Multiple sequence alignment - TraesCS5B01G050400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G050400 chr5B 100.000 3081 0 0 1 3081 55420854 55423934 0.000000e+00 5690.0
1 TraesCS5B01G050400 chr5B 98.454 194 3 0 2888 3081 428040811 428040618 2.940000e-90 342.0
2 TraesCS5B01G050400 chr5D 91.124 1780 118 12 344 2112 52320504 52322254 0.000000e+00 2375.0
3 TraesCS5B01G050400 chr5D 91.923 780 54 6 2109 2887 528226420 528225649 0.000000e+00 1083.0
4 TraesCS5B01G050400 chr5A 93.046 834 53 1 1001 1829 41439090 41439923 0.000000e+00 1214.0
5 TraesCS5B01G050400 chr5A 85.848 643 63 14 248 874 41438460 41439090 0.000000e+00 658.0
6 TraesCS5B01G050400 chr5A 94.502 291 16 0 1821 2111 41451166 41451456 1.680000e-122 449.0
7 TraesCS5B01G050400 chr5A 85.333 300 32 7 2464 2760 403878363 403878073 1.800000e-77 300.0
8 TraesCS5B01G050400 chr7A 85.639 1142 141 15 996 2117 669089575 669088437 0.000000e+00 1179.0
9 TraesCS5B01G050400 chr7A 85.128 1170 150 17 967 2117 669144556 669143392 0.000000e+00 1175.0
10 TraesCS5B01G050400 chr7A 85.377 1142 144 16 996 2117 669188391 669187253 0.000000e+00 1162.0
11 TraesCS5B01G050400 chr7A 85.302 1143 142 19 996 2117 669170462 669169325 0.000000e+00 1157.0
12 TraesCS5B01G050400 chr7A 85.188 1141 147 14 996 2117 669118102 669116965 0.000000e+00 1151.0
13 TraesCS5B01G050400 chr7A 85.000 300 34 7 2464 2760 297437319 297437610 8.350000e-76 294.0
14 TraesCS5B01G050400 chr7A 80.769 338 43 12 250 569 669153267 669152934 8.530000e-61 244.0
15 TraesCS5B01G050400 chr7A 79.882 338 46 13 250 569 669178682 669178349 8.590000e-56 228.0
16 TraesCS5B01G050400 chr7A 83.178 107 12 2 248 348 669127419 669127313 3.270000e-15 93.5
17 TraesCS5B01G050400 chr7A 83.178 107 12 2 248 348 669171298 669171192 3.270000e-15 93.5
18 TraesCS5B01G050400 chr7B 89.612 799 62 9 2093 2884 115904300 115905084 0.000000e+00 996.0
19 TraesCS5B01G050400 chr2B 90.468 598 45 4 2291 2887 599437249 599436663 0.000000e+00 778.0
20 TraesCS5B01G050400 chr2B 98.454 194 3 0 2888 3081 118368651 118368458 2.940000e-90 342.0
21 TraesCS5B01G050400 chr2B 98.454 194 3 0 2888 3081 707572943 707573136 2.940000e-90 342.0
22 TraesCS5B01G050400 chr2B 98.454 194 3 0 2888 3081 707581242 707581435 2.940000e-90 342.0
23 TraesCS5B01G050400 chr2B 83.065 372 55 5 2089 2459 33688897 33689261 6.370000e-87 331.0
24 TraesCS5B01G050400 chr2B 83.784 333 46 7 2109 2439 68873346 68873672 2.980000e-80 309.0
25 TraesCS5B01G050400 chr2B 100.000 30 0 0 2428 2457 68889194 68889223 4.290000e-04 56.5
26 TraesCS5B01G050400 chr2B 100.000 30 0 0 2428 2457 68905665 68905694 4.290000e-04 56.5
27 TraesCS5B01G050400 chr4A 89.423 416 38 4 2473 2887 656931571 656931981 1.270000e-143 520.0
28 TraesCS5B01G050400 chr4A 85.955 356 45 2 2105 2459 656930949 656931300 2.900000e-100 375.0
29 TraesCS5B01G050400 chr1B 98.974 195 2 0 2887 3081 653119090 653118896 1.760000e-92 350.0
30 TraesCS5B01G050400 chr1B 98.462 195 3 0 2887 3081 387286788 387286594 8.180000e-91 344.0
31 TraesCS5B01G050400 chr4B 98.454 194 3 0 2888 3081 495277688 495277881 2.940000e-90 342.0
32 TraesCS5B01G050400 chr4B 96.602 206 5 2 2878 3081 12670579 12670374 1.060000e-89 340.0
33 TraesCS5B01G050400 chr4B 97.959 196 4 0 2886 3081 461865242 461865047 1.060000e-89 340.0
34 TraesCS5B01G050400 chr4B 81.818 297 45 5 2112 2407 636704273 636704561 1.100000e-59 241.0
35 TraesCS5B01G050400 chr7D 83.944 355 53 2 2105 2459 40651290 40650940 1.370000e-88 337.0
36 TraesCS5B01G050400 chr7D 81.714 350 52 5 2112 2459 617524385 617524046 6.500000e-72 281.0
37 TraesCS5B01G050400 chr3A 85.149 303 34 9 2464 2763 732793634 732793340 1.800000e-77 300.0
38 TraesCS5B01G050400 chr3A 84.950 299 32 8 2464 2760 112325644 112325931 1.080000e-74 291.0
39 TraesCS5B01G050400 chr3A 84.667 300 35 7 2464 2760 726085785 726086076 3.890000e-74 289.0
40 TraesCS5B01G050400 chr2D 82.155 297 45 3 2112 2407 312054398 312054109 6.600000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G050400 chr5B 55420854 55423934 3080 False 5690.00 5690 100.000 1 3081 1 chr5B.!!$F1 3080
1 TraesCS5B01G050400 chr5D 52320504 52322254 1750 False 2375.00 2375 91.124 344 2112 1 chr5D.!!$F1 1768
2 TraesCS5B01G050400 chr5D 528225649 528226420 771 True 1083.00 1083 91.923 2109 2887 1 chr5D.!!$R1 778
3 TraesCS5B01G050400 chr5A 41438460 41439923 1463 False 936.00 1214 89.447 248 1829 2 chr5A.!!$F2 1581
4 TraesCS5B01G050400 chr7A 669088437 669089575 1138 True 1179.00 1179 85.639 996 2117 1 chr7A.!!$R1 1121
5 TraesCS5B01G050400 chr7A 669143392 669144556 1164 True 1175.00 1175 85.128 967 2117 1 chr7A.!!$R4 1150
6 TraesCS5B01G050400 chr7A 669187253 669188391 1138 True 1162.00 1162 85.377 996 2117 1 chr7A.!!$R7 1121
7 TraesCS5B01G050400 chr7A 669116965 669118102 1137 True 1151.00 1151 85.188 996 2117 1 chr7A.!!$R2 1121
8 TraesCS5B01G050400 chr7A 669169325 669171298 1973 True 625.25 1157 84.240 248 2117 2 chr7A.!!$R8 1869
9 TraesCS5B01G050400 chr7B 115904300 115905084 784 False 996.00 996 89.612 2093 2884 1 chr7B.!!$F1 791
10 TraesCS5B01G050400 chr2B 599436663 599437249 586 True 778.00 778 90.468 2291 2887 1 chr2B.!!$R2 596
11 TraesCS5B01G050400 chr4A 656930949 656931981 1032 False 447.50 520 87.689 2105 2887 2 chr4A.!!$F1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.036952 ACTGCGAGTGAGGAACATGG 60.037 55.0 0.00 0.0 0.0 3.66 F
835 999 0.103208 CCTACCGTAGCAGCAGGAAG 59.897 60.0 8.37 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 2013 0.179129 GGCATTTCTCCACCATTGCG 60.179 55.0 0.0 0.0 0.00 4.85 R
2343 2566 0.395311 CATGCAGAGTCAAGGGGCAT 60.395 55.0 0.0 0.0 45.33 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.767759 GCTATGGGCATCAACAAGGT 58.232 50.000 0.00 0.00 41.35 3.50
38 39 2.930950 GCTATGGGCATCAACAAGGTA 58.069 47.619 0.00 0.00 41.35 3.08
39 40 2.880890 GCTATGGGCATCAACAAGGTAG 59.119 50.000 0.00 0.00 41.35 3.18
40 41 3.433598 GCTATGGGCATCAACAAGGTAGA 60.434 47.826 0.00 0.00 41.35 2.59
41 42 2.787473 TGGGCATCAACAAGGTAGAG 57.213 50.000 0.00 0.00 0.00 2.43
42 43 1.281867 TGGGCATCAACAAGGTAGAGG 59.718 52.381 0.00 0.00 0.00 3.69
43 44 1.559682 GGGCATCAACAAGGTAGAGGA 59.440 52.381 0.00 0.00 0.00 3.71
44 45 2.026262 GGGCATCAACAAGGTAGAGGAA 60.026 50.000 0.00 0.00 0.00 3.36
45 46 3.010420 GGCATCAACAAGGTAGAGGAAC 58.990 50.000 0.00 0.00 0.00 3.62
46 47 3.559171 GGCATCAACAAGGTAGAGGAACA 60.559 47.826 0.00 0.00 0.00 3.18
47 48 3.437049 GCATCAACAAGGTAGAGGAACAC 59.563 47.826 0.00 0.00 0.00 3.32
48 49 4.641396 CATCAACAAGGTAGAGGAACACA 58.359 43.478 0.00 0.00 0.00 3.72
49 50 4.764050 TCAACAAGGTAGAGGAACACAA 57.236 40.909 0.00 0.00 0.00 3.33
50 51 5.105567 TCAACAAGGTAGAGGAACACAAA 57.894 39.130 0.00 0.00 0.00 2.83
51 52 5.690865 TCAACAAGGTAGAGGAACACAAAT 58.309 37.500 0.00 0.00 0.00 2.32
52 53 5.763204 TCAACAAGGTAGAGGAACACAAATC 59.237 40.000 0.00 0.00 0.00 2.17
53 54 5.304686 ACAAGGTAGAGGAACACAAATCA 57.695 39.130 0.00 0.00 0.00 2.57
54 55 5.308825 ACAAGGTAGAGGAACACAAATCAG 58.691 41.667 0.00 0.00 0.00 2.90
55 56 4.559862 AGGTAGAGGAACACAAATCAGG 57.440 45.455 0.00 0.00 0.00 3.86
56 57 3.010420 GGTAGAGGAACACAAATCAGGC 58.990 50.000 0.00 0.00 0.00 4.85
