Multiple sequence alignment - TraesCS5B01G049700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G049700 chr5B 100.000 7046 0 0 1 7046 55267889 55274934 0.000000e+00 13012.0
1 TraesCS5B01G049700 chr5B 98.984 3346 33 1 2051 5395 224609308 224612653 0.000000e+00 5989.0
2 TraesCS5B01G049700 chr5B 98.984 3346 33 1 2051 5395 519242713 519246058 0.000000e+00 5989.0
3 TraesCS5B01G049700 chr5B 98.202 445 7 1 6104 6548 418324613 418324170 0.000000e+00 776.0
4 TraesCS5B01G049700 chr5B 97.982 446 7 2 6104 6548 418322482 418322038 0.000000e+00 773.0
5 TraesCS5B01G049700 chr5B 97.753 445 9 1 6104 6548 418319291 418318848 0.000000e+00 765.0
6 TraesCS5B01G049700 chr5B 91.935 62 5 0 1295 1356 339291164 339291103 3.500000e-13 87.9
7 TraesCS5B01G049700 chr2A 99.163 3346 28 0 2050 5395 762878224 762874879 0.000000e+00 6024.0
8 TraesCS5B01G049700 chr2A 99.043 3345 30 1 2051 5395 111466326 111462984 0.000000e+00 5999.0
9 TraesCS5B01G049700 chr2A 99.043 3345 30 2 2051 5395 456645949 456649291 0.000000e+00 5999.0
10 TraesCS5B01G049700 chr2A 98.402 438 4 3 6111 6547 37947475 37947040 0.000000e+00 767.0
11 TraesCS5B01G049700 chr2A 98.182 440 6 2 6106 6544 142182406 142181968 0.000000e+00 767.0
12 TraesCS5B01G049700 chr2A 98.540 411 3 3 5393 5801 456650874 456651283 0.000000e+00 723.0
13 TraesCS5B01G049700 chr2A 99.000 400 3 1 5393 5792 499572319 499571921 0.000000e+00 715.0
14 TraesCS5B01G049700 chr2B 99.044 3346 29 1 2050 5395 244497902 244494560 0.000000e+00 5999.0
15 TraesCS5B01G049700 chr2B 98.174 438 8 0 6105 6542 141727754 141728191 0.000000e+00 765.0
16 TraesCS5B01G049700 chr7B 99.014 3346 32 1 2051 5395 741255336 741258681 0.000000e+00 5995.0
17 TraesCS5B01G049700 chr7B 96.000 50 1 1 6009 6058 715543268 715543316 5.860000e-11 80.5
18 TraesCS5B01G049700 chr6B 98.984 3346 33 1 2051 5395 664519733 664516388 0.000000e+00 5989.0
19 TraesCS5B01G049700 chr6B 95.238 63 3 0 1295 1357 504603154 504603092 4.500000e-17 100.0
20 TraesCS5B01G049700 chr6A 98.782 3366 38 3 2032 5395 574403122 574406486 0.000000e+00 5986.0
21 TraesCS5B01G049700 chr6A 91.803 61 3 1 1295 1353 104308552 104308492 4.530000e-12 84.2
22 TraesCS5B01G049700 chr6A 89.552 67 3 1 1295 1357 509276956 509277022 1.630000e-11 82.4
23 TraesCS5B01G049700 chr5D 92.360 1924 78 22 14 1911 52246336 52248216 0.000000e+00 2675.0
24 TraesCS5B01G049700 chr5D 94.595 259 13 1 5787 6045 52248249 52248506 3.960000e-107 399.0
25 TraesCS5B01G049700 chr5A 89.801 1304 97 22 1 1293 41336237 41337515 0.000000e+00 1639.0
26 TraesCS5B01G049700 chr5A 98.997 399 4 0 5393 5791 118396033 118396431 0.000000e+00 715.0
27 TraesCS5B01G049700 chr5A 90.086 464 20 8 1465 1911 41341848 41342302 4.740000e-161 579.0
28 TraesCS5B01G049700 chr5A 87.234 376 19 8 1548 1911 41337700 41338058 1.100000e-107 401.0
29 TraesCS5B01G049700 chr5A 95.794 214 9 0 1080 1293 41340458 41340671 5.230000e-91 346.0
30 TraesCS5B01G049700 chr5A 85.000 340 35 6 968 1293 41341439 41341776 1.460000e-86 331.0
31 TraesCS5B01G049700 chr5A 95.000 160 7 1 1363 1521 41337545 41337704 4.220000e-62 250.0
32 TraesCS5B01G049700 chr5A 80.695 259 29 7 667 914 41340197 41340445 1.560000e-41 182.0
33 TraesCS5B01G049700 chr5A 90.698 129 6 4 5889 6013 41343993 41344119 4.370000e-37 167.0
34 TraesCS5B01G049700 chr5A 87.013 77 4 2 1295 1365 447544566 447544490 1.630000e-11 82.4
35 TraesCS5B01G049700 chr7A 98.402 438 7 0 6105 6542 722376389 722375952 0.000000e+00 771.0
36 TraesCS5B01G049700 chr7A 99.494 395 2 0 5393 5787 317173785 317174179 0.000000e+00 719.0
37 TraesCS5B01G049700 chrUn 97.753 445 9 1 6104 6548 357738687 357739130 0.000000e+00 765.0
38 TraesCS5B01G049700 chrUn 97.872 47 0 1 6012 6058 336906437 336906392 5.860000e-11 80.5
39 TraesCS5B01G049700 chrUn 97.872 47 0 1 6012 6058 336908069 336908024 5.860000e-11 80.5
40 TraesCS5B01G049700 chrUn 97.872 47 0 1 6012 6058 336908613 336908568 5.860000e-11 80.5
41 TraesCS5B01G049700 chrUn 97.872 47 0 1 6012 6058 343556168 343556213 5.860000e-11 80.5
42 TraesCS5B01G049700 chrUn 97.872 47 0 1 6012 6058 361682635 361682680 5.860000e-11 80.5
43 TraesCS5B01G049700 chrUn 95.455 44 2 0 1291 1334 26701821 26701864 3.530000e-08 71.3
44 TraesCS5B01G049700 chrUn 97.500 40 1 0 1295 1334 37028994 37028955 1.270000e-07 69.4
45 TraesCS5B01G049700 chrUn 97.500 40 1 0 1295 1334 37403243 37403282 1.270000e-07 69.4
46 TraesCS5B01G049700 chrUn 97.500 40 1 0 1295 1334 103121689 103121728 1.270000e-07 69.4
47 TraesCS5B01G049700 chrUn 97.436 39 1 0 1295 1333 122074082 122074120 4.560000e-07 67.6
48 TraesCS5B01G049700 chrUn 100.000 35 0 0 1295 1329 15903393 15903359 1.640000e-06 65.8
