Multiple sequence alignment - TraesCS5B01G050800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G050800 chr5B 100.000 2495 0 0 1 2495 55509970 55507476 0.000000e+00 4608.0
1 TraesCS5B01G050800 chr5B 96.181 288 8 3 209 495 55527735 55527450 3.760000e-128 468.0
2 TraesCS5B01G050800 chr5B 87.963 216 20 6 21 236 55528191 55527982 1.480000e-62 250.0
3 TraesCS5B01G050800 chr5D 92.759 1533 85 10 974 2495 52362287 52360770 0.000000e+00 2193.0
4 TraesCS5B01G050800 chr5D 89.891 732 47 14 289 999 52363019 52362294 0.000000e+00 917.0
5 TraesCS5B01G050800 chr5A 89.573 1266 80 27 450 1693 41462329 41461094 0.000000e+00 1559.0
6 TraesCS5B01G050800 chr5A 92.466 438 23 5 1691 2125 41459335 41458905 3.530000e-173 617.0
7 TraesCS5B01G050800 chr5A 88.485 330 22 6 2111 2428 41458892 41458567 3.890000e-103 385.0
8 TraesCS5B01G050800 chr5A 94.378 249 12 2 209 456 41462773 41462526 5.040000e-102 381.0
9 TraesCS5B01G050800 chr6D 100.000 28 0 0 169 196 291724337 291724310 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G050800 chr5B 55507476 55509970 2494 True 4608.0 4608 100.0000 1 2495 1 chr5B.!!$R1 2494
1 TraesCS5B01G050800 chr5B 55527450 55528191 741 True 359.0 468 92.0720 21 495 2 chr5B.!!$R2 474
2 TraesCS5B01G050800 chr5D 52360770 52363019 2249 True 1555.0 2193 91.3250 289 2495 2 chr5D.!!$R1 2206
3 TraesCS5B01G050800 chr5A 41458567 41462773 4206 True 735.5 1559 91.2255 209 2428 4 chr5A.!!$R1 2219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1488 0.248054 GTTGAGCGAGCGAGAGAGAG 60.248 60.0 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 4566 1.080366 GTGTATCGCACCACGGTCA 60.08 57.895 0.0 0.0 42.1 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 4.714308 ACAAGGTTCATGGGTTTGAGAAAA 59.286 37.500 0.00 0.00 0.00 2.29
257 531 0.403271 AGGCTTGCCAAGACAGTCAT 59.597 50.000 13.85 0.00 39.74 3.06
318 592 2.455032 TGTGGCGTCGAACAAATTTTG 58.545 42.857 7.59 7.59 0.00 2.44
503 989 2.914838 GGAAATGGATCGCGTTGTTTTC 59.085 45.455 5.77 10.32 0.00 2.29
504 990 3.365969 GGAAATGGATCGCGTTGTTTTCT 60.366 43.478 5.77 0.00 0.00 2.52
505 991 3.915437 AATGGATCGCGTTGTTTTCTT 57.085 38.095 5.77 0.00 0.00 2.52
513 1000 5.721876 TCGCGTTGTTTTCTTTCTCTTTA 57.278 34.783 5.77 0.00 0.00 1.85
517 1004 6.563381 CGCGTTGTTTTCTTTCTCTTTAGCTA 60.563 38.462 0.00 0.00 0.00 3.32
545 1032 7.097834 CACACATCACATGCATCTATCTATCT 58.902 38.462 0.00 0.00 0.00 1.98
