Multiple sequence alignment - TraesCS5B01G052400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G052400 chr5B 100.000 3104 0 0 1 3104 57499701 57496598 0.000000e+00 5733.0
1 TraesCS5B01G052400 chr5B 82.092 1061 168 11 989 2043 40458454 40459498 0.000000e+00 887.0
2 TraesCS5B01G052400 chr5B 79.380 1193 198 27 976 2142 40775532 40776702 0.000000e+00 797.0
3 TraesCS5B01G052400 chr5B 80.037 1092 201 8 1008 2095 40556871 40557949 0.000000e+00 793.0
4 TraesCS5B01G052400 chr5A 92.732 1830 110 12 987 2795 43270341 43268514 0.000000e+00 2621.0
5 TraesCS5B01G052400 chr5A 92.224 1286 93 4 875 2159 42735907 42734628 0.000000e+00 1814.0
6 TraesCS5B01G052400 chr5A 94.980 498 24 1 1664 2160 43268359 43267862 0.000000e+00 780.0
7 TraesCS5B01G052400 chr5A 80.334 778 143 8 979 1751 32998966 32999738 5.770000e-162 580.0
8 TraesCS5B01G052400 chr5A 84.602 565 47 26 400 949 43270884 43270345 2.740000e-145 525.0
9 TraesCS5B01G052400 chr5A 88.837 215 18 2 2248 2460 42734626 42734416 3.070000e-65 259.0
10 TraesCS5B01G052400 chr5A 94.805 154 7 1 2848 3001 43268512 43268360 4.000000e-59 239.0
11 TraesCS5B01G052400 chr5A 93.103 58 2 1 2783 2838 591392469 591392526 1.980000e-12 84.2
12 TraesCS5B01G052400 chr5A 91.667 60 3 2 2792 2851 402656500 402656443 7.130000e-12 82.4
13 TraesCS5B01G052400 chr5A 88.406 69 6 1 2772 2838 526398962 526398894 7.130000e-12 82.4
14 TraesCS5B01G052400 chr5A 92.157 51 4 0 350 400 43283163 43283113 4.290000e-09 73.1
15 TraesCS5B01G052400 chr5D 91.348 1410 103 11 833 2235 54919727 54918330 0.000000e+00 1910.0
16 TraesCS5B01G052400 chr5D 81.099 1201 191 22 955 2142 42809142 42807965 0.000000e+00 928.0
17 TraesCS5B01G052400 chr5D 81.876 1098 182 8 1002 2095 43092087 43093171 0.000000e+00 909.0
18 TraesCS5B01G052400 chr5D 80.876 1187 192 15 976 2141 43135019 43136191 0.000000e+00 902.0
19 TraesCS5B01G052400 chr5D 92.561 578 22 5 2237 2795 54811545 54810970 0.000000e+00 809.0
20 TraesCS5B01G052400 chr5D 91.089 202 15 3 115 315 54931816 54931617 1.420000e-68 270.0
21 TraesCS5B01G052400 chr5D 95.122 164 6 2 2848 3011 54810968 54810807 1.100000e-64 257.0
22 TraesCS5B01G052400 chr5D 78.797 316 67 0 1778 2093 494685526 494685841 2.420000e-51 213.0
23 TraesCS5B01G052400 chr5D 96.330 109 4 0 2996 3104 54810791 54810683 2.460000e-41 180.0
24 TraesCS5B01G052400 chr5D 95.946 74 2 1 4 76 54932093 54932020 5.440000e-23 119.0
25 TraesCS5B01G052400 chr4D 98.113 53 1 0 2794 2846 379335677 379335729 3.300000e-15 93.5
26 TraesCS5B01G052400 chr4B 96.364 55 2 0 2794 2848 467148570 467148516 1.190000e-14 91.6
27 TraesCS5B01G052400 chr3A 96.429 56 1 1 2781 2836 102841788 102841734 1.190000e-14 91.6
28 TraesCS5B01G052400 chr1D 94.643 56 3 0 2783 2838 448238264 448238319 1.530000e-13 87.9
29 TraesCS5B01G052400 chr1D 97.959 49 1 0 2790 2838 18163525 18163477 5.520000e-13 86.1
30 TraesCS5B01G052400 chr1A 97.917 48 1 0 2794 2841 98517607 98517560 1.980000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G052400 chr5B 57496598 57499701 3103 True 5733.000000 5733 100.00000 1 3104 1 chr5B.!!$R1 3103
1 TraesCS5B01G052400 chr5B 40458454 40459498 1044 False 887.000000 887 82.09200 989 2043 1 chr5B.!!$F1 1054
2 TraesCS5B01G052400 chr5B 40775532 40776702 1170 False 797.000000 797 79.38000 976 2142 1 chr5B.!!$F3 1166
3 TraesCS5B01G052400 chr5B 40556871 40557949 1078 False 793.000000 793 80.03700 1008 2095 1 chr5B.!!$F2 1087
4 TraesCS5B01G052400 chr5A 43267862 43270884 3022 True 1041.250000 2621 91.77975 400 3001 4 chr5A.!!$R5 2601
5 TraesCS5B01G052400 chr5A 42734416 42735907 1491 True 1036.500000 1814 90.53050 875 2460 2 chr5A.!!$R4 1585
6 TraesCS5B01G052400 chr5A 32998966 32999738 772 False 580.000000 580 80.33400 979 1751 1 chr5A.!!$F1 772
7 TraesCS5B01G052400 chr5D 54918330 54919727 1397 True 1910.000000 1910 91.34800 833 2235 1 chr5D.!!$R2 1402
8 TraesCS5B01G052400 chr5D 42807965 42809142 1177 True 928.000000 928 81.09900 955 2142 1 chr5D.!!$R1 1187
9 TraesCS5B01G052400 chr5D 43092087 43093171 1084 False 909.000000 909 81.87600 1002 2095 1 chr5D.!!$F1 1093
10 TraesCS5B01G052400 chr5D 43135019 43136191 1172 False 902.000000 902 80.87600 976 2141 1 chr5D.!!$F2 1165
11 TraesCS5B01G052400 chr5D 54810683 54811545 862 True 415.333333 809 94.67100 2237 3104 3 chr5D.!!$R3 867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 404 0.029035 CTGCCGACGCTCGTTATACT 59.971 55.0 0.00 0.00 38.40 2.12 F
566 570 0.108804 CGACCCGCACTCACTATGTT 60.109 55.0 0.00 0.00 0.00 2.71 F
911 929 0.248702 GAGACTACAGTAGCTGCGGC 60.249 60.0 10.33 10.33 34.37 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2010 0.038159 ACGGAGAAGCAAGGAACTCG 60.038 55.0 0.0 0.0 38.49 4.18 R
2047 2111 2.232452 GCTCAACAGGCAAGAGTCTAGA 59.768 50.0 0.0 0.0 0.00 2.43 R
2726 2815 2.922740 TTACTTTCCGGTTGCTCAGT 57.077 45.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.592865 GATAGAGAAGAGGATTGGGGGT 58.407 50.000 0.00 0.00 0.00 4.95
22 23 1.589414 AGAGAAGAGGATTGGGGGTG 58.411 55.000 0.00 0.00 0.00 4.61
23 24 0.548510 GAGAAGAGGATTGGGGGTGG 59.451 60.000 0.00 0.00 0.00 4.61
24 25 0.178831 AGAAGAGGATTGGGGGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
25 26 1.082194 AGAAGAGGATTGGGGGTGGTA 59.918 52.381 0.00 0.00 0.00 3.25
26 27 1.490910 GAAGAGGATTGGGGGTGGTAG 59.509 57.143 0.00 0.00 0.00 3.18
27 28 0.988678 AGAGGATTGGGGGTGGTAGC 60.989 60.000 0.00 0.00 0.00 3.58
28 29 1.230149 AGGATTGGGGGTGGTAGCA 60.230 57.895 0.00 0.00 0.00 3.49
29 30 1.227383 GGATTGGGGGTGGTAGCAG 59.773 63.158 0.00 0.00 0.00 4.24
30 31 1.227383 GATTGGGGGTGGTAGCAGG 59.773 63.158 0.00 0.00 0.00 4.85
31 32 2.284515 GATTGGGGGTGGTAGCAGGG 62.285 65.000 0.00 0.00 0.00 4.45
34 35 3.339093 GGGGTGGTAGCAGGGCTT 61.339 66.667 0.00 0.00 40.44 4.35
35 36 2.272471 GGGTGGTAGCAGGGCTTC 59.728 66.667 0.00 0.00 40.44 3.86
36 37 2.301738 GGGTGGTAGCAGGGCTTCT 61.302 63.158 0.00 0.00 40.44 2.85
37 38 1.685820 GGTGGTAGCAGGGCTTCTT 59.314 57.895 0.00 0.00 40.44 2.52
38 39 0.038310 GGTGGTAGCAGGGCTTCTTT 59.962 55.000 0.00 0.00 40.44 2.52
39 40 1.547901 GGTGGTAGCAGGGCTTCTTTT 60.548 52.381 0.00 0.00 40.44 2.27
40 41 2.290705 GGTGGTAGCAGGGCTTCTTTTA 60.291 50.000 0.00 0.00 40.44 1.52
41 42 2.747989 GTGGTAGCAGGGCTTCTTTTAC 59.252 50.000 0.00 0.00 40.44 2.01
42 43 2.290705 TGGTAGCAGGGCTTCTTTTACC 60.291 50.000 0.00 0.00 40.44 2.85
43 44 2.007608 GTAGCAGGGCTTCTTTTACCG 58.992 52.381 0.00 0.00 40.44 4.02
44 45 0.322546 AGCAGGGCTTCTTTTACCGG 60.323 55.000 0.00 0.00 33.89 5.28
45 46 1.313091 GCAGGGCTTCTTTTACCGGG 61.313 60.000 6.32 0.00 0.00 5.73
46 47 0.037734 CAGGGCTTCTTTTACCGGGT 59.962 55.000 6.32 4.46 0.00 5.28
47 48 0.037734 AGGGCTTCTTTTACCGGGTG 59.962 55.000 10.66 0.00 0.00 4.61
48 49 0.963856 GGGCTTCTTTTACCGGGTGG 60.964 60.000 10.66 0.00 42.84 4.61
49 50 0.037160 GGCTTCTTTTACCGGGTGGA 59.963 55.000 10.66 0.00 39.21 4.02
50 51 1.546099 GGCTTCTTTTACCGGGTGGAA 60.546 52.381 10.66 8.01 39.21 3.53
51 52 2.232399 GCTTCTTTTACCGGGTGGAAA 58.768 47.619 10.66 9.81 39.21 3.13
52 53 2.624364 GCTTCTTTTACCGGGTGGAAAA 59.376 45.455 10.66 8.70 39.21 2.29
53 54 3.257375 GCTTCTTTTACCGGGTGGAAAAT 59.743 43.478 10.66 0.00 39.21 1.82
54 55 4.262292 GCTTCTTTTACCGGGTGGAAAATT 60.262 41.667 10.66 0.00 39.21 1.82
55 56 5.456548 TTCTTTTACCGGGTGGAAAATTC 57.543 39.130 10.66 0.00 39.21 2.17
56 57 3.502979 TCTTTTACCGGGTGGAAAATTCG 59.497 43.478 10.66 0.00 39.21 3.34
57 58 1.823797 TTACCGGGTGGAAAATTCGG 58.176 50.000 10.66 0.00 45.42 4.30
58 59 4.408378 CCGGGTGGAAAATTCGGT 57.592 55.556 0.00 0.00 37.49 4.69
59 60 2.648593 CCGGGTGGAAAATTCGGTT 58.351 52.632 0.00 0.00 37.49 4.44
60 61 1.823797 CCGGGTGGAAAATTCGGTTA 58.176 50.000 0.00 0.00 37.49 2.85
61 62 1.469703 CCGGGTGGAAAATTCGGTTAC 59.530 52.381 0.00 0.00 37.49 2.50
62 63 1.469703 CGGGTGGAAAATTCGGTTACC 59.530 52.381 0.00 0.00 0.00 2.85
63 64 2.516906 GGGTGGAAAATTCGGTTACCA 58.483 47.619 1.13 0.00 0.00 3.25
64 65 2.229543 GGGTGGAAAATTCGGTTACCAC 59.770 50.000 1.13 0.00 41.99 4.16
65 66 3.564235 GTGGAAAATTCGGTTACCACC 57.436 47.619 1.13 0.00 39.42 4.61