57 58 1.813513 AGAGGAACACAAATCAGGCG 58.186 50.000 0.00 0.00 0.00 5.52
58 59 0.804989 GAGGAACACAAATCAGGCGG 59.195 55.000 0.00 0.00 0.00 6.13
59 60 1.212751 GGAACACAAATCAGGCGGC 59.787 57.895 0.00 0.00 0.00 6.53
60 61 1.523154 GGAACACAAATCAGGCGGCA 61.523 55.000 13.08 0.00 0.00 5.69
61 62 0.109597 GAACACAAATCAGGCGGCAG 60.110 55.000 13.08 2.41 0.00 4.85
62 63 0.537143 AACACAAATCAGGCGGCAGA 60.537 50.000 13.08 9.70 0.00 4.26
63 64 0.957395 ACACAAATCAGGCGGCAGAG 60.957 55.000 13.08 0.00 0.00 3.35
64 65 1.377725 ACAAATCAGGCGGCAGAGG 60.378 57.895 13.08 5.36 0.00 3.69
65 66 2.439156 AAATCAGGCGGCAGAGGC 60.439 61.111 13.08 0.00 40.13 4.70
66 67 3.272364 AAATCAGGCGGCAGAGGCA 62.272 57.895 13.08 0.00 43.71 4.75
67 68 3.984193 AATCAGGCGGCAGAGGCAC 62.984 63.158 13.08 0.00 43.71 5.01
84 85 3.521995 ACTGCGAGTGAGGAACATG 57.478 52.632 0.00 0.00 0.00 3.21
85 86 0.036952 ACTGCGAGTGAGGAACATGG 60.037 55.000 0.00 0.00 0.00 3.66
86 87 0.247460 CTGCGAGTGAGGAACATGGA 59.753 55.000 0.00 0.00 0.00 3.41
87 88 0.904649 TGCGAGTGAGGAACATGGAT 59.095 50.000 0.00 0.00 0.00 3.41
88 89 1.293924 GCGAGTGAGGAACATGGATG 58.706 55.000 0.00 0.00 0.00 3.51
89 90 1.134699 GCGAGTGAGGAACATGGATGA 60.135 52.381 0.00 0.00 0.00 2.92
90 91 2.677902 GCGAGTGAGGAACATGGATGAA 60.678 50.000 0.00 0.00 0.00 2.57
91 92 3.801698 CGAGTGAGGAACATGGATGAAT 58.198 45.455 0.00 0.00 0.00 2.57
92 93 3.558829 CGAGTGAGGAACATGGATGAATG 59.441 47.826 0.00 0.00 0.00 2.67
93 94 4.681512 CGAGTGAGGAACATGGATGAATGA 60.682 45.833 0.00 0.00 0.00 2.57
94 95 5.183530 AGTGAGGAACATGGATGAATGAA 57.816 39.130 0.00 0.00 0.00 2.57
95 96 4.946157 AGTGAGGAACATGGATGAATGAAC 59.054 41.667 0.00 0.00 0.00 3.18
96 97 4.701651 GTGAGGAACATGGATGAATGAACA 59.298 41.667 0.00 0.00 0.00 3.18
97 98 5.359009 GTGAGGAACATGGATGAATGAACAT 59.641 40.000 0.00 0.00 0.00 2.71
98 99 5.358725 TGAGGAACATGGATGAATGAACATG 59.641 40.000 0.00 0.00 44.61 3.21
99 100 5.512298 AGGAACATGGATGAATGAACATGA 58.488 37.500 10.12 0.00 42.39 3.07
100 101 5.953548 AGGAACATGGATGAATGAACATGAA 59.046 36.000 10.12 0.00 42.39 2.57
101 102 6.438108 AGGAACATGGATGAATGAACATGAAA 59.562 34.615 10.12 0.00 42.39 2.69
102 103 7.038870 AGGAACATGGATGAATGAACATGAAAA 60.039 33.333 10.12 0.00 42.39 2.29
103 104 7.277098 GGAACATGGATGAATGAACATGAAAAG 59.723 37.037 10.12 0.00 42.39 2.27
104 105 6.636705 ACATGGATGAATGAACATGAAAAGG 58.363 36.000 10.12 0.00 42.39 3.11
105 106 6.438108 ACATGGATGAATGAACATGAAAAGGA 59.562 34.615 10.12 0.00 42.39 3.36
106 107 6.914654 TGGATGAATGAACATGAAAAGGAA 57.085 33.333 0.00 0.00 0.00 3.36
107 108 7.300556 TGGATGAATGAACATGAAAAGGAAA 57.699 32.000 0.00 0.00 0.00 3.13
108 109 7.380536 TGGATGAATGAACATGAAAAGGAAAG 58.619 34.615 0.00 0.00 0.00 2.62
109 110 7.015487 TGGATGAATGAACATGAAAAGGAAAGT 59.985 33.333 0.00 0.00 0.00 2.66
110 111 7.874528 GGATGAATGAACATGAAAAGGAAAGTT 59.125 33.333 0.00 0.00 0.00 2.66
111 112 9.912634 GATGAATGAACATGAAAAGGAAAGTTA 57.087 29.630 0.00 0.00 0.00 2.24
116 117 9.971922 ATGAACATGAAAAGGAAAGTTAAAGAG 57.028 29.630 0.00 0.00 0.00 2.85
117 118 9.184523 TGAACATGAAAAGGAAAGTTAAAGAGA 57.815 29.630 0.00 0.00 0.00 3.10
118 119 9.452065 GAACATGAAAAGGAAAGTTAAAGAGAC 57.548 33.333 0.00 0.00 0.00 3.36
119 120 7.941919 ACATGAAAAGGAAAGTTAAAGAGACC 58.058 34.615 0.00 0.00 0.00 3.85
120 121 7.780271 ACATGAAAAGGAAAGTTAAAGAGACCT 59.220 33.333 0.00 0.00 0.00 3.85
121 122 7.568199 TGAAAAGGAAAGTTAAAGAGACCTG 57.432 36.000 0.00 0.00 0.00 4.00
122 123 6.546034 TGAAAAGGAAAGTTAAAGAGACCTGG 59.454 38.462 0.00 0.00 0.00 4.45
123 124 5.906772 AAGGAAAGTTAAAGAGACCTGGA 57.093 39.130 0.00 0.00 0.00 3.86
124 125 5.906772 AGGAAAGTTAAAGAGACCTGGAA 57.093 39.130 0.00 0.00 0.00 3.53
125 126 5.870706 AGGAAAGTTAAAGAGACCTGGAAG 58.129 41.667 0.00 0.00 0.00 3.46
161 162 9.654663 TTTTAAAATGAAAAAGAGAAAACCGGA 57.345 25.926 9.46 0.00 0.00 5.14
162 163 9.654663 TTTAAAATGAAAAAGAGAAAACCGGAA 57.345 25.926 9.46 0.00 0.00 4.30
163 164 9.654663 TTAAAATGAAAAAGAGAAAACCGGAAA 57.345 25.926 9.46 0.00 0.00 3.13
164 165 8.731275 AAAATGAAAAAGAGAAAACCGGAAAT 57.269 26.923 9.46 0.00 0.00 2.17
165 166 9.825109 AAAATGAAAAAGAGAAAACCGGAAATA 57.175 25.926 9.46 0.00 0.00 1.40
166 167 9.476202 AAATGAAAAAGAGAAAACCGGAAATAG 57.524 29.630 9.46 0.00 0.00 1.73
167 168 6.977213 TGAAAAAGAGAAAACCGGAAATAGG 58.023 36.000 9.46 0.00 0.00 2.57
168 169 5.386958 AAAAGAGAAAACCGGAAATAGGC 57.613 39.130 9.46 0.00 0.00 3.93
169 170 3.713826 AGAGAAAACCGGAAATAGGCA 57.286 42.857 9.46 0.00 0.00 4.75
170 171 4.028993 AGAGAAAACCGGAAATAGGCAA 57.971 40.909 9.46 0.00 0.00 4.52
171 172 4.403734 AGAGAAAACCGGAAATAGGCAAA 58.596 39.130 9.46 0.00 0.00 3.68
172 173 4.459337 AGAGAAAACCGGAAATAGGCAAAG 59.541 41.667 9.46 0.00 0.00 2.77
173 174 4.403734 AGAAAACCGGAAATAGGCAAAGA 58.596 39.130 9.46 0.00 0.00 2.52
174 175 4.830600 AGAAAACCGGAAATAGGCAAAGAA 59.169 37.500 9.46 0.00 0.00 2.52
175 176 4.783764 AAACCGGAAATAGGCAAAGAAG 57.216 40.909 9.46 0.00 0.00 2.85
176 177 2.723273 ACCGGAAATAGGCAAAGAAGG 58.277 47.619 9.46 0.00 0.00 3.46
177 178 2.307686 ACCGGAAATAGGCAAAGAAGGA 59.692 45.455 9.46 0.00 0.00 3.36
178 179 3.245122 ACCGGAAATAGGCAAAGAAGGAA 60.245 43.478 9.46 0.00 0.00 3.36
179 180 3.761752 CCGGAAATAGGCAAAGAAGGAAA 59.238 43.478 0.00 0.00 0.00 3.13
180 181 4.380550 CCGGAAATAGGCAAAGAAGGAAAC 60.381 45.833 0.00 0.00 0.00 2.78
181 182 4.380550 CGGAAATAGGCAAAGAAGGAAACC 60.381 45.833 0.00 0.00 0.00 3.27
182 183 4.380550 GGAAATAGGCAAAGAAGGAAACCG 60.381 45.833 0.00 0.00 0.00 4.44
183 184 2.194201 TAGGCAAAGAAGGAAACCGG 57.806 50.000 0.00 0.00 0.00 5.28
184 185 0.539669 AGGCAAAGAAGGAAACCGGG 60.540 55.000 6.32 0.00 0.00 5.73
185 186 0.538746 GGCAAAGAAGGAAACCGGGA 60.539 55.000 6.32 0.00 0.00 5.14
186 187 1.545841 GCAAAGAAGGAAACCGGGAT 58.454 50.000 6.32 0.00 0.00 3.85
187 188 1.202348 GCAAAGAAGGAAACCGGGATG 59.798 52.381 6.32 0.00 0.00 3.51
188 189 1.818674 CAAAGAAGGAAACCGGGATGG 59.181 52.381 6.32 0.00 46.41 3.51
189 190 0.323451 AAGAAGGAAACCGGGATGGC 60.323 55.000 6.32 0.00 43.94 4.40
190 191 1.001393 GAAGGAAACCGGGATGGCA 60.001 57.895 6.32 0.00 43.94 4.92
191 192 1.304134 AAGGAAACCGGGATGGCAC 60.304 57.895 6.32 0.00 43.94 5.01
192 193 2.754254 GGAAACCGGGATGGCACC 60.754 66.667 6.32 0.00 43.94 5.01
193 194 2.034999 GAAACCGGGATGGCACCA 59.965 61.111 6.32 0.00 43.94 4.17
194 195 2.035626 AAACCGGGATGGCACCAG 59.964 61.111 6.32 4.37 43.94 4.00
197 198 3.727258 CCGGGATGGCACCAGGAA 61.727 66.667 16.22 0.00 45.73 3.36
198 199 2.438434 CGGGATGGCACCAGGAAC 60.438 66.667 0.00 0.00 0.00 3.62
199 200 2.043953 GGGATGGCACCAGGAACC 60.044 66.667 0.00 0.00 0.00 3.62
200 201 2.438434 GGATGGCACCAGGAACCG 60.438 66.667 0.00 0.00 0.00 4.44
201 202 3.134127 GATGGCACCAGGAACCGC 61.134 66.667 0.00 0.00 0.00 5.68
204 205 4.778143 GGCACCAGGAACCGCGAT 62.778 66.667 8.23 0.00 0.00 4.58
205 206 3.195698 GCACCAGGAACCGCGATC 61.196 66.667 8.23 5.34 0.00 3.69
206 207 2.264480 CACCAGGAACCGCGATCA 59.736 61.111 8.23 0.00 0.00 2.92
207 208 1.375396 CACCAGGAACCGCGATCAA 60.375 57.895 8.23 0.00 0.00 2.57
208 209 0.953471 CACCAGGAACCGCGATCAAA 60.953 55.000 8.23 0.00 0.00 2.69
209 210 0.250553 ACCAGGAACCGCGATCAAAA 60.251 50.000 8.23 0.00 0.00 2.44
