.00 0.00 0.00 4.52
8600 11374 1.974265 TTTCCATGAACTTCACGCCA 58.026 45.000 0.00 0.00 0.00 5.69
8601 11375 2.607038 GGTTTTCCATGAACTTCACGCC 60.607 50.000 0.00 0.00 40.31 5.68
8602 11376 2.034053 TGGTTTTCCATGAACTTCACGC 59.966 45.455 0.00 0.00 46.22 5.34
8603 11377 3.980646 TGGTTTTCCATGAACTTCACG 57.019 42.857 0.00 0.00 46.22 4.35
8622 11396 3.471495 GGAACCTTGTATTGAACGCTG 57.529 47.619 0.00 0.00 0.00 5.18
8755 11658 5.764131 TGCGTTAAATGTTTTCTCCGATTT 58.236 33.333 0.00 0.00 0.00 2.17
8881 11800 6.841229 TGGAGCTTCTTTCTAATCTGGATCTA 59.159 38.462 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.