66 67 2.229543 GTGGAAAATTCGGTTACCACCC 59.770 50.000 1.13 0.00 40.52 4.61
67 68 1.469703 GGAAAATTCGGTTACCACCCG 59.530 52.381 1.13 0.00 46.83 5.28
68 69 1.469703 GAAAATTCGGTTACCACCCGG 59.530 52.381 1.13 0.00 45.51 5.73
70 71 1.274712 AATTCGGTTACCACCCGGTA 58.725 50.000 0.00 0.00 46.71 4.02
76 77 4.937193 TACCACCCGGTAATTGCG 57.063 55.556 0.00 0.00 46.71 4.85
77 78 1.981636 TACCACCCGGTAATTGCGT 59.018 52.632 0.00 0.00 46.71 5.24
78 79 0.324285 TACCACCCGGTAATTGCGTT 59.676 50.000 0.00 0.00 46.71 4.84
79 80 0.537828 ACCACCCGGTAATTGCGTTT 60.538 50.000 0.00 0.00 46.71 3.60
80 81 1.271271 ACCACCCGGTAATTGCGTTTA 60.271 47.619 0.00 0.00 46.71 2.01
81 82 1.399089 CCACCCGGTAATTGCGTTTAG 59.601 52.381 0.00 0.00 0.00 1.85
96 97 5.992489 GCGTTTAGCTACAATTTCCTTTG 57.008 39.130 0.00 0.00 44.04 2.77
97 98 4.323602 GCGTTTAGCTACAATTTCCTTTGC 59.676 41.667 0.00 0.00 44.04 3.68
98 99 5.457140 CGTTTAGCTACAATTTCCTTTGCA 58.543 37.500 0.00 0.00 0.00 4.08
99 100 5.569059 CGTTTAGCTACAATTTCCTTTGCAG 59.431 40.000 0.00 0.00 0.00 4.41
100 101 3.582714 AGCTACAATTTCCTTTGCAGC 57.417 42.857 1.98 1.98 43.39 5.25
101 102 2.892852 AGCTACAATTTCCTTTGCAGCA 59.107 40.909 10.93 0.00 44.79 4.41
102 103 3.321682 AGCTACAATTTCCTTTGCAGCAA 59.678 39.130 2.83 2.83 44.79 3.91
103 104 3.676646 GCTACAATTTCCTTTGCAGCAAG 59.323 43.478 8.12 2.95 42.85 4.01
104 105 3.825143 ACAATTTCCTTTGCAGCAAGT 57.175 38.095 8.12 0.00 0.00 3.16
105 106 4.141233 ACAATTTCCTTTGCAGCAAGTT 57.859 36.364 8.12 0.00 0.00 2.66
106 107 3.872771 ACAATTTCCTTTGCAGCAAGTTG 59.127 39.130 8.12 9.98 0.00 3.16
107 108 4.121317 CAATTTCCTTTGCAGCAAGTTGA 58.879 39.130 8.12 3.72 0.00 3.18
108 109 3.441496 TTTCCTTTGCAGCAAGTTGAG 57.559 42.857 8.12 2.68 0.00 3.02
109 110 1.321474 TCCTTTGCAGCAAGTTGAGG 58.679 50.000 15.15 15.15 0.00 3.86
110 111 0.316204 CCTTTGCAGCAAGTTGAGGG 59.684 55.000 13.89 5.64 0.00 4.30
111 112 1.321474 CTTTGCAGCAAGTTGAGGGA 58.679 50.000 8.12 0.00 0.00 4.20
112 113 1.268899 CTTTGCAGCAAGTTGAGGGAG 59.731 52.381 8.12 0.00 0.00 4.30
113 114 0.538057 TTGCAGCAAGTTGAGGGAGG 60.538 55.000 7.16 0.00 0.00 4.30
114 115 1.376466 GCAGCAAGTTGAGGGAGGA 59.624 57.895 7.16 0.00 0.00 3.71
115 116 0.034670 GCAGCAAGTTGAGGGAGGAT 60.035 55.000 7.16 0.00 0.00 3.24
116 117 1.747709 CAGCAAGTTGAGGGAGGATG 58.252 55.000 7.16 0.00 0.00 3.51
117 118 0.034670 AGCAAGTTGAGGGAGGATGC 60.035 55.000 7.16 0.00 0.00 3.91
118 119 0.322816 GCAAGTTGAGGGAGGATGCA 60.323 55.000 7.16 0.00 32.80 3.96
119 120 1.887956 GCAAGTTGAGGGAGGATGCAA 60.888 52.381 7.16 0.00 32.80 4.08
120 121 2.517959 CAAGTTGAGGGAGGATGCAAA 58.482 47.619 0.00 0.00 0.00 3.68
121 122 2.892852 CAAGTTGAGGGAGGATGCAAAA 59.107 45.455 0.00 0.00 0.00 2.44
122 123 2.800250 AGTTGAGGGAGGATGCAAAAG 58.200 47.619 0.00 0.00 0.00 2.27
123 124 2.108952 AGTTGAGGGAGGATGCAAAAGT 59.891 45.455 0.00 0.00 0.00 2.66
124 125 2.893489 GTTGAGGGAGGATGCAAAAGTT 59.107 45.455 0.00 0.00 0.00 2.66
125 126 3.243359 TGAGGGAGGATGCAAAAGTTT 57.757 42.857 0.00 0.00 0.00 2.66
126 127 4.380843 TGAGGGAGGATGCAAAAGTTTA 57.619 40.909 0.00 0.00 0.00 2.01
127 128 4.735369 TGAGGGAGGATGCAAAAGTTTAA 58.265 39.130 0.00 0.00 0.00 1.52
128 129 5.144100 TGAGGGAGGATGCAAAAGTTTAAA 58.856 37.500 0.00 0.00 0.00 1.52
129 130 5.600484 TGAGGGAGGATGCAAAAGTTTAAAA 59.400 36.000 0.00 0.00 0.00 1.52
130 131 5.853936 AGGGAGGATGCAAAAGTTTAAAAC 58.146 37.500 0.00 0.00 0.00 2.43
131 132 5.365314 AGGGAGGATGCAAAAGTTTAAAACA 59.635 36.000 0.00 0.00 0.00 2.83
132 133 5.465390 GGGAGGATGCAAAAGTTTAAAACAC 59.535 40.000 0.00 0.00 0.00 3.32
133 134 6.280643 GGAGGATGCAAAAGTTTAAAACACT 58.719 36.000 0.00 0.00 0.00 3.55
134 135 6.420903 GGAGGATGCAAAAGTTTAAAACACTC 59.579 38.462 0.00 0.00 0.00 3.51
135 136 7.112452 AGGATGCAAAAGTTTAAAACACTCT 57.888 32.000 0.00 0.00 0.00 3.24
136 137 8.232913 AGGATGCAAAAGTTTAAAACACTCTA 57.767 30.769 0.00 0.00 0.00 2.43
137 138 8.691797 AGGATGCAAAAGTTTAAAACACTCTAA 58.308 29.630 0.00 0.00 0.00 2.10
138 139 9.308318 GGATGCAAAAGTTTAAAACACTCTAAA 57.692 29.630 0.00 0.00 0.00 1.85
141 142 9.477484 TGCAAAAGTTTAAAACACTCTAAAACA 57.523 25.926 0.00 0.00 33.52 2.83
149 150 8.934507 TTAAAACACTCTAAAACAAATGTGGG 57.065 30.769 0.00 0.00 0.00 4.61
150 151 6.783708 AAACACTCTAAAACAAATGTGGGA 57.216 33.333 0.00 0.00 0.00 4.37
151 152 6.391227 AACACTCTAAAACAAATGTGGGAG 57.609 37.500 0.00 0.00 0.00 4.30
152 153 4.278419 ACACTCTAAAACAAATGTGGGAGC 59.722 41.667 0.00 0.00 0.00 4.70
153 154 4.278170 CACTCTAAAACAAATGTGGGAGCA 59.722 41.667 0.00 0.00 0.00 4.26
154 155 4.892934 ACTCTAAAACAAATGTGGGAGCAA 59.107 37.500 0.00 0.00 0.00 3.91
155 156 5.195001 TCTAAAACAAATGTGGGAGCAAC 57.805 39.130 0.00 0.00 0.00 4.17
156 157 2.908688 AAACAAATGTGGGAGCAACC 57.091 45.000 0.00 0.00 38.08 3.77
157 158 1.786937 AACAAATGTGGGAGCAACCA 58.213 45.000 0.00 0.00 41.20 3.67
158 159 1.331214 ACAAATGTGGGAGCAACCAG 58.669 50.000 0.00 0.00 42.20 4.00
159 160 1.331214 CAAATGTGGGAGCAACCAGT 58.669 50.000 0.00 0.00 42.20 4.00
160 161 2.158534 ACAAATGTGGGAGCAACCAGTA 60.159 45.455 0.00 0.00 42.20 2.74
161 162 2.489329 CAAATGTGGGAGCAACCAGTAG 59.511 50.000 0.00 0.00 42.20 2.57
162 163 1.362224 ATGTGGGAGCAACCAGTAGT 58.638 50.000 0.00 0.00 42.20 2.73
163 164 0.685097 TGTGGGAGCAACCAGTAGTC 59.315 55.000 0.00 0.00 42.20 2.59
164 165 0.389948 GTGGGAGCAACCAGTAGTCG 60.390 60.000 0.00 0.00 42.20 4.18
165 166 0.541063 TGGGAGCAACCAGTAGTCGA 60.541 55.000 0.00 0.00 41.20 4.20
166 167 0.606604 GGGAGCAACCAGTAGTCGAA 59.393 55.000 0.00 0.00 41.20 3.71
167 168 1.672145 GGGAGCAACCAGTAGTCGAAC 60.672 57.143 0.00 0.00 41.20 3.95
168 169 1.672145 GGAGCAACCAGTAGTCGAACC 60.672 57.143 0.00 0.00 38.79 3.62
169 170 0.038526 AGCAACCAGTAGTCGAACCG 60.039 55.000 0.00 0.00 0.00 4.44
170 171 1.623973 GCAACCAGTAGTCGAACCGC 61.624 60.000 0.00 0.00 0.00 5.68
171 172 1.012486 CAACCAGTAGTCGAACCGCC 61.012 60.000 0.00 0.00 0.00 6.13
172 173 2.202570 CCAGTAGTCGAACCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
173 174 2.693762 CCAGTAGTCGAACCGCCGA 61.694 63.158 0.00 0.00 36.06 5.54
179 180 2.259204 TCGAACCGCCGACGAAAT 59.741 55.556 0.00 0.00 43.93 2.17
180 181 1.505807 TCGAACCGCCGACGAAATA 59.494 52.632 0.00 0.00 43.93 1.40
181 182 0.523968 TCGAACCGCCGACGAAATAG 60.524 55.000 0.00 0.00 43.93 1.73
182 183 1.634753 GAACCGCCGACGAAATAGC 59.365 57.895 0.00 0.00 43.93 2.97
183 184 1.079681 AACCGCCGACGAAATAGCA 60.080 52.632 0.00 0.00 43.93 3.49
184 185 1.082117 AACCGCCGACGAAATAGCAG 61.082 55.000 0.00 0.00 43.93 4.24
185 186 2.237751 CCGCCGACGAAATAGCAGG 61.238 63.158 0.00 0.00 43.93 4.85
186 187 2.871427 CGCCGACGAAATAGCAGGC 61.871 63.158 0.00 0.00 43.93 4.85
187 188 1.813753 GCCGACGAAATAGCAGGCA 60.814 57.895 0.00 0.00 43.65 4.75
188 189 1.766143 GCCGACGAAATAGCAGGCAG 61.766 60.000 0.00 0.00 43.65 4.85
189 190 1.638467 CGACGAAATAGCAGGCAGC 59.362 57.895 0.00 0.00 46.19 5.25
218 219 2.086869 CTGAACAGCCACCACATTAGG 58.913 52.381 0.00 0.00 0.00 2.69
219 220 1.702401 TGAACAGCCACCACATTAGGA 59.298 47.619 0.00 0.00 0.00 2.94
220 221 2.290260 TGAACAGCCACCACATTAGGAG 60.290 50.000 0.00 0.00 0.00 3.69
221 222 1.656587 ACAGCCACCACATTAGGAGA 58.343 50.000 0.00 0.00 0.00 3.71
222 223 2.200081 ACAGCCACCACATTAGGAGAT 58.800 47.619 0.00 0.00 0.00 2.75
223 224 2.092753 ACAGCCACCACATTAGGAGATG 60.093 50.000 0.00 0.00 0.00 2.90
224 225 1.492176 AGCCACCACATTAGGAGATGG 59.508 52.381 0.00 0.00 38.26 3.51
225 226 1.212935 GCCACCACATTAGGAGATGGT 59.787 52.381 0.00 0.00 46.53 3.55
226 227 2.357154 GCCACCACATTAGGAGATGGTT 60.357 50.000 0.00 0.00 42.98 3.67
227 228 3.282021 CCACCACATTAGGAGATGGTTG 58.718 50.000 0.00 0.00 42.98 3.77
228 229 3.282021 CACCACATTAGGAGATGGTTGG 58.718 50.000 0.00 0.00 42.98 3.77
229 230 2.242196 ACCACATTAGGAGATGGTTGGG 59.758 50.000 0.00 0.00 42.98 4.12
230 231 2.509548 CCACATTAGGAGATGGTTGGGA 59.490 50.000 0.00 0.00 0.00 4.37
231 232 3.139025 CCACATTAGGAGATGGTTGGGAT 59.861 47.826 0.00 0.00 0.00 3.85
232 233 4.139786 CACATTAGGAGATGGTTGGGATG 58.860 47.826 0.00 0.00 0.00 3.51
233 234 3.788142 ACATTAGGAGATGGTTGGGATGT 59.212 43.478 0.00 0.00 0.00 3.06
234 235 4.975147 ACATTAGGAGATGGTTGGGATGTA 59.025 41.667 0.00 0.00 0.00 2.29