210 211 0.878416 CCAGGAACCGCGATCAAAAA 59.122 50.000 8.23 0.00 0.00 1.94
211 212 1.135689 CCAGGAACCGCGATCAAAAAG 60.136 52.381 8.23 0.00 0.00 2.27
212 213 1.804151 CAGGAACCGCGATCAAAAAGA 59.196 47.619 8.23 0.00 0.00 2.52
213 214 2.225491 CAGGAACCGCGATCAAAAAGAA 59.775 45.455 8.23 0.00 0.00 2.52
214 215 2.882137 AGGAACCGCGATCAAAAAGAAA 59.118 40.909 8.23 0.00 0.00 2.52
215 216 3.316868 AGGAACCGCGATCAAAAAGAAAA 59.683 39.130 8.23 0.00 0.00 2.29
216 217 4.022329 AGGAACCGCGATCAAAAAGAAAAT 60.022 37.500 8.23 0.00 0.00 1.82
217 218 4.089923 GGAACCGCGATCAAAAAGAAAATG 59.910 41.667 8.23 0.00 0.00 2.32
218 219 4.497473 ACCGCGATCAAAAAGAAAATGA 57.503 36.364 8.23 0.00 0.00 2.57
219 220 4.865776 ACCGCGATCAAAAAGAAAATGAA 58.134 34.783 8.23 0.00 0.00 2.57
220 221 5.285651 ACCGCGATCAAAAAGAAAATGAAA 58.714 33.333 8.23 0.00 0.00 2.69
221 222 5.751028 ACCGCGATCAAAAAGAAAATGAAAA 59.249 32.000 8.23 0.00 0.00 2.29
222 223 6.256757 ACCGCGATCAAAAAGAAAATGAAAAA 59.743 30.769 8.23 0.00 0.00 1.94
223 224 6.569693 CCGCGATCAAAAAGAAAATGAAAAAC 59.430 34.615 8.23 0.00 0.00 2.43
224 225 6.569693 CGCGATCAAAAAGAAAATGAAAAACC 59.430 34.615 0.00 0.00 0.00 3.27
225 226 7.516627 CGCGATCAAAAAGAAAATGAAAAACCT 60.517 33.333 0.00 0.00 0.00 3.50
226 227 8.760569 GCGATCAAAAAGAAAATGAAAAACCTA 58.239 29.630 0.00 0.00 0.00 3.08
230 231 9.442047 TCAAAAAGAAAATGAAAAACCTAAGCA 57.558 25.926 0.00 0.00 0.00 3.91
233 234 7.425577 AAGAAAATGAAAAACCTAAGCATGC 57.574 32.000 10.51 10.51 0.00 4.06
234 235 5.934043 AGAAAATGAAAAACCTAAGCATGCC 59.066 36.000 15.66 0.00 0.00 4.40
235 236 4.888326 AATGAAAAACCTAAGCATGCCA 57.112 36.364 15.66 1.07 0.00 4.92
236 237 3.658757 TGAAAAACCTAAGCATGCCAC 57.341 42.857 15.66 0.00 0.00 5.01
237 238 2.298729 TGAAAAACCTAAGCATGCCACC 59.701 45.455 15.66 0.00 0.00 4.61
238 239 1.266178 AAAACCTAAGCATGCCACCC 58.734 50.000 15.66 0.00 0.00 4.61
239 240 0.614697 AAACCTAAGCATGCCACCCC 60.615 55.000 15.66 0.00 0.00 4.95
240 241 1.799157 AACCTAAGCATGCCACCCCA 61.799 55.000 15.66 0.00 0.00 4.96
241 242 1.231068 CCTAAGCATGCCACCCCAT 59.769 57.895 15.66 0.00 0.00 4.00
242 243 0.478072 CCTAAGCATGCCACCCCATA 59.522 55.000 15.66 0.00 0.00 2.74
243 244 1.546323 CCTAAGCATGCCACCCCATAG 60.546 57.143 15.66 5.87 0.00 2.23
244 245 1.421268 CTAAGCATGCCACCCCATAGA 59.579 52.381 15.66 0.00 0.00 1.98
245 246 0.630673 AAGCATGCCACCCCATAGAA 59.369 50.000 15.66 0.00 0.00 2.10
246 247 0.106519 AGCATGCCACCCCATAGAAC 60.107 55.000 15.66 0.00 0.00 3.01
254 255 1.140252 CACCCCATAGAACCCGGTTAG 59.860 57.143 1.75 0.00 0.00 2.34
259 260 3.349022 CCATAGAACCCGGTTAGCAAAA 58.651 45.455 1.75 0.00 0.00 2.44
468 495 2.842496 TCATGGAGAGGCAAGACATCTT 59.158 45.455 0.00 0.00 36.45 2.40
511 538 4.098416 GCGATAACTTGTCCAAATTCAGC 58.902 43.478 0.00 0.00 0.00 4.26
512 539 4.379394 GCGATAACTTGTCCAAATTCAGCA 60.379 41.667 0.00 0.00 0.00 4.41
579 606 3.706594 TCTATGAAGAAGAATGCGGAGGT 59.293 43.478 0.00 0.00 0.00 3.85
583 610 2.393271 AGAAGAATGCGGAGGTCTTG 57.607 50.000 9.89 0.00 31.80 3.02
587 614 1.134280 AGAATGCGGAGGTCTTGATGG 60.134 52.381 0.00 0.00 0.00 3.51
590 617 0.614697 TGCGGAGGTCTTGATGGAGA 60.615 55.000 0.00 0.00 0.00 3.71
591 618 0.755686 GCGGAGGTCTTGATGGAGAT 59.244 55.000 0.00 0.00 0.00 2.75
616 643 2.280119 GCCCGCATGCACGAGATA 60.280 61.111 19.57 0.00 34.06 1.98
618 666 1.068083 CCCGCATGCACGAGATACT 59.932 57.895 19.57 0.00 34.06 2.12
623 671 1.871408 GCATGCACGAGATACTGGAGG 60.871 57.143 14.21 0.00 0.00 4.30
629 677 3.821600 GCACGAGATACTGGAGGAGATTA 59.178 47.826 0.00 0.00 0.00 1.75
630 678 4.083003 GCACGAGATACTGGAGGAGATTAG 60.083 50.000 0.00 0.00 0.00 1.73
631 679 4.457603 CACGAGATACTGGAGGAGATTAGG 59.542 50.000 0.00 0.00 0.00 2.69
634 682 5.646215 GAGATACTGGAGGAGATTAGGGAA 58.354 45.833 0.00 0.00 0.00 3.97
637 685 3.922375 ACTGGAGGAGATTAGGGAAGAG 58.078 50.000 0.00 0.00 0.00 2.85
640 688 5.154418 CTGGAGGAGATTAGGGAAGAGAAT 58.846 45.833 0.00 0.00 0.00 2.40
646 694 9.100197 GAGGAGATTAGGGAAGAGAATAAGATT 57.900 37.037 0.00 0.00 0.00 2.40
647 695 9.100197 AGGAGATTAGGGAAGAGAATAAGATTC 57.900 37.037 0.00 0.00 0.00 2.52
648 696 9.100197 GGAGATTAGGGAAGAGAATAAGATTCT 57.900 37.037 1.34 1.34 0.00 2.40
649 697 9.927668 GAGATTAGGGAAGAGAATAAGATTCTG 57.072 37.037 6.44 0.00 0.00 3.02
650 698 9.667607 AGATTAGGGAAGAGAATAAGATTCTGA 57.332 33.333 6.44 0.00 0.00 3.27
718 875 5.469084 CCGAGCAGTACATGTATGAGTACTA 59.531 44.000 9.18 0.00 46.67 1.82
719 876 6.364261 CGAGCAGTACATGTATGAGTACTAC 58.636 44.000 9.18 0.00 46.67 2.73
752 910 1.006519 CTCACCAGGAGGAAGAGGAGA 59.993 57.143 0.00 0.00 40.13 3.71
753 911 1.433199 TCACCAGGAGGAAGAGGAGAA 59.567 52.381 0.00 0.00 38.69 2.87
754 912 1.830477 CACCAGGAGGAAGAGGAGAAG 59.170 57.143 0.00 0.00 38.69 2.85
768 926 1.398692 GAGAAGGAGACGGAGCTGAT 58.601 55.000 0.00 0.00 0.00 2.90
769 927 1.336755 GAGAAGGAGACGGAGCTGATC 59.663 57.143 0.00 0.00 0.00 2.92
835 999 0.103208 CCTACCGTAGCAGCAGGAAG 59.897 60.000 8.37 0.00 0.00 3.46
886 1050 6.241645 AGCCAAGAGTAAGAAAGCATTACTT 58.758 36.000 0.36 0.00 42.17 2.24
887 1051 7.394816 AGCCAAGAGTAAGAAAGCATTACTTA 58.605 34.615 0.36 0.00 42.17 2.24
888 1052 7.334671 AGCCAAGAGTAAGAAAGCATTACTTAC 59.665 37.037 0.00 0.00 42.17 2.34
894 1058 4.928661 AGAAAGCATTACTTACTGTGCG 57.071 40.909 0.00 0.00 42.18 5.34
895 1059 4.315803 AGAAAGCATTACTTACTGTGCGT 58.684 39.130 0.00 0.00 42.18 5.24
994 1196 9.734620 TTGTTTTCTTCTCTTAATCAATGTGTG 57.265 29.630 0.00 0.00 0.00 3.82
1009 1211 7.700022 TCAATGTGTGGATTCATGTTGATTA 57.300 32.000 0.00 0.00 0.00 1.75
1010 1212 8.296211 TCAATGTGTGGATTCATGTTGATTAT 57.704 30.769 0.00 0.00 0.00 1.28
1041 1243 0.665068 TGCTTGATTTGCTTGCTGCG 60.665 50.000 0.00 0.00 46.63 5.18
1068 1270 1.338769 ACGTTGAGCCCCATGTACTTC 60.339 52.381 0.00 0.00 0.00 3.01
1108 1325 1.825191 CTTGATCATGCCACCGGGG 60.825 63.158 6.32 0.00 40.85 5.73
1157 1374 1.092345 GCTGGGATCAAAGGCGACTC 61.092 60.000 0.00 0.00 42.68 3.36
1263 1480 2.507339 AAAATGCCCAACAAGTCACG 57.493 45.000 0.00 0.00 0.00 4.35
1276 1493 4.245660 ACAAGTCACGGAAGATGTATGTG 58.754 43.478 0.00 0.00 0.00 3.21
1283 1500 3.684788 ACGGAAGATGTATGTGTGCTTTC 59.315 43.478 0.00 0.00 0.00 2.62
1374 1596 5.753744 TGATTCGTTCGTTGCAATTAAGTT 58.246 33.333 0.59 0.00 0.00 2.66
1375 1597 5.849081 TGATTCGTTCGTTGCAATTAAGTTC 59.151 36.000 0.59 0.00 0.00 3.01
1385 1607 8.325282 TCGTTGCAATTAAGTTCATATAACGAG 58.675 33.333 0.59 0.00 40.46 4.18
1459 1681 3.384668 TGAGCTTGAGTTTGAAGTCGAG 58.615 45.455 10.28 10.28 41.08 4.04
1640 1862 2.101582 ACTATCTTGAGTGTCCGCATCC 59.898 50.000 0.00 0.00 0.00 3.51
1684 1906 0.916086 AATATGGGGGTCGAGTTGCA 59.084 50.000 0.00 0.00 0.00 4.08
1732 1955 0.548031 TCATGGATGGTCAAGGCTCC 59.452 55.000 0.00 0.00 0.00 4.70
1759 1982 2.408565 GAGGTTACTGATCCCCCATCA 58.591 52.381 0.00 0.00 39.39 3.07
1787 2010 3.002656 AGTTGTGTTGCTTGATTCTCGTG 59.997 43.478 0.00 0.00 0.00 4.35
1790 2013 2.096218 GTGTTGCTTGATTCTCGTGACC 60.096 50.000 0.00 0.00 0.00 4.02
2068 2291 0.171007 CGGCCCATGTTGCAAGTAAG 59.829 55.000 0.00 0.00 0.00 2.34
2186 2409 8.897752 AGAAATAATGCTCATTTTACTCCTCAC 58.102 33.333 0.00 0.00 32.50 3.51
2187 2410 8.579850 AAATAATGCTCATTTTACTCCTCACA 57.420 30.769 0.00 0.00 32.50 3.58