49 TraesCS5B01G049700 chrUn 100.000 35 0 0 1295 1329 30123189 30123155 1.640000e-06 65.8
50 TraesCS5B01G049700 chrUn 100.000 35 0 0 1295 1329 348315111 348315145 1.640000e-06 65.8
51 TraesCS5B01G049700 chrUn 100.000 35 0 0 1295 1329 377707853 377707887 1.640000e-06 65.8
52 TraesCS5B01G049700 chrUn 95.000 40 2 0 1295 1334 35299454 35299493 5.900000e-06 63.9
53 TraesCS5B01G049700 chrUn 95.000 40 2 0 1295 1334 83668103 83668064 5.900000e-06 63.9
54 TraesCS5B01G049700 chrUn 95.000 40 2 0 1295 1334 104889320 104889281 5.900000e-06 63.9
55 TraesCS5B01G049700 chrUn 95.000 40 2 0 1295 1334 229349294 229349333 5.900000e-06 63.9
56 TraesCS5B01G049700 chrUn 93.023 43 3 0 1295 1337 287061826 287061784 5.900000e-06 63.9
57 TraesCS5B01G049700 chrUn 86.207 58 6 2 1280 1336 41888213 41888157 2.120000e-05 62.1
58 TraesCS5B01G049700 chrUn 88.000 50 5 1 1285 1334 111025292 111025340 2.750000e-04 58.4
59 TraesCS5B01G049700 chr1A 97.748 444 7 3 6105 6547 22984387 22983946 0.000000e+00 761.0
60 TraesCS5B01G049700 chr1A 90.164 61 3 2 1295 1352 399497077 399497137 7.580000e-10 76.8
61 TraesCS5B01G049700 chr1B 99.749 398 1 0 5393 5790 51091238 51090841 0.000000e+00 730.0
62 TraesCS5B01G049700 chr1B 99.248 399 3 0 5393 5791 35676940 35677338 0.000000e+00 721.0
63 TraesCS5B01G049700 chr1B 87.143 70 4 2 1289 1353 129174936 129175005 2.730000e-09 75.0
64 TraesCS5B01G049700 chr4B 99.494 395 2 0 5393 5787 661635832 661635438 0.000000e+00 719.0
65 TraesCS5B01G049700 chr4B 99.000 400 4 0 5393 5792 172737663 172737264 0.000000e+00 717.0
66 TraesCS5B01G049700 chr4B 98.759 403 4 1 5393 5795 603040508 603040107 0.000000e+00 715.0
67 TraesCS5B01G049700 chr4B 91.525 59 5 0 1295 1353 74337651 74337709 1.630000e-11 82.4
68 TraesCS5B01G049700 chr4A 96.610 59 2 0 1295 1353 741472555 741472613 1.620000e-16 99.0
69 TraesCS5B01G049700 chr6D 93.548 62 4 0 1295 1356 317011516 317011455 7.530000e-15 93.5
70 TraesCS5B01G049700 chr6D 91.803 61 3 1 1295 1353 86643299 86643239 4.530000e-12 84.2
71 TraesCS5B01G049700 chr6D 88.060 67 3 2 1295 1357 318806542 318806607 2.730000e-09 75.0
72 TraesCS5B01G049700 chr6D 97.619 42 1 0 1295 1336 144858168 144858127 9.800000e-09 73.1
73 TraesCS5B01G049700 chr6D 95.455 44 2 0 1295 1338 196357992 196357949 3.530000e-08 71.3
74 TraesCS5B01G049700 chr6D 83.582 67 7 3 1291 1353 406205751 406205685 7.630000e-05 60.2
75 TraesCS5B01G049700 chr1D 95.000 60 2 1 1295 1353 404066319 404066378 7.530000e-15 93.5
76 TraesCS5B01G049700 chr1D 87.692 65 3 2 1297 1356 15516950 15516886 3.530000e-08 71.3
77 TraesCS5B01G049700 chr1D 87.097 62 7 1 1295 1356 363509570 363509510 1.270000e-07 69.4
78 TraesCS5B01G049700 chr4D 97.872 47 1 0 6012 6058 337933202 337933248 1.630000e-11 82.4
79 TraesCS5B01G049700 chr4D 97.727 44 1 0 1291 1334 99662494 99662451 7.580000e-10 76.8
80 TraesCS5B01G049700 chr4D 100.000 40 0 0 1295 1334 29408000 29408039 2.730000e-09 75.0
81 TraesCS5B01G049700 chr4D 100.000 40 0 0 1295 1334 252173705 252173744 2.730000e-09 75.0
82 TraesCS5B01G049700 chr4D 95.556 45 2 0 1295 1339 402528004 402527960 9.800000e-09 73.1
83 TraesCS5B01G049700 chr4D 89.831 59 0 4 1295 1353 120832565 120832617 3.530000e-08 71.3
84 TraesCS5B01G049700 chr7D 91.525 59 2 3 1295 1353 13311008 13311063 2.110000e-10 78.7
85 TraesCS5B01G049700 chr3D 89.831 59 4 2 6001 6058 13834256 13834313 2.730000e-09 75.0
86 TraesCS5B01G049700 chr3D 88.710 62 4 2 1292 1353 384662820 384662878 9.800000e-09 73.1
87 TraesCS5B01G049700 chr3D 92.157 51 4 0 1287 1337 415978593 415978543 9.800000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G049700 chr5B 55267889 55274934 7045 False 13012.000000 13012 100.0000 1 7046 1 chr5B.!!$F1 7045
1 TraesCS5B01G049700 chr5B 224609308 224612653 3345 False 5989.000000 5989 98.9840 2051 5395 1 chr5B.!!$F2 3344
2 TraesCS5B01G049700 chr5B 519242713 519246058 3345 False 5989.000000 5989 98.9840 2051 5395 1 chr5B.!!$F3 3344
3 TraesCS5B01G049700 chr5B 418318848 418324613 5765 True 771.333333 776 97.9790 6104 6548 3 chr5B.!!$R2 444
4 TraesCS5B01G049700 chr2A 762874879 762878224 3345 True 6024.000000 6024 99.1630 2050 5395 1 chr2A.!!$R5 3345
5 TraesCS5B01G049700 chr2A 111462984 111466326 3342 True 5999.000000 5999 99.0430 2051 5395 1 chr2A.!!$R2 3344
6 TraesCS5B01G049700 chr2A 456645949 456651283 5334 False 3361.000000 5999 98.7915 2051 5801 2 chr2A.!!$F1 3750
7 TraesCS5B01G049700 chr2B 244494560 244497902 3342 True 5999.000000 5999 99.0440 2050 5395 1 chr2B.!!$R1 3345
8 TraesCS5B01G049700 chr7B 741255336 741258681 3345 False 5995.000000 5995 99.0140 2051 5395 1 chr7B.!!$F2 3344