549 1036 9.423964 ACATCACATGCATCTATCTATCTATCT 57.576 33.333 0.00 0.00 0.00 1.98
573 1060 8.267183 TCTATATGTGTGTCATTGTTCAGGATT 58.733 33.333 0.00 0.00 37.91 3.01
584 1071 8.831550 GTCATTGTTCAGGATTAGAGGAATAAC 58.168 37.037 0.00 0.00 0.00 1.89
591 1078 8.112016 TCAGGATTAGAGGAATAACGTCTATG 57.888 38.462 0.00 0.00 42.80 2.23
623 1112 1.826487 GGGTGCAAAGTCCAACGGT 60.826 57.895 0.00 0.00 0.00 4.83
638 1127 2.975799 GGTCCGGCTCAAAACGCA 60.976 61.111 0.00 0.00 0.00 5.24
642 1131 2.542907 CCGGCTCAAAACGCACACT 61.543 57.895 0.00 0.00 0.00 3.55
652 1141 1.229428 AACGCACACTGAGAACATGG 58.771 50.000 0.00 0.00 0.00 3.66
681 1170 2.419851 GCACAAGAGCCAGAAGATAGCT 60.420 50.000 0.00 0.00 40.24 3.32
695 1184 2.959030 AGATAGCTGAGCATCGTAACCA 59.041 45.455 7.39 0.00 38.61 3.67
696 1185 3.576118 AGATAGCTGAGCATCGTAACCAT 59.424 43.478 7.39 0.00 38.61 3.55
770 1259 3.244700 CCCACCACATCTTCTTTCAGAGT 60.245 47.826 0.00 0.00 0.00 3.24
795 1284 6.433716 TGTTTCCAAATGAGAGCACATTATCA 59.566 34.615 0.00 0.00 39.19 2.15
840 1329 9.463443 GTTGCATTATAATCCCACTTACATTTC 57.537 33.333 0.00 0.00 0.00 2.17
980 1479 1.068954 CCCTTTCTTTGTTGAGCGAGC 60.069 52.381 0.00 0.00 0.00 5.03
988 1487 0.955919 TGTTGAGCGAGCGAGAGAGA 60.956 55.000 0.00 0.00 0.00 3.10
989 1488 0.248054 GTTGAGCGAGCGAGAGAGAG 60.248 60.000 0.00 0.00 0.00 3.20
990 1489 0.391793 TTGAGCGAGCGAGAGAGAGA 60.392 55.000 0.00 0.00 0.00 3.10
991 1490 0.809636 TGAGCGAGCGAGAGAGAGAG 60.810 60.000 0.00 0.00 0.00 3.20
992 1491 0.529773 GAGCGAGCGAGAGAGAGAGA 60.530 60.000 0.00 0.00 0.00 3.10
993 1492 0.530650 AGCGAGCGAGAGAGAGAGAG 60.531 60.000 0.00 0.00 0.00 3.20
1011 1548 1.812922 GAGAGACATGGCGGCACTG 60.813 63.158 16.34 16.17 0.00 3.66
1034 1571 0.607217 CTCAAGCTCATGGTGCCACA 60.607 55.000 0.00 0.00 0.00 4.17
1035 1572 0.607217 TCAAGCTCATGGTGCCACAG 60.607 55.000 0.00 0.00 0.00 3.66
1036 1573 1.303888 AAGCTCATGGTGCCACAGG 60.304 57.895 0.00 0.00 0.00 4.00
1072 1612 1.753078 CTGCTGCTCATGCCACCAT 60.753 57.895 0.00 0.00 38.71 3.55
1114 1654 0.693049 TTTGCCTCCTTCCTCAGTCC 59.307 55.000 0.00 0.00 0.00 3.85
1118 1658 1.619977 GCCTCCTTCCTCAGTCCTGTA 60.620 57.143 0.00 0.00 0.00 2.74
1121 1661 4.547671 CCTCCTTCCTCAGTCCTGTATTA 58.452 47.826 0.00 0.00 0.00 0.98
1159 1699 2.050144 TGACACTCTGCTTCCTTCCTT 58.950 47.619 0.00 0.00 0.00 3.36
1161 1701 1.349357 ACACTCTGCTTCCTTCCTTCC 59.651 52.381 0.00 0.00 0.00 3.46