2206 2429 4.274705 TCACAAATGAGTACATTGCACGTT 59.725 37.500 0.00 0.00 44.67 3.99
2212 2435 5.276240 TGAGTACATTGCACGTTATGTTG 57.724 39.130 7.04 0.00 36.46 3.33
2274 2497 1.264749 ACGCCATGCAACCCTCTAGA 61.265 55.000 0.00 0.00 0.00 2.43
2306 2529 2.375146 GTTGAACTTGTCCACCCTTGT 58.625 47.619 0.00 0.00 0.00 3.16
2310 2533 3.288092 GAACTTGTCCACCCTTGTCTTT 58.712 45.455 0.00 0.00 0.00 2.52
2340 2563 8.512956 GTCCATAAATCAATGATCCTCTCAATG 58.487 37.037 0.00 0.00 37.44 2.82
2480 2963 1.931841 CAATCTGCTCCATCGTCACAG 59.068 52.381 0.00 0.00 0.00 3.66
2495 2978 3.664107 GTCACAGTACTCCAAATCTGCA 58.336 45.455 0.00 0.00 0.00 4.41
2510 2993 3.558931 TCTGCATATGTTTCCATCCGT 57.441 42.857 4.29 0.00 32.29 4.69
2601 3085 6.438763 ACTCAGAATTTTCATTGTTCCGAAC 58.561 36.000 4.18 4.18 0.00 3.95
2873 3359 3.721035 TGCACATGTTCCTAGATCATCG 58.279 45.455 0.00 0.00 0.00 3.84
2887 3373 3.259374 AGATCATCGAGTTGACCAACACT 59.741 43.478 14.42 0.00 43.47 3.55
2888 3374 2.754472 TCATCGAGTTGACCAACACTG 58.246 47.619 14.42 4.90 43.47 3.66
2889 3375 2.364002 TCATCGAGTTGACCAACACTGA 59.636 45.455 14.42 9.18 43.47 3.41
2890 3376 2.971660 TCGAGTTGACCAACACTGAA 57.028 45.000 14.42 0.00 43.47 3.02
2891 3377 3.254470 TCGAGTTGACCAACACTGAAA 57.746 42.857 14.42 0.00 43.47 2.69
2892 3378 3.194861 TCGAGTTGACCAACACTGAAAG 58.805 45.455 14.42 0.00 43.47 2.62
2893 3379 3.118920 TCGAGTTGACCAACACTGAAAGA 60.119 43.478 14.42 0.00 43.47 2.52
2894 3380 3.809832 CGAGTTGACCAACACTGAAAGAT 59.190 43.478 14.42 0.00 43.47 2.40
2895 3381 4.084328 CGAGTTGACCAACACTGAAAGATC 60.084 45.833 14.42 0.00 43.47 2.75
2896 3382 3.809832 AGTTGACCAACACTGAAAGATCG 59.190 43.478 14.42 0.00 43.47 3.69
2897 3383 3.469008 TGACCAACACTGAAAGATCGT 57.531 42.857 0.00 0.00 37.43 3.73
2898 3384 3.130633 TGACCAACACTGAAAGATCGTG 58.869 45.455 0.00 0.00 37.43 4.35
2899 3385 2.480419 GACCAACACTGAAAGATCGTGG 59.520 50.000 3.27 0.00 37.43 4.94
2900 3386 2.104111 ACCAACACTGAAAGATCGTGGA 59.896 45.455 0.00 0.00 37.43 4.02
2901 3387 3.244561 ACCAACACTGAAAGATCGTGGAT 60.245 43.478 0.00 0.00 37.43 3.41
2902 3388 3.125829 CCAACACTGAAAGATCGTGGATG 59.874 47.826 3.27 2.24 37.43 3.51
2903 3389 3.685139 ACACTGAAAGATCGTGGATGT 57.315 42.857 3.27 0.00 37.43 3.06
2904 3390 3.589988 ACACTGAAAGATCGTGGATGTC 58.410 45.455 3.27 0.00 37.43 3.06
2905 3391 3.006859 ACACTGAAAGATCGTGGATGTCA 59.993 43.478 3.27 0.00 37.43 3.58
2906 3392 3.369147 CACTGAAAGATCGTGGATGTCAC 59.631 47.826 0.00 0.00 39.31 3.67
2907 3393 2.932614 CTGAAAGATCGTGGATGTCACC 59.067 50.000 0.00 0.00 38.77 4.02
2908 3394 2.567169 TGAAAGATCGTGGATGTCACCT 59.433 45.455 0.00 0.00 43.23 4.00
2909 3395 3.767131 TGAAAGATCGTGGATGTCACCTA 59.233 43.478 0.00 0.00 43.23 3.08
2910 3396 4.142160 TGAAAGATCGTGGATGTCACCTAG 60.142 45.833 0.00 0.00 43.23 3.02
2911 3397 3.298686 AGATCGTGGATGTCACCTAGA 57.701 47.619 0.00 0.00 43.23 2.43
2912 3398 3.218453 AGATCGTGGATGTCACCTAGAG 58.782 50.000 0.00 0.00 43.23 2.43
2913 3399 1.763968 TCGTGGATGTCACCTAGAGG 58.236 55.000 0.00 0.00 43.23 3.69
2914 3400 0.747255 CGTGGATGTCACCTAGAGGG 59.253 60.000 0.00 0.00 43.23 4.30
2915 3401 1.123928 GTGGATGTCACCTAGAGGGG 58.876 60.000 0.00 0.00 40.39 4.79
2916 3402 0.031111 TGGATGTCACCTAGAGGGGG 60.031 60.000 0.00 0.00 39.69 5.40
2933 3419 2.423446 GGGGGTGAATAGGCGTTTAA 57.577 50.000 0.00 0.00 0.00 1.52
2934 3420 2.725637 GGGGGTGAATAGGCGTTTAAA 58.274 47.619 0.00 0.00 0.00 1.52
2935 3421 3.090790 GGGGGTGAATAGGCGTTTAAAA 58.909 45.455 0.00 0.00 0.00 1.52
2936 3422 3.510753 GGGGGTGAATAGGCGTTTAAAAA 59.489 43.478 0.00 0.00 0.00 1.94
2937 3423 4.160814 GGGGGTGAATAGGCGTTTAAAAAT 59.839 41.667 0.00 0.00 0.00 1.82
2938 3424 5.360429 GGGGGTGAATAGGCGTTTAAAAATA 59.640 40.000 0.00 0.00 0.00 1.40
2939 3425 6.127394 GGGGGTGAATAGGCGTTTAAAAATAA 60.127 38.462 0.00 0.00 0.00 1.40
2940 3426 7.418139 GGGGGTGAATAGGCGTTTAAAAATAAT 60.418 37.037 0.00 0.00 0.00 1.28
2941 3427 7.982919 GGGGTGAATAGGCGTTTAAAAATAATT 59.017 33.333 0.00 0.00 0.00 1.40
2963 3449 8.776376 AATTATGGTTTAGGCTTGAACAAATG 57.224 30.769 5.84 0.00 0.00 2.32
2964 3450 3.988819 TGGTTTAGGCTTGAACAAATGC 58.011 40.909 5.84 0.00 0.00 3.56
2965 3451 2.986479 GGTTTAGGCTTGAACAAATGCG 59.014 45.455 5.84 0.00 0.00 4.73
2966 3452 2.986479 GTTTAGGCTTGAACAAATGCGG 59.014 45.455 0.00 0.00 0.00 5.69
2967 3453 2.192664 TAGGCTTGAACAAATGCGGA 57.807 45.000 0.00 0.00 0.00 5.54
2968 3454 1.327303 AGGCTTGAACAAATGCGGAA 58.673 45.000 0.00 0.00 0.00 4.30
2969 3455 1.895131 AGGCTTGAACAAATGCGGAAT 59.105 42.857 0.00 0.00 0.00 3.01
2970 3456 3.088532 AGGCTTGAACAAATGCGGAATA 58.911 40.909 0.00 0.00 0.00 1.75
2971 3457 3.509575 AGGCTTGAACAAATGCGGAATAA 59.490 39.130 0.00 0.00 0.00 1.40
2972 3458 4.021544 AGGCTTGAACAAATGCGGAATAAA 60.022 37.500 0.00 0.00 0.00 1.40
2973 3459 4.091365 GGCTTGAACAAATGCGGAATAAAC 59.909 41.667 0.00 0.00 0.00 2.01
2974 3460 4.091365 GCTTGAACAAATGCGGAATAAACC 59.909 41.667 0.00 0.00 0.00 3.27
2975 3461 5.461032 TTGAACAAATGCGGAATAAACCT 57.539 34.783 0.00 0.00 0.00 3.50
2976 3462 6.576662 TTGAACAAATGCGGAATAAACCTA 57.423 33.333 0.00 0.00 0.00 3.08
2977 3463 6.189677 TGAACAAATGCGGAATAAACCTAG 57.810 37.500 0.00 0.00 0.00 3.02
2978 3464 4.632538 ACAAATGCGGAATAAACCTAGC 57.367 40.909 0.00 0.00 0.00 3.42
2979 3465 3.064820 ACAAATGCGGAATAAACCTAGCG 59.935 43.478 0.00 0.00 0.00 4.26
2980 3466 1.878953 ATGCGGAATAAACCTAGCGG 58.121 50.000 0.00 0.00 0.00 5.52
2994 3480 3.439129 ACCTAGCGGTTAATTTGTCAAGC 59.561 43.478 0.00 0.00 42.13 4.01
2995 3481 3.438781 CCTAGCGGTTAATTTGTCAAGCA 59.561 43.478 0.00 0.00 0.00 3.91
2996 3482 3.282831 AGCGGTTAATTTGTCAAGCAC 57.717 42.857 0.00 0.00 0.00 4.40
2997 3483 2.621055 AGCGGTTAATTTGTCAAGCACA 59.379 40.909 0.00 0.00 0.00 4.57
2998 3484 3.067461 AGCGGTTAATTTGTCAAGCACAA 59.933 39.130 0.00 0.00 43.68 3.33
3009 3495 5.392767 TGTCAAGCACAAAACCTAAAACA 57.607 34.783 0.00 0.00 29.30 2.83
3010 3496 5.784177 TGTCAAGCACAAAACCTAAAACAA 58.216 33.333 0.00 0.00 29.30 2.83
3011 3497 5.635700 TGTCAAGCACAAAACCTAAAACAAC 59.364 36.000 0.00 0.00 29.30 3.32
3012 3498 5.867174 GTCAAGCACAAAACCTAAAACAACT 59.133 36.000 0.00 0.00 0.00 3.16
3013 3499 7.030768 GTCAAGCACAAAACCTAAAACAACTA 58.969 34.615 0.00 0.00 0.00 2.24
3014 3500 7.220108 GTCAAGCACAAAACCTAAAACAACTAG 59.780 37.037 0.00 0.00 0.00 2.57
3015 3501 6.144078 AGCACAAAACCTAAAACAACTAGG 57.856 37.500 0.00 0.00 41.61 3.02
3016 3502 4.743151 GCACAAAACCTAAAACAACTAGGC 59.257 41.667 0.00 0.00 39.78 3.93
3017 3503 5.451381 GCACAAAACCTAAAACAACTAGGCT 60.451 40.000 0.00 0.00 39.78 4.58
3018 3504 6.206498 CACAAAACCTAAAACAACTAGGCTC 58.794 40.000 0.00 0.00 39.78 4.70
3019 3505 5.889289 ACAAAACCTAAAACAACTAGGCTCA 59.111 36.000 0.00 0.00 39.78 4.26
3020 3506 6.183360 ACAAAACCTAAAACAACTAGGCTCAC 60.183 38.462 0.00 0.00 39.78 3.51
3021 3507 4.017177 ACCTAAAACAACTAGGCTCACC 57.983 45.455 0.00 0.00 39.78 4.02
3031 3517 4.225497 GGCTCACCTATGTGCACC 57.775 61.111 15.69 0.00 45.29 5.01
3032 3518 1.299648 GGCTCACCTATGTGCACCA 59.700 57.895 15.69 2.61 45.29 4.17
3033 3519 0.322456 GGCTCACCTATGTGCACCAA 60.322 55.000 15.69 0.65 45.29 3.67
3034 3520 0.804989 GCTCACCTATGTGCACCAAC 59.195 55.000 15.69 0.00 43.41 3.77