9 TraesCS5B01G049700 chr6B 664516388 664519733 3345 True 5989.000000 5989 98.9840 2051 5395 1 chr6B.!!$R2 3344
10 TraesCS5B01G049700 chr6A 574403122 574406486 3364 False 5986.000000 5986 98.7820 2032 5395 1 chr6A.!!$F2 3363
11 TraesCS5B01G049700 chr5D 52246336 52248506 2170 False 1537.000000 2675 93.4775 14 6045 2 chr5D.!!$F1 6031
12 TraesCS5B01G049700 chr5A 41336237 41344119 7882 False 486.875000 1639 89.2885 1 6013 8 chr5A.!!$F2 6012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1002 0.673644 CCAGGTCACCATGGTTCGTC 60.674 60.000 16.84 5.40 0.00 4.20 F
2000 6241 0.674581 GTAGCATGCTGTCTGGTGCA 60.675 55.000 30.42 3.38 43.67 4.57 F
2941 7182 1.228124 CGACATGGGTGTGGTGGTT 60.228 57.895 0.00 0.00 39.09 3.67 F
3708 7950 0.322366 TCTCGCCAATGTGGAATGCA 60.322 50.000 0.00 0.00 40.96 3.96 F
5859 11694 1.069636 CGCTTGCAGGTTTCTTCTGAC 60.070 52.381 0.00 0.00 34.36 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2941 7182 0.032403 GCATGCTGAAGTGCAAACCA 59.968 50.000 11.37 0.0 46.61 3.67 R
3042 7283 5.048846 TCTTGGGAAGCTTCACTACTTTT 57.951 39.130 28.18 0.0 0.00 2.27 R
4923 9165 4.141914 ACCTCAACTCTTTCTTTCAGTCGT 60.142 41.667 0.00 0.0 0.00 4.34 R
5886 13224 1.890041 GCCACACGCTTACACCACA 60.890 57.895 0.00 0.0 0.00 4.17 R
6665 16139 0.394762 CATCAGGTGATGTGGGTGGG 60.395 60.000 11.22 0.0 45.10 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 202 4.813161 ACTTGTATCATATCAGTGTGCAGC 59.187 41.667 0.00 0.00 0.00 5.25
222 224 6.311445 CAGCTTGTAGTTGTCGATACAAATCT 59.689 38.462 9.83 7.58 46.84 2.40
241 243 2.629137 TCTGTAGGGTTCGCTTGTGTTA 59.371 45.455 0.00 0.00 0.00 2.41
242 244 2.993899 CTGTAGGGTTCGCTTGTGTTAG 59.006 50.000 0.00 0.00 0.00 2.34
245 247 2.218603 AGGGTTCGCTTGTGTTAGTTG 58.781 47.619 0.00 0.00 0.00 3.16
246 248 1.334689 GGGTTCGCTTGTGTTAGTTGC 60.335 52.381 0.00 0.00 0.00 4.17
264 266 3.153369 TGCAGCTTTCAGGTTGGATTA 57.847 42.857 0.00 0.00 0.00 1.75
354 356 5.294552 GCTTGTTATAGTCCCAGCTTTACTG 59.705 44.000 3.22 0.00 46.77 2.74
383 392 5.823353 GACTGTGTATAAGTCAGTCCTAGC 58.177 45.833 16.04 0.00 46.85 3.42
401 410 5.593095 TCCTAGCTTGTATCGTATTGACTGT 59.407 40.000 0.00 0.00 0.00 3.55
411 420 9.292846 TGTATCGTATTGACTGTGTTTATGTAC 57.707 33.333 0.00 0.00 0.00 2.90
412 421 9.512435 GTATCGTATTGACTGTGTTTATGTACT 57.488 33.333 0.00 0.00 0.00 2.73
486 495 4.025480 CAGTTTTCTGCAGTCCATTTTTGC 60.025 41.667 14.67 0.00 41.24 3.68
487 496 4.122046 GTTTTCTGCAGTCCATTTTTGCT 58.878 39.130 14.67 0.00 38.60 3.91
491 500 3.255642 TCTGCAGTCCATTTTTGCTAACC 59.744 43.478 14.67 0.00 38.60 2.85
566 575 5.803967 GCCAAATTTGTCTCATCATCTCAAC 59.196 40.000 16.73 0.00 0.00 3.18
665 674 9.566432 TCCAGCCAACAACAAAATATTAAAATT 57.434 25.926 0.00 0.00 0.00 1.82
708 717 5.876357 ACAGACTTGTATTGGTACCATTGT 58.124 37.500 17.17 6.32 35.25 2.71
727 736 7.336427 ACCATTGTTGCATCAAGAAAAGAAAAA 59.664 29.630 15.02 0.00 30.80 1.94
728 737 7.853929 CCATTGTTGCATCAAGAAAAGAAAAAG 59.146 33.333 15.02 0.00 30.80 2.27
729 738 6.907206 TGTTGCATCAAGAAAAGAAAAAGG 57.093 33.333 0.00 0.00 0.00 3.11
730 739 6.638610 TGTTGCATCAAGAAAAGAAAAAGGA 58.361 32.000 0.00 0.00 0.00 3.36
731 740 7.102346 TGTTGCATCAAGAAAAGAAAAAGGAA 58.898 30.769 0.00 0.00 0.00 3.36
732 741 7.605691 TGTTGCATCAAGAAAAGAAAAAGGAAA 59.394 29.630 0.00 0.00 0.00 3.13
737 746 9.816354 CATCAAGAAAAGAAAAAGGAAAACCTA 57.184 29.630 0.00 0.00 0.00 3.08
742 751 6.747414 AAAGAAAAAGGAAAACCTATGGCT 57.253 33.333 0.00 0.00 0.00 4.75
773 782 1.133792 AGGACCCCATATTCGCTTTGG 60.134 52.381 0.00 0.00 0.00 3.28
818 827 3.063452 ACAAAGTACACACAAGACTTGCG 59.937 43.478 15.24 8.41 33.75 4.85
827 836 1.933853 ACAAGACTTGCGCCGATTATC 59.066 47.619 15.24 0.00 0.00 1.75
965 977 1.399440 CTGGATTTGTGAGGCGACATG 59.601 52.381 0.00 0.00 0.00 3.21
989 1001 1.125093 TCCAGGTCACCATGGTTCGT 61.125 55.000 16.84 10.31 37.84 3.85
990 1002 0.673644 CCAGGTCACCATGGTTCGTC 60.674 60.000 16.84 5.40 0.00 4.20
1058 1073 6.321181 TGTGAATCAGGACAATTAATTAGGCC 59.679 38.462 12.22 12.22 0.00 5.19
1093 1108 7.306953 CCAAGTACTACTAGTGTCTTGAGTTC 58.693 42.308 23.17 9.74 40.43 3.01
1094 1109 6.724694 AGTACTACTAGTGTCTTGAGTTCG 57.275 41.667 5.39 0.00 0.00 3.95
1095 1110 6.229733 AGTACTACTAGTGTCTTGAGTTCGT 58.770 40.000 5.39 0.00 0.00 3.85
1096 1111 5.610235 ACTACTAGTGTCTTGAGTTCGTC 57.390 43.478 5.39 0.00 0.00 4.20
1153 1174 6.368243 CGATGAATATGAAGAGGAAGGATGTG 59.632 42.308 0.00 0.00 0.00 3.21
1234 1255 2.938756 GCTGCTGCCTCCATATGGTATC 60.939 54.545 21.28 11.38 36.34 2.24
1293 1314 5.537300 TCATGAGTTCTACCTAGATTGGC 57.463 43.478 0.00 0.00 31.40 4.52
1425 1446 3.958798 TGACCTGGATAGTTAGCAGGTAC 59.041 47.826 0.00 0.00 45.28 3.34