235 236 5.612688 ACATTAGGAGATGGTTGGGATGTAT 59.387 40.000 0.00 0.00 0.00 2.29
236 237 6.792473 ACATTAGGAGATGGTTGGGATGTATA 59.208 38.462 0.00 0.00 0.00 1.47
237 238 7.294720 ACATTAGGAGATGGTTGGGATGTATAA 59.705 37.037 0.00 0.00 0.00 0.98
238 239 7.699709 TTAGGAGATGGTTGGGATGTATAAA 57.300 36.000 0.00 0.00 0.00 1.40
239 240 6.192970 AGGAGATGGTTGGGATGTATAAAG 57.807 41.667 0.00 0.00 0.00 1.85
240 241 5.073691 AGGAGATGGTTGGGATGTATAAAGG 59.926 44.000 0.00 0.00 0.00 3.11
241 242 5.163088 GGAGATGGTTGGGATGTATAAAGGT 60.163 44.000 0.00 0.00 0.00 3.50
242 243 6.341408 AGATGGTTGGGATGTATAAAGGTT 57.659 37.500 0.00 0.00 0.00 3.50
243 244 7.420913 GGAGATGGTTGGGATGTATAAAGGTTA 60.421 40.741 0.00 0.00 0.00 2.85
244 245 7.878495 AGATGGTTGGGATGTATAAAGGTTAA 58.122 34.615 0.00 0.00 0.00 2.01
245 246 8.340757 AGATGGTTGGGATGTATAAAGGTTAAA 58.659 33.333 0.00 0.00 0.00 1.52
246 247 9.143155 GATGGTTGGGATGTATAAAGGTTAAAT 57.857 33.333 0.00 0.00 0.00 1.40
248 249 9.411189 TGGTTGGGATGTATAAAGGTTAAATAC 57.589 33.333 0.00 0.00 0.00 1.89
249 250 9.636789 GGTTGGGATGTATAAAGGTTAAATACT 57.363 33.333 0.00 0.00 0.00 2.12
313 314 9.120422 GTTTGAAATATTTCGAACGGTATTTGT 57.880 29.630 31.43 0.00 46.00 2.83
314 315 8.883789 TTGAAATATTTCGAACGGTATTTGTC 57.116 30.769 20.45 11.28 40.01 3.18
315 316 7.465989 TGAAATATTTCGAACGGTATTTGTCC 58.534 34.615 20.45 10.68 40.01 4.02
316 317 6.988622 AATATTTCGAACGGTATTTGTCCA 57.011 33.333 0.00 0.00 0.00 4.02
317 318 6.988622 ATATTTCGAACGGTATTTGTCCAA 57.011 33.333 0.00 0.00 0.00 3.53
318 319 5.692613 ATTTCGAACGGTATTTGTCCAAA 57.307 34.783 0.00 0.00 34.46 3.28
319 320 5.496133 TTTCGAACGGTATTTGTCCAAAA 57.504 34.783 0.00 0.00 33.56 2.44
320 321 5.692613 TTCGAACGGTATTTGTCCAAAAT 57.307 34.783 0.00 0.00 33.56 1.82
321 322 5.037015 TCGAACGGTATTTGTCCAAAATG 57.963 39.130 0.00 0.00 33.56 2.32
322 323 4.083217 TCGAACGGTATTTGTCCAAAATGG 60.083 41.667 0.00 0.00 39.43 3.16
323 324 4.320641 CGAACGGTATTTGTCCAAAATGGT 60.321 41.667 0.00 0.00 39.03 3.55
324 325 5.534407 GAACGGTATTTGTCCAAAATGGTT 58.466 37.500 0.00 0.33 39.03 3.67
325 326 4.877282 ACGGTATTTGTCCAAAATGGTTG 58.123 39.130 0.00 0.00 39.03 3.77
326 327 4.241681 CGGTATTTGTCCAAAATGGTTGG 58.758 43.478 0.00 0.00 39.03 3.77
327 328 4.021894 CGGTATTTGTCCAAAATGGTTGGA 60.022 41.667 3.67 3.67 45.61 3.53
336 337 6.985653 TCCAAAATGGTTGGAGATGTAAAA 57.014 33.333 3.67 0.00 43.17 1.52
337 338 7.366847 TCCAAAATGGTTGGAGATGTAAAAA 57.633 32.000 3.67 0.00 43.17 1.94
338 339 7.213678 TCCAAAATGGTTGGAGATGTAAAAAC 58.786 34.615 3.67 0.00 43.17 2.43
339 340 6.145371 CCAAAATGGTTGGAGATGTAAAAACG 59.855 38.462 0.00 0.00 42.06 3.60
340 341 6.642707 AAATGGTTGGAGATGTAAAAACGA 57.357 33.333 0.00 0.00 0.00 3.85
341 342 5.880054 ATGGTTGGAGATGTAAAAACGAG 57.120 39.130 0.00 0.00 0.00 4.18
342 343 3.500680 TGGTTGGAGATGTAAAAACGAGC 59.499 43.478 0.00 0.00 0.00 5.03
343 344 3.751698 GGTTGGAGATGTAAAAACGAGCT 59.248 43.478 0.00 0.00 0.00 4.09
344 345 4.215613 GGTTGGAGATGTAAAAACGAGCTT 59.784 41.667 0.00 0.00 0.00 3.74
345 346 5.383130 GTTGGAGATGTAAAAACGAGCTTC 58.617 41.667 0.00 0.00 0.00 3.86
346 347 4.637276 TGGAGATGTAAAAACGAGCTTCA 58.363 39.130 0.00 0.00 0.00 3.02
347 348 4.451096 TGGAGATGTAAAAACGAGCTTCAC 59.549 41.667 0.00 0.00 0.00 3.18
348 349 4.142881 GGAGATGTAAAAACGAGCTTCACC 60.143 45.833 0.00 0.00 0.00 4.02
349 350 4.642429 AGATGTAAAAACGAGCTTCACCT 58.358 39.130 0.00 0.00 0.00 4.00
350 351 4.691216 AGATGTAAAAACGAGCTTCACCTC 59.309 41.667 0.00 0.00 0.00 3.85
351 352 3.799366 TGTAAAAACGAGCTTCACCTCA 58.201 40.909 0.00 0.00 0.00 3.86
352 353 3.807622 TGTAAAAACGAGCTTCACCTCAG 59.192 43.478 0.00 0.00 0.00 3.35
353 354 1.230324 AAAACGAGCTTCACCTCAGC 58.770 50.000 0.00 0.00 37.56 4.26
354 355 0.106708 AAACGAGCTTCACCTCAGCA 59.893 50.000 0.00 0.00 39.99 4.41
355 356 0.322975 AACGAGCTTCACCTCAGCAT 59.677 50.000 0.00 0.00 39.99 3.79
356 357 0.322975 ACGAGCTTCACCTCAGCATT 59.677 50.000 0.00 0.00 39.99 3.56
357 358 0.725686 CGAGCTTCACCTCAGCATTG 59.274 55.000 0.00 0.00 39.99 2.82
358 359 1.673923 CGAGCTTCACCTCAGCATTGA 60.674 52.381 0.00 0.00 39.99 2.57
359 360 2.430465 GAGCTTCACCTCAGCATTGAA 58.570 47.619 0.00 0.00 39.99 2.69
360 361 2.157738 AGCTTCACCTCAGCATTGAAC 58.842 47.619 0.00 0.00 39.99 3.18
361 362 1.135859 GCTTCACCTCAGCATTGAACG 60.136 52.381 0.00 0.00 37.22 3.95
362 363 1.466167 CTTCACCTCAGCATTGAACGG 59.534 52.381 0.00 0.00 31.69 4.44
363 364 0.684535 TCACCTCAGCATTGAACGGA 59.315 50.000 0.00 0.00 31.69 4.69
364 365 1.081892 CACCTCAGCATTGAACGGAG 58.918 55.000 0.00 0.00 31.69 4.63
365 366 2.772739 CCTCAGCATTGAACGGAGG 58.227 57.895 0.00 0.00 41.95 4.30
366 367 3.840831 CTCAGCATTGAACGGAGGA 57.159 52.632 0.00 0.00 31.69 3.71
367 368 1.649664 CTCAGCATTGAACGGAGGAG 58.350 55.000 0.00 0.00 31.69 3.69
368 369 0.250234 TCAGCATTGAACGGAGGAGG 59.750 55.000 0.00 0.00 0.00 4.30
369 370 0.250234 CAGCATTGAACGGAGGAGGA 59.750 55.000 0.00 0.00 0.00 3.71
370 371 0.539051 AGCATTGAACGGAGGAGGAG 59.461 55.000 0.00 0.00 0.00 3.69
371 372 1.092345 GCATTGAACGGAGGAGGAGC 61.092 60.000 0.00 0.00 0.00 4.70
372 373 0.462759 CATTGAACGGAGGAGGAGCC 60.463 60.000 0.00 0.00 0.00 4.70
378 379 2.043852 GGAGGAGGAGCCGAGTGA 60.044 66.667 0.00 0.00 43.43 3.41
379 380 1.682684 GGAGGAGGAGCCGAGTGAA 60.683 63.158 0.00 0.00 43.43 3.18
380 381 1.513622 GAGGAGGAGCCGAGTGAAC 59.486 63.158 0.00 0.00 43.43 3.18
381 382 0.968393 GAGGAGGAGCCGAGTGAACT 60.968 60.000 0.00 0.00 43.43 3.01
382 383 1.216710 GGAGGAGCCGAGTGAACTG 59.783 63.158 0.00 0.00 0.00 3.16
383 384 1.216710 GAGGAGCCGAGTGAACTGG 59.783 63.158 0.00 0.00 0.00 4.00
387 388 3.426568 GCCGAGTGAACTGGCTGC 61.427 66.667 13.41 0.00 45.40 5.25
388 389 2.743928 CCGAGTGAACTGGCTGCC 60.744 66.667 12.87 12.87 0.00 4.85
389 390 3.114616 CGAGTGAACTGGCTGCCG 61.115 66.667 14.98 11.36 0.00 5.69
390 391 2.343758 GAGTGAACTGGCTGCCGA 59.656 61.111 14.98 2.35 0.00 5.54
391 392 2.029844 GAGTGAACTGGCTGCCGAC 61.030 63.158 14.98 5.43 0.00 4.79
392 393 3.414700 GTGAACTGGCTGCCGACG 61.415 66.667 14.98 7.53 0.00 5.12
399 400 4.789075 GGCTGCCGACGCTCGTTA 62.789 66.667 1.35 0.00 38.40 3.18
400 401 2.582498 GCTGCCGACGCTCGTTAT 60.582 61.111 0.00 0.00 38.40 1.89
401 402 1.298863 GCTGCCGACGCTCGTTATA 60.299 57.895 0.00 0.00 38.40 0.98
402 403 1.538117 GCTGCCGACGCTCGTTATAC 61.538 60.000 0.00 0.00 38.40 1.47
403 404 0.029035 CTGCCGACGCTCGTTATACT 59.971 55.000 0.00 0.00 38.40 2.12
404 405 1.262417 CTGCCGACGCTCGTTATACTA 59.738 52.381 0.00 0.00 38.40 1.82
405 406 1.875514 TGCCGACGCTCGTTATACTAT 59.124 47.619 0.00 0.00 38.40 2.12
414 415 7.356235 CGACGCTCGTTATACTATACAAAACAG 60.356 40.741 0.00 0.00 34.72 3.16
436 437 7.429633 ACAGAAGATATTATTCTCGACACTGG 58.570 38.462 0.00 0.00 34.80 4.00
449 450 4.393155 ACTGGCGGCGCTCATCAA 62.393 61.111 32.30 9.54 0.00 2.57
452 453 1.153269 TGGCGGCGCTCATCAATAA 60.153 52.632 32.30 3.41 0.00 1.40
456 457 2.111756 GCGGCGCTCATCAATAAAAAG 58.888 47.619 26.86 0.00 0.00 2.27
460 461 4.498009 CGGCGCTCATCAATAAAAAGGATT 60.498 41.667 7.64 0.00 0.00 3.01
461 462 5.277779 CGGCGCTCATCAATAAAAAGGATTA 60.278 40.000 7.64 0.00 0.00 1.75
462 463 5.915196 GGCGCTCATCAATAAAAAGGATTAC 59.085 40.000 7.64 0.00 0.00 1.89
463 464 6.459573 GGCGCTCATCAATAAAAAGGATTACA 60.460 38.462 7.64 0.00 0.00 2.41
465 466 7.649306 GCGCTCATCAATAAAAAGGATTACATT 59.351 33.333 0.00 0.00 0.00 2.71
466 467 9.173939 CGCTCATCAATAAAAAGGATTACATTC 57.826 33.333 0.00 0.00 0.00 2.67
525 529 1.639298 AATCTTCTCAACGCTGCCGC 61.639 55.000 0.00 0.00 38.22 6.53
526 530 3.793144 CTTCTCAACGCTGCCGCC 61.793 66.667 0.00 0.00 38.22 6.13
554 558 2.262303 ATCGATCTCTCCGACCCGC 61.262 63.158 0.00 0.00 38.97 6.13
557 561 2.043852 ATCTCTCCGACCCGCACT 60.044 61.111 0.00 0.00 0.00 4.40
558 562 2.065906 GATCTCTCCGACCCGCACTC 62.066 65.000 0.00 0.00 0.00 3.51
559 563 2.838748 ATCTCTCCGACCCGCACTCA 62.839 60.000 0.00 0.00 0.00 3.41
564 568 1.226974 CCGACCCGCACTCACTATG 60.227 63.158 0.00 0.00 0.00 2.23
565 569 1.511305 CGACCCGCACTCACTATGT 59.489 57.895 0.00 0.00 0.00 2.29
566 570 0.108804 CGACCCGCACTCACTATGTT 60.109 55.000 0.00 0.00 0.00 2.71