3035 3521 1.881925 GCTCACCTATGTGCACCAACA 60.882 52.381 15.69 0.00 43.41 3.33
3036 3522 2.503331 CTCACCTATGTGCACCAACAA 58.497 47.619 15.69 0.00 42.46 2.83
3037 3523 2.226330 TCACCTATGTGCACCAACAAC 58.774 47.619 15.69 0.00 42.46 3.32
3038 3524 2.158682 TCACCTATGTGCACCAACAACT 60.159 45.455 15.69 0.00 42.46 3.16
3039 3525 2.622942 CACCTATGTGCACCAACAACTT 59.377 45.455 15.69 0.00 35.31 2.66
3040 3526 3.818210 CACCTATGTGCACCAACAACTTA 59.182 43.478 15.69 0.00 35.31 2.24
3041 3527 4.458989 CACCTATGTGCACCAACAACTTAT 59.541 41.667 15.69 0.00 35.31 1.73
3042 3528 4.458989 ACCTATGTGCACCAACAACTTATG 59.541 41.667 15.69 0.00 32.81 1.90
3043 3529 2.791383 TGTGCACCAACAACTTATGC 57.209 45.000 15.69 0.00 36.81 3.14
3044 3530 2.305928 TGTGCACCAACAACTTATGCT 58.694 42.857 15.69 0.00 37.20 3.79
3045 3531 3.481453 TGTGCACCAACAACTTATGCTA 58.519 40.909 15.69 0.00 37.20 3.49
3046 3532 3.885901 TGTGCACCAACAACTTATGCTAA 59.114 39.130 15.69 0.00 37.20 3.09
3047 3533 4.023279 TGTGCACCAACAACTTATGCTAAG 60.023 41.667 15.69 2.55 37.20 2.18
3048 3534 3.057596 TGCACCAACAACTTATGCTAAGC 60.058 43.478 0.00 0.00 37.20 3.09
3049 3535 3.057596 GCACCAACAACTTATGCTAAGCA 60.058 43.478 0.00 0.00 44.86 3.91
3050 3536 4.558496 GCACCAACAACTTATGCTAAGCAA 60.558 41.667 0.00 0.00 43.62 3.91
3051 3537 5.713025 CACCAACAACTTATGCTAAGCAAT 58.287 37.500 0.00 0.00 43.62 3.56
3052 3538 6.624861 GCACCAACAACTTATGCTAAGCAATA 60.625 38.462 0.00 0.00 43.62 1.90
3053 3539 7.483307 CACCAACAACTTATGCTAAGCAATAT 58.517 34.615 0.00 0.00 43.62 1.28
3054 3540 8.620416 CACCAACAACTTATGCTAAGCAATATA 58.380 33.333 0.00 0.00 43.62 0.86
3055 3541 9.184523 ACCAACAACTTATGCTAAGCAATATAA 57.815 29.630 0.00 0.00 43.62 0.98
3056 3542 9.669353 CCAACAACTTATGCTAAGCAATATAAG 57.331 33.333 0.00 0.00 43.62 1.73
3057 3543 9.173939 CAACAACTTATGCTAAGCAATATAAGC 57.826 33.333 0.00 0.00 43.62 3.09
3066 3552 7.864686 TGCTAAGCAATATAAGCAACTATGTG 58.135 34.615 3.28 0.00 41.74 3.21
3067 3553 7.714813 TGCTAAGCAATATAAGCAACTATGTGA 59.285 33.333 3.28 0.00 41.74 3.58
3068 3554 8.725148 GCTAAGCAATATAAGCAACTATGTGAT 58.275 33.333 3.28 0.00 35.05 3.06
3071 3557 8.261492 AGCAATATAAGCAACTATGTGATAGC 57.739 34.615 3.28 0.00 36.30 2.97
3072 3558 7.879677 AGCAATATAAGCAACTATGTGATAGCA 59.120 33.333 3.28 0.00 36.30 3.49
3073 3559 8.506437 GCAATATAAGCAACTATGTGATAGCAA 58.494 33.333 0.00 0.00 36.30 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.767759 ACCTTGTTGATGCCCATAGC 58.232 50.000 0.00 0.00 44.14 2.97
19 20 4.384056 CTCTACCTTGTTGATGCCCATAG 58.616 47.826 0.00 0.00 0.00 2.23
20 21 3.136443 CCTCTACCTTGTTGATGCCCATA 59.864 47.826 0.00 0.00 0.00 2.74
21 22 2.092212 CCTCTACCTTGTTGATGCCCAT 60.092 50.000 0.00 0.00 0.00 4.00
22 23 1.281867 CCTCTACCTTGTTGATGCCCA 59.718 52.381 0.00 0.00 0.00 5.36
23 24 1.559682 TCCTCTACCTTGTTGATGCCC 59.440 52.381 0.00 0.00 0.00 5.36
24 25 3.010420 GTTCCTCTACCTTGTTGATGCC 58.990 50.000 0.00 0.00 0.00 4.40
25 26 3.437049 GTGTTCCTCTACCTTGTTGATGC 59.563 47.826 0.00 0.00 0.00 3.91
26 27 4.641396 TGTGTTCCTCTACCTTGTTGATG 58.359 43.478 0.00 0.00 0.00 3.07
27 28 4.974645 TGTGTTCCTCTACCTTGTTGAT 57.025 40.909 0.00 0.00 0.00 2.57
28 29 4.764050 TTGTGTTCCTCTACCTTGTTGA 57.236 40.909 0.00 0.00 0.00 3.18
29 30 5.530915 TGATTTGTGTTCCTCTACCTTGTTG 59.469 40.000 0.00 0.00 0.00 3.33
30 31 5.690865 TGATTTGTGTTCCTCTACCTTGTT 58.309 37.500 0.00 0.00 0.00 2.83
31 32 5.304686 TGATTTGTGTTCCTCTACCTTGT 57.695 39.130 0.00 0.00 0.00 3.16
32 33 4.697352 CCTGATTTGTGTTCCTCTACCTTG 59.303 45.833 0.00 0.00 0.00 3.61
33 34 4.807643 GCCTGATTTGTGTTCCTCTACCTT 60.808 45.833 0.00 0.00 0.00 3.50
34 35 3.307762 GCCTGATTTGTGTTCCTCTACCT 60.308 47.826 0.00 0.00 0.00 3.08
35 36 3.010420 GCCTGATTTGTGTTCCTCTACC 58.990 50.000 0.00 0.00 0.00 3.18
36 37 2.673368 CGCCTGATTTGTGTTCCTCTAC 59.327 50.000 0.00 0.00 0.00 2.59
37 38 2.354704 CCGCCTGATTTGTGTTCCTCTA 60.355 50.000 0.00 0.00 0.00 2.43
38 39 1.611673 CCGCCTGATTTGTGTTCCTCT 60.612 52.381 0.00 0.00 0.00 3.69
39 40 0.804989 CCGCCTGATTTGTGTTCCTC 59.195 55.000 0.00 0.00 0.00 3.71
40 41 1.244019 GCCGCCTGATTTGTGTTCCT 61.244 55.000 0.00 0.00 0.00 3.36
41 42 1.212751 GCCGCCTGATTTGTGTTCC 59.787 57.895 0.00 0.00 0.00 3.62
42 43 0.109597 CTGCCGCCTGATTTGTGTTC 60.110 55.000 0.00 0.00 0.00 3.18
43 44 0.537143 TCTGCCGCCTGATTTGTGTT 60.537 50.000 0.00 0.00 0.00 3.32
44 45 0.957395 CTCTGCCGCCTGATTTGTGT 60.957 55.000 0.00 0.00 0.00 3.72
45 46 1.651240 CCTCTGCCGCCTGATTTGTG 61.651 60.000 0.00 0.00 0.00 3.33
46 47 1.377725 CCTCTGCCGCCTGATTTGT 60.378 57.895 0.00 0.00 0.00 2.83
47 48 2.768492 GCCTCTGCCGCCTGATTTG 61.768 63.158 0.00 0.00 0.00 2.32
48 49 2.439156 GCCTCTGCCGCCTGATTT 60.439 61.111 0.00 0.00 0.00 2.17
49 50 3.720601 TGCCTCTGCCGCCTGATT 61.721 61.111 0.00 0.00 36.33 2.57
50 51 4.479993 GTGCCTCTGCCGCCTGAT 62.480 66.667 0.00 0.00 36.33 2.90
59 60 1.445754 CTCACTCGCAGTGCCTCTG 60.446 63.158 10.11 1.80 45.54 3.35
60 61 2.644212 CCTCACTCGCAGTGCCTCT 61.644 63.158 10.11 0.00 45.54 3.69
61 62 2.125753 CCTCACTCGCAGTGCCTC 60.126 66.667 10.11 0.00 45.54 4.70
62 63 2.210013 TTCCTCACTCGCAGTGCCT 61.210 57.895 10.11 0.00 45.54 4.75
63 64 2.029844 GTTCCTCACTCGCAGTGCC 61.030 63.158 10.11 0.00 45.54 5.01
64 65 0.671781 ATGTTCCTCACTCGCAGTGC 60.672 55.000 4.58 4.58 45.54 4.40
66 67 0.036952 CCATGTTCCTCACTCGCAGT 60.037 55.000 0.00 0.00 0.00 4.40
67 68 0.247460 TCCATGTTCCTCACTCGCAG 59.753 55.000 0.00 0.00 0.00 5.18
68 69 0.904649 ATCCATGTTCCTCACTCGCA 59.095 50.000 0.00 0.00 0.00 5.10
69 70 1.134699 TCATCCATGTTCCTCACTCGC 60.135 52.381 0.00 0.00 0.00 5.03
70 71 2.967599 TCATCCATGTTCCTCACTCG 57.032 50.000 0.00 0.00 0.00 4.18
71 72 4.774124 TCATTCATCCATGTTCCTCACTC 58.226 43.478 0.00 0.00 0.00 3.51
72 73 4.849813 TCATTCATCCATGTTCCTCACT 57.150 40.909 0.00 0.00 0.00 3.41
73 74 4.701651 TGTTCATTCATCCATGTTCCTCAC 59.298 41.667 0.00 0.00 0.00 3.51
74 75 4.920999 TGTTCATTCATCCATGTTCCTCA 58.079 39.130 0.00 0.00 0.00 3.86
75 76 5.591472 TCATGTTCATTCATCCATGTTCCTC 59.409 40.000 0.00 0.00 36.81 3.71
76 77 5.512298 TCATGTTCATTCATCCATGTTCCT 58.488 37.500 0.00 0.00 36.81 3.36
77 78 5.840243 TCATGTTCATTCATCCATGTTCC 57.160 39.130 0.00 0.00 36.81 3.62
78 79 7.277098 CCTTTTCATGTTCATTCATCCATGTTC 59.723 37.037 0.00 0.00 36.81 3.18
79 80 7.038870 TCCTTTTCATGTTCATTCATCCATGTT 60.039 33.333 0.00 0.00 36.81 2.71
80 81 6.438108 TCCTTTTCATGTTCATTCATCCATGT 59.562 34.615 0.00 0.00 36.81 3.21
81 82 6.869695 TCCTTTTCATGTTCATTCATCCATG 58.130 36.000 0.00 0.00 36.80 3.66
82 83 7.484993 TTCCTTTTCATGTTCATTCATCCAT 57.515 32.000 0.00 0.00 0.00 3.41
83 84 6.914654 TTCCTTTTCATGTTCATTCATCCA 57.085 33.333 0.00 0.00 0.00 3.41
84 85 7.381323 ACTTTCCTTTTCATGTTCATTCATCC 58.619 34.615 0.00 0.00 0.00 3.51
85 86 8.822652 AACTTTCCTTTTCATGTTCATTCATC 57.177 30.769 0.00 0.00 0.00 2.92
90 91 9.971922 CTCTTTAACTTTCCTTTTCATGTTCAT 57.028 29.630 0.00 0.00 0.00 2.57
91 92 9.184523 TCTCTTTAACTTTCCTTTTCATGTTCA 57.815 29.630 0.00 0.00 0.00 3.18
92 93 9.452065 GTCTCTTTAACTTTCCTTTTCATGTTC 57.548 33.333 0.00 0.00 0.00 3.18
93 94 8.414003 GGTCTCTTTAACTTTCCTTTTCATGTT 58.586 33.333 0.00 0.00 0.00 2.71
94 95 7.780271 AGGTCTCTTTAACTTTCCTTTTCATGT 59.220 33.333 0.00 0.00 0.00 3.21