1433 1454 5.279056 GGATAGTTAGCAGGTACTTAGCAGG 60.279 48.000 7.31 0.00 34.60 4.85
1489 1510 4.952335 AGAACTTCTTGGCCTTATTGGATG 59.048 41.667 3.32 0.00 38.35 3.51
1494 1515 5.708736 TCTTGGCCTTATTGGATGAGTAA 57.291 39.130 3.32 0.00 38.35 2.24
1585 5812 6.796705 ACCAAGATTAACTCGATTCGTTTT 57.203 33.333 5.89 3.39 0.00 2.43
1725 5954 2.808919 TGTGCTCTAACTCCTACTGCT 58.191 47.619 0.00 0.00 0.00 4.24
1726 5955 3.964411 TGTGCTCTAACTCCTACTGCTA 58.036 45.455 0.00 0.00 0.00 3.49
1727 5956 3.948473 TGTGCTCTAACTCCTACTGCTAG 59.052 47.826 0.00 0.00 0.00 3.42
1801 6030 1.345741 CTTCAGAGCCACCACTCAAGA 59.654 52.381 0.00 0.00 39.26 3.02
1802 6031 1.423584 TCAGAGCCACCACTCAAGAA 58.576 50.000 0.00 0.00 39.26 2.52
1805 6034 1.490490 AGAGCCACCACTCAAGAACAA 59.510 47.619 0.00 0.00 39.26 2.83
1894 6135 5.038651 TCCTTTCTTTTCGGGTTAGTGAA 57.961 39.130 0.00 0.00 0.00 3.18
1895 6136 5.438833 TCCTTTCTTTTCGGGTTAGTGAAA 58.561 37.500 0.00 0.00 32.57 2.69
1896 6137 5.887035 TCCTTTCTTTTCGGGTTAGTGAAAA 59.113 36.000 0.87 0.87 40.65 2.29
1897 6138 6.377712 TCCTTTCTTTTCGGGTTAGTGAAAAA 59.622 34.615 2.31 0.00 41.87 1.94
1972 6213 8.948631 TTGTTAACATTGTTTATGGAAAGCAA 57.051 26.923 9.56 0.00 38.64 3.91
1999 6240 1.372087 GGTAGCATGCTGTCTGGTGC 61.372 60.000 30.42 5.39 37.84 5.01
2000 6241 0.674581 GTAGCATGCTGTCTGGTGCA 60.675 55.000 30.42 3.38 43.67 4.57
2008 6249 2.038952 TGCTGTCTGGTGCAGTTTATCT 59.961 45.455 0.00 0.00 36.42 1.98
2012 6253 4.820897 TGTCTGGTGCAGTTTATCTACAG 58.179 43.478 0.00 0.00 32.61 2.74
2018 6259 6.049149 TGGTGCAGTTTATCTACAGAATAGC 58.951 40.000 0.00 0.00 0.00 2.97
2024 6265 7.151308 CAGTTTATCTACAGAATAGCCTGGAG 58.849 42.308 0.00 0.00 44.62 3.86
2027 6268 7.762588 TTATCTACAGAATAGCCTGGAGTAC 57.237 40.000 0.00 0.00 43.86 2.73
2036 6277 6.995091 AGAATAGCCTGGAGTACATTGAATTC 59.005 38.462 0.00 0.00 0.00 2.17
2039 6280 5.675538 AGCCTGGAGTACATTGAATTCTAC 58.324 41.667 7.05 0.89 0.00 2.59
2042 6283 7.125811 AGCCTGGAGTACATTGAATTCTACTAA 59.874 37.037 7.05 0.00 0.00 2.24
2043 6284 7.934120 GCCTGGAGTACATTGAATTCTACTAAT 59.066 37.037 7.05 0.00 0.00 1.73
2046 6287 9.982651 TGGAGTACATTGAATTCTACTAATAGC 57.017 33.333 7.05 0.00 0.00 2.97
2047 6288 9.982651 GGAGTACATTGAATTCTACTAATAGCA 57.017 33.333 7.05 0.00 0.00 3.49
2521 6762 1.943340 GTAGCATTAGCCACAGCCTTC 59.057 52.381 0.00 0.00 43.56 3.46
2895 7136 1.875576 CGCAGGAGACAAAAGCTCACT 60.876 52.381 0.00 0.00 34.07 3.41
2941 7182 1.228124 CGACATGGGTGTGGTGGTT 60.228 57.895 0.00 0.00 39.09 3.67
3042 7283 3.492656 CGAGAAGTGACCTCAACTCCAAA 60.493 47.826 0.00 0.00 0.00 3.28
3528 7770 1.573932 CATGACGCTGCCGAAAACA 59.426 52.632 0.00 0.00 38.29 2.83
3708 7950 0.322366 TCTCGCCAATGTGGAATGCA 60.322 50.000 0.00 0.00 40.96 3.96
4028 8270 2.434185 GCGACTCCGGCATCACAA 60.434 61.111 0.00 0.00 36.06 3.33
4239 8481 4.654412 GGAGATGCTCGGCGCGAT 62.654 66.667 12.10 0.00 43.27 4.58
4487 8729 1.140852 CAGTGGACACAGGAAGGTTGA 59.859 52.381 5.14 0.00 0.00 3.18
4515 8757 5.012354 AGGGAAAAACATGCTCATCAAACAT 59.988 36.000 0.00 0.00 0.00 2.71
4923 9165 4.127171 GCTAAACGATGAGCTATCCCAAA 58.873 43.478 0.00 0.00 35.73 3.28
5100 9350 6.425114 CAGGTAAAGCGACTATAAGCATCAAT 59.575 38.462 0.00 0.00 35.48 2.57
5788 11623 7.653647 ACAGAAGCTATACATAGTCTAACAGC 58.346 38.462 0.00 0.00 32.96 4.40
5789 11624 7.285629 ACAGAAGCTATACATAGTCTAACAGCA 59.714 37.037 0.00 0.00 32.96 4.41
5790 11625 8.303156 CAGAAGCTATACATAGTCTAACAGCAT 58.697 37.037 0.00 0.00 32.96 3.79
5791 11626 8.303156 AGAAGCTATACATAGTCTAACAGCATG 58.697 37.037 0.00 0.00 35.83 4.06
5792 11627 6.393990 AGCTATACATAGTCTAACAGCATGC 58.606 40.000 10.51 10.51 34.04 4.06
5793 11628 6.015095 AGCTATACATAGTCTAACAGCATGCA 60.015 38.462 21.98 0.00 34.04 3.96
5859 11694 1.069636 CGCTTGCAGGTTTCTTCTGAC 60.070 52.381 0.00 0.00 34.36 3.51
5886 13224 4.202161 CCGAGTGGCACTCTACTGAATATT 60.202 45.833 36.67 6.48 42.92 1.28
5938 13276 2.031245 TGAACATGTCCGTTTCATGCAC 60.031 45.455 0.00 6.67 44.26 4.57
5951 13289 6.238347 CCGTTTCATGCACTGTATTGCTAATA 60.238 38.462 0.00 0.00 43.41 0.98
6023 13365 6.301486 ACTTTTAAATGTTACTCCCTCCGTT 58.699 36.000 1.06 0.00 0.00 4.44
6078 13420 9.010767 ACACTACTTATTAATTTATGGGTCCCT 57.989 33.333 10.00 0.00 0.00 4.20
6088 13430 7.460214 AATTTATGGGTCCCTATAGTGTTCA 57.540 36.000 10.00 0.00 0.00 3.18
6089 13431 7.648177 ATTTATGGGTCCCTATAGTGTTCAT 57.352 36.000 10.00 0.00 0.00 2.57
6090 13432 6.681729 TTATGGGTCCCTATAGTGTTCATC 57.318 41.667 10.00 0.00 0.00 2.92
6091 13433 4.280789 TGGGTCCCTATAGTGTTCATCT 57.719 45.455 10.00 0.00 0.00 2.90
6092 13434 5.412617 TGGGTCCCTATAGTGTTCATCTA 57.587 43.478 10.00 0.00 0.00 1.98