1184 1724 9.760077 TTCCTCGGTGTTCTAATATTATTTCTC 57.240 33.333 0.00 0.00 0.00 2.87
1185 1725 8.920174 TCCTCGGTGTTCTAATATTATTTCTCA 58.080 33.333 0.00 0.00 0.00 3.27
1212 1753 2.749621 CCAGTTTATTGCTGGTCTGGTC 59.250 50.000 3.37 0.00 46.22 4.02
1216 1757 3.334583 TTATTGCTGGTCTGGTCTGTC 57.665 47.619 0.00 0.00 0.00 3.51
1236 1785 8.660373 GTCTGTCAGTGAAAGGATTGTAATAAG 58.340 37.037 10.53 0.00 0.00 1.73
1265 1814 4.038642 TGCCCAAATAGTTGAAAGGTTCAC 59.961 41.667 4.10 0.00 39.87 3.18
1291 1840 7.234384 CGAACTAACACCAGTTAATCACATTC 58.766 38.462 0.00 0.00 39.58 2.67
1307 1856 6.114187 TCACATTCTCTTTGTAGGATGTGT 57.886 37.500 19.64 0.00 39.15 3.72
1387 1936 3.011517 TGAGCAAGAGGAGCCCCC 61.012 66.667 0.00 0.00 0.00 5.40
1618 2169 2.127003 GCGCAAGTTGTAACCGCC 60.127 61.111 12.75 0.00 38.84 6.13
1721 4036 4.923893 TCTTGCAACAAAACTGTCAGATG 58.076 39.130 6.91 5.28 0.00 2.90
1792 4107 2.357050 CCATATCCACAGGTTGGCTTCA 60.357 50.000 0.00 0.00 46.47 3.02
1799 4114 3.553508 CCACAGGTTGGCTTCAAAATGAG 60.554 47.826 0.00 0.00 39.07 2.90
1898 4214 4.000988 TGTAAGCTGCAAAAGTAGTAGCC 58.999 43.478 1.02 0.00 44.41 3.93
1901 4217 1.393883 GCTGCAAAAGTAGTAGCCGAC 59.606 52.381 0.00 0.00 38.55 4.79
1906 4222 5.424757 TGCAAAAGTAGTAGCCGACATATT 58.575 37.500 0.00 0.00 0.00 1.28
1909 4225 6.073927 GCAAAAGTAGTAGCCGACATATTACC 60.074 42.308 0.00 0.00 0.00 2.85
2004 4322 0.677288 ATCCGAACGTCTCCACACAA 59.323 50.000 0.00 0.00 0.00 3.33
2101 4419 2.593775 CGGTTACATTCTGCGCAATTTG 59.406 45.455 13.05 11.49 0.00 2.32
2149 4494 4.280436 TGATGGTTGAGTTTCATACCGT 57.720 40.909 0.00 0.00 33.33 4.83
2186 4531 1.399714 ACGAGAACGATGCCATCCTA 58.600 50.000 0.00 0.00 42.66 2.94
2211 4556 3.339141 GAAATTCCGGACTCAGAAGCTT 58.661 45.455 1.83 0.00 0.00 3.74
2221 4566 5.249420 GGACTCAGAAGCTTAGTGGAAATT 58.751 41.667 5.09 0.00 0.00 1.82
2232 4583 0.039527 GTGGAAATTGACCGTGGTGC 60.040 55.000 0.00 0.00 0.00 5.01
2261 4612 2.730934 AGTAGCGACATCACTCCCTA 57.269 50.000 0.00 0.00 0.00 3.53
2311 4668 6.904463 TTAACCTAAAATCAAACACTCCCC 57.096 37.500 0.00 0.00 0.00 4.81
2316 4673 6.436218 ACCTAAAATCAAACACTCCCCATTAC 59.564 38.462 0.00 0.00 0.00 1.89
2325 4682 6.575244 AACACTCCCCATTACTATTGATCA 57.425 37.500 0.00 0.00 0.00 2.92
2328 4685 5.466728 CACTCCCCATTACTATTGATCAACG 59.533 44.000 11.07 7.64 0.00 4.10
2351 4708 8.260433 ACGTCATTGTTAATAAAACGTTTGTC 57.740 30.769 15.46 2.85 0.00 3.18