567 571 1.133598 CGACCCGCACTCACTATGTTA 59.866 52.381 0.00 0.00 0.00 2.41
568 572 2.794981 CGACCCGCACTCACTATGTTAG 60.795 54.545 0.00 0.00 0.00 2.34
569 573 1.480954 ACCCGCACTCACTATGTTAGG 59.519 52.381 0.00 0.00 0.00 2.69
570 574 1.754803 CCCGCACTCACTATGTTAGGA 59.245 52.381 0.00 0.00 0.00 2.94
571 575 2.223829 CCCGCACTCACTATGTTAGGAG 60.224 54.545 0.00 0.00 32.68 3.69
581 585 8.812972 ACTCACTATGTTAGGAGTACAAATTCA 58.187 33.333 0.00 0.00 35.77 2.57
585 589 7.974501 ACTATGTTAGGAGTACAAATTCAGTCG 59.025 37.037 0.00 0.00 0.00 4.18
587 591 3.963428 AGGAGTACAAATTCAGTCGCT 57.037 42.857 0.00 0.00 0.00 4.93
588 592 4.273148 AGGAGTACAAATTCAGTCGCTT 57.727 40.909 0.00 0.00 0.00 4.68
598 603 0.532573 TCAGTCGCTTCCACATCTCC 59.467 55.000 0.00 0.00 0.00 3.71
606 611 1.054406 TTCCACATCTCCCCCGATCC 61.054 60.000 0.00 0.00 0.00 3.36
648 653 4.115199 CCCCGAGCCCCCTCTTTG 62.115 72.222 0.00 0.00 35.90 2.77
652 657 1.377333 CGAGCCCCCTCTTTGGTTC 60.377 63.158 0.00 0.00 35.90 3.62
675 688 2.651361 CTTCACCCGCGTCTCACT 59.349 61.111 4.92 0.00 0.00 3.41
677 690 2.421877 CTTCACCCGCGTCTCACTGT 62.422 60.000 4.92 0.00 0.00 3.55
685 698 2.048127 GTCTCACTGTGGGTCGCC 60.048 66.667 7.67 0.00 0.00 5.54
686 699 2.203640 TCTCACTGTGGGTCGCCT 60.204 61.111 7.67 0.00 0.00 5.52
688 701 3.633094 CTCACTGTGGGTCGCCTCG 62.633 68.421 8.11 0.00 0.00 4.63
701 714 4.379243 CCTCGCAGCCGACACCTT 62.379 66.667 0.00 0.00 38.82 3.50
750 763 1.068921 GCTCCTTCTCATCGGCTCC 59.931 63.158 0.00 0.00 0.00 4.70
778 792 4.292178 GCCGATCGCCTCCTCCTG 62.292 72.222 10.32 0.00 0.00 3.86
792 806 4.463879 CCTGGCCGCTCAGTCCAG 62.464 72.222 0.00 0.00 45.24 3.86
793 807 3.699894 CTGGCCGCTCAGTCCAGT 61.700 66.667 0.00 0.00 41.76 4.00
794 808 3.655810 CTGGCCGCTCAGTCCAGTC 62.656 68.421 0.00 0.00 41.76 3.51
795 809 4.459089 GGCCGCTCAGTCCAGTCC 62.459 72.222 0.00 0.00 0.00 3.85
796 810 4.459089 GCCGCTCAGTCCAGTCCC 62.459 72.222 0.00 0.00 0.00 4.46
843 858 8.203485 AGTTTAGTTTCATGAAAAATGGCAGAA 58.797 29.630 22.07 5.90 31.33 3.02
857 872 1.787847 CAGAACACGGGAATGCGAC 59.212 57.895 0.00 0.00 0.00 5.19
858 873 0.948623 CAGAACACGGGAATGCGACA 60.949 55.000 0.00 0.00 0.00 4.35
901 919 4.156915 CGTGAAGGTAAACGAGACTACAG 58.843 47.826 0.00 0.00 42.32 2.74
905 923 4.961435 AGGTAAACGAGACTACAGTAGC 57.039 45.455 7.57 1.02 0.00 3.58
907 925 4.395542 AGGTAAACGAGACTACAGTAGCTG 59.604 45.833 7.57 0.00 37.52 4.24
911 929 0.248702 GAGACTACAGTAGCTGCGGC 60.249 60.000 10.33 10.33 34.37 6.53
965 983 0.908198 AGAGGCAGTCATCTTCCACC 59.092 55.000 0.00 0.00 29.44 4.61
966 984 0.460987 GAGGCAGTCATCTTCCACCG 60.461 60.000 0.00 0.00 29.44 4.94
1038 1065 1.739929 CACGTCCGCCATTGTAGCA 60.740 57.895 0.00 0.00 0.00 3.49
1140 1167 3.368248 CACATCCATCCCTTTCATGGTT 58.632 45.455 0.00 0.00 41.59 3.67
1296 1353 2.358737 GGTGAACCAGTGCCTCCG 60.359 66.667 0.00 0.00 35.64 4.63
1356 1416 0.526211 GTTCAGATTGGGGTTTCGGC 59.474 55.000 0.00 0.00 0.00 5.54
1554 1617 2.435059 GGAGCAGACGTGGCCTTC 60.435 66.667 3.32 0.00 0.00 3.46
1697 1760 5.664457 TGATATAGAAGCAGGTGTGTTCAG 58.336 41.667 0.00 0.00 0.00 3.02
1800 1863 0.826715 TAGTGACAGCTGGCCATCTC 59.173 55.000 19.23 4.82 0.00 2.75
1821 1884 2.563179 CCTTGTAGCGGCAGATAGGTAT 59.437 50.000 1.45 0.00 0.00 2.73
1863 1926 5.718146 CTGATATGCGAGGAGATATTGTGT 58.282 41.667 0.00 0.00 0.00 3.72
1895 1958 1.803334 TCCGACATGGTTGCAACTAC 58.197 50.000 27.64 13.64 39.52 2.73
1896 1959 0.802494 CCGACATGGTTGCAACTACC 59.198 55.000 27.64 14.20 36.17 3.18
1911 1974 3.306472 ACTACCTTGGTTTTGGCTGAA 57.694 42.857 0.00 0.00 0.00 3.02
1947 2010 1.447945 GACTCAAGGAGGCTTGCTTC 58.552 55.000 0.00 0.00 34.31 3.86
2109 2177 2.572191 TCAGGGACATTTAGTACGCG 57.428 50.000 3.53 3.53 0.00 6.01
2112 2180 1.206371 AGGGACATTTAGTACGCGCTT 59.794 47.619 5.73 0.00 0.00 4.68
2115 2183 3.181397 GGACATTTAGTACGCGCTTACA 58.819 45.455 23.89 9.02 0.00 2.41
2167 2236 7.981475 AGTAAGCTTAAAATCTACTCCCTCT 57.019 36.000 7.99 0.00 0.00 3.69
2171 2240 7.021998 AGCTTAAAATCTACTCCCTCTGTTT 57.978 36.000 0.00 0.00 0.00 2.83
2219 2288 8.194769 AGTTCAATTTTAAACTAACACCACCAG 58.805 33.333 0.00 0.00 34.05 4.00
2223 2292 8.813282 CAATTTTAAACTAACACCACCAGAAAC 58.187 33.333 0.00 0.00 0.00 2.78
2232 2301 8.141268 ACTAACACCACCAGAAACAAATATTTG 58.859 33.333 23.60 23.60 43.62 2.32
2233 2302 6.723298 ACACCACCAGAAACAAATATTTGA 57.277 33.333 30.18 0.00 40.55 2.69
2241 2310 8.869109 ACCAGAAACAAATATTTGAAATGGAGA 58.131 29.630 30.47 0.00 40.55 3.71
2386 2457 5.658468 TGCTGAAAATGTGATGTTGAAACA 58.342 33.333 0.00 0.00 44.06 2.83
2461 2532 5.734720 TGAGAAGGACACCATAATGAGAAC 58.265 41.667 0.00 0.00 0.00 3.01
2509 2580 2.134789 ATGGGAAGGACTGCATGTTC 57.865 50.000 0.00 0.00 0.00 3.18
2525 2596 7.824289 ACTGCATGTTCAGAAATAGCTAAACTA 59.176 33.333 0.00 0.00 37.51 2.24
2586 2674 3.873952 GGCTATGCATTTCGTTTCTCTCT 59.126 43.478 3.54 0.00 0.00 3.10
2594 2682 5.864474 GCATTTCGTTTCTCTCTTGTCTAGA 59.136 40.000 0.00 0.00 0.00 2.43
2595 2683 6.183360 GCATTTCGTTTCTCTCTTGTCTAGAC 60.183 42.308 16.32 16.32 0.00 2.59
2596 2684 6.636562 TTTCGTTTCTCTCTTGTCTAGACT 57.363 37.500 23.01 0.00 0.00 3.24
2598 2686 4.456222 TCGTTTCTCTCTTGTCTAGACTGG 59.544 45.833 23.01 15.07 0.00 4.00
2728 2817 1.696063 ACATGCTGTGAGGCAAAACT 58.304 45.000 0.00 0.00 45.68 2.66
2736 2825 1.032014 TGAGGCAAAACTGAGCAACC 58.968 50.000 0.00 0.00 0.00 3.77
2741 2830 1.202359 GCAAAACTGAGCAACCGGAAA 60.202 47.619 9.46 0.00 0.00 3.13
2795 2885 7.565680 TCCATATTCACCCTCTTCTCTTTTAC 58.434 38.462 0.00 0.00 0.00 2.01
2796 2886 7.403231 TCCATATTCACCCTCTTCTCTTTTACT 59.597 37.037 0.00 0.00 0.00 2.24
2797 2887 7.713073 CCATATTCACCCTCTTCTCTTTTACTC 59.287 40.741 0.00 0.00 0.00 2.59
2798 2888 5.485209 TTCACCCTCTTCTCTTTTACTCC 57.515 43.478 0.00 0.00 0.00 3.85
2799 2889 3.838903 TCACCCTCTTCTCTTTTACTCCC 59.161 47.826 0.00 0.00 0.00 4.30
2800 2890 3.841255 CACCCTCTTCTCTTTTACTCCCT 59.159 47.826 0.00 0.00 0.00 4.20
2801 2891 4.081365 CACCCTCTTCTCTTTTACTCCCTC 60.081 50.000 0.00 0.00 0.00 4.30
2802 2892 3.452990 CCCTCTTCTCTTTTACTCCCTCC 59.547 52.174 0.00 0.00 0.00 4.30
2803 2893 4.097418 CCTCTTCTCTTTTACTCCCTCCA 58.903 47.826 0.00 0.00 0.00 3.86
2804 2894 4.719273 CCTCTTCTCTTTTACTCCCTCCAT 59.281 45.833 0.00 0.00 0.00 3.41
2805 2895 5.190726 CCTCTTCTCTTTTACTCCCTCCATT 59.809 44.000 0.00 0.00 0.00 3.16
2806 2896 6.301169 TCTTCTCTTTTACTCCCTCCATTC 57.699 41.667 0.00 0.00 0.00 2.67
2807 2897 5.189934 TCTTCTCTTTTACTCCCTCCATTCC 59.810 44.000 0.00 0.00 0.00 3.01
2808 2898 4.435137 TCTCTTTTACTCCCTCCATTCCA 58.565 43.478 0.00 0.00 0.00 3.53
2809 2899 4.849810 TCTCTTTTACTCCCTCCATTCCAA 59.150 41.667 0.00 0.00 0.00 3.53
2810 2900 5.312178 TCTCTTTTACTCCCTCCATTCCAAA 59.688 40.000 0.00 0.00 0.00 3.28
2811 2901 6.011628 TCTCTTTTACTCCCTCCATTCCAAAT 60.012 38.462 0.00 0.00 0.00 2.32
2812 2902 6.561294 TCTTTTACTCCCTCCATTCCAAATT 58.439 36.000 0.00 0.00 0.00 1.82
2813 2903 7.704727 TCTTTTACTCCCTCCATTCCAAATTA 58.295 34.615 0.00 0.00 0.00 1.40
2814 2904 7.614192 TCTTTTACTCCCTCCATTCCAAATTAC 59.386 37.037 0.00 0.00 0.00 1.89
2815 2905 6.652205 TTACTCCCTCCATTCCAAATTACT 57.348 37.500 0.00 0.00 0.00 2.24
2816 2906 5.117406 ACTCCCTCCATTCCAAATTACTC 57.883 43.478 0.00 0.00 0.00 2.59
2817 2907 4.130118 CTCCCTCCATTCCAAATTACTCG 58.870 47.826 0.00 0.00 0.00 4.18
2818 2908 3.521937 TCCCTCCATTCCAAATTACTCGT 59.478 43.478 0.00 0.00 0.00 4.18
2819 2909 3.877508 CCCTCCATTCCAAATTACTCGTC 59.122 47.826 0.00 0.00 0.00 4.20
2820 2910 3.555956 CCTCCATTCCAAATTACTCGTCG 59.444 47.826 0.00 0.00 0.00 5.12
2821 2911 4.181578 CTCCATTCCAAATTACTCGTCGT 58.818 43.478 0.00 0.00 0.00 4.34
2822 2912 3.930229 TCCATTCCAAATTACTCGTCGTG 59.070 43.478 0.00 0.00 0.00 4.35
2823 2913 3.063452 CCATTCCAAATTACTCGTCGTGG 59.937 47.826 0.00 0.00 0.00 4.94
2824 2914 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