95 96 8.078596 CAGGTCTCTTTAACTTTCCTTTTCATG 58.921 37.037 0.00 0.00 0.00 3.07
96 97 7.231519 CCAGGTCTCTTTAACTTTCCTTTTCAT 59.768 37.037 0.00 0.00 0.00 2.57
97 98 6.546034 CCAGGTCTCTTTAACTTTCCTTTTCA 59.454 38.462 0.00 0.00 0.00 2.69
98 99 6.771267 TCCAGGTCTCTTTAACTTTCCTTTTC 59.229 38.462 0.00 0.00 0.00 2.29
99 100 6.669631 TCCAGGTCTCTTTAACTTTCCTTTT 58.330 36.000 0.00 0.00 0.00 2.27
100 101 6.262056 TCCAGGTCTCTTTAACTTTCCTTT 57.738 37.500 0.00 0.00 0.00 3.11
101 102 5.906772 TCCAGGTCTCTTTAACTTTCCTT 57.093 39.130 0.00 0.00 0.00 3.36
102 103 5.221945 CCTTCCAGGTCTCTTTAACTTTCCT 60.222 44.000 0.00 0.00 0.00 3.36
103 104 5.004448 CCTTCCAGGTCTCTTTAACTTTCC 58.996 45.833 0.00 0.00 0.00 3.13
135 136 9.654663 TCCGGTTTTCTCTTTTTCATTTTAAAA 57.345 25.926 0.00 2.51 0.00 1.52
136 137 9.654663 TTCCGGTTTTCTCTTTTTCATTTTAAA 57.345 25.926 0.00 0.00 0.00 1.52
137 138 9.654663 TTTCCGGTTTTCTCTTTTTCATTTTAA 57.345 25.926 0.00 0.00 0.00 1.52
138 139 9.825109 ATTTCCGGTTTTCTCTTTTTCATTTTA 57.175 25.926 0.00 0.00 0.00 1.52
139 140 8.731275 ATTTCCGGTTTTCTCTTTTTCATTTT 57.269 26.923 0.00 0.00 0.00 1.82
140 141 9.476202 CTATTTCCGGTTTTCTCTTTTTCATTT 57.524 29.630 0.00 0.00 0.00 2.32
141 142 8.088365 CCTATTTCCGGTTTTCTCTTTTTCATT 58.912 33.333 0.00 0.00 0.00 2.57
142 143 7.602753 CCTATTTCCGGTTTTCTCTTTTTCAT 58.397 34.615 0.00 0.00 0.00 2.57
143 144 6.516028 GCCTATTTCCGGTTTTCTCTTTTTCA 60.516 38.462 0.00 0.00 0.00 2.69
144 145 5.862323 GCCTATTTCCGGTTTTCTCTTTTTC 59.138 40.000 0.00 0.00 0.00 2.29
145 146 5.303333 TGCCTATTTCCGGTTTTCTCTTTTT 59.697 36.000 0.00 0.00 0.00 1.94
146 147 4.830600 TGCCTATTTCCGGTTTTCTCTTTT 59.169 37.500 0.00 0.00 0.00 2.27
147 148 4.403734 TGCCTATTTCCGGTTTTCTCTTT 58.596 39.130 0.00 0.00 0.00 2.52
148 149 4.028993 TGCCTATTTCCGGTTTTCTCTT 57.971 40.909 0.00 0.00 0.00 2.85
149 150 3.713826 TGCCTATTTCCGGTTTTCTCT 57.286 42.857 0.00 0.00 0.00 3.10
150 151 4.457949 TCTTTGCCTATTTCCGGTTTTCTC 59.542 41.667 0.00 0.00 0.00 2.87
151 152 4.403734 TCTTTGCCTATTTCCGGTTTTCT 58.596 39.130 0.00 0.00 0.00 2.52
152 153 4.776795 TCTTTGCCTATTTCCGGTTTTC 57.223 40.909 0.00 0.00 0.00 2.29
153 154 4.021456 CCTTCTTTGCCTATTTCCGGTTTT 60.021 41.667 0.00 0.00 0.00 2.43
154 155 3.509967 CCTTCTTTGCCTATTTCCGGTTT 59.490 43.478 0.00 0.00 0.00 3.27
155 156 3.089284 CCTTCTTTGCCTATTTCCGGTT 58.911 45.455 0.00 0.00 0.00 4.44
156 157 2.307686 TCCTTCTTTGCCTATTTCCGGT 59.692 45.455 0.00 0.00 0.00 5.28
157 158 2.999331 TCCTTCTTTGCCTATTTCCGG 58.001 47.619 0.00 0.00 0.00 5.14
158 159 4.380550 GGTTTCCTTCTTTGCCTATTTCCG 60.381 45.833 0.00 0.00 0.00 4.30
159 160 4.380550 CGGTTTCCTTCTTTGCCTATTTCC 60.381 45.833 0.00 0.00 0.00 3.13
160 161 4.380550 CCGGTTTCCTTCTTTGCCTATTTC 60.381 45.833 0.00 0.00 0.00 2.17
161 162 3.509967 CCGGTTTCCTTCTTTGCCTATTT 59.490 43.478 0.00 0.00 0.00 1.40
162 163 3.089284 CCGGTTTCCTTCTTTGCCTATT 58.911 45.455 0.00 0.00 0.00 1.73
163 164 2.620627 CCCGGTTTCCTTCTTTGCCTAT 60.621 50.000 0.00 0.00 0.00 2.57
164 165 1.271707 CCCGGTTTCCTTCTTTGCCTA 60.272 52.381 0.00 0.00 0.00 3.93
165 166 0.539669 CCCGGTTTCCTTCTTTGCCT 60.540 55.000 0.00 0.00 0.00 4.75
166 167 0.538746 TCCCGGTTTCCTTCTTTGCC 60.539 55.000 0.00 0.00 0.00 4.52
167 168 1.202348 CATCCCGGTTTCCTTCTTTGC 59.798 52.381 0.00 0.00 0.00 3.68
168 169 1.818674 CCATCCCGGTTTCCTTCTTTG 59.181 52.381 0.00 0.00 0.00 2.77
169 170 1.891011 GCCATCCCGGTTTCCTTCTTT 60.891 52.381 0.00 0.00 36.97 2.52
170 171 0.323451 GCCATCCCGGTTTCCTTCTT 60.323 55.000 0.00 0.00 36.97 2.52
171 172 1.303282 GCCATCCCGGTTTCCTTCT 59.697 57.895 0.00 0.00 36.97 2.85
172 173 1.001393 TGCCATCCCGGTTTCCTTC 60.001 57.895 0.00 0.00 36.97 3.46
173 174 1.304134 GTGCCATCCCGGTTTCCTT 60.304 57.895 0.00 0.00 36.97 3.36
174 175 2.355115 GTGCCATCCCGGTTTCCT 59.645 61.111 0.00 0.00 36.97 3.36
175 176 2.754254 GGTGCCATCCCGGTTTCC 60.754 66.667 0.00 0.00 36.97 3.13
176 177 2.034999 TGGTGCCATCCCGGTTTC 59.965 61.111 0.00 0.00 36.97 2.78
177 178 2.035626 CTGGTGCCATCCCGGTTT 59.964 61.111 0.00 0.00 36.97 3.27
178 179 4.047125 CCTGGTGCCATCCCGGTT 62.047 66.667 0.00 0.00 36.97 4.44
180 181 3.727258 TTCCTGGTGCCATCCCGG 61.727 66.667 0.00 0.00 33.92 5.73
181 182 2.438434 GTTCCTGGTGCCATCCCG 60.438 66.667 0.00 0.00 0.00 5.14
182 183 2.043953 GGTTCCTGGTGCCATCCC 60.044 66.667 0.00 0.00 0.00 3.85
183 184 2.438434 CGGTTCCTGGTGCCATCC 60.438 66.667 9.25 0.00 0.00 3.51
184 185 3.134127 GCGGTTCCTGGTGCCATC 61.134 66.667 9.25 0.00 0.00 3.51
187 188 4.778143 ATCGCGGTTCCTGGTGCC 62.778 66.667 6.13 0.00 0.00 5.01
188 189 3.195698 GATCGCGGTTCCTGGTGC 61.196 66.667 6.13 0.00 0.00 5.01
189 190 0.953471 TTTGATCGCGGTTCCTGGTG 60.953 55.000 6.13 0.00 0.00 4.17
190 191 0.250553 TTTTGATCGCGGTTCCTGGT 60.251 50.000 6.13 0.00 0.00 4.00
191 192 0.878416 TTTTTGATCGCGGTTCCTGG 59.122 50.000 6.13 0.00 0.00 4.45
192 193 1.804151 TCTTTTTGATCGCGGTTCCTG 59.196 47.619 6.13 0.00 0.00 3.86
193 194 2.178912 TCTTTTTGATCGCGGTTCCT 57.821 45.000 6.13 0.00 0.00 3.36
194 195 2.981400 TTCTTTTTGATCGCGGTTCC 57.019 45.000 6.13 0.00 0.00 3.62
195 196 4.915085 TCATTTTCTTTTTGATCGCGGTTC 59.085 37.500 6.13 4.46 0.00 3.62
196 197 4.865776 TCATTTTCTTTTTGATCGCGGTT 58.134 34.783 6.13 0.00 0.00 4.44
197 198 4.497473 TCATTTTCTTTTTGATCGCGGT 57.503 36.364 6.13 0.00 0.00 5.68
198 199 5.820926 TTTCATTTTCTTTTTGATCGCGG 57.179 34.783 6.13 0.00 0.00 6.46
199 200 6.569693 GGTTTTTCATTTTCTTTTTGATCGCG 59.430 34.615 0.00 0.00 0.00 5.87
200 201 7.630026 AGGTTTTTCATTTTCTTTTTGATCGC 58.370 30.769 0.00 0.00 0.00 4.58
204 205 9.442047 TGCTTAGGTTTTTCATTTTCTTTTTGA 57.558 25.926 0.00 0.00 0.00 2.69
207 208 8.344831 GCATGCTTAGGTTTTTCATTTTCTTTT 58.655 29.630 11.37 0.00 0.00 2.27
208 209 7.041167 GGCATGCTTAGGTTTTTCATTTTCTTT 60.041 33.333 18.92 0.00 0.00 2.52
209 210 6.427853 GGCATGCTTAGGTTTTTCATTTTCTT 59.572 34.615 18.92 0.00 0.00 2.52
210 211 5.934043 GGCATGCTTAGGTTTTTCATTTTCT 59.066 36.000 18.92 0.00 0.00 2.52
211 212 5.700373 TGGCATGCTTAGGTTTTTCATTTTC 59.300 36.000 18.92 0.00 0.00 2.29
212 213 5.469760 GTGGCATGCTTAGGTTTTTCATTTT 59.530 36.000 18.92 0.00 0.00 1.82
213 214 4.996758 GTGGCATGCTTAGGTTTTTCATTT 59.003 37.500 18.92 0.00 0.00 2.32
214 215 4.563374 GGTGGCATGCTTAGGTTTTTCATT 60.563 41.667 18.92 0.00 0.00 2.57
215 216 3.055891 GGTGGCATGCTTAGGTTTTTCAT 60.056 43.478 18.92 0.00 0.00 2.57
216 217 2.298729 GGTGGCATGCTTAGGTTTTTCA 59.701 45.455 18.92 0.00 0.00 2.69
217 218 2.353704 GGGTGGCATGCTTAGGTTTTTC 60.354 50.000 18.92 0.00 0.00 2.29
218 219 1.623311 GGGTGGCATGCTTAGGTTTTT 59.377 47.619 18.92 0.00 0.00 1.94
219 220 1.266178 GGGTGGCATGCTTAGGTTTT 58.734 50.000 18.92 0.00 0.00 2.43
220 221 0.614697 GGGGTGGCATGCTTAGGTTT 60.615 55.000 18.92 0.00 0.00 3.27
221 222 1.000359 GGGGTGGCATGCTTAGGTT 60.000 57.895 18.92 0.00 0.00 3.50
222 223 1.583784 ATGGGGTGGCATGCTTAGGT 61.584 55.000 18.92 0.00 0.00 3.08
223 224 0.478072 TATGGGGTGGCATGCTTAGG 59.522 55.000 18.92 0.00 0.00 2.69
224 225 1.421268 TCTATGGGGTGGCATGCTTAG 59.579 52.381 18.92 7.68 0.00 2.18
225 226 1.517238 TCTATGGGGTGGCATGCTTA 58.483 50.000 18.92 4.21 0.00 3.09
226 227 0.630673 TTCTATGGGGTGGCATGCTT 59.369 50.000 18.92 0.00 0.00 3.91
