Multiple sequence alignment - TraesCS5B01G050900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G050900 chr5B 100.000 2535 0 0 1 2535 55535386 55532852 0.000000e+00 4682.0
1 TraesCS5B01G050900 chr5B 97.962 1276 22 1 1264 2535 55515929 55514654 0.000000e+00 2209.0
2 TraesCS5B01G050900 chrUn 99.437 533 3 0 1895 2427 266529610 266530142 0.000000e+00 968.0
3 TraesCS5B01G050900 chrUn 99.250 533 4 0 1895 2427 264059677 264060209 0.000000e+00 963.0
4 TraesCS5B01G050900 chr3B 99.250 533 4 0 1895 2427 92311820 92311288 0.000000e+00 963.0
5 TraesCS5B01G050900 chr7D 99.062 533 5 0 1895 2427 382108931 382109463 0.000000e+00 957.0
6 TraesCS5B01G050900 chr6B 99.062 533 5 0 1895 2427 151233136 151233668 0.000000e+00 957.0
7 TraesCS5B01G050900 chr3A 99.062 533 5 0 1895 2427 633097566 633097034 0.000000e+00 957.0
8 TraesCS5B01G050900 chr1B 99.062 533 5 0 1895 2427 668818933 668819465 0.000000e+00 957.0
9 TraesCS5B01G050900 chr5A 89.367 790 41 17 714 1483 41474308 41473542 0.000000e+00 953.0
10 TraesCS5B01G050900 chr5A 95.283 106 5 0 2426 2531 41466801 41466696 4.340000e-38 169.0
11 TraesCS5B01G050900 chr5A 100.000 48 0 0 678 725 41474363 41474316 3.470000e-14 89.8
12 TraesCS5B01G050900 chr6A 98.874 533 6 0 1895 2427 597237621 597238153 0.000000e+00 952.0
13 TraesCS5B01G050900 chr5D 86.438 553 42 16 942 1484 52375209 52374680 2.190000e-160 575.0
14 TraesCS5B01G050900 chr5D 88.202 178 8 6 54 219 52392199 52392023 1.540000e-47 200.0
15 TraesCS5B01G050900 chr5D 95.283 106 5 0 2426 2531 52366113 52366008 4.340000e-38 169.0
16 TraesCS5B01G050900 chr5D 84.397 141 5 3 786 915 52375266 52375400 3.420000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G050900 chr5B 55532852 55535386 2534 True 4682.0 4682 100.0000 1 2535 1 chr5B.!!$R2 2534
1 TraesCS5B01G050900 chr5B 55514654 55515929 1275 True 2209.0 2209 97.9620 1264 2535 1 chr5B.!!$R1 1271
2 TraesCS5B01G050900 chrUn 266529610 266530142 532 False 968.0 968 99.4370 1895 2427 1 chrUn.!!$F2 532
3 TraesCS5B01G050900 chrUn 264059677 264060209 532 False 963.0 963 99.2500 1895 2427 1 chrUn.!!$F1 532
4 TraesCS5B01G050900 chr3B 92311288 92311820 532 True 963.0 963 99.2500 1895 2427 1 chr3B.!!$R1 532
5 TraesCS5B01G050900 chr7D 382108931 382109463 532 False 957.0 957 99.0620 1895 2427 1 chr7D.!!$F1 532
6 TraesCS5B01G050900 chr6B 151233136 151233668 532 False 957.0 957 99.0620 1895 2427 1 chr6B.!!$F1 532
7 TraesCS5B01G050900 chr3A 633097034 633097566 532 True 957.0 957 99.0620 1895 2427 1 chr3A.!!$R1 532
8 TraesCS5B01G050900 chr1B 668818933 668819465 532 False 957.0 957 99.0620 1895 2427 1 chr1B.!!$F1 532
9 TraesCS5B01G050900 chr5A 41473542 41474363 821 True 521.4 953 94.6835 678 1483 2 chr5A.!!$R2 805
10 TraesCS5B01G050900 chr6A 597237621 597238153 532 False 952.0 952 98.8740 1895 2427 1 chr6A.!!$F1 532
11 TraesCS5B01G050900 chr5D 52374680 52375209 529 True 575.0 575 86.4380 942 1484 1 chr5D.!!$R2 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.034896 GCGGTGTTTCTTCTGGGAGA 59.965 55.0 0.00 0.00 0.0 3.71 F
206 207 0.109132 CCCCAGAAGTTGCGCAAATC 60.109 55.0 26.87 24.42 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1564 0.586802 GGACAGACGAAACTTGTGGC 59.413 55.000 0.00 0.0 0.0 5.01 R
1535 1591 1.337823 CGAACCGGGAGACAGTTGAAT 60.338 52.381 6.32 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.558396 AATTTCATAAAATTTGACTCAAGGCAA 57.442 25.926 0.00 0.00 41.27 4.52
27 28 8.954950 TTTCATAAAATTTGACTCAAGGCAAA 57.045 26.923 13.16 13.16 38.25 3.68
28 29 9.558396 TTTCATAAAATTTGACTCAAGGCAAAT 57.442 25.926 16.39 16.39 44.17 2.32
29 30 8.537049 TCATAAAATTTGACTCAAGGCAAATG 57.463 30.769 21.42 12.11 42.17 2.32
30 31 8.149647 TCATAAAATTTGACTCAAGGCAAATGT 58.850 29.630 21.42 14.96 42.17 2.71
31 32 9.421806 CATAAAATTTGACTCAAGGCAAATGTA 57.578 29.630 21.42 16.84 42.17 2.29
32 33 9.995003 ATAAAATTTGACTCAAGGCAAATGTAA 57.005 25.926 21.42 11.69 42.17 2.41
33 34 7.951530 AAATTTGACTCAAGGCAAATGTAAG 57.048 32.000 21.42 0.00 42.17 2.34
34 35 6.899393 ATTTGACTCAAGGCAAATGTAAGA 57.101 33.333 20.35 0.00 41.63 2.10
35 36 6.899393 TTTGACTCAAGGCAAATGTAAGAT 57.101 33.333 6.94 0.00 0.00 2.40
36 37 5.885230 TGACTCAAGGCAAATGTAAGATG 57.115 39.130 0.00 0.00 0.00 2.90
37 38 4.156556 TGACTCAAGGCAAATGTAAGATGC 59.843 41.667 0.00 0.00 39.33 3.91
38 39 4.081406 ACTCAAGGCAAATGTAAGATGCA 58.919 39.130 0.00 0.00 41.80 3.96
39 40 4.523943 ACTCAAGGCAAATGTAAGATGCAA 59.476 37.500 0.00 0.00 41.80 4.08
40 41 5.063180 TCAAGGCAAATGTAAGATGCAAG 57.937 39.130 0.00 0.00 41.80 4.01
41 42 4.082081 TCAAGGCAAATGTAAGATGCAAGG 60.082 41.667 0.00 0.00 41.80 3.61
42 43 3.434309 AGGCAAATGTAAGATGCAAGGT 58.566 40.909 0.00 0.00 41.80 3.50
43 44 4.599041 AGGCAAATGTAAGATGCAAGGTA 58.401 39.130 0.00 0.00 41.80 3.08
44 45 4.641989 AGGCAAATGTAAGATGCAAGGTAG 59.358 41.667 0.00 0.00 41.80 3.18
45 46 4.640201 GGCAAATGTAAGATGCAAGGTAGA 59.360 41.667 0.00 0.00 41.80 2.59
46 47 5.125417 GGCAAATGTAAGATGCAAGGTAGAA 59.875 40.000 0.00 0.00 41.80 2.10
47 48 6.350110 GGCAAATGTAAGATGCAAGGTAGAAA 60.350 38.462 0.00 0.00 41.80 2.52
48 49 7.090173 GCAAATGTAAGATGCAAGGTAGAAAA 58.910 34.615 0.00 0.00 39.81 2.29
49 50 7.274250 GCAAATGTAAGATGCAAGGTAGAAAAG 59.726 37.037 0.00 0.00 39.81 2.27
50 51 8.514594 CAAATGTAAGATGCAAGGTAGAAAAGA 58.485 33.333 0.00 0.00 0.00 2.52
51 52 8.635765 AATGTAAGATGCAAGGTAGAAAAGAA 57.364 30.769 0.00 0.00 0.00 2.52
52 53 8.635765 ATGTAAGATGCAAGGTAGAAAAGAAA 57.364 30.769 0.00 0.00 0.00 2.52
53 54 7.871853 TGTAAGATGCAAGGTAGAAAAGAAAC 58.128 34.615 0.00 0.00 0.00 2.78
54 55 6.959639 AAGATGCAAGGTAGAAAAGAAACA 57.040 33.333 0.00 0.00 0.00 2.83
55 56 7.530426 AAGATGCAAGGTAGAAAAGAAACAT 57.470 32.000 0.00 0.00 0.00 2.71
56 57 7.150783 AGATGCAAGGTAGAAAAGAAACATC 57.849 36.000 0.00 0.00 0.00 3.06
57 58 6.716628 AGATGCAAGGTAGAAAAGAAACATCA 59.283 34.615 0.00 0.00 34.16 3.07
58 59 6.899393 TGCAAGGTAGAAAAGAAACATCAT 57.101 33.333 0.00 0.00 0.00 2.45
59 60 6.913170 TGCAAGGTAGAAAAGAAACATCATC 58.087 36.000 0.00 0.00 0.00 2.92
60 61 6.716628 TGCAAGGTAGAAAAGAAACATCATCT 59.283 34.615 0.00 0.00 0.00 2.90
61 62 7.025963 GCAAGGTAGAAAAGAAACATCATCTG 58.974 38.462 0.00 0.00 0.00 2.90
62 63 7.533426 CAAGGTAGAAAAGAAACATCATCTGG 58.467 38.462 0.00 0.00 0.00 3.86
63 64 6.784031 AGGTAGAAAAGAAACATCATCTGGT 58.216 36.000 0.00 0.00 0.00 4.00
64 65 7.234355 AGGTAGAAAAGAAACATCATCTGGTT 58.766 34.615 0.00 0.00 37.53 3.67
65 66 7.725844 AGGTAGAAAAGAAACATCATCTGGTTT 59.274 33.333 0.00 0.00 33.94 3.27
66 67 8.360390 GGTAGAAAAGAAACATCATCTGGTTTT 58.640 33.333 0.00 0.00 33.94 2.43
67 68 9.399403 GTAGAAAAGAAACATCATCTGGTTTTC 57.601 33.333 0.00 0.00 33.94 2.29
68 69 8.242729 AGAAAAGAAACATCATCTGGTTTTCT 57.757 30.769 0.00 0.00 33.94 2.52
69 70 8.355913 AGAAAAGAAACATCATCTGGTTTTCTC 58.644 33.333 0.00 0.00 33.94 2.87
70 71 7.830099 AAAGAAACATCATCTGGTTTTCTCT 57.170 32.000 0.00 0.00 33.94 3.10
71 72 6.814506 AGAAACATCATCTGGTTTTCTCTG 57.185 37.500 0.00 0.00 33.94 3.35
72 73 5.182760 AGAAACATCATCTGGTTTTCTCTGC 59.817 40.000 0.00 0.00 33.94 4.26
73 74 3.005554 ACATCATCTGGTTTTCTCTGCG 58.994 45.455 0.00 0.00 0.00 5.18
74 75 1.442769 TCATCTGGTTTTCTCTGCGC 58.557 50.000 0.00 0.00 0.00 6.09
75 76 1.002430 TCATCTGGTTTTCTCTGCGCT 59.998 47.619 9.73 0.00 0.00 5.92
76 77 1.808945 CATCTGGTTTTCTCTGCGCTT 59.191 47.619 9.73 0.00 0.00 4.68
77 78 2.831685 TCTGGTTTTCTCTGCGCTTA 57.168 45.000 9.73 0.00 0.00 3.09
78 79 2.413837 TCTGGTTTTCTCTGCGCTTAC 58.586 47.619 9.73 0.00 0.00 2.34
79 80 2.037251 TCTGGTTTTCTCTGCGCTTACT 59.963 45.455 9.73 0.00 0.00 2.24
80 81 3.257375 TCTGGTTTTCTCTGCGCTTACTA 59.743 43.478 9.73 0.00 0.00 1.82
81 82 4.081642 TCTGGTTTTCTCTGCGCTTACTAT 60.082 41.667 9.73 0.00 0.00 2.12
82 83 3.932710 TGGTTTTCTCTGCGCTTACTATG 59.067 43.478 9.73 0.00 0.00 2.23
83 84 3.242446 GGTTTTCTCTGCGCTTACTATGC 60.242 47.826 9.73 0.00 0.00 3.14
94 95 4.260334 GCTTACTATGCGGTGTTTCTTC 57.740 45.455 0.00 0.00 0.00 2.87
95 96 3.933332 GCTTACTATGCGGTGTTTCTTCT 59.067 43.478 0.00 0.00 0.00 2.85
96 97 4.201724 GCTTACTATGCGGTGTTTCTTCTG 60.202 45.833 0.00 0.00 0.00 3.02
97 98 2.699954 ACTATGCGGTGTTTCTTCTGG 58.300 47.619 0.00 0.00 0.00 3.86
98 99 2.009774 CTATGCGGTGTTTCTTCTGGG 58.990 52.381 0.00 0.00 0.00 4.45
99 100 0.400213 ATGCGGTGTTTCTTCTGGGA 59.600 50.000 0.00 0.00 0.00 4.37
100 101 0.250295 TGCGGTGTTTCTTCTGGGAG 60.250 55.000 0.00 0.00 0.00 4.30
101 102 0.034896 GCGGTGTTTCTTCTGGGAGA 59.965 55.000 0.00 0.00 0.00 3.71
102 103 1.339151 GCGGTGTTTCTTCTGGGAGAT 60.339 52.381 0.00 0.00 0.00 2.75
103 104 2.350522 CGGTGTTTCTTCTGGGAGATG 58.649 52.381 0.00 0.00 0.00 2.90
104 105 2.289694 CGGTGTTTCTTCTGGGAGATGT 60.290 50.000 0.00 0.00 0.00 3.06