2825 2915 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2826 2916 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2827 2917 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2828 2918 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2829 2919 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2830 2920 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2831 2921 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2832 2922 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2833 2923 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2834 2924 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2835 2925 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2836 2926 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2837 2927 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2838 2928 6.479660 ACTCGTCGTGGTTTTAGTTCAAATTA 59.520 34.615 0.00 0.00 0.00 1.40
2839 2929 6.879962 TCGTCGTGGTTTTAGTTCAAATTAG 58.120 36.000 0.00 0.00 0.00 1.73
2840 2930 6.073657 TCGTCGTGGTTTTAGTTCAAATTAGG 60.074 38.462 0.00 0.00 0.00 2.69
2841 2931 6.376177 GTCGTGGTTTTAGTTCAAATTAGGG 58.624 40.000 0.00 0.00 0.00 3.53
2842 2932 6.205270 GTCGTGGTTTTAGTTCAAATTAGGGA 59.795 38.462 0.00 0.00 0.00 4.20
2843 2933 6.428771 TCGTGGTTTTAGTTCAAATTAGGGAG 59.571 38.462 0.00 0.00 0.00 4.30
2844 2934 6.206048 CGTGGTTTTAGTTCAAATTAGGGAGT 59.794 38.462 0.00 0.00 0.00 3.85
2845 2935 7.388500 CGTGGTTTTAGTTCAAATTAGGGAGTA 59.612 37.037 0.00 0.00 0.00 2.59
2846 2936 8.509690 GTGGTTTTAGTTCAAATTAGGGAGTAC 58.490 37.037 0.00 0.00 0.00 2.73
2954 3044 5.331532 GCACATGCAAAAACTCGTAGAAAAC 60.332 40.000 0.00 0.00 41.59 2.43
3021 3142 5.806502 TCATTGCATGCTATTTAACTTGCAC 59.193 36.000 20.33 0.00 43.86 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.326297 CACCCCCAATCCTCTTCTCTATC 59.674 52.174 0.00 0.00 0.00 2.08
1 2 3.321950 CACCCCCAATCCTCTTCTCTAT 58.678 50.000 0.00 0.00 0.00 1.98
2 3 2.629639 CCACCCCCAATCCTCTTCTCTA 60.630 54.545 0.00 0.00 0.00 2.43
4 5 0.548510 CCACCCCCAATCCTCTTCTC 59.451 60.000 0.00 0.00 0.00 2.87
6 7 1.490910 CTACCACCCCCAATCCTCTTC 59.509 57.143 0.00 0.00 0.00 2.87
7 8 1.596496 CTACCACCCCCAATCCTCTT 58.404 55.000 0.00 0.00 0.00 2.85
8 9 0.988678 GCTACCACCCCCAATCCTCT 60.989 60.000 0.00 0.00 0.00 3.69
9 10 1.279025 TGCTACCACCCCCAATCCTC 61.279 60.000 0.00 0.00 0.00 3.71
10 11 1.230149 TGCTACCACCCCCAATCCT 60.230 57.895 0.00 0.00 0.00 3.24
11 12 1.227383 CTGCTACCACCCCCAATCC 59.773 63.158 0.00 0.00 0.00 3.01
12 13 1.227383 CCTGCTACCACCCCCAATC 59.773 63.158 0.00 0.00 0.00 2.67
13 14 2.316586 CCCTGCTACCACCCCCAAT 61.317 63.158 0.00 0.00 0.00 3.16
14 15 2.938798 CCCTGCTACCACCCCCAA 60.939 66.667 0.00 0.00 0.00 4.12
17 18 3.339093 AAGCCCTGCTACCACCCC 61.339 66.667 0.00 0.00 38.25 4.95
18 19 1.853250 AAGAAGCCCTGCTACCACCC 61.853 60.000 0.00 0.00 38.25 4.61
19 20 0.038310 AAAGAAGCCCTGCTACCACC 59.962 55.000 0.00 0.00 38.25 4.61
20 21 1.911057 AAAAGAAGCCCTGCTACCAC 58.089 50.000 0.00 0.00 38.25 4.16
21 22 2.290705 GGTAAAAGAAGCCCTGCTACCA 60.291 50.000 0.00 0.00 38.25 3.25
22 23 2.366533 GGTAAAAGAAGCCCTGCTACC 58.633 52.381 0.00 0.00 38.25 3.18
23 24 2.007608 CGGTAAAAGAAGCCCTGCTAC 58.992 52.381 0.00 0.00 38.25 3.58
24 25 1.065709 CCGGTAAAAGAAGCCCTGCTA 60.066 52.381 0.00 0.00 38.25 3.49
25 26 0.322546 CCGGTAAAAGAAGCCCTGCT 60.323 55.000 0.00 0.00 42.56 4.24
26 27 1.313091 CCCGGTAAAAGAAGCCCTGC 61.313 60.000 0.00 0.00 0.00 4.85
27 28 0.037734 ACCCGGTAAAAGAAGCCCTG 59.962 55.000 0.00 0.00 0.00 4.45
28 29 0.037734 CACCCGGTAAAAGAAGCCCT 59.962 55.000 0.00 0.00 0.00 5.19
29 30 0.963856 CCACCCGGTAAAAGAAGCCC 60.964 60.000 0.00 0.00 0.00 5.19
30 31 0.037160 TCCACCCGGTAAAAGAAGCC 59.963 55.000 0.00 0.00 0.00 4.35
31 32 1.900245 TTCCACCCGGTAAAAGAAGC 58.100 50.000 0.00 0.00 0.00 3.86
32 33 5.462530 AATTTTCCACCCGGTAAAAGAAG 57.537 39.130 0.00 0.00 35.46 2.85
33 34 4.023021 CGAATTTTCCACCCGGTAAAAGAA 60.023 41.667 0.00 0.00 35.46 2.52
34 35 3.502979 CGAATTTTCCACCCGGTAAAAGA 59.497 43.478 0.00 0.00 35.46 2.52
35 36 3.366577 CCGAATTTTCCACCCGGTAAAAG 60.367 47.826 0.00 0.00 35.46 2.27
36 37 2.557490 CCGAATTTTCCACCCGGTAAAA 59.443 45.455 0.00 2.21 35.46 1.52
37 38 2.161030 CCGAATTTTCCACCCGGTAAA 58.839 47.619 0.00 0.00 36.17 2.01
38 39 1.823797 CCGAATTTTCCACCCGGTAA 58.176 50.000 0.00 0.00 35.83 2.85
39 40 3.554962 CCGAATTTTCCACCCGGTA 57.445 52.632 0.00 0.00 35.83 4.02
40 41 4.408378 CCGAATTTTCCACCCGGT 57.592 55.556 0.00 0.00 35.83 5.28
41 42 1.469703 GTAACCGAATTTTCCACCCGG 59.530 52.381 0.00 0.00 45.09 5.73
42 43 1.469703 GGTAACCGAATTTTCCACCCG 59.530 52.381 0.00 0.00 0.00 5.28
43 44 2.229543 GTGGTAACCGAATTTTCCACCC 59.770 50.000 0.00 0.00 37.75 4.61
44 45 2.229543 GGTGGTAACCGAATTTTCCACC 59.770 50.000 17.33 17.33 46.86 4.61
45 46 3.564235 GGTGGTAACCGAATTTTCCAC 57.436 47.619 9.98 9.98 40.43 4.02
61 62 1.399089 CTAAACGCAATTACCGGGTGG 59.601 52.381 10.66 0.00 42.84 4.61
62 63 1.202098 GCTAAACGCAATTACCGGGTG 60.202 52.381 10.66 0.00 38.92 4.61
63 64 1.089112 GCTAAACGCAATTACCGGGT 58.911 50.000 6.32 4.46 38.92 5.28
64 65 1.375551 AGCTAAACGCAATTACCGGG 58.624 50.000 6.32 0.00 42.61 5.73
65 66 2.931325 TGTAGCTAAACGCAATTACCGG 59.069 45.455 0.00 0.00 42.61 5.28
66 67 4.587211 TTGTAGCTAAACGCAATTACCG 57.413 40.909 0.00 0.00 42.61 4.02
67 68 6.471198 GGAAATTGTAGCTAAACGCAATTACC 59.529 38.462 16.19 12.30 39.65 2.85
68 69 7.248437 AGGAAATTGTAGCTAAACGCAATTAC 58.752 34.615 16.19 13.19 39.65 1.89
69 70 7.385778 AGGAAATTGTAGCTAAACGCAATTA 57.614 32.000 16.19 0.00 39.65 1.40
70 71 6.267496 AGGAAATTGTAGCTAAACGCAATT 57.733 33.333 12.07 12.07 41.52 2.32
71 72 5.897377 AGGAAATTGTAGCTAAACGCAAT 57.103 34.783 0.00 0.00 42.61 3.56
72 73 5.699097 AAGGAAATTGTAGCTAAACGCAA 57.301 34.783 0.00 0.00 42.61 4.85
73 74 5.457140 CAAAGGAAATTGTAGCTAAACGCA 58.543 37.500 0.00 0.00 42.61 5.24
74 75 4.323602 GCAAAGGAAATTGTAGCTAAACGC 59.676 41.667 0.00 0.00 34.04 4.84
75 76 5.457140 TGCAAAGGAAATTGTAGCTAAACG 58.543 37.500 0.00 0.00 32.80 3.60
76 77 6.934561 CTGCAAAGGAAATTGTAGCTAAAC 57.065 37.500 0.00 0.00 36.47 2.01
82 83 4.874970 ACTTGCTGCAAAGGAAATTGTAG 58.125 39.130 16.74 2.36 43.35 2.74
83 84 4.935352 ACTTGCTGCAAAGGAAATTGTA 57.065 36.364 16.74 0.00 32.80 2.41
84 85 3.825143 ACTTGCTGCAAAGGAAATTGT 57.175 38.095 16.74 5.23 32.80 2.71
85 86 4.121317 TCAACTTGCTGCAAAGGAAATTG 58.879 39.130 16.74 12.76 0.00 2.32
86 87 4.374399 CTCAACTTGCTGCAAAGGAAATT 58.626 39.130 16.74 1.83 0.00 1.82
87 88 3.243975 CCTCAACTTGCTGCAAAGGAAAT 60.244 43.478 20.91 1.30 0.00 2.17
88 89 2.101249 CCTCAACTTGCTGCAAAGGAAA 59.899 45.455 20.91 4.90 0.00 3.13
89 90 1.682854 CCTCAACTTGCTGCAAAGGAA 59.317 47.619 20.91 6.12 0.00 3.36
90 91 1.321474 CCTCAACTTGCTGCAAAGGA 58.679 50.000 20.91 14.76 0.00 3.36
91 92 0.316204 CCCTCAACTTGCTGCAAAGG 59.684 55.000 19.30 19.30 0.00 3.11
92 93 1.268899 CTCCCTCAACTTGCTGCAAAG 59.731 52.381 16.74 10.37 0.00 2.77
93 94 1.321474 CTCCCTCAACTTGCTGCAAA 58.679 50.000 16.74 0.18 0.00 3.68
94 95 0.538057 CCTCCCTCAACTTGCTGCAA 60.538 55.000 15.16 15.16 0.00 4.08
95 96 1.073722 CCTCCCTCAACTTGCTGCA 59.926 57.895 0.00 0.00 0.00 4.41
96 97 0.034670 ATCCTCCCTCAACTTGCTGC 60.035 55.000 0.00 0.00 0.00 5.25
97 98 1.747709 CATCCTCCCTCAACTTGCTG 58.252 55.000 0.00 0.00 0.00 4.41
98 99 0.034670 GCATCCTCCCTCAACTTGCT 60.035 55.000 0.00 0.00 0.00 3.91
99 100 0.322816 TGCATCCTCCCTCAACTTGC 60.323 55.000 0.00 0.00 0.00 4.01
100 101 2.205022 TTGCATCCTCCCTCAACTTG 57.795 50.000 0.00 0.00 0.00 3.16
101 102 2.978156 TTTGCATCCTCCCTCAACTT 57.022 45.000 0.00 0.00 0.00 2.66
102 103 2.108952 ACTTTTGCATCCTCCCTCAACT 59.891 45.455 0.00 0.00 0.00 3.16
103 104 2.519013 ACTTTTGCATCCTCCCTCAAC 58.481 47.619 0.00 0.00 0.00 3.18
104 105 2.978156 ACTTTTGCATCCTCCCTCAA 57.022 45.000 0.00 0.00 0.00 3.02
105 106 2.978156 AACTTTTGCATCCTCCCTCA 57.022 45.000 0.00 0.00 0.00 3.86
106 107 5.722021 TTTAAACTTTTGCATCCTCCCTC 57.278 39.130 0.00 0.00 0.00 4.30
107 108 5.365314 TGTTTTAAACTTTTGCATCCTCCCT 59.635 36.000 9.33 0.00 0.00 4.20
108 109 5.465390 GTGTTTTAAACTTTTGCATCCTCCC 59.535 40.000 9.33 0.00 0.00 4.30
109 110 6.280643 AGTGTTTTAAACTTTTGCATCCTCC 58.719 36.000 9.33 0.00 0.00 4.30
110 111 7.203218 AGAGTGTTTTAAACTTTTGCATCCTC 58.797 34.615 9.33 1.79 0.00 3.71
111 112 7.112452 AGAGTGTTTTAAACTTTTGCATCCT 57.888 32.000 9.33 0.00 0.00 3.24
112 113 8.865590 TTAGAGTGTTTTAAACTTTTGCATCC 57.134 30.769 9.33 0.00 0.00 3.51