6093 13435 5.784023 TGGGTCCCTATAGTGTTCATCTAA 58.216 41.667 10.00 0.00 0.00 2.10
6094 13436 5.839063 TGGGTCCCTATAGTGTTCATCTAAG 59.161 44.000 10.00 0.00 0.00 2.18
6095 13437 6.075984 GGGTCCCTATAGTGTTCATCTAAGA 58.924 44.000 0.00 0.00 0.00 2.10
6096 13438 6.726764 GGGTCCCTATAGTGTTCATCTAAGAT 59.273 42.308 0.00 0.00 0.00 2.40
6097 13439 7.310113 GGGTCCCTATAGTGTTCATCTAAGATG 60.310 44.444 0.00 0.00 0.00 2.90
6098 13440 7.451877 GGTCCCTATAGTGTTCATCTAAGATGA 59.548 40.741 0.00 0.00 0.00 2.92
6099 13441 8.301002 GTCCCTATAGTGTTCATCTAAGATGAC 58.699 40.741 0.00 0.00 0.00 3.06
6100 13442 8.004801 TCCCTATAGTGTTCATCTAAGATGACA 58.995 37.037 0.00 0.00 0.00 3.58
6101 13443 8.811017 CCCTATAGTGTTCATCTAAGATGACAT 58.189 37.037 0.00 0.00 0.00 3.06
6102 13444 9.853555 CCTATAGTGTTCATCTAAGATGACATC 57.146 37.037 7.39 7.39 0.00 3.06
6103 13445 9.553418 CTATAGTGTTCATCTAAGATGACATCG 57.447 37.037 9.77 0.00 0.00 3.84
6104 13446 6.214191 AGTGTTCATCTAAGATGACATCGT 57.786 37.500 9.77 9.33 0.00 3.73
6105 13447 6.634805 AGTGTTCATCTAAGATGACATCGTT 58.365 36.000 9.21 7.16 0.00 3.85
6106 13448 7.772166 AGTGTTCATCTAAGATGACATCGTTA 58.228 34.615 9.21 7.84 0.00 3.18
6107 13449 8.251026 AGTGTTCATCTAAGATGACATCGTTAA 58.749 33.333 9.21 0.00 0.00 2.01
6108 13450 9.035607 GTGTTCATCTAAGATGACATCGTTAAT 57.964 33.333 9.21 1.58 0.00 1.40
6109 13451 9.034544 TGTTCATCTAAGATGACATCGTTAATG 57.965 33.333 9.21 12.34 41.48 1.90
6355 15828 1.416401 GATGCCCTCCGATCCTTACAA 59.584 52.381 0.00 0.00 0.00 2.41
6486 15960 6.808829 TCGATAAAAGTTCCGCTAAATAGGA 58.191 36.000 0.00 0.00 34.19 2.94
6558 16032 9.191995 CACTCTTAATGTTTTTGTTATGTTCCC 57.808 33.333 0.00 0.00 0.00 3.97
6559 16033 8.364894 ACTCTTAATGTTTTTGTTATGTTCCCC 58.635 33.333 0.00 0.00 0.00 4.81
6560 16034 7.672240 TCTTAATGTTTTTGTTATGTTCCCCC 58.328 34.615 0.00 0.00 0.00 5.40
6561 16035 7.511028 TCTTAATGTTTTTGTTATGTTCCCCCT 59.489 33.333 0.00 0.00 0.00 4.79
6562 16036 6.508030 AATGTTTTTGTTATGTTCCCCCTT 57.492 33.333 0.00 0.00 0.00 3.95
6563 16037 5.538849 TGTTTTTGTTATGTTCCCCCTTC 57.461 39.130 0.00 0.00 0.00 3.46
6564 16038 5.212745 TGTTTTTGTTATGTTCCCCCTTCT 58.787 37.500 0.00 0.00 0.00 2.85
6565 16039 5.303333 TGTTTTTGTTATGTTCCCCCTTCTC 59.697 40.000 0.00 0.00 0.00 2.87
6566 16040 3.732048 TTGTTATGTTCCCCCTTCTCC 57.268 47.619 0.00 0.00 0.00 3.71
6567 16041 1.920351 TGTTATGTTCCCCCTTCTCCC 59.080 52.381 0.00 0.00 0.00 4.30
6568 16042 1.134189 GTTATGTTCCCCCTTCTCCCG 60.134 57.143 0.00 0.00 0.00 5.14
6569 16043 0.043637 TATGTTCCCCCTTCTCCCGT 59.956 55.000 0.00 0.00 0.00 5.28
6570 16044 1.272554 ATGTTCCCCCTTCTCCCGTC 61.273 60.000 0.00 0.00 0.00 4.79
6571 16045 2.285144 TTCCCCCTTCTCCCGTCC 60.285 66.667 0.00 0.00 0.00 4.79
6572 16046 2.877018 TTCCCCCTTCTCCCGTCCT 61.877 63.158 0.00 0.00 0.00 3.85
6573 16047 2.285442 CCCCCTTCTCCCGTCCTT 60.285 66.667 0.00 0.00 0.00 3.36
6574 16048 1.923909 CCCCCTTCTCCCGTCCTTT 60.924 63.158 0.00 0.00 0.00 3.11
6575 16049 1.299976 CCCCTTCTCCCGTCCTTTG 59.700 63.158 0.00 0.00 0.00 2.77
6576 16050 1.489560 CCCCTTCTCCCGTCCTTTGT 61.490 60.000 0.00 0.00 0.00 2.83
6578 16052 1.202891 CCCTTCTCCCGTCCTTTGTTT 60.203 52.381 0.00 0.00 0.00 2.83
6579 16053 2.583143 CCTTCTCCCGTCCTTTGTTTT 58.417 47.619 0.00 0.00 0.00 2.43
6582 16056 2.294074 TCTCCCGTCCTTTGTTTTGTG 58.706 47.619 0.00 0.00 0.00 3.33
6583 16057 1.336755 CTCCCGTCCTTTGTTTTGTGG 59.663 52.381 0.00 0.00 0.00 4.17
6584 16058 0.249280 CCCGTCCTTTGTTTTGTGGC 60.249 55.000 0.00 0.00 0.00 5.01
6585 16059 0.249280 CCGTCCTTTGTTTTGTGGCC 60.249 55.000 0.00 0.00 0.00 5.36
6586 16060 0.593773 CGTCCTTTGTTTTGTGGCCG 60.594 55.000 0.00 0.00 0.00 6.13
6588 16062 1.040339 TCCTTTGTTTTGTGGCCGCT 61.040 50.000 18.96 0.00 0.00 5.52
6589 16063 0.179086 CCTTTGTTTTGTGGCCGCTT 60.179 50.000 18.96 0.00 0.00 4.68
6590 16064 1.650825 CTTTGTTTTGTGGCCGCTTT 58.349 45.000 18.96 0.00 0.00 3.51
6591 16065 2.006169 CTTTGTTTTGTGGCCGCTTTT 58.994 42.857 18.96 0.00 0.00 2.27
6593 16067 2.211353 TGTTTTGTGGCCGCTTTTAC 57.789 45.000 18.96 10.66 0.00 2.01
6594 16068 1.125270 GTTTTGTGGCCGCTTTTACG 58.875 50.000 18.96 0.00 0.00 3.18
6602 16076 2.857448 CGCTTTTACGGCGCTTCA 59.143 55.556 6.90 0.00 45.83 3.02
6603 16077 1.225745 CGCTTTTACGGCGCTTCAG 60.226 57.895 6.90 0.00 45.83 3.02
6604 16078 1.134694 GCTTTTACGGCGCTTCAGG 59.865 57.895 6.90 0.00 0.00 3.86
6605 16079 1.134694 CTTTTACGGCGCTTCAGGC 59.865 57.895 6.90 0.00 37.64 4.85
6614 16088 3.497031 GCTTCAGGCGCCGGTTAC 61.497 66.667 26.04 12.49 0.00 2.50
6615 16089 2.047655 CTTCAGGCGCCGGTTACA 60.048 61.111 26.04 3.78 0.00 2.41
6616 16090 2.047655 TTCAGGCGCCGGTTACAG 60.048 61.111 26.04 8.95 0.00 2.74