105 106 3.077359 GGTGTTTCTTCTGGGAGATGTG 58.923 50.000 0.00 0.00 0.00 3.21
106 107 3.077359 GTGTTTCTTCTGGGAGATGTGG 58.923 50.000 0.00 0.00 0.00 4.17
107 108 2.040278 TGTTTCTTCTGGGAGATGTGGG 59.960 50.000 0.00 0.00 0.00 4.61
108 109 1.289160 TTCTTCTGGGAGATGTGGGG 58.711 55.000 0.00 0.00 0.00 4.96
109 110 0.621571 TCTTCTGGGAGATGTGGGGG 60.622 60.000 0.00 0.00 0.00 5.40
110 111 0.916358 CTTCTGGGAGATGTGGGGGT 60.916 60.000 0.00 0.00 0.00 4.95
111 112 0.914417 TTCTGGGAGATGTGGGGGTC 60.914 60.000 0.00 0.00 0.00 4.46
112 113 1.307343 CTGGGAGATGTGGGGGTCT 60.307 63.158 0.00 0.00 0.00 3.85
113 114 0.916358 CTGGGAGATGTGGGGGTCTT 60.916 60.000 0.00 0.00 0.00 3.01
114 115 0.914417 TGGGAGATGTGGGGGTCTTC 60.914 60.000 0.00 0.00 0.00 2.87
115 116 0.914417 GGGAGATGTGGGGGTCTTCA 60.914 60.000 0.00 0.00 0.00 3.02
116 117 0.991920 GGAGATGTGGGGGTCTTCAA 59.008 55.000 0.00 0.00 0.00 2.69
117 118 1.354368 GGAGATGTGGGGGTCTTCAAA 59.646 52.381 0.00 0.00 0.00 2.69
118 119 2.619074 GGAGATGTGGGGGTCTTCAAAG 60.619 54.545 0.00 0.00 0.00 2.77
119 120 2.040412 GAGATGTGGGGGTCTTCAAAGT 59.960 50.000 0.00 0.00 0.00 2.66
120 121 2.162681 GATGTGGGGGTCTTCAAAGTG 58.837 52.381 0.00 0.00 0.00 3.16
121 122 0.467290 TGTGGGGGTCTTCAAAGTGC 60.467 55.000 0.00 0.00 0.00 4.40
122 123 0.178990 GTGGGGGTCTTCAAAGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
123 124 0.555769 TGGGGGTCTTCAAAGTGCTT 59.444 50.000 0.00 0.00 0.00 3.91
124 125 1.777878 TGGGGGTCTTCAAAGTGCTTA 59.222 47.619 0.00 0.00 0.00 3.09
125 126 2.378547 TGGGGGTCTTCAAAGTGCTTAT 59.621 45.455 0.00 0.00 0.00 1.73
126 127 2.755103 GGGGGTCTTCAAAGTGCTTATG 59.245 50.000 0.00 0.00 0.00 1.90
127 128 2.164422 GGGGTCTTCAAAGTGCTTATGC 59.836 50.000 0.00 0.00 40.20 3.14
128 129 3.084786 GGGTCTTCAAAGTGCTTATGCT 58.915 45.455 1.96 0.00 40.48 3.79
129 130 3.507622 GGGTCTTCAAAGTGCTTATGCTT 59.492 43.478 1.96 0.00 40.48 3.91
130 131 4.379918 GGGTCTTCAAAGTGCTTATGCTTC 60.380 45.833 1.96 0.00 40.48 3.86
131 132 4.379918 GGTCTTCAAAGTGCTTATGCTTCC 60.380 45.833 1.96 0.00 40.48 3.46
132 133 4.457257 GTCTTCAAAGTGCTTATGCTTCCT 59.543 41.667 1.96 0.00 40.48 3.36
133 134 4.697352 TCTTCAAAGTGCTTATGCTTCCTC 59.303 41.667 1.96 0.00 40.48 3.71
134 135 4.019792 TCAAAGTGCTTATGCTTCCTCA 57.980 40.909 1.96 0.00 40.48 3.86
135 136 4.397420 TCAAAGTGCTTATGCTTCCTCAA 58.603 39.130 1.96 0.00 40.48 3.02
136 137 4.456911 TCAAAGTGCTTATGCTTCCTCAAG 59.543 41.667 1.96 0.00 40.48 3.02
137 138 3.710209 AGTGCTTATGCTTCCTCAAGT 57.290 42.857 1.96 0.00 40.48 3.16
138 139 3.604582 AGTGCTTATGCTTCCTCAAGTC 58.395 45.455 1.96 0.00 40.48 3.01
139 140 2.680339 GTGCTTATGCTTCCTCAAGTCC 59.320 50.000 1.96 0.00 40.48 3.85
140 141 2.305635 TGCTTATGCTTCCTCAAGTCCA 59.694 45.455 1.96 0.00 40.48 4.02
141 142 3.054139 TGCTTATGCTTCCTCAAGTCCAT 60.054 43.478 1.96 0.00 40.48 3.41
142 143 3.563390 GCTTATGCTTCCTCAAGTCCATC 59.437 47.826 0.00 0.00 36.03 3.51
143 144 2.725221 ATGCTTCCTCAAGTCCATCC 57.275 50.000 0.00 0.00 31.45 3.51
144 145 1.361204 TGCTTCCTCAAGTCCATCCA 58.639 50.000 0.00 0.00 31.45 3.41
145 146 1.918262 TGCTTCCTCAAGTCCATCCAT 59.082 47.619 0.00 0.00 31.45 3.41
146 147 2.092753 TGCTTCCTCAAGTCCATCCATC 60.093 50.000 0.00 0.00 31.45 3.51
147 148 2.747799 GCTTCCTCAAGTCCATCCATCC 60.748 54.545 0.00 0.00 31.45 3.51
148 149 2.268796 TCCTCAAGTCCATCCATCCA 57.731 50.000 0.00 0.00 0.00 3.41
149 150 2.780414 TCCTCAAGTCCATCCATCCAT 58.220 47.619 0.00 0.00 0.00 3.41
150 151 2.707791 TCCTCAAGTCCATCCATCCATC 59.292 50.000 0.00 0.00 0.00 3.51
151 152 2.224719 CCTCAAGTCCATCCATCCATCC 60.225 54.545 0.00 0.00 0.00 3.51
152 153 2.440627 CTCAAGTCCATCCATCCATCCA 59.559 50.000 0.00 0.00 0.00 3.41
153 154 2.173356 TCAAGTCCATCCATCCATCCAC 59.827 50.000 0.00 0.00 0.00 4.02
154 155 2.174210 CAAGTCCATCCATCCATCCACT 59.826 50.000 0.00 0.00 0.00 4.00
155 156 1.773052 AGTCCATCCATCCATCCACTG 59.227 52.381 0.00 0.00 0.00 3.66
157 158 0.848735 CCATCCATCCATCCACTGGT 59.151 55.000 0.00 0.00 46.08 4.00
158 159 1.202855 CCATCCATCCATCCACTGGTC 60.203 57.143 0.00 0.00 46.08 4.02
159 160 1.491754 CATCCATCCATCCACTGGTCA 59.508 52.381 0.00 0.00 46.08 4.02
160 161 1.667595 TCCATCCATCCACTGGTCAA 58.332 50.000 0.00 0.00 46.08 3.18
161 162 1.991813 TCCATCCATCCACTGGTCAAA 59.008 47.619 0.00 0.00 46.08 2.69
162 163 2.582172 TCCATCCATCCACTGGTCAAAT 59.418 45.455 0.00 0.00 46.08 2.32
163 164 2.691526 CCATCCATCCACTGGTCAAATG 59.308 50.000 0.00 0.00 46.08 2.32
164 165 3.623703 CATCCATCCACTGGTCAAATGA 58.376 45.455 0.00 0.00 46.08 2.57
165 166 3.805066 TCCATCCACTGGTCAAATGAA 57.195 42.857 0.00 0.00 46.08 2.57
166 167 3.689347 TCCATCCACTGGTCAAATGAAG 58.311 45.455 0.00 0.00 46.08 3.02
167 168 3.330405 TCCATCCACTGGTCAAATGAAGA 59.670 43.478 0.00 0.00 46.08 2.87
168 169 3.693085 CCATCCACTGGTCAAATGAAGAG 59.307 47.826 0.00 0.00 40.49 2.85
169 170 4.330250 CATCCACTGGTCAAATGAAGAGT 58.670 43.478 0.00 0.00 0.00 3.24
170 171 4.008074 TCCACTGGTCAAATGAAGAGTC 57.992 45.455 0.00 0.00 0.00 3.36
171 172 3.648067 TCCACTGGTCAAATGAAGAGTCT 59.352 43.478 0.00 0.00 0.00 3.24
172 173 3.750130 CCACTGGTCAAATGAAGAGTCTG 59.250 47.826 0.00 0.00 0.00 3.51
173 174 4.384056 CACTGGTCAAATGAAGAGTCTGT 58.616 43.478 0.00 0.00 0.00 3.41
174 175 4.212847 CACTGGTCAAATGAAGAGTCTGTG 59.787 45.833 0.00 0.00 0.00 3.66
175 176 4.101585 ACTGGTCAAATGAAGAGTCTGTGA 59.898 41.667 0.00 0.00 0.00 3.58
176 177 4.635223 TGGTCAAATGAAGAGTCTGTGAG 58.365 43.478 0.00 0.00 0.00 3.51
177 178 4.344968 TGGTCAAATGAAGAGTCTGTGAGA 59.655 41.667 0.00 0.00 0.00 3.27
178 179 4.928615 GGTCAAATGAAGAGTCTGTGAGAG 59.071 45.833 0.00 0.00 0.00 3.20
179 180 4.928615 GTCAAATGAAGAGTCTGTGAGAGG 59.071 45.833 0.00 0.00 0.00 3.69
180 181 4.835056 TCAAATGAAGAGTCTGTGAGAGGA 59.165 41.667 0.00 0.00 0.00 3.71
181 182 5.047448 TCAAATGAAGAGTCTGTGAGAGGAG 60.047 44.000 0.00 0.00 0.00 3.69
182 183 2.166829 TGAAGAGTCTGTGAGAGGAGC 58.833 52.381 0.00 0.00 0.00 4.70
183 184 2.224992 TGAAGAGTCTGTGAGAGGAGCT 60.225 50.000 0.00 0.00 0.00 4.09
184 185 1.838112 AGAGTCTGTGAGAGGAGCTG 58.162 55.000 0.00 0.00 0.00 4.24
185 186 0.173255 GAGTCTGTGAGAGGAGCTGC 59.827 60.000 0.00 0.00 0.00 5.25
186 187 1.217779 GTCTGTGAGAGGAGCTGCC 59.782 63.158 0.00 0.00 0.00 4.85
187 188 1.986757 TCTGTGAGAGGAGCTGCCC 60.987 63.158 0.00 0.00 37.37 5.36
188 189 3.005539 TGTGAGAGGAGCTGCCCC 61.006 66.667 0.00 0.00 37.37 5.80
189 190 3.791586 GTGAGAGGAGCTGCCCCC 61.792 72.222 0.00 0.00 37.37 5.40
203 204 2.597217 CCCCCAGAAGTTGCGCAA 60.597 61.111 21.02 21.02 0.00 4.85
204 205 2.199652 CCCCCAGAAGTTGCGCAAA 61.200 57.895 26.87 6.26 0.00 3.68
205 206 1.535204 CCCCCAGAAGTTGCGCAAAT 61.535 55.000 26.87 22.74 0.00 2.32
206 207 0.109132 CCCCAGAAGTTGCGCAAATC 60.109 55.000 26.87 24.42 0.00 2.17
207 208 0.597568 CCCAGAAGTTGCGCAAATCA 59.402 50.000 26.87 0.00 0.00 2.57
208 209 1.000385 CCCAGAAGTTGCGCAAATCAA 60.000 47.619 26.87 0.00 0.00 2.57
209 210 2.545532 CCCAGAAGTTGCGCAAATCAAA 60.546 45.455 26.87 0.00 0.00 2.69
210 211 2.727798 CCAGAAGTTGCGCAAATCAAAG 59.272 45.455 26.87 17.64 0.00 2.77
211 212 3.550639 CCAGAAGTTGCGCAAATCAAAGA 60.551 43.478 26.87 0.00 0.00 2.52
212 213 4.043750 CAGAAGTTGCGCAAATCAAAGAA 58.956 39.130 26.87 0.00 0.00 2.52
213 214 4.503734 CAGAAGTTGCGCAAATCAAAGAAA 59.496 37.500 26.87 0.00 0.00 2.52
214 215 5.176223 CAGAAGTTGCGCAAATCAAAGAAAT 59.824 36.000 26.87 5.50 0.00 2.17
215 216 6.363088 CAGAAGTTGCGCAAATCAAAGAAATA 59.637 34.615 26.87 0.00 0.00 1.40
216 217 6.922957 AGAAGTTGCGCAAATCAAAGAAATAA 59.077 30.769 26.87 0.00 0.00 1.40
217 218 7.437862 AGAAGTTGCGCAAATCAAAGAAATAAA 59.562 29.630 26.87 0.00 0.00 1.40
218 219 7.475771 AGTTGCGCAAATCAAAGAAATAAAA 57.524 28.000 26.87 0.00 0.00 1.52
219 220 7.566709 AGTTGCGCAAATCAAAGAAATAAAAG 58.433 30.769 26.87 0.00 0.00 2.27
220 221 7.437862 AGTTGCGCAAATCAAAGAAATAAAAGA 59.562 29.630 26.87 0.00 0.00 2.52
221 222 7.104326 TGCGCAAATCAAAGAAATAAAAGAC 57.896 32.000 8.16 0.00 0.00 3.01
222 223 6.129221 TGCGCAAATCAAAGAAATAAAAGACG 60.129 34.615 8.16 0.00 0.00 4.18
223 224 6.667386 GCGCAAATCAAAGAAATAAAAGACGG 60.667 38.462 0.30 0.00 0.00 4.79
224 225 6.362283 CGCAAATCAAAGAAATAAAAGACGGT 59.638 34.615 0.00 0.00 0.00 4.83
225 226 7.501515 GCAAATCAAAGAAATAAAAGACGGTG 58.498 34.615 0.00 0.00 0.00 4.94
226 227 7.381139 GCAAATCAAAGAAATAAAAGACGGTGA 59.619 33.333 0.00 0.00 0.00 4.02
227 228 9.410556 CAAATCAAAGAAATAAAAGACGGTGAT 57.589 29.630 0.00 0.00 0.00 3.06
230 231 8.842358 TCAAAGAAATAAAAGACGGTGATACT 57.158 30.769 0.00 0.00 0.00 2.12
231 232 9.932207 TCAAAGAAATAAAAGACGGTGATACTA 57.068 29.630 0.00 0.00 0.00 1.82
235 236 8.866956 AGAAATAAAAGACGGTGATACTAAACG 58.133 33.333 0.00 0.00 0.00 3.60
236 237 8.538409 AAATAAAAGACGGTGATACTAAACGT 57.462 30.769 0.00 0.00 40.85 3.99