115 116 9.477484 TGTTTTAGAGTGTTTTAAACTTTTGCA 57.523 25.926 9.33 0.00 31.71 4.08
123 124 9.372369 CCCACATTTGTTTTAGAGTGTTTTAAA 57.628 29.630 0.00 0.00 0.00 1.52
124 125 8.750298 TCCCACATTTGTTTTAGAGTGTTTTAA 58.250 29.630 0.00 0.00 0.00 1.52
125 126 8.294954 TCCCACATTTGTTTTAGAGTGTTTTA 57.705 30.769 0.00 0.00 0.00 1.52
126 127 7.176589 TCCCACATTTGTTTTAGAGTGTTTT 57.823 32.000 0.00 0.00 0.00 2.43
127 128 6.682861 GCTCCCACATTTGTTTTAGAGTGTTT 60.683 38.462 0.00 0.00 0.00 2.83
128 129 5.221244 GCTCCCACATTTGTTTTAGAGTGTT 60.221 40.000 0.00 0.00 0.00 3.32
129 130 4.278419 GCTCCCACATTTGTTTTAGAGTGT 59.722 41.667 0.00 0.00 0.00 3.55
130 131 4.278170 TGCTCCCACATTTGTTTTAGAGTG 59.722 41.667 0.00 0.00 0.00 3.51
131 132 4.469657 TGCTCCCACATTTGTTTTAGAGT 58.530 39.130 0.00 0.00 0.00 3.24
132 133 5.222631 GTTGCTCCCACATTTGTTTTAGAG 58.777 41.667 0.00 0.00 0.00 2.43
133 134 4.038642 GGTTGCTCCCACATTTGTTTTAGA 59.961 41.667 0.00 0.00 0.00 2.10
134 135 4.202202 TGGTTGCTCCCACATTTGTTTTAG 60.202 41.667 0.00 0.00 34.77 1.85
135 136 3.706594 TGGTTGCTCCCACATTTGTTTTA 59.293 39.130 0.00 0.00 34.77 1.52
136 137 2.503356 TGGTTGCTCCCACATTTGTTTT 59.497 40.909 0.00 0.00 34.77 2.43
137 138 2.102925 CTGGTTGCTCCCACATTTGTTT 59.897 45.455 0.00 0.00 34.77 2.83
138 139 1.688197 CTGGTTGCTCCCACATTTGTT 59.312 47.619 0.00 0.00 34.77 2.83
139 140 1.331214 CTGGTTGCTCCCACATTTGT 58.669 50.000 0.00 0.00 34.77 2.83
140 141 1.331214 ACTGGTTGCTCCCACATTTG 58.669 50.000 0.00 0.00 34.77 2.32
141 142 2.108250 ACTACTGGTTGCTCCCACATTT 59.892 45.455 0.00 0.00 34.77 2.32
142 143 1.705186 ACTACTGGTTGCTCCCACATT 59.295 47.619 0.00 0.00 34.77 2.71
143 144 1.279271 GACTACTGGTTGCTCCCACAT 59.721 52.381 0.00 0.00 34.77 3.21
144 145 0.685097 GACTACTGGTTGCTCCCACA 59.315 55.000 0.00 0.00 34.77 4.17
145 146 0.389948 CGACTACTGGTTGCTCCCAC 60.390 60.000 0.00 0.00 34.77 4.61
146 147 0.541063 TCGACTACTGGTTGCTCCCA 60.541 55.000 0.00 0.00 34.77 4.37
147 148 0.606604 TTCGACTACTGGTTGCTCCC 59.393 55.000 0.00 0.00 34.77 4.30
148 149 1.672145 GGTTCGACTACTGGTTGCTCC 60.672 57.143 0.00 0.00 0.00 4.70
149 150 1.711206 GGTTCGACTACTGGTTGCTC 58.289 55.000 0.00 0.00 0.00 4.26
150 151 0.038526 CGGTTCGACTACTGGTTGCT 60.039 55.000 0.00 0.00 0.00 3.91
151 152 1.623973 GCGGTTCGACTACTGGTTGC 61.624 60.000 0.00 0.00 0.00 4.17
152 153 1.012486 GGCGGTTCGACTACTGGTTG 61.012 60.000 0.00 0.00 0.00 3.77
153 154 1.291272 GGCGGTTCGACTACTGGTT 59.709 57.895 0.00 0.00 0.00 3.67
154 155 2.968206 GGCGGTTCGACTACTGGT 59.032 61.111 0.00 0.00 0.00 4.00
155 156 2.202570 CGGCGGTTCGACTACTGG 60.203 66.667 0.00 0.00 29.68 4.00
156 157 2.872557 TCGGCGGTTCGACTACTG 59.127 61.111 7.21 0.00 33.92 2.74
162 163 0.523968 CTATTTCGTCGGCGGTTCGA 60.524 55.000 10.62 12.58 38.89 3.71
163 164 1.915093 CTATTTCGTCGGCGGTTCG 59.085 57.895 10.62 10.29 38.89 3.95
164 165 1.079875 TGCTATTTCGTCGGCGGTTC 61.080 55.000 10.62 0.00 38.89 3.62
165 166 1.079681 TGCTATTTCGTCGGCGGTT 60.080 52.632 10.62 0.00 38.89 4.44
166 167 1.518572 CTGCTATTTCGTCGGCGGT 60.519 57.895 10.62 0.00 38.89 5.68
167 168 2.237751 CCTGCTATTTCGTCGGCGG 61.238 63.158 10.62 0.00 38.89 6.13
168 169 2.871427 GCCTGCTATTTCGTCGGCG 61.871 63.158 1.15 1.15 39.92 6.46
169 170 1.766143 CTGCCTGCTATTTCGTCGGC 61.766 60.000 0.00 0.00 38.01 5.54
170 171 1.766143 GCTGCCTGCTATTTCGTCGG 61.766 60.000 0.00 0.00 38.95 4.79
171 172 1.083806 TGCTGCCTGCTATTTCGTCG 61.084 55.000 0.00 0.00 43.37 5.12
172 173 1.086696 TTGCTGCCTGCTATTTCGTC 58.913 50.000 0.00 0.00 43.37 4.20
173 174 0.804989 GTTGCTGCCTGCTATTTCGT 59.195 50.000 0.00 0.00 43.37 3.85
174 175 1.089920 AGTTGCTGCCTGCTATTTCG 58.910 50.000 0.00 0.00 43.37 3.46
175 176 3.582714 AAAGTTGCTGCCTGCTATTTC 57.417 42.857 0.00 0.00 43.37 2.17
176 177 3.656559 CAAAAGTTGCTGCCTGCTATTT 58.343 40.909 0.00 0.00 43.37 1.40
177 178 3.308438 CAAAAGTTGCTGCCTGCTATT 57.692 42.857 0.00 0.00 43.37 1.73
189 190 2.195922 GTGGCTGTTCAGCAAAAGTTG 58.804 47.619 23.23 0.00 36.33 3.16
190 191 1.136891 GGTGGCTGTTCAGCAAAAGTT 59.863 47.619 23.23 0.00 35.45 2.66
191 192 0.746659 GGTGGCTGTTCAGCAAAAGT 59.253 50.000 23.23 0.00 35.45 2.66
192 193 0.746063 TGGTGGCTGTTCAGCAAAAG 59.254 50.000 23.23 0.00 41.42 2.27
193 194 0.459489 GTGGTGGCTGTTCAGCAAAA 59.541 50.000 23.23 8.21 45.07 2.44
194 195 0.682532 TGTGGTGGCTGTTCAGCAAA 60.683 50.000 23.23 10.44 45.07 3.68
195 196 0.467844 ATGTGGTGGCTGTTCAGCAA 60.468 50.000 23.23 12.07 45.07 3.91
196 197 0.467844 AATGTGGTGGCTGTTCAGCA 60.468 50.000 23.23 9.32 42.01 4.41
197 198 1.470098 CTAATGTGGTGGCTGTTCAGC 59.530 52.381 15.41 15.41 35.87 4.26
198 199 2.086869 CCTAATGTGGTGGCTGTTCAG 58.913 52.381 0.00 0.00 0.00 3.02
199 200 1.702401 TCCTAATGTGGTGGCTGTTCA 59.298 47.619 0.00 0.00 0.00 3.18
200 201 2.027192 TCTCCTAATGTGGTGGCTGTTC 60.027 50.000 0.00 0.00 0.00 3.18
201 202 1.985159 TCTCCTAATGTGGTGGCTGTT 59.015 47.619 0.00 0.00 0.00 3.16
202 203 1.656587 TCTCCTAATGTGGTGGCTGT 58.343 50.000 0.00 0.00 0.00 4.40
203 204 2.569059 CATCTCCTAATGTGGTGGCTG 58.431 52.381 0.00 0.00 0.00 4.85
204 205 1.492176 CCATCTCCTAATGTGGTGGCT 59.508 52.381 0.00 0.00 32.30 4.75
205 206 1.212935 ACCATCTCCTAATGTGGTGGC 59.787 52.381 0.00 0.00 41.56 5.01
206 207 3.282021 CAACCATCTCCTAATGTGGTGG 58.718 50.000 0.00 0.00 43.82 4.61
207 208 3.282021 CCAACCATCTCCTAATGTGGTG 58.718 50.000 0.00 0.00 43.82 4.17
208 209 2.242196 CCCAACCATCTCCTAATGTGGT 59.758 50.000 0.00 0.00 46.41 4.16
209 210 2.509548 TCCCAACCATCTCCTAATGTGG 59.490 50.000 0.00 0.00 37.74 4.17
210 211 3.931907 TCCCAACCATCTCCTAATGTG 57.068 47.619 0.00 0.00 0.00 3.21
211 212 3.788142 ACATCCCAACCATCTCCTAATGT 59.212 43.478 0.00 0.00 0.00 2.71
212 213 4.443978 ACATCCCAACCATCTCCTAATG 57.556 45.455 0.00 0.00 0.00 1.90
213 214 7.888514 TTATACATCCCAACCATCTCCTAAT 57.111 36.000 0.00 0.00 0.00 1.73
214 215 7.202186 CCTTTATACATCCCAACCATCTCCTAA 60.202 40.741 0.00 0.00 0.00 2.69
215 216 6.272324 CCTTTATACATCCCAACCATCTCCTA 59.728 42.308 0.00 0.00 0.00 2.94
216 217 5.073691 CCTTTATACATCCCAACCATCTCCT 59.926 44.000 0.00 0.00 0.00 3.69
217 218 5.163088 ACCTTTATACATCCCAACCATCTCC 60.163 44.000 0.00 0.00 0.00 3.71
218 219 5.941788 ACCTTTATACATCCCAACCATCTC 58.058 41.667 0.00 0.00 0.00 2.75
219 220 5.994416 ACCTTTATACATCCCAACCATCT 57.006 39.130 0.00 0.00 0.00 2.90
220 221 8.528044 TTTAACCTTTATACATCCCAACCATC 57.472 34.615 0.00 0.00 0.00 3.51
222 223 9.411189 GTATTTAACCTTTATACATCCCAACCA 57.589 33.333 0.00 0.00 0.00 3.67
223 224 9.636789 AGTATTTAACCTTTATACATCCCAACC 57.363 33.333 0.00 0.00 0.00 3.77
279 280 9.712410 CGTTCGAAATATTTCAAACAGATTTTG 57.288 29.630 24.52 8.76 34.59 2.44
280 281 8.911662 CCGTTCGAAATATTTCAAACAGATTTT 58.088 29.630 24.52 0.00 34.59 1.82
281 282 8.079809 ACCGTTCGAAATATTTCAAACAGATTT 58.920 29.630 24.52 7.17 34.59 2.17
282 283 7.590279 ACCGTTCGAAATATTTCAAACAGATT 58.410 30.769 24.52 8.53 34.59 2.40
283 284 7.141100 ACCGTTCGAAATATTTCAAACAGAT 57.859 32.000 24.52 11.35 34.59 2.90
284 285 6.548441 ACCGTTCGAAATATTTCAAACAGA 57.452 33.333 24.52 13.30 34.59 3.41
285 286 8.889849 AATACCGTTCGAAATATTTCAAACAG 57.110 30.769 24.52 18.46 34.59 3.16
286 287 9.119329 CAAATACCGTTCGAAATATTTCAAACA 57.881 29.630 24.52 11.23 34.59 2.83
287 288 9.120422 ACAAATACCGTTCGAAATATTTCAAAC 57.880 29.630 24.23 21.15 37.01 2.93
288 289 9.332301 GACAAATACCGTTCGAAATATTTCAAA 57.668 29.630 24.23 12.53 37.01 2.69
289 290 7.964011 GGACAAATACCGTTCGAAATATTTCAA 59.036 33.333 24.23 15.63 37.01 2.69
290 291 7.119407 TGGACAAATACCGTTCGAAATATTTCA 59.881 33.333 24.23 11.32 37.01 2.69
291 292 7.465989 TGGACAAATACCGTTCGAAATATTTC 58.534 34.615 16.79 16.79 0.00 2.17
292 293 7.380431 TGGACAAATACCGTTCGAAATATTT 57.620 32.000 0.00 8.27 0.00 1.40
293 294 6.988622 TGGACAAATACCGTTCGAAATATT 57.011 33.333 0.00 2.17 0.00 1.28
294 295 6.988622 TTGGACAAATACCGTTCGAAATAT 57.011 33.333 0.00 0.00 0.00 1.28
295 296 6.798315 TTTGGACAAATACCGTTCGAAATA 57.202 33.333 0.00 0.00 0.00 1.40
296 297 5.692613 TTTGGACAAATACCGTTCGAAAT 57.307 34.783 0.00 0.00 0.00 2.17
297 298 5.496133 TTTTGGACAAATACCGTTCGAAA 57.504 34.783 0.00 0.00 0.00 3.46