6618 16092 3.118454 CAGGCGCCGGTTACAGTG 61.118 66.667 23.20 7.30 0.00 3.66
6621 16095 3.350612 GCGCCGGTTACAGTGCAA 61.351 61.111 1.90 0.00 39.31 4.08
6623 16097 1.082366 CGCCGGTTACAGTGCAAAC 60.082 57.895 1.90 0.00 0.00 2.93
6624 16098 1.503818 CGCCGGTTACAGTGCAAACT 61.504 55.000 1.90 0.00 0.00 2.66
6625 16099 0.040425 GCCGGTTACAGTGCAAACTG 60.040 55.000 1.90 9.73 43.03 3.16
6635 16109 3.694734 CAGTGCAAACTGTAAAGTGTGG 58.305 45.455 5.34 0.00 33.32 4.17
6636 16110 2.099098 AGTGCAAACTGTAAAGTGTGGC 59.901 45.455 5.34 1.58 0.00 5.01
6638 16112 1.681264 GCAAACTGTAAAGTGTGGCCT 59.319 47.619 3.32 0.00 0.00 5.19
6639 16113 2.543653 GCAAACTGTAAAGTGTGGCCTG 60.544 50.000 3.32 0.00 0.00 4.85
6640 16114 2.948979 CAAACTGTAAAGTGTGGCCTGA 59.051 45.455 3.32 0.00 0.00 3.86
6641 16115 3.290948 AACTGTAAAGTGTGGCCTGAA 57.709 42.857 3.32 0.00 0.00 3.02
6642 16116 3.508845 ACTGTAAAGTGTGGCCTGAAT 57.491 42.857 3.32 0.00 0.00 2.57
6643 16117 3.149196 ACTGTAAAGTGTGGCCTGAATG 58.851 45.455 3.32 0.00 0.00 2.67
6644 16118 3.181445 ACTGTAAAGTGTGGCCTGAATGA 60.181 43.478 3.32 0.00 0.00 2.57
6645 16119 3.820467 CTGTAAAGTGTGGCCTGAATGAA 59.180 43.478 3.32 0.00 0.00 2.57
6649 16123 2.880443 AGTGTGGCCTGAATGAATGTT 58.120 42.857 3.32 0.00 0.00 2.71
6650 16124 2.821969 AGTGTGGCCTGAATGAATGTTC 59.178 45.455 3.32 0.00 0.00 3.18
6652 16126 0.810648 TGGCCTGAATGAATGTTCGC 59.189 50.000 3.32 0.00 0.00 4.70
6653 16127 1.098050 GGCCTGAATGAATGTTCGCT 58.902 50.000 0.00 0.00 0.00 4.93
6655 16129 1.796617 GCCTGAATGAATGTTCGCTGC 60.797 52.381 0.00 0.00 0.00 5.25
6658 16132 2.153645 TGAATGAATGTTCGCTGCACT 58.846 42.857 0.00 0.00 0.00 4.40
6659 16133 3.333804 TGAATGAATGTTCGCTGCACTA 58.666 40.909 0.00 0.00 0.00 2.74
6662 16136 1.804151 TGAATGTTCGCTGCACTAACC 59.196 47.619 0.00 0.00 0.00 2.85
6664 16138 1.156736 ATGTTCGCTGCACTAACCAC 58.843 50.000 0.00 0.00 0.00 4.16
6665 16139 0.882927 TGTTCGCTGCACTAACCACC 60.883 55.000 0.00 0.00 0.00 4.61
6666 16140 1.302192 TTCGCTGCACTAACCACCC 60.302 57.895 0.00 0.00 0.00 4.61
6667 16141 2.741486 TTCGCTGCACTAACCACCCC 62.741 60.000 0.00 0.00 0.00 4.95
6668 16142 2.434331 GCTGCACTAACCACCCCA 59.566 61.111 0.00 0.00 0.00 4.96
6669 16143 1.971695 GCTGCACTAACCACCCCAC 60.972 63.158 0.00 0.00 0.00 4.61
6673 16147 1.074248 CACTAACCACCCCACCCAC 59.926 63.158 0.00 0.00 0.00 4.61
6674 16148 1.386200 ACTAACCACCCCACCCACA 60.386 57.895 0.00 0.00 0.00 4.17
6675 16149 0.774491 ACTAACCACCCCACCCACAT 60.774 55.000 0.00 0.00 0.00 3.21
6677 16151 0.772517 TAACCACCCCACCCACATCA 60.773 55.000 0.00 0.00 0.00 3.07
6678 16152 2.035626 CCACCCCACCCACATCAC 59.964 66.667 0.00 0.00 0.00 3.06
6679 16153 2.035626 CACCCCACCCACATCACC 59.964 66.667 0.00 0.00 0.00 4.02
6681 16155 2.356278 CCCCACCCACATCACCTG 59.644 66.667 0.00 0.00 0.00 4.00
6682 16156 2.230653 CCCCACCCACATCACCTGA 61.231 63.158 0.00 0.00 0.00 3.86
6683 16157 1.574526 CCCCACCCACATCACCTGAT 61.575 60.000 0.00 0.00 34.56 2.90
6695 16169 5.143916 CATCACCTGATGCGTTTAGTTAC 57.856 43.478 2.36 0.00 44.44 2.50
6696 16170 4.530710 TCACCTGATGCGTTTAGTTACT 57.469 40.909 0.00 0.00 0.00 2.24
6697 16171 4.491676 TCACCTGATGCGTTTAGTTACTC 58.508 43.478 0.00 0.00 0.00 2.59
6698 16172 3.617263 CACCTGATGCGTTTAGTTACTCC 59.383 47.826 0.00 0.00 0.00 3.85
6699 16173 3.514309 ACCTGATGCGTTTAGTTACTCCT 59.486 43.478 0.00 0.00 0.00 3.69
6700 16174 4.020485 ACCTGATGCGTTTAGTTACTCCTT 60.020 41.667 0.00 0.00 0.00 3.36
6701 16175 4.935808 CCTGATGCGTTTAGTTACTCCTTT 59.064 41.667 0.00 0.00 0.00 3.11
6702 16176 5.063564 CCTGATGCGTTTAGTTACTCCTTTC 59.936 44.000 0.00 0.00 0.00 2.62
6703 16177 4.933400 TGATGCGTTTAGTTACTCCTTTCC 59.067 41.667 0.00 0.00 0.00 3.13
6704 16178 3.667360 TGCGTTTAGTTACTCCTTTCCC 58.333 45.455 0.00 0.00 0.00 3.97
6705 16179 2.669924 GCGTTTAGTTACTCCTTTCCCG 59.330 50.000 0.00 0.00 0.00 5.14
6707 16181 3.922850 CGTTTAGTTACTCCTTTCCCGTC 59.077 47.826 0.00 0.00 0.00 4.79
6708 16182 4.321527 CGTTTAGTTACTCCTTTCCCGTCT 60.322 45.833 0.00 0.00 0.00 4.18
6709 16183 5.545588 GTTTAGTTACTCCTTTCCCGTCTT 58.454 41.667 0.00 0.00 0.00 3.01
6710 16184 5.813513 TTAGTTACTCCTTTCCCGTCTTT 57.186 39.130 0.00 0.00 0.00 2.52
6711 16185 4.701651 AGTTACTCCTTTCCCGTCTTTT 57.298 40.909 0.00 0.00 0.00 2.27
6712 16186 5.045012 AGTTACTCCTTTCCCGTCTTTTT 57.955 39.130 0.00 0.00 0.00 1.94
6750 18437 5.774498 TCCTTTTTCTTGCTCCTTTTCTC 57.226 39.130 0.00 0.00 0.00 2.87
6754 18441 7.044181 CCTTTTTCTTGCTCCTTTTCTCTTTT 58.956 34.615 0.00 0.00 0.00 2.27
6756 18443 7.832503 TTTTCTTGCTCCTTTTCTCTTTTTG 57.167 32.000 0.00 0.00 0.00 2.44
6757 18444 6.530019 TTCTTGCTCCTTTTCTCTTTTTGT 57.470 33.333 0.00 0.00 0.00 2.83