237 238 5.834239 AAAAGACGGTGATACTAAACGTG 57.166 39.130 0.00 0.00 37.96 4.49
238 239 4.510038 AAGACGGTGATACTAAACGTGT 57.490 40.909 0.00 0.00 37.96 4.49
239 240 3.829948 AGACGGTGATACTAAACGTGTG 58.170 45.455 0.00 0.00 37.96 3.82
240 241 3.254166 AGACGGTGATACTAAACGTGTGT 59.746 43.478 0.00 0.00 37.96 3.72
241 242 3.981211 ACGGTGATACTAAACGTGTGTT 58.019 40.909 0.00 0.00 40.98 3.32
242 243 3.983344 ACGGTGATACTAAACGTGTGTTC 59.017 43.478 0.00 0.00 37.31 3.18
243 244 3.365820 CGGTGATACTAAACGTGTGTTCC 59.634 47.826 0.00 0.00 37.31 3.62
244 245 4.309099 GGTGATACTAAACGTGTGTTCCA 58.691 43.478 0.00 0.00 37.31 3.53
245 246 4.387862 GGTGATACTAAACGTGTGTTCCAG 59.612 45.833 0.00 0.00 37.31 3.86
246 247 5.224888 GTGATACTAAACGTGTGTTCCAGA 58.775 41.667 0.00 0.00 37.31 3.86
247 248 5.867716 GTGATACTAAACGTGTGTTCCAGAT 59.132 40.000 0.00 0.00 37.31 2.90
248 249 7.031372 GTGATACTAAACGTGTGTTCCAGATA 58.969 38.462 0.00 0.00 37.31 1.98
249 250 7.705325 GTGATACTAAACGTGTGTTCCAGATAT 59.295 37.037 0.00 0.00 37.31 1.63
250 251 8.905850 TGATACTAAACGTGTGTTCCAGATATA 58.094 33.333 0.00 0.00 37.31 0.86
251 252 9.909644 GATACTAAACGTGTGTTCCAGATATAT 57.090 33.333 0.00 0.00 37.31 0.86
254 255 9.745880 ACTAAACGTGTGTTCCAGATATATTAG 57.254 33.333 0.00 0.00 37.31 1.73
255 256 9.745880 CTAAACGTGTGTTCCAGATATATTAGT 57.254 33.333 0.00 0.00 37.31 2.24
257 258 9.745880 AAACGTGTGTTCCAGATATATTAGTAG 57.254 33.333 0.00 0.00 37.31 2.57
258 259 7.368833 ACGTGTGTTCCAGATATATTAGTAGC 58.631 38.462 0.00 0.00 0.00 3.58
259 260 7.013942 ACGTGTGTTCCAGATATATTAGTAGCA 59.986 37.037 0.00 0.00 0.00 3.49
260 261 7.326305 CGTGTGTTCCAGATATATTAGTAGCAC 59.674 40.741 0.00 0.00 0.00 4.40
261 262 8.361139 GTGTGTTCCAGATATATTAGTAGCACT 58.639 37.037 0.00 0.00 0.00 4.40
262 263 8.924303 TGTGTTCCAGATATATTAGTAGCACTT 58.076 33.333 0.00 0.00 0.00 3.16
263 264 9.413048 GTGTTCCAGATATATTAGTAGCACTTC 57.587 37.037 0.00 0.00 0.00 3.01
264 265 9.143155 TGTTCCAGATATATTAGTAGCACTTCA 57.857 33.333 0.00 0.00 0.00 3.02
265 266 9.413048 GTTCCAGATATATTAGTAGCACTTCAC 57.587 37.037 0.00 0.00 0.00 3.18
266 267 8.123639 TCCAGATATATTAGTAGCACTTCACC 57.876 38.462 0.00 0.00 0.00 4.02
267 268 7.178628 TCCAGATATATTAGTAGCACTTCACCC 59.821 40.741 0.00 0.00 0.00 4.61
268 269 7.324178 CAGATATATTAGTAGCACTTCACCCC 58.676 42.308 0.00 0.00 0.00 4.95
269 270 4.976540 ATATTAGTAGCACTTCACCCCC 57.023 45.455 0.00 0.00 0.00 5.40
270 271 2.337359 TTAGTAGCACTTCACCCCCT 57.663 50.000 0.00 0.00 0.00 4.79
271 272 3.478175 TTAGTAGCACTTCACCCCCTA 57.522 47.619 0.00 0.00 0.00 3.53
272 273 2.337359 AGTAGCACTTCACCCCCTAA 57.663 50.000 0.00 0.00 0.00 2.69
273 274 2.846950 AGTAGCACTTCACCCCCTAAT 58.153 47.619 0.00 0.00 0.00 1.73
274 275 2.772515 AGTAGCACTTCACCCCCTAATC 59.227 50.000 0.00 0.00 0.00 1.75
275 276 1.972588 AGCACTTCACCCCCTAATCT 58.027 50.000 0.00 0.00 0.00 2.40
276 277 2.279173 AGCACTTCACCCCCTAATCTT 58.721 47.619 0.00 0.00 0.00 2.40
277 278 2.649816 AGCACTTCACCCCCTAATCTTT 59.350 45.455 0.00 0.00 0.00 2.52
278 279 2.755103 GCACTTCACCCCCTAATCTTTG 59.245 50.000 0.00 0.00 0.00 2.77
279 280 3.814316 GCACTTCACCCCCTAATCTTTGT 60.814 47.826 0.00 0.00 0.00 2.83
280 281 4.407365 CACTTCACCCCCTAATCTTTGTT 58.593 43.478 0.00 0.00 0.00 2.83
281 282 4.218417 CACTTCACCCCCTAATCTTTGTTG 59.782 45.833 0.00 0.00 0.00 3.33
282 283 3.449746 TCACCCCCTAATCTTTGTTGG 57.550 47.619 0.00 0.00 0.00 3.77
283 284 2.990284 TCACCCCCTAATCTTTGTTGGA 59.010 45.455 0.00 0.00 0.00 3.53
284 285 3.010138 TCACCCCCTAATCTTTGTTGGAG 59.990 47.826 0.00 0.00 0.00 3.86
285 286 2.311841 ACCCCCTAATCTTTGTTGGAGG 59.688 50.000 0.00 0.00 0.00 4.30
286 287 2.379005 CCCCTAATCTTTGTTGGAGGC 58.621 52.381 0.00 0.00 0.00 4.70
287 288 2.291540 CCCCTAATCTTTGTTGGAGGCA 60.292 50.000 0.00 0.00 0.00 4.75
288 289 3.628257 CCCCTAATCTTTGTTGGAGGCAT 60.628 47.826 0.00 0.00 0.00 4.40
289 290 3.382546 CCCTAATCTTTGTTGGAGGCATG 59.617 47.826 0.00 0.00 0.00 4.06
290 291 3.181483 CCTAATCTTTGTTGGAGGCATGC 60.181 47.826 9.90 9.90 0.00 4.06
291 292 1.927487 ATCTTTGTTGGAGGCATGCA 58.073 45.000 21.36 0.00 0.00 3.96
292 293 1.250328 TCTTTGTTGGAGGCATGCAG 58.750 50.000 21.36 4.71 0.00 4.41
293 294 0.389426 CTTTGTTGGAGGCATGCAGC 60.389 55.000 21.36 10.33 44.65 5.25
303 304 2.872408 GCATGCAGCAGTAAAGGGA 58.128 52.632 14.21 0.00 44.79 4.20
304 305 1.176527 GCATGCAGCAGTAAAGGGAA 58.823 50.000 14.21 0.00 44.79 3.97
305 306 1.545582 GCATGCAGCAGTAAAGGGAAA 59.454 47.619 14.21 0.00 44.79 3.13
306 307 2.029110 GCATGCAGCAGTAAAGGGAAAA 60.029 45.455 14.21 0.00 44.79 2.29
307 308 3.368739 GCATGCAGCAGTAAAGGGAAAAT 60.369 43.478 14.21 0.00 44.79 1.82
308 309 4.427312 CATGCAGCAGTAAAGGGAAAATC 58.573 43.478 0.00 0.00 0.00 2.17
309 310 3.495331 TGCAGCAGTAAAGGGAAAATCA 58.505 40.909 0.00 0.00 0.00 2.57
310 311 3.507233 TGCAGCAGTAAAGGGAAAATCAG 59.493 43.478 0.00 0.00 0.00 2.90
311 312 3.119352 GCAGCAGTAAAGGGAAAATCAGG 60.119 47.826 0.00 0.00 0.00 3.86
312 313 4.335416 CAGCAGTAAAGGGAAAATCAGGA 58.665 43.478 0.00 0.00 0.00 3.86
313 314 4.766891 CAGCAGTAAAGGGAAAATCAGGAA 59.233 41.667 0.00 0.00 0.00 3.36
314 315 5.243730 CAGCAGTAAAGGGAAAATCAGGAAA 59.756 40.000 0.00 0.00 0.00 3.13
315 316 5.838521 AGCAGTAAAGGGAAAATCAGGAAAA 59.161 36.000 0.00 0.00 0.00 2.29
316 317 6.326323 AGCAGTAAAGGGAAAATCAGGAAAAA 59.674 34.615 0.00 0.00 0.00 1.94
340 341 9.739276 AAAAATGTATCCATGAAGTAGACAAGA 57.261 29.630 0.00 0.00 0.00 3.02
341 342 8.954950 AAATGTATCCATGAAGTAGACAAGAG 57.045 34.615 0.00 0.00 0.00 2.85
342 343 7.904558 ATGTATCCATGAAGTAGACAAGAGA 57.095 36.000 0.00 0.00 0.00 3.10
343 344 7.718334 TGTATCCATGAAGTAGACAAGAGAA 57.282 36.000 0.00 0.00 0.00 2.87
344 345 8.134202 TGTATCCATGAAGTAGACAAGAGAAA 57.866 34.615 0.00 0.00 0.00 2.52
345 346 8.253810 TGTATCCATGAAGTAGACAAGAGAAAG 58.746 37.037 0.00 0.00 0.00 2.62
346 347 6.918067 TCCATGAAGTAGACAAGAGAAAGA 57.082 37.500 0.00 0.00 0.00 2.52
347 348 7.303182 TCCATGAAGTAGACAAGAGAAAGAA 57.697 36.000 0.00 0.00 0.00 2.52
348 349 7.735917 TCCATGAAGTAGACAAGAGAAAGAAA 58.264 34.615 0.00 0.00 0.00 2.52
349 350 8.210946 TCCATGAAGTAGACAAGAGAAAGAAAA 58.789 33.333 0.00 0.00 0.00 2.29
350 351 8.840321 CCATGAAGTAGACAAGAGAAAGAAAAA 58.160 33.333 0.00 0.00 0.00 1.94
424 425 9.528847 CTAAAAAGAAGAAAAACACAAAACTGC 57.471 29.630 0.00 0.00 0.00 4.40
425 426 7.489574 AAAAGAAGAAAAACACAAAACTGCA 57.510 28.000 0.00 0.00 0.00 4.41
426 427 6.466308 AAGAAGAAAAACACAAAACTGCAC 57.534 33.333 0.00 0.00 0.00 4.57
427 428 5.537188 AGAAGAAAAACACAAAACTGCACA 58.463 33.333 0.00 0.00 0.00 4.57
428 429 5.988561 AGAAGAAAAACACAAAACTGCACAA 59.011 32.000 0.00 0.00 0.00 3.33
429 430 5.844301 AGAAAAACACAAAACTGCACAAG 57.156 34.783 0.00 0.00 0.00 3.16
430 431 5.296748 AGAAAAACACAAAACTGCACAAGT 58.703 33.333 0.00 0.00 42.60 3.16
438 439 1.512926 AACTGCACAAGTTCTAGCCG 58.487 50.000 0.00 0.00 46.60 5.52
439 440 0.951040 ACTGCACAAGTTCTAGCCGC 60.951 55.000 0.00 0.00 34.57 6.53
440 441 0.671781 CTGCACAAGTTCTAGCCGCT 60.672 55.000 0.00 0.00 0.00 5.52
441 442 0.670546 TGCACAAGTTCTAGCCGCTC 60.671 55.000 0.00 0.00 0.00 5.03
442 443 0.390472 GCACAAGTTCTAGCCGCTCT 60.390 55.000 0.00 0.00 0.00 4.09
443 444 1.354040 CACAAGTTCTAGCCGCTCTG 58.646 55.000 0.00 0.00 0.00 3.35
444 445 1.067565 CACAAGTTCTAGCCGCTCTGA 60.068 52.381 0.00 0.00 0.00 3.27
445 446 1.618837 ACAAGTTCTAGCCGCTCTGAA 59.381 47.619 0.00 0.03 0.00 3.02
446 447 2.234908 ACAAGTTCTAGCCGCTCTGAAT 59.765 45.455 0.00 0.00 0.00 2.57
447 448 3.447586 ACAAGTTCTAGCCGCTCTGAATA 59.552 43.478 0.00 0.00 0.00 1.75
448 449 4.081642 ACAAGTTCTAGCCGCTCTGAATAA 60.082 41.667 0.00 0.00 0.00 1.40
449 450 4.946478 AGTTCTAGCCGCTCTGAATAAT 57.054 40.909 0.00 0.00 0.00 1.28
450 451 6.183360 ACAAGTTCTAGCCGCTCTGAATAATA 60.183 38.462 0.00 0.00 0.00 0.98
451 452 6.406692 AGTTCTAGCCGCTCTGAATAATAA 57.593 37.500 0.00 0.00 0.00 1.40
452 453 6.998802 AGTTCTAGCCGCTCTGAATAATAAT 58.001 36.000 0.00 0.00 0.00 1.28
453 454 8.123639 AGTTCTAGCCGCTCTGAATAATAATA 57.876 34.615 0.00 0.00 0.00 0.98
454 455 8.585881 AGTTCTAGCCGCTCTGAATAATAATAA 58.414 33.333 0.00 0.00 0.00 1.40
455 456 9.372369 GTTCTAGCCGCTCTGAATAATAATAAT 57.628 33.333 0.00 0.00 0.00 1.28
515 516 8.940768 ACAACACATAATTAATTGCATAACCC 57.059 30.769 11.05 0.00 0.00 4.11
516 517 8.535335 ACAACACATAATTAATTGCATAACCCA 58.465 29.630 11.05 0.00 0.00 4.51
517 518 9.033481 CAACACATAATTAATTGCATAACCCAG 57.967 33.333 11.05 0.00 0.00 4.45
518 519 8.532186 ACACATAATTAATTGCATAACCCAGA 57.468 30.769 11.05 0.00 0.00 3.86
519 520 8.413229 ACACATAATTAATTGCATAACCCAGAC 58.587 33.333 11.05 0.00 0.00 3.51
520 521 7.591057 CACATAATTAATTGCATAACCCAGACG 59.409 37.037 11.05 0.00 0.00 4.18
521 522 7.284489 ACATAATTAATTGCATAACCCAGACGT 59.716 33.333 11.05 0.00 0.00 4.34