298 299 5.453648 CATTTTGGACAAATACCGTTCGAA 58.546 37.500 0.00 0.00 0.00 3.71
299 300 4.083217 CCATTTTGGACAAATACCGTTCGA 60.083 41.667 0.00 0.00 40.96 3.71
300 301 4.162812 CCATTTTGGACAAATACCGTTCG 58.837 43.478 0.00 0.00 40.96 3.95
301 302 5.128992 ACCATTTTGGACAAATACCGTTC 57.871 39.130 0.00 0.00 40.96 3.95
302 303 5.293560 CAACCATTTTGGACAAATACCGTT 58.706 37.500 0.00 0.00 40.96 4.44
303 304 4.262249 CCAACCATTTTGGACAAATACCGT 60.262 41.667 0.00 0.00 40.96 4.83
304 305 4.021894 TCCAACCATTTTGGACAAATACCG 60.022 41.667 1.45 0.00 43.17 4.02
305 306 5.245075 TCTCCAACCATTTTGGACAAATACC 59.755 40.000 1.45 0.00 43.17 2.73
306 307 6.339587 TCTCCAACCATTTTGGACAAATAC 57.660 37.500 1.45 0.00 43.17 1.89
307 308 6.496565 ACATCTCCAACCATTTTGGACAAATA 59.503 34.615 1.45 0.00 43.17 1.40
308 309 5.307716 ACATCTCCAACCATTTTGGACAAAT 59.692 36.000 1.45 0.00 43.17 2.32
309 310 4.653341 ACATCTCCAACCATTTTGGACAAA 59.347 37.500 1.45 0.00 43.17 2.83
310 311 4.222336 ACATCTCCAACCATTTTGGACAA 58.778 39.130 1.45 0.00 43.17 3.18
311 312 3.843422 ACATCTCCAACCATTTTGGACA 58.157 40.909 1.45 0.00 43.17 4.02
312 313 5.975693 TTACATCTCCAACCATTTTGGAC 57.024 39.130 1.45 0.00 43.17 4.02
313 314 6.985653 TTTTACATCTCCAACCATTTTGGA 57.014 33.333 5.63 5.63 45.61 3.53
314 315 6.145371 CGTTTTTACATCTCCAACCATTTTGG 59.855 38.462 0.00 0.00 45.02 3.28
315 316 6.920758 TCGTTTTTACATCTCCAACCATTTTG 59.079 34.615 0.00 0.00 0.00 2.44
316 317 7.045126 TCGTTTTTACATCTCCAACCATTTT 57.955 32.000 0.00 0.00 0.00 1.82
317 318 6.642707 TCGTTTTTACATCTCCAACCATTT 57.357 33.333 0.00 0.00 0.00 2.32
318 319 5.335661 GCTCGTTTTTACATCTCCAACCATT 60.336 40.000 0.00 0.00 0.00 3.16
319 320 4.156008 GCTCGTTTTTACATCTCCAACCAT 59.844 41.667 0.00 0.00 0.00 3.55
320 321 3.500680 GCTCGTTTTTACATCTCCAACCA 59.499 43.478 0.00 0.00 0.00 3.67
321 322 3.751698 AGCTCGTTTTTACATCTCCAACC 59.248 43.478 0.00 0.00 0.00 3.77
322 323 5.049680 TGAAGCTCGTTTTTACATCTCCAAC 60.050 40.000 0.00 0.00 0.00 3.77
323 324 5.049680 GTGAAGCTCGTTTTTACATCTCCAA 60.050 40.000 0.00 0.00 0.00 3.53
324 325 4.451096 GTGAAGCTCGTTTTTACATCTCCA 59.549 41.667 0.00 0.00 0.00 3.86
325 326 4.142881 GGTGAAGCTCGTTTTTACATCTCC 60.143 45.833 0.00 0.00 0.00 3.71
326 327 4.691216 AGGTGAAGCTCGTTTTTACATCTC 59.309 41.667 0.00 0.00 0.00 2.75
327 328 4.642429 AGGTGAAGCTCGTTTTTACATCT 58.358 39.130 0.00 0.00 0.00 2.90
328 329 4.451096 TGAGGTGAAGCTCGTTTTTACATC 59.549 41.667 5.15 0.00 0.00 3.06
329 330 4.385825 TGAGGTGAAGCTCGTTTTTACAT 58.614 39.130 5.15 0.00 0.00 2.29
330 331 3.799366 TGAGGTGAAGCTCGTTTTTACA 58.201 40.909 5.15 0.00 0.00 2.41
331 332 3.364068 GCTGAGGTGAAGCTCGTTTTTAC 60.364 47.826 5.15 0.00 37.69 2.01
332 333 2.806244 GCTGAGGTGAAGCTCGTTTTTA 59.194 45.455 5.15 0.00 37.69 1.52
333 334 1.604278 GCTGAGGTGAAGCTCGTTTTT 59.396 47.619 5.15 0.00 37.69 1.94
334 335 1.230324 GCTGAGGTGAAGCTCGTTTT 58.770 50.000 5.15 0.00 37.69 2.43
335 336 0.106708 TGCTGAGGTGAAGCTCGTTT 59.893 50.000 5.15 0.00 41.42 3.60
336 337 0.322975 ATGCTGAGGTGAAGCTCGTT 59.677 50.000 5.15 0.00 41.42 3.85
337 338 0.322975 AATGCTGAGGTGAAGCTCGT 59.677 50.000 5.15 0.00 41.42 4.18
338 339 0.725686 CAATGCTGAGGTGAAGCTCG 59.274 55.000 5.15 1.99 41.42 5.03
339 340 2.105006 TCAATGCTGAGGTGAAGCTC 57.895 50.000 2.54 2.54 41.42 4.09
340 341 2.157738 GTTCAATGCTGAGGTGAAGCT 58.842 47.619 0.00 0.00 41.42 3.74
341 342 1.135859 CGTTCAATGCTGAGGTGAAGC 60.136 52.381 0.00 0.00 41.22 3.86
342 343 1.466167 CCGTTCAATGCTGAGGTGAAG 59.534 52.381 0.00 0.00 32.15 3.02
343 344 1.071542 TCCGTTCAATGCTGAGGTGAA 59.928 47.619 0.00 0.00 31.69 3.18
344 345 0.684535 TCCGTTCAATGCTGAGGTGA 59.315 50.000 0.00 0.00 31.69 4.02
345 346 1.081892 CTCCGTTCAATGCTGAGGTG 58.918 55.000 0.00 0.00 31.69 4.00
346 347 0.036010 CCTCCGTTCAATGCTGAGGT 60.036 55.000 0.00 0.00 38.22 3.85
347 348 0.250234 TCCTCCGTTCAATGCTGAGG 59.750 55.000 0.00 0.00 43.21 3.86
348 349 1.649664 CTCCTCCGTTCAATGCTGAG 58.350 55.000 0.00 0.00 31.69 3.35
349 350 0.250234 CCTCCTCCGTTCAATGCTGA 59.750 55.000 0.00 0.00 0.00 4.26
350 351 0.250234 TCCTCCTCCGTTCAATGCTG 59.750 55.000 0.00 0.00 0.00 4.41
351 352 0.539051 CTCCTCCTCCGTTCAATGCT 59.461 55.000 0.00 0.00 0.00 3.79
352 353 1.092345 GCTCCTCCTCCGTTCAATGC 61.092 60.000 0.00 0.00 0.00 3.56
353 354 0.462759 GGCTCCTCCTCCGTTCAATG 60.463 60.000 0.00 0.00 0.00 2.82
354 355 1.908483 GGCTCCTCCTCCGTTCAAT 59.092 57.895 0.00 0.00 0.00 2.57
355 356 2.646175 CGGCTCCTCCTCCGTTCAA 61.646 63.158 0.00 0.00 40.72 2.69
356 357 3.068691 CGGCTCCTCCTCCGTTCA 61.069 66.667 0.00 0.00 40.72 3.18
357 358 2.754658 TCGGCTCCTCCTCCGTTC 60.755 66.667 0.47 0.00 45.44 3.95
358 359 2.756283 CTCGGCTCCTCCTCCGTT 60.756 66.667 0.47 0.00 45.44 4.44
359 360 4.049817 ACTCGGCTCCTCCTCCGT 62.050 66.667 0.47 0.00 45.44 4.69
360 361 3.522731 CACTCGGCTCCTCCTCCG 61.523 72.222 0.00 0.00 46.52 4.63
361 362 1.682684 TTCACTCGGCTCCTCCTCC 60.683 63.158 0.00 0.00 0.00 4.30
362 363 0.968393 AGTTCACTCGGCTCCTCCTC 60.968 60.000 0.00 0.00 0.00 3.71
363 364 1.077625 AGTTCACTCGGCTCCTCCT 59.922 57.895 0.00 0.00 0.00 3.69
364 365 1.216710 CAGTTCACTCGGCTCCTCC 59.783 63.158 0.00 0.00 0.00 4.30
365 366 1.216710 CCAGTTCACTCGGCTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
366 367 2.948720 GCCAGTTCACTCGGCTCCT 61.949 63.158 11.16 0.00 42.78 3.69
367 368 2.435059 GCCAGTTCACTCGGCTCC 60.435 66.667 11.16 0.00 42.78 4.70
370 371 3.426568 GCAGCCAGTTCACTCGGC 61.427 66.667 10.69 10.69 46.62 5.54
371 372 2.743928 GGCAGCCAGTTCACTCGG 60.744 66.667 6.55 0.00 0.00 4.63
372 373 3.114616 CGGCAGCCAGTTCACTCG 61.115 66.667 13.30 0.00 0.00 4.18
373 374 2.029844 GTCGGCAGCCAGTTCACTC 61.030 63.158 13.30 0.00 0.00 3.51
374 375 2.031163 GTCGGCAGCCAGTTCACT 59.969 61.111 13.30 0.00 0.00 3.41
375 376 3.414700 CGTCGGCAGCCAGTTCAC 61.415 66.667 13.30 0.00 0.00 3.18
382 383 2.672908 TATAACGAGCGTCGGCAGCC 62.673 60.000 0.00 0.00 45.59 4.85
383 384 1.298863 TATAACGAGCGTCGGCAGC 60.299 57.895 11.13 0.00 45.59 5.25
384 385 0.029035 AGTATAACGAGCGTCGGCAG 59.971 55.000 11.13 0.00 45.59 4.85
385 386 1.298602 TAGTATAACGAGCGTCGGCA 58.701 50.000 11.13 0.66 45.59 5.69
386 387 2.608467 ATAGTATAACGAGCGTCGGC 57.392 50.000 11.13 0.00 45.59 5.54
387 388 4.652175 TGTATAGTATAACGAGCGTCGG 57.348 45.455 11.13 0.00 45.59 4.79
388 389 6.411782 TGTTTTGTATAGTATAACGAGCGTCG 59.588 38.462 0.00 5.97 46.93 5.12
389 390 7.641411 TCTGTTTTGTATAGTATAACGAGCGTC 59.359 37.037 0.00 0.00 0.00 5.19
390 391 7.475015 TCTGTTTTGTATAGTATAACGAGCGT 58.525 34.615 0.00 0.00 0.00 5.07
391 392 7.903452 TCTGTTTTGTATAGTATAACGAGCG 57.097 36.000 0.00 0.00 0.00 5.03
392 393 9.512435 TCTTCTGTTTTGTATAGTATAACGAGC 57.488 33.333 0.00 0.00 0.00 5.03
414 415 5.343593 CGCCAGTGTCGAGAATAATATCTTC 59.656 44.000 0.00 0.00 0.00 2.87
420 421 1.806623 GCCGCCAGTGTCGAGAATAAT 60.807 52.381 0.00 0.00 0.00 1.28
421 422 0.459585 GCCGCCAGTGTCGAGAATAA 60.460 55.000 0.00 0.00 0.00 1.40
422 423 1.141019 GCCGCCAGTGTCGAGAATA 59.859 57.895 0.00 0.00 0.00 1.75
423 424 2.125512 GCCGCCAGTGTCGAGAAT 60.126 61.111 0.00 0.00 0.00 2.40
436 437 2.111756 CTTTTTATTGATGAGCGCCGC 58.888 47.619 2.29 0.00 0.00 6.53
452 453 6.403636 GCGTCTGACATGAATGTAATCCTTTT 60.404 38.462 8.73 0.00 41.95 2.27
456 457 4.025396 CAGCGTCTGACATGAATGTAATCC 60.025 45.833 8.73 0.00 41.95 3.01
460 461 2.270923 GCAGCGTCTGACATGAATGTA 58.729 47.619 8.73 0.00 41.95 2.29
461 462 1.081892 GCAGCGTCTGACATGAATGT 58.918 50.000 8.73 0.00 45.16 2.71
462 463 0.376152 GGCAGCGTCTGACATGAATG 59.624 55.000 8.73 0.18 39.71 2.67
463 464 1.086067 CGGCAGCGTCTGACATGAAT 61.086 55.000 8.73 0.00 39.98 2.57
465 466 2.125952 CGGCAGCGTCTGACATGA 60.126 61.111 8.73 0.00 39.98 3.07
466 467 3.190849 CCGGCAGCGTCTGACATG 61.191 66.667 8.73 7.09 39.98 3.21
527 531 3.696426 GAGATCGATGTGCGCGCC 61.696 66.667 30.77 20.33 40.61 6.53
532 536 0.318275 GGTCGGAGAGATCGATGTGC 60.318 60.000 0.54 0.00 36.95 4.57
554 558 9.088512 GAATTTGTACTCCTAACATAGTGAGTG 57.911 37.037 13.88 0.00 37.12 3.51
557 561 8.812972 ACTGAATTTGTACTCCTAACATAGTGA 58.187 33.333 0.00 0.00 0.00 3.41
558 562 9.088512 GACTGAATTTGTACTCCTAACATAGTG 57.911 37.037 0.00 0.00 0.00 2.74