227 228 0.106519 GTTCTATGGGGTGGCATGCT 60.107 55.000 18.92 0.00 0.00 3.79
228 229 1.109323 GGTTCTATGGGGTGGCATGC 61.109 60.000 9.90 9.90 0.00 4.06
229 230 0.468029 GGGTTCTATGGGGTGGCATG 60.468 60.000 0.00 0.00 0.00 4.06
230 231 1.930520 GGGTTCTATGGGGTGGCAT 59.069 57.895 0.00 0.00 0.00 4.40
231 232 2.675242 CGGGTTCTATGGGGTGGCA 61.675 63.158 0.00 0.00 0.00 4.92
232 233 2.192175 CGGGTTCTATGGGGTGGC 59.808 66.667 0.00 0.00 0.00 5.01
233 234 1.568118 AACCGGGTTCTATGGGGTGG 61.568 60.000 6.59 0.00 0.00 4.61
234 235 1.140252 CTAACCGGGTTCTATGGGGTG 59.860 57.143 17.19 0.00 0.00 4.61
235 236 1.503800 CTAACCGGGTTCTATGGGGT 58.496 55.000 17.19 0.00 0.00 4.95
236 237 0.108019 GCTAACCGGGTTCTATGGGG 59.892 60.000 17.19 0.92 0.00 4.96
237 238 0.834612 TGCTAACCGGGTTCTATGGG 59.165 55.000 17.19 2.59 0.00 4.00
238 239 2.702592 TTGCTAACCGGGTTCTATGG 57.297 50.000 17.19 4.29 0.00 2.74
424 451 1.959899 GCACGGTCTGAGATGCGTTG 61.960 60.000 0.00 0.00 0.00 4.10
468 495 3.503363 GCACAGAATTGAGATGTGGTTCA 59.497 43.478 6.67 0.00 43.56 3.18
511 538 2.287103 TCCGATCTCGACGAGTAATGTG 59.713 50.000 23.41 9.49 43.02 3.21
512 539 2.558378 TCCGATCTCGACGAGTAATGT 58.442 47.619 23.41 6.91 43.02 2.71
548 575 5.535753 TTCTTCTTCATAGATGATCGGCA 57.464 39.130 0.00 0.00 35.30 5.69
579 606 2.572290 CAGCATGCATCTCCATCAAGA 58.428 47.619 21.98 0.00 0.00 3.02
609 636 4.507691 CCCTAATCTCCTCCAGTATCTCGT 60.508 50.000 0.00 0.00 0.00 4.18
616 643 3.533907 TCTCTTCCCTAATCTCCTCCAGT 59.466 47.826 0.00 0.00 0.00 4.00
618 666 4.626942 TTCTCTTCCCTAATCTCCTCCA 57.373 45.455 0.00 0.00 0.00 3.86
623 671 9.927668 CAGAATCTTATTCTCTTCCCTAATCTC 57.072 37.037 0.00 0.00 0.00 2.75
629 677 7.930865 CGAAATCAGAATCTTATTCTCTTCCCT 59.069 37.037 0.00 0.00 0.00 4.20
630 678 7.172361 CCGAAATCAGAATCTTATTCTCTTCCC 59.828 40.741 0.00 0.00 0.00 3.97
631 679 7.928706 TCCGAAATCAGAATCTTATTCTCTTCC 59.071 37.037 0.00 0.00 0.00 3.46
634 682 8.093927 GGATCCGAAATCAGAATCTTATTCTCT 58.906 37.037 0.00 0.00 0.00 3.10
637 685 6.401581 GCGGATCCGAAATCAGAATCTTATTC 60.402 42.308 37.64 9.11 42.83 1.75
640 688 4.307432 GCGGATCCGAAATCAGAATCTTA 58.693 43.478 37.64 0.00 42.83 2.10
646 694 0.248907 GTCGCGGATCCGAAATCAGA 60.249 55.000 37.64 20.58 42.83 3.27
647 695 0.527600 TGTCGCGGATCCGAAATCAG 60.528 55.000 37.64 18.76 42.83 2.90
648 696 0.108567 TTGTCGCGGATCCGAAATCA 60.109 50.000 37.64 24.10 42.83 2.57
649 697 0.577269 CTTGTCGCGGATCCGAAATC 59.423 55.000 37.64 21.97 42.83 2.17
650 698 1.429148 GCTTGTCGCGGATCCGAAAT 61.429 55.000 37.64 0.00 42.83 2.17
651 699 2.098233 GCTTGTCGCGGATCCGAAA 61.098 57.895 37.64 20.91 42.83 3.46
652 700 2.508439 GCTTGTCGCGGATCCGAA 60.508 61.111 37.64 21.30 42.83 4.30
653 701 3.449227 AGCTTGTCGCGGATCCGA 61.449 61.111 37.64 15.51 45.59 4.55
718 875 1.451936 GTGAGGGTGAAGCCTGTGT 59.548 57.895 5.63 0.00 37.43 3.72
719 876 1.302832 GGTGAGGGTGAAGCCTGTG 60.303 63.158 5.63 0.00 37.43 3.66
745 903 0.395173 GCTCCGTCTCCTTCTCCTCT 60.395 60.000 0.00 0.00 0.00 3.69
752 910 1.110442 CTGATCAGCTCCGTCTCCTT 58.890 55.000 10.38 0.00 0.00 3.36
753 911 0.257328 TCTGATCAGCTCCGTCTCCT 59.743 55.000 18.36 0.00 0.00 3.69
754 912 1.327303 ATCTGATCAGCTCCGTCTCC 58.673 55.000 18.36 0.00 0.00 3.71
768 926 2.171003 TCTGCTCCTCGACAAATCTGA 58.829 47.619 0.00 0.00 0.00 3.27
769 927 2.662006 TCTGCTCCTCGACAAATCTG 57.338 50.000 0.00 0.00 0.00 2.90
835 999 2.900337 CAGCCCGCCGATAAACCC 60.900 66.667 0.00 0.00 0.00 4.11
886 1050 8.705048 TCAACATATTAATTGTACGCACAGTA 57.295 30.769 0.00 0.00 35.67 2.74
887 1051 7.603963 TCAACATATTAATTGTACGCACAGT 57.396 32.000 0.00 0.00 35.67 3.55
888 1052 7.960195 TGTTCAACATATTAATTGTACGCACAG 59.040 33.333 0.00 0.00 35.67 3.66
889 1053 7.807680 TGTTCAACATATTAATTGTACGCACA 58.192 30.769 0.00 0.00 31.01 4.57
890 1054 8.662369 TTGTTCAACATATTAATTGTACGCAC 57.338 30.769 0.00 0.00 31.01 5.34
891 1055 8.722394 TCTTGTTCAACATATTAATTGTACGCA 58.278 29.630 0.00 0.00 31.01 5.24
923 1109 3.331718 GGAGTACTCCCTAGGTTCCAT 57.668 52.381 28.87 0.00 43.94 3.41
924 1110 2.842645 GGAGTACTCCCTAGGTTCCA 57.157 55.000 28.87 0.00 43.94 3.53
994 1196 7.035840 AGCTGTGAATAATCAACATGAATCC 57.964 36.000 0.00 0.00 37.30 3.01
1068 1270 2.588596 TCTGGCGTGCAGTGTGTG 60.589 61.111 0.00 0.00 0.00 3.82
1108 1325 1.435408 GAGAAGATCCGCAAGCTGGC 61.435 60.000 1.77 1.77 0.00 4.85
1118 1335 2.798853 GCGGTCTTAACGGAGAAGATCC 60.799 54.545 0.00 3.37 45.64 3.36
1131 1348 1.209504 CCTTTGATCCCAGCGGTCTTA 59.790 52.381 0.00 0.00 0.00 2.10
1136 1353 3.204827 CGCCTTTGATCCCAGCGG 61.205 66.667 8.20 0.00 42.93 5.52
1157 1374 3.340814 ACACATAGAGAGGCCACTTTG 57.659 47.619 5.01 9.28 0.00 2.77
1263 1480 3.063997 CCGAAAGCACACATACATCTTCC 59.936 47.826 0.00 0.00 0.00 3.46
1276 1493 2.863401 AAACAGGAAACCGAAAGCAC 57.137 45.000 0.00 0.00 0.00 4.40
1283 1500 2.846193 TGGAGAGAAAACAGGAAACCG 58.154 47.619 0.00 0.00 0.00 4.44
1319 1536 5.858049 CACATGCAACATACGTCAAGAAAAT 59.142 36.000 0.00 0.00 0.00 1.82
1374 1596 2.698274 TCCTGCAAGCCTCGTTATATGA 59.302 45.455 0.00 0.00 0.00 2.15
1375 1597 3.111853 TCCTGCAAGCCTCGTTATATG 57.888 47.619 0.00 0.00 0.00 1.78
1429 1651 3.930634 AACTCAAGCTCAGGCAAAATC 57.069 42.857 0.00 0.00 41.70 2.17
1459 1681 2.290705 TGTTCTGCCCTTAACCCTTAGC 60.291 50.000 0.00 0.00 0.00 3.09
1597 1819 4.686091 GTGGCCTGAACTGAATTTTTAAGC 59.314 41.667 3.32 0.00 0.00 3.09
1721 1943 1.376037 CCAGAACGGAGCCTTGACC 60.376 63.158 0.00 0.00 36.56 4.02
1732 1955 2.159085 GGGATCAGTAACCTCCAGAACG 60.159 54.545 0.00 0.00 0.00 3.95
1790 2013 0.179129 GGCATTTCTCCACCATTGCG 60.179 55.000 0.00 0.00 0.00 4.85
1845 2068 7.956420 TGTCGTAATTCTACAGAAACAACAT 57.044 32.000 0.00 0.00 37.61 2.71
1897 2120 7.606456 TGTATGACAACTTTGAAGGTATCTTCC 59.394 37.037 13.22 0.00 46.61 3.46
1903 2126 5.472137 GGCTTGTATGACAACTTTGAAGGTA 59.528 40.000 0.00 0.00 33.96 3.08
2068 2291 1.808411 TCACGCCTCAAAGGAACATC 58.192 50.000 0.00 0.00 37.67 3.06
2161 2384 8.677300 TGTGAGGAGTAAAATGAGCATTATTTC 58.323 33.333 0.00 0.00 0.00 2.17
2183 2406 3.812609 ACGTGCAATGTACTCATTTGTGA 59.187 39.130 0.00 0.00 41.66 3.58
2186 2409 6.314018 ACATAACGTGCAATGTACTCATTTG 58.686 36.000 9.08 0.00 41.66 2.32
2187 2410 6.494893 ACATAACGTGCAATGTACTCATTT 57.505 33.333 9.08 0.00 41.66 2.32
2212 2435 3.520569 ACTTGCATTTGTGTTGTGGTTC 58.479 40.909 0.00 0.00 0.00 3.62
2274 2497 4.962155 ACAAGTTCAACGGAGAAGAGAAT 58.038 39.130 0.00 0.00 0.00 2.40
2310 2533 8.827832 AGAGGATCATTGATTTATGGACAAAA 57.172 30.769 0.00 0.00 37.82 2.44
2340 2563 1.340017 TGCAGAGTCAAGGGGCATTAC 60.340 52.381 0.00 0.00 0.00 1.89
2343 2566 0.395311 CATGCAGAGTCAAGGGGCAT 60.395 55.000 0.00 0.00 45.33 4.40
2480 2963 6.318648 TGGAAACATATGCAGATTTGGAGTAC 59.681 38.462 1.58 0.00 33.40 2.73
2531 3015 7.118390 ACGACAAATTGATAGACTTGGAGAAAG 59.882 37.037 0.00 0.00 42.07 2.62
2533 3017 6.464222 ACGACAAATTGATAGACTTGGAGAA 58.536 36.000 0.00 0.00 0.00 2.87
2534 3018 6.037786 ACGACAAATTGATAGACTTGGAGA 57.962 37.500 0.00 0.00 0.00 3.71
2545 3029 6.385649 ACAAACTTGGTACGACAAATTGAT 57.614 33.333 0.00 0.00 34.22 2.57
2601 3085 2.152016 GAACTCCAAAAACCCTCCTCG 58.848 52.381 0.00 0.00 0.00 4.63
2700 3184 8.882415 AATAACTTACCATGTGTAGGTATTCG 57.118 34.615 8.72 0.00 38.68 3.34