522 523 8.779303 CATAATTAATTGCATAACCCAGACGTA 58.221 33.333 11.05 0.00 0.00 3.57
523 524 7.633193 AATTAATTGCATAACCCAGACGTAA 57.367 32.000 0.00 0.00 0.00 3.18
524 525 4.957759 AATTGCATAACCCAGACGTAAC 57.042 40.909 0.00 0.00 0.00 2.50
525 526 3.688694 TTGCATAACCCAGACGTAACT 57.311 42.857 0.00 0.00 0.00 2.24
526 527 4.804868 TTGCATAACCCAGACGTAACTA 57.195 40.909 0.00 0.00 0.00 2.24
527 528 4.114058 TGCATAACCCAGACGTAACTAC 57.886 45.455 0.00 0.00 0.00 2.73
543 544 7.507672 CGTAACTACGTCATCTTCTTCATTT 57.492 36.000 0.00 0.00 44.13 2.32
544 545 7.950236 CGTAACTACGTCATCTTCTTCATTTT 58.050 34.615 0.00 0.00 44.13 1.82
545 546 8.102716 CGTAACTACGTCATCTTCTTCATTTTC 58.897 37.037 0.00 0.00 44.13 2.29
546 547 7.962964 AACTACGTCATCTTCTTCATTTTCA 57.037 32.000 0.00 0.00 0.00 2.69
547 548 7.588143 ACTACGTCATCTTCTTCATTTTCAG 57.412 36.000 0.00 0.00 0.00 3.02
548 549 7.378966 ACTACGTCATCTTCTTCATTTTCAGA 58.621 34.615 0.00 0.00 0.00 3.27
549 550 6.473397 ACGTCATCTTCTTCATTTTCAGAC 57.527 37.500 0.00 0.00 0.00 3.51
550 551 5.991606 ACGTCATCTTCTTCATTTTCAGACA 59.008 36.000 0.00 0.00 0.00 3.41
551 552 6.483307 ACGTCATCTTCTTCATTTTCAGACAA 59.517 34.615 0.00 0.00 0.00 3.18
552 553 7.173907 ACGTCATCTTCTTCATTTTCAGACAAT 59.826 33.333 0.00 0.00 0.00 2.71
553 554 7.691463 CGTCATCTTCTTCATTTTCAGACAATC 59.309 37.037 0.00 0.00 0.00 2.67
554 555 7.967303 GTCATCTTCTTCATTTTCAGACAATCC 59.033 37.037 0.00 0.00 0.00 3.01
555 556 7.666804 TCATCTTCTTCATTTTCAGACAATCCA 59.333 33.333 0.00 0.00 0.00 3.41
556 557 8.467598 CATCTTCTTCATTTTCAGACAATCCAT 58.532 33.333 0.00 0.00 0.00 3.41
557 558 7.823665 TCTTCTTCATTTTCAGACAATCCATG 58.176 34.615 0.00 0.00 0.00 3.66
558 559 6.519679 TCTTCATTTTCAGACAATCCATGG 57.480 37.500 4.97 4.97 0.00 3.66
559 560 4.724074 TCATTTTCAGACAATCCATGGC 57.276 40.909 6.96 0.00 37.30 4.40
560 561 3.448301 TCATTTTCAGACAATCCATGGCC 59.552 43.478 6.96 0.00 38.06 5.36
561 562 2.601240 TTTCAGACAATCCATGGCCA 57.399 45.000 8.56 8.56 38.06 5.36
562 563 1.838112 TTCAGACAATCCATGGCCAC 58.162 50.000 8.16 0.00 38.06 5.01
563 564 0.392863 TCAGACAATCCATGGCCACG 60.393 55.000 8.16 0.00 38.06 4.94
564 565 0.392863 CAGACAATCCATGGCCACGA 60.393 55.000 8.16 7.32 38.06 4.35
565 566 0.392998 AGACAATCCATGGCCACGAC 60.393 55.000 8.16 0.00 38.06 4.34
566 567 0.676466 GACAATCCATGGCCACGACA 60.676 55.000 8.16 0.00 0.00 4.35
567 568 0.677731 ACAATCCATGGCCACGACAG 60.678 55.000 8.16 5.62 0.00 3.51
568 569 1.077501 AATCCATGGCCACGACAGG 60.078 57.895 8.16 5.54 0.00 4.00
569 570 1.561769 AATCCATGGCCACGACAGGA 61.562 55.000 8.16 11.52 0.00 3.86
570 571 1.976132 ATCCATGGCCACGACAGGAG 61.976 60.000 8.16 0.00 0.00 3.69
571 572 2.659063 CCATGGCCACGACAGGAGA 61.659 63.158 8.16 0.00 0.00 3.71
572 573 1.524002 CATGGCCACGACAGGAGAT 59.476 57.895 8.16 0.00 0.00 2.75
573 574 0.531532 CATGGCCACGACAGGAGATC 60.532 60.000 8.16 0.00 0.00 2.75
574 575 0.977627 ATGGCCACGACAGGAGATCA 60.978 55.000 8.16 0.00 0.00 2.92
575 576 1.153549 GGCCACGACAGGAGATCAC 60.154 63.158 0.00 0.00 0.00 3.06
576 577 1.608717 GGCCACGACAGGAGATCACT 61.609 60.000 0.00 0.00 0.00 3.41
577 578 0.247736 GCCACGACAGGAGATCACTT 59.752 55.000 0.00 0.00 0.00 3.16
578 579 1.476891 GCCACGACAGGAGATCACTTA 59.523 52.381 0.00 0.00 0.00 2.24
579 580 2.101582 GCCACGACAGGAGATCACTTAT 59.898 50.000 0.00 0.00 0.00 1.73
580 581 3.318275 GCCACGACAGGAGATCACTTATA 59.682 47.826 0.00 0.00 0.00 0.98
581 582 4.793353 GCCACGACAGGAGATCACTTATAC 60.793 50.000 0.00 0.00 0.00 1.47
582 583 4.261656 CCACGACAGGAGATCACTTATACC 60.262 50.000 0.00 0.00 0.00 2.73
583 584 3.890147 ACGACAGGAGATCACTTATACCC 59.110 47.826 0.00 0.00 0.00 3.69
584 585 3.256136 CGACAGGAGATCACTTATACCCC 59.744 52.174 0.00 0.00 0.00 4.95
585 586 3.579151 GACAGGAGATCACTTATACCCCC 59.421 52.174 0.00 0.00 0.00 5.40
586 587 3.210074 ACAGGAGATCACTTATACCCCCT 59.790 47.826 0.00 0.00 0.00 4.79
587 588 3.835395 CAGGAGATCACTTATACCCCCTC 59.165 52.174 0.00 0.00 0.00 4.30
588 589 3.735442 AGGAGATCACTTATACCCCCTCT 59.265 47.826 0.00 0.00 0.00 3.69
589 590 3.835395 GGAGATCACTTATACCCCCTCTG 59.165 52.174 0.00 0.00 0.00 3.35
590 591 4.484912 GAGATCACTTATACCCCCTCTGT 58.515 47.826 0.00 0.00 0.00 3.41
591 592 4.897051 AGATCACTTATACCCCCTCTGTT 58.103 43.478 0.00 0.00 0.00 3.16
592 593 5.289510 AGATCACTTATACCCCCTCTGTTT 58.710 41.667 0.00 0.00 0.00 2.83
593 594 5.367060 AGATCACTTATACCCCCTCTGTTTC 59.633 44.000 0.00 0.00 0.00 2.78
594 595 4.695606 TCACTTATACCCCCTCTGTTTCT 58.304 43.478 0.00 0.00 0.00 2.52
595 596 5.098663 TCACTTATACCCCCTCTGTTTCTT 58.901 41.667 0.00 0.00 0.00 2.52
596 597 5.550403 TCACTTATACCCCCTCTGTTTCTTT 59.450 40.000 0.00 0.00 0.00 2.52
597 598 6.045106 TCACTTATACCCCCTCTGTTTCTTTT 59.955 38.462 0.00 0.00 0.00 2.27
598 599 6.719829 CACTTATACCCCCTCTGTTTCTTTTT 59.280 38.462 0.00 0.00 0.00 1.94
599 600 7.886446 CACTTATACCCCCTCTGTTTCTTTTTA 59.114 37.037 0.00 0.00 0.00 1.52
600 601 7.886970 ACTTATACCCCCTCTGTTTCTTTTTAC 59.113 37.037 0.00 0.00 0.00 2.01
601 602 4.808767 ACCCCCTCTGTTTCTTTTTACT 57.191 40.909 0.00 0.00 0.00 2.24
602 603 4.726583 ACCCCCTCTGTTTCTTTTTACTC 58.273 43.478 0.00 0.00 0.00 2.59
603 604 3.751698 CCCCCTCTGTTTCTTTTTACTCG 59.248 47.826 0.00 0.00 0.00 4.18
604 605 3.751698 CCCCTCTGTTTCTTTTTACTCGG 59.248 47.826 0.00 0.00 0.00 4.63
605 606 3.188667 CCCTCTGTTTCTTTTTACTCGGC 59.811 47.826 0.00 0.00 0.00 5.54
606 607 3.813166 CCTCTGTTTCTTTTTACTCGGCA 59.187 43.478 0.00 0.00 0.00 5.69
607 608 4.455877 CCTCTGTTTCTTTTTACTCGGCAT 59.544 41.667 0.00 0.00 0.00 4.40
608 609 5.642063 CCTCTGTTTCTTTTTACTCGGCATA 59.358 40.000 0.00 0.00 0.00 3.14
609 610 6.183360 CCTCTGTTTCTTTTTACTCGGCATAG 60.183 42.308 0.00 0.00 0.00 2.23
610 611 6.228258 TCTGTTTCTTTTTACTCGGCATAGT 58.772 36.000 0.00 0.00 0.00 2.12
611 612 7.380536 TCTGTTTCTTTTTACTCGGCATAGTA 58.619 34.615 0.00 0.00 0.00 1.82
612 613 8.038944 TCTGTTTCTTTTTACTCGGCATAGTAT 58.961 33.333 0.00 0.00 32.16 2.12
613 614 8.556213 TGTTTCTTTTTACTCGGCATAGTATT 57.444 30.769 0.00 0.00 32.16 1.89
614 615 9.656040 TGTTTCTTTTTACTCGGCATAGTATTA 57.344 29.630 0.00 0.00 32.16 0.98
616 617 8.882415 TTCTTTTTACTCGGCATAGTATTAGG 57.118 34.615 0.00 0.00 32.16 2.69
617 618 8.015185 TCTTTTTACTCGGCATAGTATTAGGT 57.985 34.615 0.00 0.00 32.16 3.08
618 619 8.480501 TCTTTTTACTCGGCATAGTATTAGGTT 58.519 33.333 0.00 0.00 32.16 3.50
619 620 9.106070 CTTTTTACTCGGCATAGTATTAGGTTT 57.894 33.333 0.00 0.00 32.16 3.27
667 668 6.824305 AAAAATACAGGAATGAGGAGTGTG 57.176 37.500 0.00 0.00 0.00 3.82
668 669 5.505181 AAATACAGGAATGAGGAGTGTGT 57.495 39.130 0.00 0.00 0.00 3.72
669 670 2.847327 ACAGGAATGAGGAGTGTGTG 57.153 50.000 0.00 0.00 0.00 3.82
670 671 2.329267 ACAGGAATGAGGAGTGTGTGA 58.671 47.619 0.00 0.00 0.00 3.58
671 672 2.301296 ACAGGAATGAGGAGTGTGTGAG 59.699 50.000 0.00 0.00 0.00 3.51
672 673 2.564504 CAGGAATGAGGAGTGTGTGAGA 59.435 50.000 0.00 0.00 0.00 3.27
673 674 2.830923 AGGAATGAGGAGTGTGTGAGAG 59.169 50.000 0.00 0.00 0.00 3.20
674 675 2.093764 GGAATGAGGAGTGTGTGAGAGG 60.094 54.545 0.00 0.00 0.00 3.69
675 676 2.612285 ATGAGGAGTGTGTGAGAGGA 57.388 50.000 0.00 0.00 0.00 3.71
676 677 1.916506 TGAGGAGTGTGTGAGAGGAG 58.083 55.000 0.00 0.00 0.00 3.69
759 779 8.915036 TGGTCAATACTCTCTTAGAAGGTAATC 58.085 37.037 0.00 0.00 0.00 1.75
786 806 6.676189 AGAGGGACCATCTTAAAATCTCTCTT 59.324 38.462 1.91 0.00 43.28 2.85
814 834 3.805108 GCTCAAATGAGGAGTGTGTGACT 60.805 47.826 12.09 0.00 42.29 3.41
815 835 3.732212 TCAAATGAGGAGTGTGTGACTG 58.268 45.455 0.00 0.00 33.83 3.51
849 869 2.188817 AGCTGTCCCCGTATCTTTTCT 58.811 47.619 0.00 0.00 0.00 2.52
923 954 4.931002 GCACAGCACAACATTTTGGATTAT 59.069 37.500 0.00 0.00 37.00 1.28
924 955 5.163933 GCACAGCACAACATTTTGGATTATG 60.164 40.000 0.00 0.00 37.00 1.90
925 956 4.931002 ACAGCACAACATTTTGGATTATGC 59.069 37.500 0.00 0.00 37.00 3.14
978 1013 3.558746 CCATGGCTGGCTATAAGAAGAGG 60.559 52.174 0.00 0.00 35.23 3.69
1035 1070 0.253394 CCCTTCCTTCCTTCCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
1055 1090 3.560105 CTCCCTTCATTCCTTCATTCCC 58.440 50.000 0.00 0.00 0.00 3.97
1073 1108 1.227764 CTGGAGACATGGCGATGGG 60.228 63.158 13.62 0.00 41.51 4.00
1076 1111 2.692368 AGACATGGCGATGGGGGT 60.692 61.111 13.62 0.00 33.39 4.95
1177 1221 6.724351 TGAAAGAAATTCATCCATCTGGAGA 58.276 36.000 5.02 0.43 43.08 3.71
1191 1235 1.815003 CTGGAGAAACATGGCACTTCC 59.185 52.381 0.00 0.00 0.00 3.46
1196 1240 1.244019 AAACATGGCACTTCCTCGGC 61.244 55.000 0.00 0.00 35.26 5.54
1238 1282 3.892918 GCAGATGTTATGCTGTCATCC 57.107 47.619 0.00 0.00 40.59 3.51
1251 1295 2.442878 CTGTCATCCATCCATACCCCAA 59.557 50.000 0.00 0.00 0.00 4.12
1273 1321 7.349711 CCAATTCATTGTGCAAAGAAGAAAAG 58.650 34.615 8.26 0.00 36.06 2.27