559 563 7.974501 CGACTGAATTTGTACTCCTAACATAGT 59.025 37.037 0.00 0.00 0.00 2.12
564 568 5.169295 AGCGACTGAATTTGTACTCCTAAC 58.831 41.667 0.00 0.00 0.00 2.34
565 569 5.401531 AGCGACTGAATTTGTACTCCTAA 57.598 39.130 0.00 0.00 0.00 2.69
566 570 5.401531 AAGCGACTGAATTTGTACTCCTA 57.598 39.130 0.00 0.00 0.00 2.94
567 571 3.963428 AGCGACTGAATTTGTACTCCT 57.037 42.857 0.00 0.00 0.00 3.69
568 572 3.371285 GGAAGCGACTGAATTTGTACTCC 59.629 47.826 0.00 0.00 0.00 3.85
569 573 3.994392 TGGAAGCGACTGAATTTGTACTC 59.006 43.478 0.00 0.00 0.00 2.59
570 574 3.746492 GTGGAAGCGACTGAATTTGTACT 59.254 43.478 0.00 0.00 0.00 2.73
571 575 3.496884 TGTGGAAGCGACTGAATTTGTAC 59.503 43.478 0.00 0.00 0.00 2.90
581 585 1.617947 GGGGAGATGTGGAAGCGACT 61.618 60.000 0.00 0.00 0.00 4.18
585 589 1.700042 ATCGGGGGAGATGTGGAAGC 61.700 60.000 0.00 0.00 0.00 3.86
587 591 1.054406 GGATCGGGGGAGATGTGGAA 61.054 60.000 0.00 0.00 0.00 3.53
588 592 1.459539 GGATCGGGGGAGATGTGGA 60.460 63.158 0.00 0.00 0.00 4.02
632 637 4.115199 CCAAAGAGGGGGCTCGGG 62.115 72.222 0.00 0.00 0.00 5.14
685 698 2.811317 GAAGGTGTCGGCTGCGAG 60.811 66.667 0.00 0.00 0.00 5.03
686 699 4.717629 CGAAGGTGTCGGCTGCGA 62.718 66.667 0.00 0.00 46.45 5.10
733 746 1.361993 CGGAGCCGATGAGAAGGAG 59.638 63.158 2.00 0.00 42.83 3.69
762 776 3.610669 CCAGGAGGAGGCGATCGG 61.611 72.222 18.30 0.00 36.89 4.18
778 792 4.459089 GGACTGGACTGAGCGGCC 62.459 72.222 0.00 0.00 0.00 6.13
843 858 1.227704 TTGTGTCGCATTCCCGTGT 60.228 52.632 0.00 0.00 0.00 4.49
857 872 3.054166 TGGAGACGTCGTTAATGTTGTG 58.946 45.455 10.46 0.00 0.00 3.33
858 873 3.054878 GTGGAGACGTCGTTAATGTTGT 58.945 45.455 10.46 0.00 0.00 3.32
923 941 7.156000 TCTGTTAACCGATCTGTTTCACAATA 58.844 34.615 7.87 1.75 0.00 1.90
925 943 5.361427 TCTGTTAACCGATCTGTTTCACAA 58.639 37.500 7.87 0.00 0.00 3.33
965 983 1.444895 GGCAGCAAGATTGGCAACG 60.445 57.895 0.00 0.00 40.50 4.10
966 984 0.108945 GAGGCAGCAAGATTGGCAAC 60.109 55.000 0.00 0.00 42.98 4.17
1018 1045 1.421410 GCTACAATGGCGGACGTGAG 61.421 60.000 0.00 0.00 0.00 3.51
1038 1065 2.230266 GTGCGTCCTTCTCTCTTCTTCT 59.770 50.000 0.00 0.00 0.00 2.85
1140 1167 1.128200 CGACCCAGTTATGATCCCCA 58.872 55.000 0.00 0.00 0.00 4.96
1281 1338 1.669440 GTACGGAGGCACTGGTTCA 59.331 57.895 0.00 0.00 41.55 3.18
1296 1353 2.090524 CGGGGCGACTTTGACGTAC 61.091 63.158 0.00 0.00 0.00 3.67
1356 1416 6.348295 CCAGATCCTCATGCTTGATAAAATCG 60.348 42.308 2.33 0.00 0.00 3.34
1554 1617 1.910580 ATACCTGGCCACCAACTCGG 61.911 60.000 0.00 1.37 42.50 4.63
1630 1693 2.825836 CTCCCTCATGGCGCCAAC 60.826 66.667 36.33 3.62 0.00 3.77
1697 1760 3.010200 AGATGAAATGGAGCAAGGACC 57.990 47.619 0.00 0.00 0.00 4.46
1800 1863 0.753262 ACCTATCTGCCGCTACAAGG 59.247 55.000 0.00 0.00 0.00 3.61
1821 1884 1.664649 CTTGAGCCTCGCAACGTCA 60.665 57.895 0.00 0.00 0.00 4.35
1825 1888 1.023513 ATCAGCTTGAGCCTCGCAAC 61.024 55.000 0.00 0.00 43.38 4.17
1872 1935 0.801872 TTGCAACCATGTCGGAATCG 59.198 50.000 0.00 0.00 38.63 3.34
1875 1938 2.147958 GTAGTTGCAACCATGTCGGAA 58.852 47.619 25.62 0.00 38.63 4.30
1879 1942 2.228822 CCAAGGTAGTTGCAACCATGTC 59.771 50.000 25.62 11.21 39.64 3.06
1895 1958 1.538849 GCTGTTCAGCCAAAACCAAGG 60.539 52.381 13.11 0.00 0.00 3.61
1896 1959 1.136695 TGCTGTTCAGCCAAAACCAAG 59.863 47.619 19.91 0.00 0.00 3.61
1911 1974 5.372343 TGAGTCCATGGTAATTATGCTGT 57.628 39.130 12.58 0.00 0.00 4.40
1947 2010 0.038159 ACGGAGAAGCAAGGAACTCG 60.038 55.000 0.00 0.00 38.49 4.18
2047 2111 2.232452 GCTCAACAGGCAAGAGTCTAGA 59.768 50.000 0.00 0.00 0.00 2.43
2109 2177 6.761242 TGATCATTAGTACCACACATGTAAGC 59.239 38.462 0.00 0.00 0.00 3.09
2211 2280 8.497554 CATTTCAAATATTTGTTTCTGGTGGTG 58.502 33.333 23.95 8.93 39.18 4.17
2232 2301 7.622893 ACTAGCAAAATTCTCTCTCCATTTC 57.377 36.000 0.00 0.00 0.00 2.17
2233 2302 7.121907 GGAACTAGCAAAATTCTCTCTCCATTT 59.878 37.037 0.00 0.00 0.00 2.32
2241 2310 4.003648 CACCGGAACTAGCAAAATTCTCT 58.996 43.478 9.46 0.00 0.00 3.10
2245 2314 4.142469 GCATACACCGGAACTAGCAAAATT 60.142 41.667 9.46 0.00 0.00 1.82
2358 2429 7.789273 TCAACATCACATTTTCAGCATTTTT 57.211 28.000 0.00 0.00 0.00 1.94
2386 2457 8.608185 ATCAAAACTGGGACCATGTTTATAAT 57.392 30.769 12.49 6.19 34.09 1.28
2477 2548 4.870991 GTCCTTCCCATTTTAGAGAACTCG 59.129 45.833 0.00 0.00 34.09 4.18
2525 2596 3.440173 CGTCCATGTGCAGTAATCCTTTT 59.560 43.478 0.00 0.00 0.00 2.27
2586 2674 3.055819 GGAACATGCTCCAGTCTAGACAA 60.056 47.826 24.44 8.80 35.36 3.18
2726 2815 2.922740 TTACTTTCCGGTTGCTCAGT 57.077 45.000 0.00 0.00 0.00 3.41
2727 2816 4.003648 AGAATTACTTTCCGGTTGCTCAG 58.996 43.478 0.00 0.00 34.67 3.35
2728 2817 4.015872 AGAATTACTTTCCGGTTGCTCA 57.984 40.909 0.00 0.00 34.67 4.26
2736 2825 6.275305 GCTAGTTGCTAGAATTACTTTCCG 57.725 41.667 7.30 0.00 36.26 4.30
2795 2885 4.130118 CGAGTAATTTGGAATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
2796 2886 3.521937 ACGAGTAATTTGGAATGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
2797 2887 3.877508 GACGAGTAATTTGGAATGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2798 2888 3.555956 CGACGAGTAATTTGGAATGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
2799 2889 4.032900 CACGACGAGTAATTTGGAATGGAG 59.967 45.833 0.00 0.00 0.00 3.86
2800 2890 3.930229 CACGACGAGTAATTTGGAATGGA 59.070 43.478 0.00 0.00 0.00 3.41
2801 2891 3.063452 CCACGACGAGTAATTTGGAATGG 59.937 47.826 0.00 0.00 0.00 3.16
2802 2892 3.682858 ACCACGACGAGTAATTTGGAATG 59.317 43.478 0.00 0.00 0.00 2.67
2803 2893 3.934068 ACCACGACGAGTAATTTGGAAT 58.066 40.909 0.00 0.00 0.00 3.01
2804 2894 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2805 2895 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2806 2896 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2807 2897 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2808 2898 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2809 2899 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2810 2900 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2811 2901 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2812 2902 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2813 2903 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2814 2904 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2815 2905 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2816 2906 6.075280 CCTAATTTGAACTAAAACCACGACG 58.925 40.000 0.00 0.00 0.00 5.12
2817 2907 6.205270 TCCCTAATTTGAACTAAAACCACGAC 59.795 38.462 0.00 0.00 0.00 4.34
2818 2908 6.297582 TCCCTAATTTGAACTAAAACCACGA 58.702 36.000 0.00 0.00 0.00 4.35
2819 2909 6.206048 ACTCCCTAATTTGAACTAAAACCACG 59.794 38.462 0.00 0.00 0.00 4.94
2820 2910 7.520451 ACTCCCTAATTTGAACTAAAACCAC 57.480 36.000 0.00 0.00 0.00 4.16
2821 2911 8.219178 TGTACTCCCTAATTTGAACTAAAACCA 58.781 33.333 0.00 0.00 0.00 3.67
2822 2912 8.625786 TGTACTCCCTAATTTGAACTAAAACC 57.374 34.615 0.00 0.00 0.00 3.27
2828 2918 8.585018 CCAAAAATGTACTCCCTAATTTGAACT 58.415 33.333 0.00 0.00 0.00 3.01
2829 2919 8.581578 TCCAAAAATGTACTCCCTAATTTGAAC 58.418 33.333 0.00 0.00 0.00 3.18
2830 2920 8.713708 TCCAAAAATGTACTCCCTAATTTGAA 57.286 30.769 0.00 0.00 0.00 2.69
2831 2921 7.947890 ACTCCAAAAATGTACTCCCTAATTTGA 59.052 33.333 0.00 0.00 0.00 2.69
2832 2922 8.122472 ACTCCAAAAATGTACTCCCTAATTTG 57.878 34.615 0.00 0.00 0.00 2.32
2833 2923 8.721133 AACTCCAAAAATGTACTCCCTAATTT 57.279 30.769 0.00 0.00 0.00 1.82
2834 2924 8.721133 AAACTCCAAAAATGTACTCCCTAATT 57.279 30.769 0.00 0.00 0.00 1.40
2835 2925 8.721133 AAAACTCCAAAAATGTACTCCCTAAT 57.279 30.769 0.00 0.00 0.00 1.73
2836 2926 8.541899 AAAAACTCCAAAAATGTACTCCCTAA 57.458 30.769 0.00 0.00 0.00 2.69
2837 2927 9.643735 TTAAAAACTCCAAAAATGTACTCCCTA 57.356 29.630 0.00 0.00 0.00 3.53
2838 2928 8.541899 TTAAAAACTCCAAAAATGTACTCCCT 57.458 30.769 0.00 0.00 0.00 4.20
2839 2929 9.602568 TTTTAAAAACTCCAAAAATGTACTCCC 57.397 29.630 0.00 0.00 0.00 4.30
2903 2993 5.592282 ACAACATGAATTACATATTCCCGCA 59.408 36.000 0.00 0.00 37.46 5.69
2911 3001 6.566197 TGTGCACACAACATGAATTACATA 57.434 33.333 17.42 0.00 38.56 2.29
2954 3044 8.683550 TCTGTACACGTCAAAATAAGTCATAG 57.316 34.615 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.