2708 3192 9.733556 ACTCAATTGAATAACTTACCATGTGTA 57.266 29.630 9.88 0.00 0.00 2.90
2873 3359 4.084328 CGATCTTTCAGTGTTGGTCAACTC 60.084 45.833 13.96 10.69 41.67 3.01
2887 3373 2.567169 AGGTGACATCCACGATCTTTCA 59.433 45.455 0.00 0.00 46.62 2.69
2888 3374 3.252974 AGGTGACATCCACGATCTTTC 57.747 47.619 0.00 0.00 46.62 2.62
2889 3375 4.023980 TCTAGGTGACATCCACGATCTTT 58.976 43.478 0.00 0.00 46.62 2.52
2890 3376 3.632333 TCTAGGTGACATCCACGATCTT 58.368 45.455 0.00 0.00 46.62 2.40
2891 3377 3.218453 CTCTAGGTGACATCCACGATCT 58.782 50.000 0.00 0.00 46.62 2.75
2892 3378 2.294791 CCTCTAGGTGACATCCACGATC 59.705 54.545 0.00 0.00 46.62 3.69
2893 3379 2.311463 CCTCTAGGTGACATCCACGAT 58.689 52.381 0.00 0.00 46.62 3.73
2894 3380 1.685180 CCCTCTAGGTGACATCCACGA 60.685 57.143 0.00 0.00 46.62 4.35
2895 3381 0.747255 CCCTCTAGGTGACATCCACG 59.253 60.000 0.00 0.00 46.62 4.94
2896 3382 1.123928 CCCCTCTAGGTGACATCCAC 58.876 60.000 0.00 0.00 44.95 4.02
2897 3383 0.031111 CCCCCTCTAGGTGACATCCA 60.031 60.000 0.00 0.00 0.00 3.41
2898 3384 2.841595 CCCCCTCTAGGTGACATCC 58.158 63.158 0.00 0.00 0.00 3.51
2914 3400 2.423446 TTAAACGCCTATTCACCCCC 57.577 50.000 0.00 0.00 0.00 5.40
2915 3401 4.787260 TTTTTAAACGCCTATTCACCCC 57.213 40.909 0.00 0.00 0.00 4.95
2916 3402 8.936070 AATTATTTTTAAACGCCTATTCACCC 57.064 30.769 0.00 0.00 0.00 4.61
2937 3423 9.868277 CATTTGTTCAAGCCTAAACCATAATTA 57.132 29.630 0.00 0.00 0.00 1.40
2938 3424 7.334171 GCATTTGTTCAAGCCTAAACCATAATT 59.666 33.333 0.00 0.00 0.00 1.40
2939 3425 6.818142 GCATTTGTTCAAGCCTAAACCATAAT 59.182 34.615 0.00 0.00 0.00 1.28
2940 3426 6.162777 GCATTTGTTCAAGCCTAAACCATAA 58.837 36.000 0.00 0.00 0.00 1.90
2941 3427 5.621104 CGCATTTGTTCAAGCCTAAACCATA 60.621 40.000 0.00 0.00 0.00 2.74
2942 3428 4.568956 GCATTTGTTCAAGCCTAAACCAT 58.431 39.130 0.00 0.00 0.00 3.55
2943 3429 3.551863 CGCATTTGTTCAAGCCTAAACCA 60.552 43.478 0.00 0.00 0.00 3.67
2944 3430 2.986479 CGCATTTGTTCAAGCCTAAACC 59.014 45.455 0.00 0.00 0.00 3.27
2945 3431 2.986479 CCGCATTTGTTCAAGCCTAAAC 59.014 45.455 0.00 0.00 0.00 2.01
2946 3432 2.887783 TCCGCATTTGTTCAAGCCTAAA 59.112 40.909 0.00 0.00 0.00 1.85
2947 3433 2.509569 TCCGCATTTGTTCAAGCCTAA 58.490 42.857 0.00 0.00 0.00 2.69
2948 3434 2.192664 TCCGCATTTGTTCAAGCCTA 57.807 45.000 0.00 0.00 0.00 3.93
2949 3435 1.327303 TTCCGCATTTGTTCAAGCCT 58.673 45.000 0.00 0.00 0.00 4.58
2950 3436 2.368655 ATTCCGCATTTGTTCAAGCC 57.631 45.000 0.00 0.00 0.00 4.35
2951 3437 4.091365 GGTTTATTCCGCATTTGTTCAAGC 59.909 41.667 0.00 0.00 0.00 4.01
2952 3438 5.469479 AGGTTTATTCCGCATTTGTTCAAG 58.531 37.500 0.00 0.00 0.00 3.02
2953 3439 5.461032 AGGTTTATTCCGCATTTGTTCAA 57.539 34.783 0.00 0.00 0.00 2.69
2954 3440 5.392595 GCTAGGTTTATTCCGCATTTGTTCA 60.393 40.000 0.00 0.00 0.00 3.18
2955 3441 5.034797 GCTAGGTTTATTCCGCATTTGTTC 58.965 41.667 0.00 0.00 0.00 3.18
2956 3442 4.438200 CGCTAGGTTTATTCCGCATTTGTT 60.438 41.667 0.00 0.00 0.00 2.83
2957 3443 3.064820 CGCTAGGTTTATTCCGCATTTGT 59.935 43.478 0.00 0.00 0.00 2.83
2958 3444 3.548014 CCGCTAGGTTTATTCCGCATTTG 60.548 47.826 0.00 0.00 0.00 2.32
2959 3445 2.616842 CCGCTAGGTTTATTCCGCATTT 59.383 45.455 0.00 0.00 0.00 2.32
2960 3446 2.218603 CCGCTAGGTTTATTCCGCATT 58.781 47.619 0.00 0.00 0.00 3.56
2961 3447 1.878953 CCGCTAGGTTTATTCCGCAT 58.121 50.000 0.00 0.00 0.00 4.73
2962 3448 3.372795 CCGCTAGGTTTATTCCGCA 57.627 52.632 0.00 0.00 0.00 5.69
2973 3459 3.438781 TGCTTGACAAATTAACCGCTAGG 59.561 43.478 0.00 0.00 45.13 3.02
2974 3460 4.083537 TGTGCTTGACAAATTAACCGCTAG 60.084 41.667 0.00 0.00 0.00 3.42
2975 3461 3.815962 TGTGCTTGACAAATTAACCGCTA 59.184 39.130 0.00 0.00 0.00 4.26
2976 3462 2.621055 TGTGCTTGACAAATTAACCGCT 59.379 40.909 0.00 0.00 0.00 5.52
2977 3463 3.006659 TGTGCTTGACAAATTAACCGC 57.993 42.857 0.00 0.00 0.00 5.68
2986 3472 5.784177 TGTTTTAGGTTTTGTGCTTGACAA 58.216 33.333 0.00 0.00 43.11 3.18
2987 3473 5.392767 TGTTTTAGGTTTTGTGCTTGACA 57.607 34.783 0.00 0.00 0.00 3.58
2988 3474 5.867174 AGTTGTTTTAGGTTTTGTGCTTGAC 59.133 36.000 0.00 0.00 0.00 3.18
2989 3475 6.031751 AGTTGTTTTAGGTTTTGTGCTTGA 57.968 33.333 0.00 0.00 0.00 3.02
2990 3476 6.475402 CCTAGTTGTTTTAGGTTTTGTGCTTG 59.525 38.462 0.00 0.00 34.27 4.01
2991 3477 6.569780 CCTAGTTGTTTTAGGTTTTGTGCTT 58.430 36.000 0.00 0.00 34.27 3.91
2992 3478 5.451381 GCCTAGTTGTTTTAGGTTTTGTGCT 60.451 40.000 0.77 0.00 39.91 4.40
2993 3479 4.743151 GCCTAGTTGTTTTAGGTTTTGTGC 59.257 41.667 0.77 0.00 39.91 4.57
2994 3480 6.144078 AGCCTAGTTGTTTTAGGTTTTGTG 57.856 37.500 0.77 0.00 39.91 3.33
2995 3481 5.889289 TGAGCCTAGTTGTTTTAGGTTTTGT 59.111 36.000 0.77 0.00 39.91 2.83
2996 3482 6.206498 GTGAGCCTAGTTGTTTTAGGTTTTG 58.794 40.000 0.77 0.00 39.91 2.44
2997 3483 5.301045 GGTGAGCCTAGTTGTTTTAGGTTTT 59.699 40.000 0.77 0.00 39.91 2.43
2998 3484 4.825634 GGTGAGCCTAGTTGTTTTAGGTTT 59.174 41.667 0.77 0.00 39.91 3.27
2999 3485 4.104261 AGGTGAGCCTAGTTGTTTTAGGTT 59.896 41.667 0.77 0.00 44.90 3.50
3000 3486 3.651423 AGGTGAGCCTAGTTGTTTTAGGT 59.349 43.478 0.77 0.00 44.90 3.08
3001 3487 4.287766 AGGTGAGCCTAGTTGTTTTAGG 57.712 45.455 0.00 0.00 44.90 2.69
3019 3505 2.656947 AGTTGTTGGTGCACATAGGT 57.343 45.000 20.43 0.00 0.00 3.08
3020 3506 4.675146 GCATAAGTTGTTGGTGCACATAGG 60.675 45.833 20.43 1.52 35.93 2.57
3021 3507 4.156556 AGCATAAGTTGTTGGTGCACATAG 59.843 41.667 20.43 0.00 38.23 2.23
3022 3508 4.078537 AGCATAAGTTGTTGGTGCACATA 58.921 39.130 20.43 3.77 38.23 2.29
3023 3509 2.892852 AGCATAAGTTGTTGGTGCACAT 59.107 40.909 20.43 0.00 38.23 3.21
3024 3510 2.305928 AGCATAAGTTGTTGGTGCACA 58.694 42.857 20.43 1.62 38.23 4.57
3025 3511 4.475944 CTTAGCATAAGTTGTTGGTGCAC 58.524 43.478 8.80 8.80 38.23 4.57
3026 3512 3.057596 GCTTAGCATAAGTTGTTGGTGCA 60.058 43.478 0.00 0.00 38.23 4.57
3027 3513 3.057596 TGCTTAGCATAAGTTGTTGGTGC 60.058 43.478 1.39 0.00 31.71 5.01
3028 3514 4.764679 TGCTTAGCATAAGTTGTTGGTG 57.235 40.909 1.39 0.00 31.71 4.17
3029 3515 5.982890 ATTGCTTAGCATAAGTTGTTGGT 57.017 34.783 8.05 0.00 38.76 3.67
3030 3516 9.669353 CTTATATTGCTTAGCATAAGTTGTTGG 57.331 33.333 8.05 0.00 38.76 3.77
3031 3517 9.173939 GCTTATATTGCTTAGCATAAGTTGTTG 57.826 33.333 20.34 5.16 38.76 3.33
3032 3518 8.902806 TGCTTATATTGCTTAGCATAAGTTGTT 58.097 29.630 20.34 1.82 38.61 2.83
3033 3519 8.450578 TGCTTATATTGCTTAGCATAAGTTGT 57.549 30.769 20.34 3.96 38.61 3.32
3034 3520 9.173939 GTTGCTTATATTGCTTAGCATAAGTTG 57.826 33.333 20.34 8.42 42.60 3.16
3035 3521 9.125026 AGTTGCTTATATTGCTTAGCATAAGTT 57.875 29.630 20.34 7.69 42.60 2.66
3036 3522 8.682936 AGTTGCTTATATTGCTTAGCATAAGT 57.317 30.769 20.34 7.29 42.60 2.24
3039 3525 9.725019 ACATAGTTGCTTATATTGCTTAGCATA 57.275 29.630 8.05 3.36 42.60 3.14
3040 3526 8.509690 CACATAGTTGCTTATATTGCTTAGCAT 58.490 33.333 8.05 0.97 42.60 3.79
3041 3527 7.714813 TCACATAGTTGCTTATATTGCTTAGCA 59.285 33.333 1.39 1.39 41.51 3.49
3042 3528 8.087982 TCACATAGTTGCTTATATTGCTTAGC 57.912 34.615 0.00 0.00 0.00 3.09
3045 3531 8.725148 GCTATCACATAGTTGCTTATATTGCTT 58.275 33.333 2.81 0.00 35.29 3.91
3046 3532 7.879677 TGCTATCACATAGTTGCTTATATTGCT 59.120 33.333 2.81 0.00 35.29 3.91
3047 3533 8.032952 TGCTATCACATAGTTGCTTATATTGC 57.967 34.615 0.00 0.00 35.29 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.