1508 1564 5.593095 ACAAGATCCATTTCCACATGATCAG 59.407 40.000 0.00 0.00 0.00 2.90
1526 1582 1.261619 CAGCCACAAGTTTCGTCTGTC 59.738 52.381 0.00 0.00 0.00 3.51
1611 1671 6.098124 TGTTCCTGTTGTTTTCATTTCATCCT 59.902 34.615 0.00 0.00 0.00 3.24
1725 1785 4.202111 CGAAACCCAGAAAACAACAAGGAT 60.202 41.667 0.00 0.00 0.00 3.24
1727 1787 3.909732 ACCCAGAAAACAACAAGGATCA 58.090 40.909 0.00 0.00 0.00 2.92
1748 1808 5.773575 TCATAACCAACAATTTTAAGCGCA 58.226 33.333 11.47 0.00 0.00 6.09
1755 1815 6.926272 ACCAACAATTTTAAGCGCAAGAATTA 59.074 30.769 11.47 0.00 43.02 1.40
2062 2122 6.127054 TGACTCATTAGATCCACGAATTTCCT 60.127 38.462 0.00 0.00 0.00 3.36
2339 2399 1.043116 AAGGATCACCGATCTCGCCA 61.043 55.000 4.12 0.00 38.91 5.69
2370 2430 4.591929 TCAATCATTCCTGCATCAACTCA 58.408 39.130 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.558396 TTGCCTTGAGTCAAATTTTATGAAATT 57.442 25.926 7.06 2.50 45.06 1.82
1 2 9.558396 TTTGCCTTGAGTCAAATTTTATGAAAT 57.442 25.926 7.06 0.00 37.06 2.17
2 3 8.954950 TTTGCCTTGAGTCAAATTTTATGAAA 57.045 26.923 7.06 0.00 0.00 2.69
3 4 8.991026 CATTTGCCTTGAGTCAAATTTTATGAA 58.009 29.630 7.06 0.00 39.92 2.57
4 5 8.149647 ACATTTGCCTTGAGTCAAATTTTATGA 58.850 29.630 7.06 0.00 39.92 2.15
5 6 8.314143 ACATTTGCCTTGAGTCAAATTTTATG 57.686 30.769 7.06 10.25 39.92 1.90
6 7 9.995003 TTACATTTGCCTTGAGTCAAATTTTAT 57.005 25.926 7.06 0.00 39.92 1.40
7 8 9.474920 CTTACATTTGCCTTGAGTCAAATTTTA 57.525 29.630 7.06 0.00 39.92 1.52
8 9 8.203485 TCTTACATTTGCCTTGAGTCAAATTTT 58.797 29.630 7.06 0.00 39.92 1.82
9 10 7.725251 TCTTACATTTGCCTTGAGTCAAATTT 58.275 30.769 7.06 0.00 39.92 1.82
10 11 7.288810 TCTTACATTTGCCTTGAGTCAAATT 57.711 32.000 7.06 0.00 39.92 1.82
11 12 6.899393 TCTTACATTTGCCTTGAGTCAAAT 57.101 33.333 7.06 0.00 41.88 2.32
12 13 6.680810 CATCTTACATTTGCCTTGAGTCAAA 58.319 36.000 7.06 0.00 36.72 2.69
13 14 5.335897 GCATCTTACATTTGCCTTGAGTCAA 60.336 40.000 5.25 5.25 0.00 3.18
14 15 4.156556 GCATCTTACATTTGCCTTGAGTCA 59.843 41.667 0.00 0.00 0.00 3.41
15 16 4.156556 TGCATCTTACATTTGCCTTGAGTC 59.843 41.667 0.00 0.00 35.51 3.36
16 17 4.081406 TGCATCTTACATTTGCCTTGAGT 58.919 39.130 0.00 0.00 35.51 3.41
17 18 4.707030 TGCATCTTACATTTGCCTTGAG 57.293 40.909 0.00 0.00 35.51 3.02
18 19 4.082081 CCTTGCATCTTACATTTGCCTTGA 60.082 41.667 0.00 0.00 35.51 3.02
19 20 4.178540 CCTTGCATCTTACATTTGCCTTG 58.821 43.478 0.00 0.00 35.51 3.61
20 21 3.834231 ACCTTGCATCTTACATTTGCCTT 59.166 39.130 0.00 0.00 35.51 4.35
21 22 3.434309 ACCTTGCATCTTACATTTGCCT 58.566 40.909 0.00 0.00 35.51 4.75
22 23 3.874392 ACCTTGCATCTTACATTTGCC 57.126 42.857 0.00 0.00 35.51 4.52
23 24 5.818136 TCTACCTTGCATCTTACATTTGC 57.182 39.130 0.00 0.00 36.91 3.68
24 25 8.514594 TCTTTTCTACCTTGCATCTTACATTTG 58.485 33.333 0.00 0.00 0.00 2.32
25 26 8.635765 TCTTTTCTACCTTGCATCTTACATTT 57.364 30.769 0.00 0.00 0.00 2.32
26 27 8.635765 TTCTTTTCTACCTTGCATCTTACATT 57.364 30.769 0.00 0.00 0.00 2.71
27 28 8.515414 GTTTCTTTTCTACCTTGCATCTTACAT 58.485 33.333 0.00 0.00 0.00 2.29
28 29 7.500892 TGTTTCTTTTCTACCTTGCATCTTACA 59.499 33.333 0.00 0.00 0.00 2.41
29 30 7.871853 TGTTTCTTTTCTACCTTGCATCTTAC 58.128 34.615 0.00 0.00 0.00 2.34
30 31 8.635765 ATGTTTCTTTTCTACCTTGCATCTTA 57.364 30.769 0.00 0.00 0.00 2.10
31 32 6.959639 TGTTTCTTTTCTACCTTGCATCTT 57.040 33.333 0.00 0.00 0.00 2.40
32 33 6.716628 TGATGTTTCTTTTCTACCTTGCATCT 59.283 34.615 0.00 0.00 32.70 2.90
33 34 6.913170 TGATGTTTCTTTTCTACCTTGCATC 58.087 36.000 0.00 0.00 0.00 3.91
34 35 6.899393 TGATGTTTCTTTTCTACCTTGCAT 57.101 33.333 0.00 0.00 0.00 3.96
35 36 6.716628 AGATGATGTTTCTTTTCTACCTTGCA 59.283 34.615 0.00 0.00 0.00 4.08
36 37 7.025963 CAGATGATGTTTCTTTTCTACCTTGC 58.974 38.462 0.00 0.00 0.00 4.01
37 38 7.175641 ACCAGATGATGTTTCTTTTCTACCTTG 59.824 37.037 0.00 0.00 0.00 3.61
38 39 7.234355 ACCAGATGATGTTTCTTTTCTACCTT 58.766 34.615 0.00 0.00 0.00 3.50
39 40 6.784031 ACCAGATGATGTTTCTTTTCTACCT 58.216 36.000 0.00 0.00 0.00 3.08
40 41 7.454260 AACCAGATGATGTTTCTTTTCTACC 57.546 36.000 0.00 0.00 0.00 3.18
41 42 9.399403 GAAAACCAGATGATGTTTCTTTTCTAC 57.601 33.333 0.00 0.00 33.76 2.59
42 43 9.354673 AGAAAACCAGATGATGTTTCTTTTCTA 57.645 29.630 0.00 0.00 33.76 2.10
43 44 8.242729 AGAAAACCAGATGATGTTTCTTTTCT 57.757 30.769 0.00 0.00 33.76 2.52
44 45 8.355913 AGAGAAAACCAGATGATGTTTCTTTTC 58.644 33.333 0.00 0.00 33.76 2.29
45 46 8.139989 CAGAGAAAACCAGATGATGTTTCTTTT 58.860 33.333 0.00 0.00 33.76 2.27
46 47 7.655490 CAGAGAAAACCAGATGATGTTTCTTT 58.345 34.615 0.00 0.00 33.76 2.52
47 48 6.294397 GCAGAGAAAACCAGATGATGTTTCTT 60.294 38.462 0.00 0.00 33.76 2.52
48 49 5.182760 GCAGAGAAAACCAGATGATGTTTCT 59.817 40.000 0.00 0.00 33.76 2.52
49 50 5.397326 GCAGAGAAAACCAGATGATGTTTC 58.603 41.667 0.00 0.00 33.76 2.78
50 51 4.083110 CGCAGAGAAAACCAGATGATGTTT 60.083 41.667 0.00 0.00 36.29 2.83
51 52 3.438087 CGCAGAGAAAACCAGATGATGTT 59.562 43.478 0.00 0.00 0.00 2.71
52 53 3.005554 CGCAGAGAAAACCAGATGATGT 58.994 45.455 0.00 0.00 0.00 3.06
53 54 2.223203 GCGCAGAGAAAACCAGATGATG 60.223 50.000 0.30 0.00 0.00 3.07
54 55 2.012673 GCGCAGAGAAAACCAGATGAT 58.987 47.619 0.30 0.00 0.00 2.45
55 56 1.002430 AGCGCAGAGAAAACCAGATGA 59.998 47.619 11.47 0.00 0.00 2.92
56 57 1.446907 AGCGCAGAGAAAACCAGATG 58.553 50.000 11.47 0.00 0.00 2.90
57 58 2.191128 AAGCGCAGAGAAAACCAGAT 57.809 45.000 11.47 0.00 0.00 2.90
58 59 2.037251 AGTAAGCGCAGAGAAAACCAGA 59.963 45.455 11.47 0.00 0.00 3.86
59 60 2.417719 AGTAAGCGCAGAGAAAACCAG 58.582 47.619 11.47 0.00 0.00 4.00
60 61 2.543777 AGTAAGCGCAGAGAAAACCA 57.456 45.000 11.47 0.00 0.00 3.67
61 62 3.242446 GCATAGTAAGCGCAGAGAAAACC 60.242 47.826 11.47 0.00 0.00 3.27
62 63 3.929414 GCATAGTAAGCGCAGAGAAAAC 58.071 45.455 11.47 0.00 0.00 2.43
73 74 3.933332 AGAAGAAACACCGCATAGTAAGC 59.067 43.478 0.00 0.00 0.00 3.09
74 75 4.330074 CCAGAAGAAACACCGCATAGTAAG 59.670 45.833 0.00 0.00 0.00 2.34
75 76 4.250464 CCAGAAGAAACACCGCATAGTAA 58.750 43.478 0.00 0.00 0.00 2.24
76 77 3.369052 CCCAGAAGAAACACCGCATAGTA 60.369 47.826 0.00 0.00 0.00 1.82
77 78 2.615493 CCCAGAAGAAACACCGCATAGT 60.615 50.000 0.00 0.00 0.00 2.12
78 79 2.009774 CCCAGAAGAAACACCGCATAG 58.990 52.381 0.00 0.00 0.00 2.23
79 80 1.626321 TCCCAGAAGAAACACCGCATA 59.374 47.619 0.00 0.00 0.00 3.14
80 81 0.400213 TCCCAGAAGAAACACCGCAT 59.600 50.000 0.00 0.00 0.00 4.73
81 82 0.250295 CTCCCAGAAGAAACACCGCA 60.250 55.000 0.00 0.00 0.00 5.69
82 83 0.034896 TCTCCCAGAAGAAACACCGC 59.965 55.000 0.00 0.00 0.00 5.68
83 84 2.289694 ACATCTCCCAGAAGAAACACCG 60.290 50.000 0.00 0.00 0.00 4.94
84 85 3.077359 CACATCTCCCAGAAGAAACACC 58.923 50.000 0.00 0.00 0.00 4.16
85 86 3.077359 CCACATCTCCCAGAAGAAACAC 58.923 50.000 0.00 0.00 0.00 3.32
86 87 2.040278 CCCACATCTCCCAGAAGAAACA 59.960 50.000 0.00 0.00 0.00 2.83
87 88 2.619074 CCCCACATCTCCCAGAAGAAAC 60.619 54.545 0.00 0.00 0.00 2.78
88 89 1.635487 CCCCACATCTCCCAGAAGAAA 59.365 52.381 0.00 0.00 0.00 2.52
89 90 1.289160 CCCCACATCTCCCAGAAGAA 58.711 55.000 0.00 0.00 0.00 2.52
90 91 0.621571 CCCCCACATCTCCCAGAAGA 60.622 60.000 0.00 0.00 0.00 2.87
91 92 0.916358 ACCCCCACATCTCCCAGAAG 60.916 60.000 0.00 0.00 0.00 2.85
92 93 0.914417 GACCCCCACATCTCCCAGAA 60.914 60.000 0.00 0.00 0.00 3.02
93 94 1.306997 GACCCCCACATCTCCCAGA 60.307 63.158 0.00 0.00 0.00 3.86
94 95 0.916358 AAGACCCCCACATCTCCCAG 60.916 60.000 0.00 0.00 0.00 4.45
95 96 0.914417 GAAGACCCCCACATCTCCCA 60.914 60.000 0.00 0.00 0.00 4.37
96 97 0.914417 TGAAGACCCCCACATCTCCC 60.914 60.000 0.00 0.00 0.00 4.30
97 98 0.991920 TTGAAGACCCCCACATCTCC 59.008 55.000 0.00 0.00 0.00 3.71
98 99 2.040412 ACTTTGAAGACCCCCACATCTC 59.960 50.000 0.00 0.00 0.00 2.75
99 100 2.065799 ACTTTGAAGACCCCCACATCT 58.934 47.619 0.00 0.00 0.00 2.90
100 101 2.162681 CACTTTGAAGACCCCCACATC 58.837 52.381 0.00 0.00 0.00 3.06
101 102 1.823250 GCACTTTGAAGACCCCCACAT 60.823 52.381 0.00 0.00 0.00 3.21
102 103 0.467290 GCACTTTGAAGACCCCCACA 60.467 55.000 0.00 0.00 0.00 4.17
103 104 0.178990 AGCACTTTGAAGACCCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
104 105 0.555769 AAGCACTTTGAAGACCCCCA 59.444 50.000 0.00 0.00 0.00 4.96
105 106 2.579410 TAAGCACTTTGAAGACCCCC 57.421 50.000 0.00 0.00 0.00 5.40
106 107 2.164422 GCATAAGCACTTTGAAGACCCC 59.836 50.000 0.00 0.00 41.58 4.95
107 108 3.084786 AGCATAAGCACTTTGAAGACCC 58.915 45.455 0.00 0.00 45.49 4.46
108 109 4.379918 GGAAGCATAAGCACTTTGAAGACC 60.380 45.833 0.00 0.00 45.49 3.85
109 110 4.457257 AGGAAGCATAAGCACTTTGAAGAC 59.543 41.667 0.00 0.00 45.49 3.01
110 111 4.655963 AGGAAGCATAAGCACTTTGAAGA 58.344 39.130 0.00 0.00 45.49 2.87
111 112 4.456911 TGAGGAAGCATAAGCACTTTGAAG 59.543 41.667 0.00 0.00 45.49 3.02
112 113 4.397420 TGAGGAAGCATAAGCACTTTGAA 58.603 39.130 0.00 0.00 45.49 2.69
113 114 4.019792 TGAGGAAGCATAAGCACTTTGA 57.980 40.909 0.00 0.00 45.49 2.69