2435 4792 5.263599 TGCCATTGTTAGAGATCATTTGGT 58.736 37.500 0.00 0.00 0.00 3.67
2436 4793 5.716228 TGCCATTGTTAGAGATCATTTGGTT 59.284 36.000 0.00 0.00 0.00 3.67
2448 4805 6.299141 AGATCATTTGGTTGTGTGAAGTACT 58.701 36.000 0.00 0.00 0.00 2.73
2457 4814 5.527582 GGTTGTGTGAAGTACTGTTCTCATT 59.472 40.000 0.00 0.00 33.71 2.57
2462 4819 7.335673 TGTGTGAAGTACTGTTCTCATTCAAAA 59.664 33.333 0.00 0.00 33.71 2.44
2473 4830 6.017109 TGTTCTCATTCAAAACTAAGCACCTC 60.017 38.462 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.261180 TGTCAAACTTGTGAACATTGTTTTTAA 57.739 25.926 3.08 0.00 33.72 1.52
39 40 8.818141 TGTCAAACTTGTGAACATTGTTTTTA 57.182 26.923 3.08 0.00 33.72 1.52
43 44 7.721286 TTTTGTCAAACTTGTGAACATTGTT 57.279 28.000 0.63 0.63 0.00 2.83
44 45 7.440856 ACTTTTTGTCAAACTTGTGAACATTGT 59.559 29.630 0.00 0.00 0.00 2.71
45 46 7.795859 ACTTTTTGTCAAACTTGTGAACATTG 58.204 30.769 0.00 0.00 0.00 2.82
46 47 7.961325 ACTTTTTGTCAAACTTGTGAACATT 57.039 28.000 0.00 0.00 0.00 2.71
47 48 7.655328 TGAACTTTTTGTCAAACTTGTGAACAT 59.345 29.630 0.00 0.00 0.00 2.71
115 116 5.130145 TCAAACCCATGAACCTTGTTCAAAT 59.870 36.000 13.08 0.00 31.55 2.32
130 131 4.751767 TGCAAACTTTTCTCAAACCCAT 57.248 36.364 0.00 0.00 0.00 4.00
131 132 4.543590 TTGCAAACTTTTCTCAAACCCA 57.456 36.364 0.00 0.00 0.00 4.51
144 145 7.389053 TGTGAACCTTGTTAAAATTTGCAAACT 59.611 29.630 15.41 0.00 0.00 2.66
292 566 2.970324 TTCGACGCCACAACCAGC 60.970 61.111 0.00 0.00 0.00 4.85
318 592 2.758497 GCATTGTTGCTGCAATCCC 58.242 52.632 19.11 6.44 45.77 3.85
503 989 8.012241 GTGATGTGTGTTTAGCTAAAGAGAAAG 58.988 37.037 19.16 0.00 0.00 2.62
504 990 7.497579 TGTGATGTGTGTTTAGCTAAAGAGAAA 59.502 33.333 19.16 12.16 0.00 2.52
505 991 6.989759 TGTGATGTGTGTTTAGCTAAAGAGAA 59.010 34.615 19.16 6.85 0.00 2.87
513 1000 3.148412 TGCATGTGATGTGTGTTTAGCT 58.852 40.909 0.00 0.00 0.00 3.32
517 1004 5.884232 AGATAGATGCATGTGATGTGTGTTT 59.116 36.000 2.46 0.00 0.00 2.83
545 1032 8.923270 TCCTGAACAATGACACACATATAGATA 58.077 33.333 0.00 0.00 38.38 1.98
549 1036 9.546428 CTAATCCTGAACAATGACACACATATA 57.454 33.333 0.00 0.00 38.38 0.86
550 1037 8.267183 TCTAATCCTGAACAATGACACACATAT 58.733 33.333 0.00 0.00 38.38 1.78
551 1038 7.619965 TCTAATCCTGAACAATGACACACATA 58.380 34.615 0.00 0.00 38.38 2.29
552 1039 6.475504 TCTAATCCTGAACAATGACACACAT 58.524 36.000 0.00 0.00 41.45 3.21
555 1042 5.248248 TCCTCTAATCCTGAACAATGACACA 59.752 40.000 0.00 0.00 0.00 3.72