6758 18445 6.530019 TCTTGCTCCTTTTCTCTTTTTGTT 57.470 33.333 0.00 0.00 0.00 2.83
6759 18446 6.332630 TCTTGCTCCTTTTCTCTTTTTGTTG 58.667 36.000 0.00 0.00 0.00 3.33
6761 18448 6.279513 TGCTCCTTTTCTCTTTTTGTTGAA 57.720 33.333 0.00 0.00 0.00 2.69
6762 18449 6.099341 TGCTCCTTTTCTCTTTTTGTTGAAC 58.901 36.000 0.00 0.00 0.00 3.18
6763 18450 6.071391 TGCTCCTTTTCTCTTTTTGTTGAACT 60.071 34.615 0.00 0.00 0.00 3.01
6764 18451 6.254373 GCTCCTTTTCTCTTTTTGTTGAACTG 59.746 38.462 0.00 0.00 0.00 3.16
6767 18454 8.147704 TCCTTTTCTCTTTTTGTTGAACTGTTT 58.852 29.630 0.00 0.00 0.00 2.83
6768 18455 8.773645 CCTTTTCTCTTTTTGTTGAACTGTTTT 58.226 29.630 0.00 0.00 0.00 2.43
6769 18456 9.584839 CTTTTCTCTTTTTGTTGAACTGTTTTG 57.415 29.630 0.00 0.00 0.00 2.44
6770 18457 8.655651 TTTCTCTTTTTGTTGAACTGTTTTGT 57.344 26.923 0.00 0.00 0.00 2.83
6771 18458 9.751542 TTTCTCTTTTTGTTGAACTGTTTTGTA 57.248 25.926 0.00 0.00 0.00 2.41
6772 18459 9.921637 TTCTCTTTTTGTTGAACTGTTTTGTAT 57.078 25.926 0.00 0.00 0.00 2.29
6773 18460 9.352784 TCTCTTTTTGTTGAACTGTTTTGTATG 57.647 29.630 0.00 0.00 0.00 2.39
6774 18461 8.472683 TCTTTTTGTTGAACTGTTTTGTATGG 57.527 30.769 0.00 0.00 0.00 2.74
6775 18462 8.091449 TCTTTTTGTTGAACTGTTTTGTATGGT 58.909 29.630 0.00 0.00 0.00 3.55
6776 18463 8.608844 TTTTTGTTGAACTGTTTTGTATGGTT 57.391 26.923 0.00 0.00 0.00 3.67
6777 18464 8.608844 TTTTGTTGAACTGTTTTGTATGGTTT 57.391 26.923 0.00 0.00 0.00 3.27
6778 18465 8.608844 TTTGTTGAACTGTTTTGTATGGTTTT 57.391 26.923 0.00 0.00 0.00 2.43
6780 18467 8.245701 TGTTGAACTGTTTTGTATGGTTTTTC 57.754 30.769 0.00 0.00 0.00 2.29
6781 18468 8.091449 TGTTGAACTGTTTTGTATGGTTTTTCT 58.909 29.630 0.00 0.00 0.00 2.52
6893 18580 9.695526 TTGATGAACATTTTCTAAAACCTGATG 57.304 29.630 0.00 0.00 32.36 3.07
6894 18581 9.076781 TGATGAACATTTTCTAAAACCTGATGA 57.923 29.630 0.00 0.00 32.36 2.92
6895 18582 9.912634 GATGAACATTTTCTAAAACCTGATGAA 57.087 29.630 0.00 0.00 32.36 2.57
6896 18583 9.696917 ATGAACATTTTCTAAAACCTGATGAAC 57.303 29.630 0.00 0.00 32.36 3.18
6935 18622 8.845942 TGATGAGCTTATTTTCAAAATCGATG 57.154 30.769 0.00 0.00 0.00 3.84
6936 18623 8.676401 TGATGAGCTTATTTTCAAAATCGATGA 58.324 29.630 0.00 0.00 0.00 2.92
6938 18625 8.673626 TGAGCTTATTTTCAAAATCGATGAAC 57.326 30.769 0.00 0.00 36.57 3.18
6940 18627 9.346725 GAGCTTATTTTCAAAATCGATGAACTT 57.653 29.630 0.00 0.00 36.57 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 180 5.055144 AGCTGCACACTGATATGATACAAG 58.945 41.667 1.02 0.00 0.00 3.16
200 202 7.582435 ACAGATTTGTATCGACAACTACAAG 57.418 36.000 8.79 2.29 45.29 3.16
222 224 2.366266 ACTAACACAAGCGAACCCTACA 59.634 45.455 0.00 0.00 0.00 2.74
241 243 1.035139 CCAACCTGAAAGCTGCAACT 58.965 50.000 1.02 0.00 0.00 3.16
242 244 1.032014 TCCAACCTGAAAGCTGCAAC 58.968 50.000 1.02 0.00 0.00 4.17
245 247 3.181483 CCATAATCCAACCTGAAAGCTGC 60.181 47.826 0.00 0.00 0.00 5.25
246 248 3.382546 CCCATAATCCAACCTGAAAGCTG 59.617 47.826 0.00 0.00 0.00 4.24
354 356 6.015027 ACTGACTTATACACAGTCACTGAC 57.985 41.667 13.14 0.38 44.66 3.51
383 392 8.869897 ACATAAACACAGTCAATACGATACAAG 58.130 33.333 0.00 0.00 0.00 3.16
414 423 9.720769 ACTGCACTAGTTACAACTTATACAAAT 57.279 29.630 0.00 0.00 40.37 2.32
446 455 2.257207 ACTGCACTAGTAGCCCTGAAA 58.743 47.619 12.71 0.00 38.04 2.69
486 495 7.611213 ACAATTCATACTTCTTTCCGGTTAG 57.389 36.000 0.00 0.00 0.00 2.34
487 496 9.675464 AATACAATTCATACTTCTTTCCGGTTA 57.325 29.630 0.00 0.00 0.00 2.85
566 575 5.793817 TCATGAGTTTACATATCATCCCCG 58.206 41.667 0.00 0.00 31.38 5.73
675 684 6.367969 ACCAATACAAGTCTGTCGAATTACAC 59.632 38.462 0.00 0.00 36.96 2.90
683 692 4.182693 TGGTACCAATACAAGTCTGTCG 57.817 45.455 13.60 0.00 36.96 4.35
708 717 8.450180 GTTTTCCTTTTTCTTTTCTTGATGCAA 58.550 29.630 0.00 0.00 0.00 4.08
727 736 6.225103 CCTCATGGAGCCATAGGTTTTCCT 62.225 50.000 0.93 0.00 44.38 3.36
728 737 3.217626 CTCATGGAGCCATAGGTTTTCC 58.782 50.000 0.93 0.00 35.79 3.13
729 738 3.217626 CCTCATGGAGCCATAGGTTTTC 58.782 50.000 0.93 0.00 34.91 2.29
730 739 2.687914 GCCTCATGGAGCCATAGGTTTT 60.688 50.000 18.15 0.00 34.91 2.43
731 740 1.133668 GCCTCATGGAGCCATAGGTTT 60.134 52.381 18.15 0.00 34.91 3.27
732 741 0.475906 GCCTCATGGAGCCATAGGTT 59.524 55.000 18.15 0.00 34.91 3.50
742 751 2.692368 GGGTCCTGGCCTCATGGA 60.692 66.667 3.32 3.62 34.57 3.41
754 763 1.133915 TCCAAAGCGAATATGGGGTCC 60.134 52.381 0.00 0.00 34.89 4.46
773 782 1.609072 GCACCTCACCCTTTTGACTTC 59.391 52.381 0.00 0.00 0.00 3.01
818 827 2.625790 ACCTCTCTGACTGATAATCGGC 59.374 50.000 0.00 0.00 0.00 5.54
827 836 7.043059 GCGATAAAATAAAGACCTCTCTGACTG 60.043 40.741 0.00 0.00 0.00 3.51
891 902 7.390996 TCCGTCTATTGACTAATCCTAGCTAAG 59.609 40.741 5.76 0.00 40.86 2.18