114 115 4.217118 ACTTGAGGAAGCATAAGCACTTTG 59.783 41.667 0.00 0.00 45.49 2.77
115 116 4.401925 ACTTGAGGAAGCATAAGCACTTT 58.598 39.130 0.00 0.00 45.49 2.66
116 117 4.006319 GACTTGAGGAAGCATAAGCACTT 58.994 43.478 0.00 0.00 45.49 3.16
117 118 3.604582 GACTTGAGGAAGCATAAGCACT 58.395 45.455 0.00 0.00 45.49 4.40
118 119 2.680339 GGACTTGAGGAAGCATAAGCAC 59.320 50.000 0.00 0.00 45.49 4.40
119 120 2.305635 TGGACTTGAGGAAGCATAAGCA 59.694 45.455 0.00 0.00 45.49 3.91
120 121 2.991250 TGGACTTGAGGAAGCATAAGC 58.009 47.619 0.00 0.00 42.56 3.09
121 122 4.133078 GGATGGACTTGAGGAAGCATAAG 58.867 47.826 0.00 0.00 31.68 1.73
122 123 3.523157 TGGATGGACTTGAGGAAGCATAA 59.477 43.478 0.00 0.00 31.68 1.90
123 124 3.114606 TGGATGGACTTGAGGAAGCATA 58.885 45.455 0.00 0.00 31.68 3.14
124 125 1.918262 TGGATGGACTTGAGGAAGCAT 59.082 47.619 0.00 0.00 31.68 3.79
125 126 1.361204 TGGATGGACTTGAGGAAGCA 58.639 50.000 0.00 0.00 31.68 3.91
126 127 2.570135 GATGGATGGACTTGAGGAAGC 58.430 52.381 0.00 0.00 31.68 3.86
127 128 2.507058 TGGATGGATGGACTTGAGGAAG 59.493 50.000 0.00 0.00 35.07 3.46
128 129 2.561187 TGGATGGATGGACTTGAGGAA 58.439 47.619 0.00 0.00 0.00 3.36
129 130 2.268796 TGGATGGATGGACTTGAGGA 57.731 50.000 0.00 0.00 0.00 3.71
130 131 2.224719 GGATGGATGGATGGACTTGAGG 60.225 54.545 0.00 0.00 0.00 3.86
131 132 2.440627 TGGATGGATGGATGGACTTGAG 59.559 50.000 0.00 0.00 0.00 3.02
132 133 2.173356 GTGGATGGATGGATGGACTTGA 59.827 50.000 0.00 0.00 0.00 3.02
133 134 2.174210 AGTGGATGGATGGATGGACTTG 59.826 50.000 0.00 0.00 0.00 3.16
134 135 2.174210 CAGTGGATGGATGGATGGACTT 59.826 50.000 0.00 0.00 0.00 3.01
135 136 1.773052 CAGTGGATGGATGGATGGACT 59.227 52.381 0.00 0.00 0.00 3.85
136 137 2.267174 CAGTGGATGGATGGATGGAC 57.733 55.000 0.00 0.00 0.00 4.02
147 148 4.330250 ACTCTTCATTTGACCAGTGGATG 58.670 43.478 18.40 9.27 0.00 3.51
148 149 4.288105 AGACTCTTCATTTGACCAGTGGAT 59.712 41.667 18.40 0.00 0.00 3.41
149 150 3.648067 AGACTCTTCATTTGACCAGTGGA 59.352 43.478 18.40 0.00 0.00 4.02
150 151 3.750130 CAGACTCTTCATTTGACCAGTGG 59.250 47.826 7.91 7.91 0.00 4.00
151 152 4.212847 CACAGACTCTTCATTTGACCAGTG 59.787 45.833 0.00 0.00 0.00 3.66
152 153 4.101585 TCACAGACTCTTCATTTGACCAGT 59.898 41.667 0.00 0.00 0.00 4.00
153 154 4.635223 TCACAGACTCTTCATTTGACCAG 58.365 43.478 0.00 0.00 0.00 4.00
154 155 4.344968 TCTCACAGACTCTTCATTTGACCA 59.655 41.667 0.00 0.00 0.00 4.02
155 156 4.887748 TCTCACAGACTCTTCATTTGACC 58.112 43.478 0.00 0.00 0.00 4.02
156 157 4.928615 CCTCTCACAGACTCTTCATTTGAC 59.071 45.833 0.00 0.00 0.00 3.18
157 158 4.835056 TCCTCTCACAGACTCTTCATTTGA 59.165 41.667 0.00 0.00 0.00 2.69
158 159 5.144692 TCCTCTCACAGACTCTTCATTTG 57.855 43.478 0.00 0.00 0.00 2.32
159 160 4.322650 GCTCCTCTCACAGACTCTTCATTT 60.323 45.833 0.00 0.00 0.00 2.32
160 161 3.195396 GCTCCTCTCACAGACTCTTCATT 59.805 47.826 0.00 0.00 0.00 2.57
161 162 2.760092 GCTCCTCTCACAGACTCTTCAT 59.240 50.000 0.00 0.00 0.00 2.57
162 163 2.166829 GCTCCTCTCACAGACTCTTCA 58.833 52.381 0.00 0.00 0.00 3.02
163 164 2.164219 CAGCTCCTCTCACAGACTCTTC 59.836 54.545 0.00 0.00 0.00 2.87
164 165 2.170166 CAGCTCCTCTCACAGACTCTT 58.830 52.381 0.00 0.00 0.00 2.85
165 166 1.838112 CAGCTCCTCTCACAGACTCT 58.162 55.000 0.00 0.00 0.00 3.24
166 167 0.173255 GCAGCTCCTCTCACAGACTC 59.827 60.000 0.00 0.00 0.00 3.36
167 168 1.257055 GGCAGCTCCTCTCACAGACT 61.257 60.000 0.00 0.00 0.00 3.24
168 169 1.217779 GGCAGCTCCTCTCACAGAC 59.782 63.158 0.00 0.00 0.00 3.51
169 170 1.986757 GGGCAGCTCCTCTCACAGA 60.987 63.158 0.00 0.00 34.39 3.41
170 171 2.583520 GGGCAGCTCCTCTCACAG 59.416 66.667 0.00 0.00 34.39 3.66
171 172 3.005539 GGGGCAGCTCCTCTCACA 61.006 66.667 3.04 0.00 34.39 3.58
172 173 3.791586 GGGGGCAGCTCCTCTCAC 61.792 72.222 12.38 0.00 34.93 3.51
186 187 1.535204 ATTTGCGCAACTTCTGGGGG 61.535 55.000 24.99 0.00 38.41 5.40
187 188 0.109132 GATTTGCGCAACTTCTGGGG 60.109 55.000 24.99 0.00 38.41 4.96
188 189 0.597568 TGATTTGCGCAACTTCTGGG 59.402 50.000 24.99 0.00 40.91 4.45
189 190 2.420628 TTGATTTGCGCAACTTCTGG 57.579 45.000 24.99 0.00 0.00 3.86
190 191 3.631144 TCTTTGATTTGCGCAACTTCTG 58.369 40.909 24.99 15.49 0.00 3.02
191 192 3.988379 TCTTTGATTTGCGCAACTTCT 57.012 38.095 24.99 7.92 0.00 2.85
192 193 5.580911 ATTTCTTTGATTTGCGCAACTTC 57.419 34.783 24.99 22.00 0.00 3.01
193 194 7.475771 TTTATTTCTTTGATTTGCGCAACTT 57.524 28.000 24.99 13.83 0.00 2.66
194 195 7.437862 TCTTTTATTTCTTTGATTTGCGCAACT 59.562 29.630 24.99 18.95 0.00 3.16
195 196 7.527183 GTCTTTTATTTCTTTGATTTGCGCAAC 59.473 33.333 24.99 13.41 0.00 4.17
196 197 7.563270 GTCTTTTATTTCTTTGATTTGCGCAA 58.437 30.769 21.02 21.02 0.00 4.85
197 198 6.129221 CGTCTTTTATTTCTTTGATTTGCGCA 60.129 34.615 5.66 5.66 0.00 6.09
198 199 6.226407 CGTCTTTTATTTCTTTGATTTGCGC 58.774 36.000 0.00 0.00 0.00 6.09
199 200 6.362283 ACCGTCTTTTATTTCTTTGATTTGCG 59.638 34.615 0.00 0.00 0.00 4.85
200 201 7.381139 TCACCGTCTTTTATTTCTTTGATTTGC 59.619 33.333 0.00 0.00 0.00 3.68
201 202 8.795786 TCACCGTCTTTTATTTCTTTGATTTG 57.204 30.769 0.00 0.00 0.00 2.32
204 205 9.449719 AGTATCACCGTCTTTTATTTCTTTGAT 57.550 29.630 0.00 0.00 0.00 2.57
205 206 8.842358 AGTATCACCGTCTTTTATTTCTTTGA 57.158 30.769 0.00 0.00 0.00 2.69
209 210 8.866956 CGTTTAGTATCACCGTCTTTTATTTCT 58.133 33.333 0.00 0.00 0.00 2.52
210 211 8.650714 ACGTTTAGTATCACCGTCTTTTATTTC 58.349 33.333 0.00 0.00 0.00 2.17
211 212 8.437742 CACGTTTAGTATCACCGTCTTTTATTT 58.562 33.333 0.00 0.00 0.00 1.40
212 213 7.599998 ACACGTTTAGTATCACCGTCTTTTATT 59.400 33.333 0.00 0.00 0.00 1.40
213 214 7.062605 CACACGTTTAGTATCACCGTCTTTTAT 59.937 37.037 0.00 0.00 0.00 1.40
214 215 6.363088 CACACGTTTAGTATCACCGTCTTTTA 59.637 38.462 0.00 0.00 0.00 1.52
215 216 5.176223 CACACGTTTAGTATCACCGTCTTTT 59.824 40.000 0.00 0.00 0.00 2.27
216 217 4.682860 CACACGTTTAGTATCACCGTCTTT 59.317 41.667 0.00 0.00 0.00 2.52
217 218 4.232221 CACACGTTTAGTATCACCGTCTT 58.768 43.478 0.00 0.00 0.00 3.01
218 219 3.254166 ACACACGTTTAGTATCACCGTCT 59.746 43.478 0.00 0.00 0.00 4.18
219 220 3.568538 ACACACGTTTAGTATCACCGTC 58.431 45.455 0.00 0.00 0.00 4.79
220 221 3.648339 ACACACGTTTAGTATCACCGT 57.352 42.857 0.00 0.00 0.00 4.83
221 222 3.365820 GGAACACACGTTTAGTATCACCG 59.634 47.826 0.00 0.00 34.75 4.94
222 223 4.309099 TGGAACACACGTTTAGTATCACC 58.691 43.478 0.00 0.00 34.75 4.02
223 224 5.224888 TCTGGAACACACGTTTAGTATCAC 58.775 41.667 0.00 0.00 34.75 3.06
224 225 5.456548 TCTGGAACACACGTTTAGTATCA 57.543 39.130 0.00 0.00 34.75 2.15
225 226 9.909644 ATATATCTGGAACACACGTTTAGTATC 57.090 33.333 0.00 0.00 34.75 2.24
228 229 9.745880 CTAATATATCTGGAACACACGTTTAGT 57.254 33.333 0.00 0.00 34.75 2.24
229 230 9.745880 ACTAATATATCTGGAACACACGTTTAG 57.254 33.333 0.00 0.00 34.75 1.85
231 232 9.745880 CTACTAATATATCTGGAACACACGTTT 57.254 33.333 0.00 0.00 34.75 3.60
232 233 7.866393 GCTACTAATATATCTGGAACACACGTT 59.134 37.037 0.00 0.00 38.33 3.99
233 234 7.013942 TGCTACTAATATATCTGGAACACACGT 59.986 37.037 0.00 0.00 0.00 4.49
234 235 7.326305 GTGCTACTAATATATCTGGAACACACG 59.674 40.741 0.00 0.00 0.00 4.49
235 236 8.361139 AGTGCTACTAATATATCTGGAACACAC 58.639 37.037 0.00 0.00 0.00 3.82
236 237 8.478775 AGTGCTACTAATATATCTGGAACACA 57.521 34.615 0.00 0.00 0.00 3.72
237 238 9.413048 GAAGTGCTACTAATATATCTGGAACAC 57.587 37.037 0.00 0.00 0.00 3.32
238 239 9.143155 TGAAGTGCTACTAATATATCTGGAACA 57.857 33.333 0.00 0.00 0.00 3.18
239 240 9.413048 GTGAAGTGCTACTAATATATCTGGAAC 57.587 37.037 0.00 0.00 0.00 3.62
240 241 8.585881 GGTGAAGTGCTACTAATATATCTGGAA 58.414 37.037 0.00 0.00 0.00 3.53
241 242 7.178628 GGGTGAAGTGCTACTAATATATCTGGA 59.821 40.741 0.00 0.00 0.00 3.86
242 243 7.324178 GGGTGAAGTGCTACTAATATATCTGG 58.676 42.308 0.00 0.00 0.00 3.86
243 244 7.324178 GGGGTGAAGTGCTACTAATATATCTG 58.676 42.308 0.00 0.00 0.00 2.90
244 245 6.440965 GGGGGTGAAGTGCTACTAATATATCT 59.559 42.308 0.00 0.00 0.00 1.98
245 246 6.440965 AGGGGGTGAAGTGCTACTAATATATC 59.559 42.308 0.00 0.00 0.00 1.63
246 247 6.331846 AGGGGGTGAAGTGCTACTAATATAT 58.668 40.000 0.00 0.00 0.00 0.86
247 248 5.723355 AGGGGGTGAAGTGCTACTAATATA 58.277 41.667 0.00 0.00 0.00 0.86
248 249 4.567857 AGGGGGTGAAGTGCTACTAATAT 58.432 43.478 0.00 0.00 0.00 1.28
249 250 4.003584 AGGGGGTGAAGTGCTACTAATA 57.996 45.455 0.00 0.00 0.00 0.98
250 251 2.846950 AGGGGGTGAAGTGCTACTAAT 58.153 47.619 0.00 0.00 0.00 1.73
251 252 2.337359 AGGGGGTGAAGTGCTACTAA 57.663 50.000 0.00 0.00 0.00 2.24
252 253 3.478175 TTAGGGGGTGAAGTGCTACTA 57.522 47.619 0.00 0.00 0.00 1.82
253 254 2.337359 TTAGGGGGTGAAGTGCTACT 57.663 50.000 0.00 0.00 0.00 2.57
254 255 2.772515 AGATTAGGGGGTGAAGTGCTAC 59.227 50.000 0.00 0.00 0.00 3.58
255 256 3.130734 AGATTAGGGGGTGAAGTGCTA 57.869 47.619 0.00 0.00 0.00 3.49