565 1052 8.577296 CATAGACGTTATTCCTCTAATCCTGAA 58.423 37.037 0.00 0.00 0.00 3.02
573 1060 6.546403 AGCAAGACATAGACGTTATTCCTCTA 59.454 38.462 0.00 0.00 0.00 2.43
584 1071 5.184096 ACCCATAGATAGCAAGACATAGACG 59.816 44.000 0.00 0.00 0.00 4.18
591 1078 3.475566 TGCACCCATAGATAGCAAGAC 57.524 47.619 0.00 0.00 31.42 3.01
623 1112 2.203084 TGTGCGTTTTGAGCCGGA 60.203 55.556 5.05 0.00 0.00 5.14
638 1127 1.072331 GTCCCACCATGTTCTCAGTGT 59.928 52.381 0.00 0.00 0.00 3.55
642 1131 0.036732 GCAGTCCCACCATGTTCTCA 59.963 55.000 0.00 0.00 0.00 3.27
652 1141 1.968540 GGCTCTTGTGCAGTCCCAC 60.969 63.158 0.00 0.00 36.28 4.61
681 1170 2.803133 GCAGCTATGGTTACGATGCTCA 60.803 50.000 0.00 0.00 0.00 4.26
695 1184 1.135024 CAAAATTGTGGCGGCAGCTAT 60.135 47.619 13.91 7.27 44.37 2.97
696 1185 0.243365 CAAAATTGTGGCGGCAGCTA 59.757 50.000 13.91 0.00 44.37 3.32
717 1206 0.593128 CTTCCAAAACTGGCGACTGG 59.407 55.000 0.00 0.00 0.00 4.00
730 1219 1.301716 GAGGCTGCACGTCTTCCAA 60.302 57.895 0.50 0.00 0.00 3.53
770 1259 6.433716 TGATAATGTGCTCTCATTTGGAAACA 59.566 34.615 3.01 0.00 38.68 2.83
795 1284 9.547753 AATGCAACTATTATATCTTCAAGACGT 57.452 29.630 0.00 0.00 0.00 4.34
930 1429 4.812403 AGATCAGATTCAGAGGAGAGGA 57.188 45.455 0.00 0.00 0.00 3.71
980 1479 3.801114 TGTCTCTCTCTCTCTCTCTCG 57.199 52.381 0.00 0.00 0.00 4.04
988 1487 1.391157 GCCGCCATGTCTCTCTCTCT 61.391 60.000 0.00 0.00 0.00 3.10
989 1488 1.067250 GCCGCCATGTCTCTCTCTC 59.933 63.158 0.00 0.00 0.00 3.20
990 1489 1.683707 TGCCGCCATGTCTCTCTCT 60.684 57.895 0.00 0.00 0.00 3.10
991 1490 1.520342 GTGCCGCCATGTCTCTCTC 60.520 63.158 0.00 0.00 0.00 3.20
992 1491 1.986757 AGTGCCGCCATGTCTCTCT 60.987 57.895 0.00 0.00 0.00 3.10
993 1492 1.812922 CAGTGCCGCCATGTCTCTC 60.813 63.158 0.00 0.00 0.00 3.20
1072 1612 3.105283 GCTTACCAGGAGGAAGTAGGAA 58.895 50.000 0.00 0.00 38.69 3.36
1159 1699 8.920174 TGAGAAATAATATTAGAACACCGAGGA 58.080 33.333 1.02 0.00 0.00 3.71
1161 1701 9.751542 AGTGAGAAATAATATTAGAACACCGAG 57.248 33.333 1.02 0.00 0.00 4.63
1212 1753 7.335422 AGCTTATTACAATCCTTTCACTGACAG 59.665 37.037 0.00 0.00 0.00 3.51
1216 1757 6.127925 TGCAGCTTATTACAATCCTTTCACTG 60.128 38.462 0.00 0.00 0.00 3.66
1236 1785 1.477700 TCAACTATTTGGGCATGCAGC 59.522 47.619 21.36 2.19 44.65 5.25
1265 1814 4.992319 TGTGATTAACTGGTGTTAGTTCGG 59.008 41.667 0.00 0.00 41.01 4.30
1291 1840 3.411446 TGGCAACACATCCTACAAAGAG 58.589 45.455 0.00 0.00 46.17 2.85