256 257 1.972588 AGATTAGGGGGTGAAGTGCT 58.027 50.000 0.00 0.00 0.00 4.40
257 258 2.755103 CAAAGATTAGGGGGTGAAGTGC 59.245 50.000 0.00 0.00 0.00 4.40
258 259 4.034285 ACAAAGATTAGGGGGTGAAGTG 57.966 45.455 0.00 0.00 0.00 3.16
259 260 4.407365 CAACAAAGATTAGGGGGTGAAGT 58.593 43.478 0.00 0.00 0.00 3.01
260 261 3.763897 CCAACAAAGATTAGGGGGTGAAG 59.236 47.826 0.00 0.00 0.00 3.02
261 262 3.399644 TCCAACAAAGATTAGGGGGTGAA 59.600 43.478 0.00 0.00 0.00 3.18
262 263 2.990284 TCCAACAAAGATTAGGGGGTGA 59.010 45.455 0.00 0.00 0.00 4.02
263 264 3.356290 CTCCAACAAAGATTAGGGGGTG 58.644 50.000 0.00 0.00 0.00 4.61
264 265 2.311841 CCTCCAACAAAGATTAGGGGGT 59.688 50.000 0.00 0.00 35.18 4.95
265 266 2.950418 GCCTCCAACAAAGATTAGGGGG 60.950 54.545 0.00 0.00 43.16 5.40
266 267 2.291540 TGCCTCCAACAAAGATTAGGGG 60.292 50.000 0.00 0.00 0.00 4.79
267 268 3.085952 TGCCTCCAACAAAGATTAGGG 57.914 47.619 0.00 0.00 0.00 3.53
268 269 3.181483 GCATGCCTCCAACAAAGATTAGG 60.181 47.826 6.36 0.00 0.00 2.69
269 270 3.444742 TGCATGCCTCCAACAAAGATTAG 59.555 43.478 16.68 0.00 0.00 1.73
270 271 3.429492 TGCATGCCTCCAACAAAGATTA 58.571 40.909 16.68 0.00 0.00 1.75
271 272 2.232941 CTGCATGCCTCCAACAAAGATT 59.767 45.455 16.68 0.00 0.00 2.40
272 273 1.822990 CTGCATGCCTCCAACAAAGAT 59.177 47.619 16.68 0.00 0.00 2.40
273 274 1.250328 CTGCATGCCTCCAACAAAGA 58.750 50.000 16.68 0.00 0.00 2.52
274 275 0.389426 GCTGCATGCCTCCAACAAAG 60.389 55.000 16.68 3.20 35.15 2.77
275 276 1.114119 TGCTGCATGCCTCCAACAAA 61.114 50.000 16.68 0.00 42.00 2.83
276 277 1.529152 CTGCTGCATGCCTCCAACAA 61.529 55.000 16.68 0.00 42.00 2.83
277 278 1.974875 CTGCTGCATGCCTCCAACA 60.975 57.895 16.68 3.36 42.00 3.33
278 279 0.677731 TACTGCTGCATGCCTCCAAC 60.678 55.000 16.68 0.00 42.00 3.77
279 280 0.038021 TTACTGCTGCATGCCTCCAA 59.962 50.000 16.68 0.00 42.00 3.53
280 281 0.038021 TTTACTGCTGCATGCCTCCA 59.962 50.000 16.68 8.48 42.00 3.86
281 282 0.737219 CTTTACTGCTGCATGCCTCC 59.263 55.000 16.68 3.71 42.00 4.30
282 283 0.737219 CCTTTACTGCTGCATGCCTC 59.263 55.000 16.68 7.31 42.00 4.70
283 284 0.682209 CCCTTTACTGCTGCATGCCT 60.682 55.000 16.68 0.00 42.00 4.75
284 285 0.680921 TCCCTTTACTGCTGCATGCC 60.681 55.000 16.68 0.28 42.00 4.40
285 286 1.176527 TTCCCTTTACTGCTGCATGC 58.823 50.000 11.82 11.82 43.25 4.06
286 287 3.940209 TTTTCCCTTTACTGCTGCATG 57.060 42.857 1.31 0.00 0.00 4.06
287 288 4.088634 TGATTTTCCCTTTACTGCTGCAT 58.911 39.130 1.31 0.00 0.00 3.96
288 289 3.495331 TGATTTTCCCTTTACTGCTGCA 58.505 40.909 0.88 0.88 0.00 4.41
289 290 3.119352 CCTGATTTTCCCTTTACTGCTGC 60.119 47.826 0.00 0.00 0.00 5.25
290 291 4.335416 TCCTGATTTTCCCTTTACTGCTG 58.665 43.478 0.00 0.00 0.00 4.41
291 292 4.657814 TCCTGATTTTCCCTTTACTGCT 57.342 40.909 0.00 0.00 0.00 4.24
292 293 5.722021 TTTCCTGATTTTCCCTTTACTGC 57.278 39.130 0.00 0.00 0.00 4.40
320 321 8.470805 TCTTTCTCTTGTCTACTTCATGGATAC 58.529 37.037 0.00 0.00 0.00 2.24
321 322 8.595362 TCTTTCTCTTGTCTACTTCATGGATA 57.405 34.615 0.00 0.00 0.00 2.59
322 323 7.487822 TCTTTCTCTTGTCTACTTCATGGAT 57.512 36.000 0.00 0.00 0.00 3.41
323 324 6.918067 TCTTTCTCTTGTCTACTTCATGGA 57.082 37.500 0.00 0.00 0.00 3.41
324 325 7.969536 TTTCTTTCTCTTGTCTACTTCATGG 57.030 36.000 0.00 0.00 0.00 3.66
398 399 9.528847 GCAGTTTTGTGTTTTTCTTCTTTTTAG 57.471 29.630 0.00 0.00 0.00 1.85
399 400 9.046296 TGCAGTTTTGTGTTTTTCTTCTTTTTA 57.954 25.926 0.00 0.00 0.00 1.52
400 401 7.855409 GTGCAGTTTTGTGTTTTTCTTCTTTTT 59.145 29.630 0.00 0.00 0.00 1.94
401 402 7.011857 TGTGCAGTTTTGTGTTTTTCTTCTTTT 59.988 29.630 0.00 0.00 0.00 2.27
402 403 6.481644 TGTGCAGTTTTGTGTTTTTCTTCTTT 59.518 30.769 0.00 0.00 0.00 2.52
403 404 5.988561 TGTGCAGTTTTGTGTTTTTCTTCTT 59.011 32.000 0.00 0.00 0.00 2.52
404 405 5.537188 TGTGCAGTTTTGTGTTTTTCTTCT 58.463 33.333 0.00 0.00 0.00 2.85
405 406 5.837586 TGTGCAGTTTTGTGTTTTTCTTC 57.162 34.783 0.00 0.00 0.00 2.87
406 407 5.757808 ACTTGTGCAGTTTTGTGTTTTTCTT 59.242 32.000 0.00 0.00 27.32 2.52
407 408 5.296748 ACTTGTGCAGTTTTGTGTTTTTCT 58.703 33.333 0.00 0.00 27.32 2.52
408 409 5.590104 ACTTGTGCAGTTTTGTGTTTTTC 57.410 34.783 0.00 0.00 27.32 2.29
409 410 5.757808 AGAACTTGTGCAGTTTTGTGTTTTT 59.242 32.000 0.00 0.00 46.53 1.94
410 411 5.296748 AGAACTTGTGCAGTTTTGTGTTTT 58.703 33.333 0.00 0.00 46.53 2.43
411 412 4.881920 AGAACTTGTGCAGTTTTGTGTTT 58.118 34.783 0.00 0.00 46.53 2.83
412 413 4.519540 AGAACTTGTGCAGTTTTGTGTT 57.480 36.364 0.00 0.00 46.53 3.32
413 414 4.438744 GCTAGAACTTGTGCAGTTTTGTGT 60.439 41.667 0.00 0.00 46.53 3.72
414 415 4.037690 GCTAGAACTTGTGCAGTTTTGTG 58.962 43.478 0.00 0.00 46.53 3.33
415 416 3.066760 GGCTAGAACTTGTGCAGTTTTGT 59.933 43.478 0.00 0.00 46.53 2.83
416 417 3.632189 GGCTAGAACTTGTGCAGTTTTG 58.368 45.455 0.00 0.00 46.53 2.44
417 418 2.290641 CGGCTAGAACTTGTGCAGTTTT 59.709 45.455 0.00 0.00 46.53 2.43
418 419 1.873591 CGGCTAGAACTTGTGCAGTTT 59.126 47.619 0.00 0.00 46.53 2.66
420 421 0.951040 GCGGCTAGAACTTGTGCAGT 60.951 55.000 0.00 0.00 37.30 4.40
421 422 0.671781 AGCGGCTAGAACTTGTGCAG 60.672 55.000 0.00 0.00 0.00 4.41
422 423 0.670546 GAGCGGCTAGAACTTGTGCA 60.671 55.000 0.60 0.00 0.00 4.57
423 424 0.390472 AGAGCGGCTAGAACTTGTGC 60.390 55.000 0.60 0.00 0.00 4.57
424 425 1.067565 TCAGAGCGGCTAGAACTTGTG 60.068 52.381 0.60 0.00 0.00 3.33
425 426 1.257743 TCAGAGCGGCTAGAACTTGT 58.742 50.000 0.60 0.00 0.00 3.16
426 427 2.370281 TTCAGAGCGGCTAGAACTTG 57.630 50.000 0.60 0.00 0.00 3.16
427 428 4.737855 TTATTCAGAGCGGCTAGAACTT 57.262 40.909 16.54 7.45 0.00 2.66
428 429 4.946478 ATTATTCAGAGCGGCTAGAACT 57.054 40.909 16.54 1.71 0.00 3.01
429 430 8.758633 TTATTATTATTCAGAGCGGCTAGAAC 57.241 34.615 16.54 0.00 0.00 3.01
490 491 8.535335 TGGGTTATGCAATTAATTATGTGTTGT 58.465 29.630 0.00 0.00 0.00 3.32
491 492 8.939201 TGGGTTATGCAATTAATTATGTGTTG 57.061 30.769 0.00 0.00 0.00 3.33
492 493 8.976353 TCTGGGTTATGCAATTAATTATGTGTT 58.024 29.630 0.00 0.00 0.00 3.32
493 494 8.413229 GTCTGGGTTATGCAATTAATTATGTGT 58.587 33.333 0.00 0.00 0.00 3.72
494 495 7.591057 CGTCTGGGTTATGCAATTAATTATGTG 59.409 37.037 0.00 0.00 0.00 3.21
495 496 7.284489 ACGTCTGGGTTATGCAATTAATTATGT 59.716 33.333 0.00 0.00 0.00 2.29
496 497 7.648142 ACGTCTGGGTTATGCAATTAATTATG 58.352 34.615 0.00 0.00 0.00 1.90
497 498 7.817418 ACGTCTGGGTTATGCAATTAATTAT 57.183 32.000 0.00 0.00 0.00 1.28
498 499 8.614346 GTTACGTCTGGGTTATGCAATTAATTA 58.386 33.333 0.00 0.00 0.00 1.40
499 500 7.338449 AGTTACGTCTGGGTTATGCAATTAATT 59.662 33.333 0.00 0.00 0.00 1.40
500 501 6.826741 AGTTACGTCTGGGTTATGCAATTAAT 59.173 34.615 0.00 0.00 0.00 1.40
501 502 6.174760 AGTTACGTCTGGGTTATGCAATTAA 58.825 36.000 0.00 0.00 0.00 1.40
502 503 5.736813 AGTTACGTCTGGGTTATGCAATTA 58.263 37.500 0.00 0.00 0.00 1.40
503 504 4.585879 AGTTACGTCTGGGTTATGCAATT 58.414 39.130 0.00 0.00 0.00 2.32
504 505 4.216411 AGTTACGTCTGGGTTATGCAAT 57.784 40.909 0.00 0.00 0.00 3.56
505 506 3.688694 AGTTACGTCTGGGTTATGCAA 57.311 42.857 0.00 0.00 0.00 4.08
506 507 3.427909 CGTAGTTACGTCTGGGTTATGCA 60.428 47.826 0.00 0.00 44.13 3.96
507 508 3.111098 CGTAGTTACGTCTGGGTTATGC 58.889 50.000 0.00 0.00 44.13 3.14
524 525 7.329471 TGTCTGAAAATGAAGAAGATGACGTAG 59.671 37.037 0.00 0.00 0.00 3.51
525 526 7.151976 TGTCTGAAAATGAAGAAGATGACGTA 58.848 34.615 0.00 0.00 0.00 3.57
526 527 5.991606 TGTCTGAAAATGAAGAAGATGACGT 59.008 36.000 0.00 0.00 0.00 4.34
527 528 6.471976 TGTCTGAAAATGAAGAAGATGACG 57.528 37.500 0.00 0.00 0.00 4.35
528 529 7.967303 GGATTGTCTGAAAATGAAGAAGATGAC 59.033 37.037 0.00 0.00 0.00 3.06
529 530 7.666804 TGGATTGTCTGAAAATGAAGAAGATGA 59.333 33.333 0.00 0.00 0.00 2.92
530 531 7.823665 TGGATTGTCTGAAAATGAAGAAGATG 58.176 34.615 0.00 0.00 0.00 2.90
531 532 8.467598 CATGGATTGTCTGAAAATGAAGAAGAT 58.532 33.333 0.00 0.00 0.00 2.40
532 533 7.094075 CCATGGATTGTCTGAAAATGAAGAAGA 60.094 37.037 5.56 0.00 0.00 2.87
533 534 7.033791 CCATGGATTGTCTGAAAATGAAGAAG 58.966 38.462 5.56 0.00 0.00 2.85
534 535 6.572898 GCCATGGATTGTCTGAAAATGAAGAA 60.573 38.462 18.40 0.00 0.00 2.52
535 536 5.105635 GCCATGGATTGTCTGAAAATGAAGA 60.106 40.000 18.40 0.00 0.00 2.87
536 537 5.107133 GCCATGGATTGTCTGAAAATGAAG 58.893 41.667 18.40 0.00 0.00 3.02
537 538 4.081531 GGCCATGGATTGTCTGAAAATGAA 60.082 41.667 18.40 0.00 0.00 2.57
538 539 3.448301 GGCCATGGATTGTCTGAAAATGA 59.552 43.478 18.40 0.00 0.00 2.57
539 540 3.196039 TGGCCATGGATTGTCTGAAAATG 59.804 43.478 18.40 0.00 0.00 2.32
540 541 3.196254 GTGGCCATGGATTGTCTGAAAAT 59.804 43.478 18.40 0.00 0.00 1.82
541 542 2.562298 GTGGCCATGGATTGTCTGAAAA 59.438 45.455 18.40 0.00 0.00 2.29
542 543 2.170166 GTGGCCATGGATTGTCTGAAA 58.830 47.619 18.40 0.00 0.00 2.69
543 544 1.838112 GTGGCCATGGATTGTCTGAA 58.162 50.000 18.40 0.00 0.00 3.02
544 545 0.392863 CGTGGCCATGGATTGTCTGA 60.393 55.000 18.40 0.00 0.00 3.27