1307 1856 1.596934 GGATCAGGACGAGTGGCAA 59.403 57.895 0.00 0.00 0.00 4.52
1340 1889 0.329596 GGTCCTCTTGTTGCCCTCAT 59.670 55.000 0.00 0.00 0.00 2.90
1353 1902 3.386237 AGCTCCGTGCAGGTCCTC 61.386 66.667 5.57 0.00 45.94 3.71
1387 1936 1.315981 TGGTGCTCGCAGTAGAGGAG 61.316 60.000 0.00 0.00 39.25 3.69
1418 1967 2.125552 CCTCGATGCGGCAGTTGA 60.126 61.111 9.25 5.16 0.00 3.18
1488 2037 1.465777 CAGCATCGTCACATTCAGCAA 59.534 47.619 0.00 0.00 0.00 3.91
1721 4036 9.929722 TGTCGCTACACATAAATTTTTCATATC 57.070 29.630 0.00 0.00 0.00 1.63
1792 4107 6.057533 TCTGTGTGAGACATTGACTCATTTT 58.942 36.000 19.13 0.00 44.41 1.82
1799 4114 3.124806 CAGCATCTGTGTGAGACATTGAC 59.875 47.826 0.00 0.00 32.74 3.18
2057 4375 9.174166 ACCGCAACTATAAACATTCTCTATTTT 57.826 29.630 0.00 0.00 0.00 1.82
2060 4378 9.257651 GTAACCGCAACTATAAACATTCTCTAT 57.742 33.333 0.00 0.00 0.00 1.98
2061 4379 8.252417 TGTAACCGCAACTATAAACATTCTCTA 58.748 33.333 0.00 0.00 0.00 2.43
2066 4384 8.181573 CAGAATGTAACCGCAACTATAAACATT 58.818 33.333 0.00 0.00 38.60 2.71
2101 4419 3.660501 TGTGTGACTGTCCACTATGTC 57.339 47.619 21.61 0.00 37.89 3.06
2149 4494 4.402474 TCTCGTTCCAAGATAGAGATTGCA 59.598 41.667 0.00 0.00 33.58 4.08
2186 4531 4.265073 CTTCTGAGTCCGGAATTTCCAAT 58.735 43.478 5.23 0.00 37.08 3.16
2211 4556 2.773487 CACCACGGTCAATTTCCACTA 58.227 47.619 0.00 0.00 0.00 2.74
2221 4566 1.080366 GTGTATCGCACCACGGTCA 60.080 57.895 0.00 0.00 42.10 4.02
2232 4583 4.027621 GTGATGTCGCTACTTTGTGTATCG 60.028 45.833 0.00 0.00 40.75 2.92
2261 4612 4.737855 TCCGTTTAGCTATCTTTCTGCT 57.262 40.909 0.00 0.00 40.43 4.24
2325 4682 8.617761 ACAAACGTTTTATTAACAATGACGTT 57.382 26.923 11.66 12.62 41.93 3.99
2351 4708 2.349590 TGCATCGTGTTCCATCTCTTG 58.650 47.619 0.00 0.00 0.00 3.02
2371 4728 4.384868 CCCCAGGTGAAACTCGGTAATAAT 60.385 45.833 0.00 0.00 36.74 1.28
2372 4729 3.054948 CCCCAGGTGAAACTCGGTAATAA 60.055 47.826 0.00 0.00 36.74 1.40
2373 4730 2.502538 CCCCAGGTGAAACTCGGTAATA 59.497 50.000 0.00 0.00 36.74 0.98
2435 4792 6.345298 TGAATGAGAACAGTACTTCACACAA 58.655 36.000 0.00 0.00 0.00 3.33
2436 4793 5.912892 TGAATGAGAACAGTACTTCACACA 58.087 37.500 0.00 0.00 0.00 3.72
2448 4805 5.827797 AGGTGCTTAGTTTTGAATGAGAACA 59.172 36.000 0.00 0.00 0.00 3.18
2457 4814 8.758829 TCTTATATCAGAGGTGCTTAGTTTTGA 58.241 33.333 0.00 0.00 0.00 2.69
2462 4819 8.079211 TGTTTCTTATATCAGAGGTGCTTAGT 57.921 34.615 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.