545 546 0.392863 TCGTGGCCATGGATTGTCTG 60.393 55.000 24.78 0.00 0.00 3.51
546 547 0.392998 GTCGTGGCCATGGATTGTCT 60.393 55.000 24.78 0.00 0.00 3.41
547 548 0.676466 TGTCGTGGCCATGGATTGTC 60.676 55.000 24.78 6.63 0.00 3.18
548 549 0.677731 CTGTCGTGGCCATGGATTGT 60.678 55.000 24.78 0.00 0.00 2.71
549 550 1.378882 CCTGTCGTGGCCATGGATTG 61.379 60.000 24.78 12.12 0.00 2.67
550 551 1.077501 CCTGTCGTGGCCATGGATT 60.078 57.895 24.78 0.00 0.00 3.01
551 552 1.976132 CTCCTGTCGTGGCCATGGAT 61.976 60.000 24.78 0.00 0.00 3.41
552 553 2.606213 TCCTGTCGTGGCCATGGA 60.606 61.111 24.78 14.94 0.00 3.41
553 554 1.976132 ATCTCCTGTCGTGGCCATGG 61.976 60.000 24.78 7.63 0.00 3.66
554 555 0.531532 GATCTCCTGTCGTGGCCATG 60.532 60.000 19.62 19.62 0.00 3.66
555 556 0.977627 TGATCTCCTGTCGTGGCCAT 60.978 55.000 9.72 0.00 0.00 4.40
556 557 1.609210 TGATCTCCTGTCGTGGCCA 60.609 57.895 0.00 0.00 0.00 5.36
557 558 1.153549 GTGATCTCCTGTCGTGGCC 60.154 63.158 0.00 0.00 0.00 5.36
558 559 0.247736 AAGTGATCTCCTGTCGTGGC 59.752 55.000 0.00 0.00 0.00 5.01
559 560 4.261656 GGTATAAGTGATCTCCTGTCGTGG 60.262 50.000 0.00 0.00 0.00 4.94
560 561 4.261656 GGGTATAAGTGATCTCCTGTCGTG 60.262 50.000 0.00 0.00 0.00 4.35
561 562 3.890147 GGGTATAAGTGATCTCCTGTCGT 59.110 47.826 0.00 0.00 0.00 4.34
562 563 3.256136 GGGGTATAAGTGATCTCCTGTCG 59.744 52.174 0.00 0.00 0.00 4.35
563 564 3.579151 GGGGGTATAAGTGATCTCCTGTC 59.421 52.174 0.00 0.00 0.00 3.51
564 565 3.210074 AGGGGGTATAAGTGATCTCCTGT 59.790 47.826 0.00 0.00 0.00 4.00
565 566 3.835395 GAGGGGGTATAAGTGATCTCCTG 59.165 52.174 0.00 0.00 0.00 3.86
566 567 3.735442 AGAGGGGGTATAAGTGATCTCCT 59.265 47.826 0.00 0.00 0.00 3.69
567 568 3.835395 CAGAGGGGGTATAAGTGATCTCC 59.165 52.174 0.00 0.00 0.00 3.71
568 569 4.484912 ACAGAGGGGGTATAAGTGATCTC 58.515 47.826 0.00 0.00 0.00 2.75
569 570 4.561254 ACAGAGGGGGTATAAGTGATCT 57.439 45.455 0.00 0.00 0.00 2.75
570 571 5.367060 AGAAACAGAGGGGGTATAAGTGATC 59.633 44.000 0.00 0.00 0.00 2.92
571 572 5.289510 AGAAACAGAGGGGGTATAAGTGAT 58.710 41.667 0.00 0.00 0.00 3.06
572 573 4.695606 AGAAACAGAGGGGGTATAAGTGA 58.304 43.478 0.00 0.00 0.00 3.41
573 574 5.437191 AAGAAACAGAGGGGGTATAAGTG 57.563 43.478 0.00 0.00 0.00 3.16
574 575 6.464530 AAAAGAAACAGAGGGGGTATAAGT 57.535 37.500 0.00 0.00 0.00 2.24
575 576 8.107729 AGTAAAAAGAAACAGAGGGGGTATAAG 58.892 37.037 0.00 0.00 0.00 1.73
576 577 7.992295 AGTAAAAAGAAACAGAGGGGGTATAA 58.008 34.615 0.00 0.00 0.00 0.98
577 578 7.578458 AGTAAAAAGAAACAGAGGGGGTATA 57.422 36.000 0.00 0.00 0.00 1.47
578 579 6.464530 AGTAAAAAGAAACAGAGGGGGTAT 57.535 37.500 0.00 0.00 0.00 2.73
579 580 5.511888 CGAGTAAAAAGAAACAGAGGGGGTA 60.512 44.000 0.00 0.00 0.00 3.69
580 581 4.726583 GAGTAAAAAGAAACAGAGGGGGT 58.273 43.478 0.00 0.00 0.00 4.95
581 582 3.751698 CGAGTAAAAAGAAACAGAGGGGG 59.248 47.826 0.00 0.00 0.00 5.40
582 583 3.751698 CCGAGTAAAAAGAAACAGAGGGG 59.248 47.826 0.00 0.00 0.00 4.79
583 584 3.188667 GCCGAGTAAAAAGAAACAGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
584 585 3.813166 TGCCGAGTAAAAAGAAACAGAGG 59.187 43.478 0.00 0.00 0.00 3.69
585 586 5.613358 ATGCCGAGTAAAAAGAAACAGAG 57.387 39.130 0.00 0.00 0.00 3.35
586 587 6.228258 ACTATGCCGAGTAAAAAGAAACAGA 58.772 36.000 0.00 0.00 0.00 3.41
587 588 6.481954 ACTATGCCGAGTAAAAAGAAACAG 57.518 37.500 0.00 0.00 0.00 3.16
588 589 8.556213 AATACTATGCCGAGTAAAAAGAAACA 57.444 30.769 0.00 0.00 35.58 2.83
590 591 9.321562 CCTAATACTATGCCGAGTAAAAAGAAA 57.678 33.333 0.00 0.00 35.58 2.52
591 592 8.480501 ACCTAATACTATGCCGAGTAAAAAGAA 58.519 33.333 0.00 0.00 35.58 2.52
592 593 8.015185 ACCTAATACTATGCCGAGTAAAAAGA 57.985 34.615 0.00 0.00 35.58 2.52
593 594 8.658499 AACCTAATACTATGCCGAGTAAAAAG 57.342 34.615 0.00 0.00 35.58 2.27
644 645 6.207417 CACACACTCCTCATTCCTGTATTTTT 59.793 38.462 0.00 0.00 0.00 1.94
645 646 5.707298 CACACACTCCTCATTCCTGTATTTT 59.293 40.000 0.00 0.00 0.00 1.82
646 647 5.013079 TCACACACTCCTCATTCCTGTATTT 59.987 40.000 0.00 0.00 0.00 1.40
647 648 4.532126 TCACACACTCCTCATTCCTGTATT 59.468 41.667 0.00 0.00 0.00 1.89
648 649 4.096681 TCACACACTCCTCATTCCTGTAT 58.903 43.478 0.00 0.00 0.00 2.29
649 650 3.506398 TCACACACTCCTCATTCCTGTA 58.494 45.455 0.00 0.00 0.00 2.74
650 651 2.301296 CTCACACACTCCTCATTCCTGT 59.699 50.000 0.00 0.00 0.00 4.00
651 652 2.564504 TCTCACACACTCCTCATTCCTG 59.435 50.000 0.00 0.00 0.00 3.86
652 653 2.830923 CTCTCACACACTCCTCATTCCT 59.169 50.000 0.00 0.00 0.00 3.36
653 654 2.093764 CCTCTCACACACTCCTCATTCC 60.094 54.545 0.00 0.00 0.00 3.01
654 655 2.828520 TCCTCTCACACACTCCTCATTC 59.171 50.000 0.00 0.00 0.00 2.67
655 656 2.830923 CTCCTCTCACACACTCCTCATT 59.169 50.000 0.00 0.00 0.00 2.57
656 657 2.225242 ACTCCTCTCACACACTCCTCAT 60.225 50.000 0.00 0.00 0.00 2.90
657 658 1.145945 ACTCCTCTCACACACTCCTCA 59.854 52.381 0.00 0.00 0.00 3.86
658 659 1.917872 ACTCCTCTCACACACTCCTC 58.082 55.000 0.00 0.00 0.00 3.71
659 660 3.527507 TTACTCCTCTCACACACTCCT 57.472 47.619 0.00 0.00 0.00 3.69
660 661 6.322712 AGAATATTACTCCTCTCACACACTCC 59.677 42.308 0.00 0.00 0.00 3.85
661 662 7.284489 AGAGAATATTACTCCTCTCACACACTC 59.716 40.741 9.79 0.00 37.39 3.51
662 663 7.122715 AGAGAATATTACTCCTCTCACACACT 58.877 38.462 9.79 0.00 37.39 3.55
663 664 7.341445 AGAGAATATTACTCCTCTCACACAC 57.659 40.000 9.79 0.00 37.39 3.82
664 665 7.575414 GAGAGAATATTACTCCTCTCACACA 57.425 40.000 19.60 0.00 46.54 3.72
670 671 9.807921 CCTTCTAAGAGAGAATATTACTCCTCT 57.192 37.037 14.55 10.10 43.39 3.69
671 672 9.582648 ACCTTCTAAGAGAGAATATTACTCCTC 57.417 37.037 14.55 6.26 43.39 3.71
672 673 9.362151 CACCTTCTAAGAGAGAATATTACTCCT 57.638 37.037 14.55 7.90 43.39 3.69
673 674 9.357161 TCACCTTCTAAGAGAGAATATTACTCC 57.643 37.037 14.55 6.79 43.39 3.85
744 764 6.183360 GGTCCCTCTTGATTACCTTCTAAGAG 60.183 46.154 0.00 0.00 42.34 2.85
759 779 6.657875 AGAGATTTTAAGATGGTCCCTCTTG 58.342 40.000 17.19 0.00 34.81 3.02
762 782 6.493189 AGAGAGATTTTAAGATGGTCCCTC 57.507 41.667 0.00 0.00 0.00 4.30
786 806 5.181009 CACACTCCTCATTTGAGCAGAATA 58.819 41.667 5.53 0.00 40.75 1.75
814 834 3.954904 GGACAGCTTATACTCCTCTCACA 59.045 47.826 0.00 0.00 0.00 3.58
815 835 3.319689 GGGACAGCTTATACTCCTCTCAC 59.680 52.174 0.00 0.00 0.00 3.51
849 869 2.233431 GACCATTTAAAGCCCACATGCA 59.767 45.455 0.00 0.00 0.00 3.96
978 1013 2.639286 CAAACAGGTGAGTGCCGC 59.361 61.111 0.00 0.00 0.00 6.53
1035 1070 3.053395 CAGGGAATGAAGGAATGAAGGGA 60.053 47.826 0.00 0.00 0.00 4.20
1055 1090 1.227764 CCCATCGCCATGTCTCCAG 60.228 63.158 0.00 0.00 0.00 3.86
1076 1111 2.677524 GCACCATGAGCTTGGGCA 60.678 61.111 9.27 0.00 41.35 5.36
1177 1221 1.244019 GCCGAGGAAGTGCCATGTTT 61.244 55.000 0.00 0.00 40.02 2.83
1202 1246 3.409026 TCTGCTCAGGAAAAGAAGACC 57.591 47.619 0.00 0.00 0.00 3.85
1204 1248 4.630644 ACATCTGCTCAGGAAAAGAAGA 57.369 40.909 0.00 0.00 32.88 2.87
1205 1249 6.677431 GCATAACATCTGCTCAGGAAAAGAAG 60.677 42.308 0.00 0.00 36.68 2.85
1206 1250 5.124457 GCATAACATCTGCTCAGGAAAAGAA 59.876 40.000 0.00 0.00 36.68 2.52
1207 1251 4.637534 GCATAACATCTGCTCAGGAAAAGA 59.362 41.667 0.00 0.00 36.68 2.52
1208 1252 4.639310 AGCATAACATCTGCTCAGGAAAAG 59.361 41.667 0.00 0.00 46.79 2.27
1209 1253 4.397103 CAGCATAACATCTGCTCAGGAAAA 59.603 41.667 0.00 0.00 46.79 2.29
1210 1254 3.943381 CAGCATAACATCTGCTCAGGAAA 59.057 43.478 0.00 0.00 46.79 3.13
1235 1279 5.088730 CAATGAATTGGGGTATGGATGGAT 58.911 41.667 0.00 0.00 34.22 3.41
1237 1281 4.039488 CACAATGAATTGGGGTATGGATGG 59.961 45.833 7.87 0.00 41.96 3.51
1238 1282 4.501915 GCACAATGAATTGGGGTATGGATG 60.502 45.833 7.37 0.00 41.42 3.51
1251 1295 5.993441 CCCTTTTCTTCTTTGCACAATGAAT 59.007 36.000 10.90 0.00 35.06 2.57
1273 1321 5.533903 ACAGCATAACATCATCAGATTTCCC 59.466 40.000 0.00 0.00 30.20 3.97
1508 1564 0.586802 GGACAGACGAAACTTGTGGC 59.413 55.000 0.00 0.00 0.00 5.01
1535 1591 1.337823 CGAACCGGGAGACAGTTGAAT 60.338 52.381 6.32 0.00 0.00 2.57
1725 1785 5.773575 TGCGCTTAAAATTGTTGGTTATGA 58.226 33.333 9.73 0.00 0.00 2.15
1727 1787 6.451393 TCTTGCGCTTAAAATTGTTGGTTAT 58.549 32.000 9.73 0.00 0.00 1.89
1748 1808 7.769044 AGATTGTTGTATACGCTGGTAATTCTT 59.231 33.333 0.00 0.00 31.15 2.52
1755 1815 4.159693 TCAGAGATTGTTGTATACGCTGGT 59.840 41.667 0.00 0.00 0.00 4.00
1763 1823 6.533730 TGTTGGAGTTCAGAGATTGTTGTAT 58.466 36.000 0.00 0.00 0.00 2.29
1850 1910 7.653647 ACCGATCTAAACAAAAACTTTGCATA 58.346 30.769 0.00 0.00 0.00 3.14
2062 2122 2.124983 GAAGCCCTGCGCAGATGA 60.125 61.111 38.06 0.44 41.38 2.92
2339 2399 6.349243 TGCAGGAATGATTGAATCAAAACT 57.651 33.333 12.36 7.40 43.50 2.66
2370 2430 3.489738 GCCATAGCATCGAATTGCAAGTT 60.490 43.478 13.17 0.00 45.23 2.66
2449 2509 4.394712 CGGGAGTGGAGGTGGTGC 62.395 72.222 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.