943 955 1.278985 TGTCGCCTCACAAATCCAGAT 59.721 47.619 0.00 0.00 0.00 2.90
965 977 0.471617 CCATGGTGACCTGGATCCTC 59.528 60.000 14.23 2.63 34.24 3.71
989 1001 2.088950 GGGAACGAAGAATTGACCGA 57.911 50.000 0.00 0.00 0.00 4.69
1093 1108 1.095600 TCATCTTCCTCAGGACGACG 58.904 55.000 1.02 0.00 32.86 5.12
1094 1109 2.096248 AGTCATCTTCCTCAGGACGAC 58.904 52.381 1.02 3.00 32.86 4.34
1095 1110 2.095461 CAGTCATCTTCCTCAGGACGA 58.905 52.381 1.60 1.60 34.54 4.20
1096 1111 2.095461 TCAGTCATCTTCCTCAGGACG 58.905 52.381 0.00 0.00 33.84 4.79
1283 1304 1.415659 CAGAGGGAGTGCCAATCTAGG 59.584 57.143 2.50 0.00 32.33 3.02
1293 1314 9.757227 CTCTTATATTTCTTTACAGAGGGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
1329 1350 4.015764 ACTCCCTCCGTAAAGAACTAGTC 58.984 47.826 0.00 0.00 0.00 2.59
1334 1355 5.904362 TTACTACTCCCTCCGTAAAGAAC 57.096 43.478 0.00 0.00 0.00 3.01
1425 1446 5.084519 TGATATGGTACTACCCCTGCTAAG 58.915 45.833 2.59 0.00 37.50 2.18
1433 1454 8.908903 CATCTTAGATCTGATATGGTACTACCC 58.091 40.741 5.18 0.00 37.50 3.69
1512 1533 4.698201 TTCACTGTGATCCTGTGGTTTA 57.302 40.909 11.86 0.00 41.79 2.01
1513 1534 3.576078 TTCACTGTGATCCTGTGGTTT 57.424 42.857 11.86 0.00 41.79 3.27
1514 1535 3.480470 CTTTCACTGTGATCCTGTGGTT 58.520 45.455 11.86 0.00 41.79 3.67
1705 5934 2.808919 AGCAGTAGGAGTTAGAGCACA 58.191 47.619 0.00 0.00 0.00 4.57
1725 5954 2.779755 CCATGGTTGGTGCACTACTA 57.220 50.000 17.98 13.32 38.30 1.82
1726 5955 3.650647 CCATGGTTGGTGCACTACT 57.349 52.632 17.98 0.00 38.30 2.57
1801 6030 3.632145 GGTGTGTCCTGTTCTTCATTGTT 59.368 43.478 0.00 0.00 0.00 2.83
1802 6031 3.214328 GGTGTGTCCTGTTCTTCATTGT 58.786 45.455 0.00 0.00 0.00 2.71
1805 6034 1.691976 TCGGTGTGTCCTGTTCTTCAT 59.308 47.619 0.00 0.00 0.00 2.57
1972 6213 2.484264 GACAGCATGCTACCGTCTTTTT 59.516 45.455 22.19 0.00 42.53 1.94
1976 6217 0.174389 CAGACAGCATGCTACCGTCT 59.826 55.000 25.62 25.62 42.53 4.18
1985 6226 0.956633 AAACTGCACCAGACAGCATG 59.043 50.000 0.00 0.00 40.42 4.06
1999 6240 7.055667 TCCAGGCTATTCTGTAGATAAACTG 57.944 40.000 0.00 0.00 33.14 3.16
2000 6241 6.841755 ACTCCAGGCTATTCTGTAGATAAACT 59.158 38.462 0.00 0.00 33.14 2.66
2008 6249 5.897250 TCAATGTACTCCAGGCTATTCTGTA 59.103 40.000 0.00 0.00 33.14 2.74
2012 6253 6.995091 AGAATTCAATGTACTCCAGGCTATTC 59.005 38.462 8.44 0.00 0.00 1.75
2043 6284 8.511321 CCAAAACTTATTGTCTTACACATGCTA 58.489 33.333 0.00 0.00 33.90 3.49
2045 6286 6.586082 CCCAAAACTTATTGTCTTACACATGC 59.414 38.462 0.00 0.00 33.90 4.06
2046 6287 7.040062 TCCCCAAAACTTATTGTCTTACACATG 60.040 37.037 0.00 0.00 33.90 3.21
2047 6288 7.007723 TCCCCAAAACTTATTGTCTTACACAT 58.992 34.615 0.00 0.00 33.90 3.21
2521 6762 4.495019 CGTAGCAGTACTGAAGCTGAGTAG 60.495 50.000 27.08 4.63 39.30 2.57
2895 7136 5.109210 CCGACAAGATAACAGCTGTTGATA 58.891 41.667 36.50 21.02 38.90 2.15
2941 7182 0.032403 GCATGCTGAAGTGCAAACCA 59.968 50.000 11.37 0.00 46.61 3.67
3042 7283 5.048846 TCTTGGGAAGCTTCACTACTTTT 57.951 39.130 28.18 0.00 0.00 2.27
4487 8729 4.344679 TGATGAGCATGTTTTTCCCTTTGT 59.655 37.500 0.00 0.00 0.00 2.83
4547 8789 7.823745 AAGGTTACAAATGTCTTCATGTTCT 57.176 32.000 0.00 0.00 34.19 3.01
4923 9165 4.141914 ACCTCAACTCTTTCTTTCAGTCGT 60.142 41.667 0.00 0.00 0.00 4.34
5886 13224 1.890041 GCCACACGCTTACACCACA 60.890 57.895 0.00 0.00 0.00 4.17
6002 13344 5.221884 TGGAACGGAGGGAGTAACATTTAAA 60.222 40.000 0.00 0.00 0.00 1.52
6052 13394 9.010767 AGGGACCCATAAATTAATAAGTAGTGT 57.989 33.333 14.60 0.00 0.00 3.55
6062 13404 9.005318 TGAACACTATAGGGACCCATAAATTAA 57.995 33.333 14.60 0.00 0.00 1.40
6063 13405 8.570038 TGAACACTATAGGGACCCATAAATTA 57.430 34.615 14.60 0.00 0.00 1.40
6064 13406 7.460214 TGAACACTATAGGGACCCATAAATT 57.540 36.000 14.60 0.00 0.00 1.82
6065 13407 7.517604 AGATGAACACTATAGGGACCCATAAAT 59.482 37.037 14.60 3.14 0.00 1.40
6066 13408 6.849697 AGATGAACACTATAGGGACCCATAAA 59.150 38.462 14.60 0.00 0.00 1.40
6067 13409 6.390504 AGATGAACACTATAGGGACCCATAA 58.609 40.000 14.60 0.00 0.00 1.90
6068 13410 5.977533 AGATGAACACTATAGGGACCCATA 58.022 41.667 14.60 7.80 0.00 2.74
6069 13411 4.832492 AGATGAACACTATAGGGACCCAT 58.168 43.478 14.60 8.43 0.00 4.00
6070 13412 4.280789 AGATGAACACTATAGGGACCCA 57.719 45.455 14.60 3.71 0.00 4.51
6071 13413 6.075984 TCTTAGATGAACACTATAGGGACCC 58.924 44.000 9.55 0.59 0.00 4.46
6072 13414 7.451877 TCATCTTAGATGAACACTATAGGGACC 59.548 40.741 21.12 0.14 0.00 4.46
6073 13415 8.301002 GTCATCTTAGATGAACACTATAGGGAC 58.699 40.741 24.37 6.33 0.00 4.46
6074 13416 8.004801 TGTCATCTTAGATGAACACTATAGGGA 58.995 37.037 24.37 0.00 0.00 4.20
6075 13417 8.183104 TGTCATCTTAGATGAACACTATAGGG 57.817 38.462 24.37 0.00 0.00 3.53
6076 13418 9.853555 GATGTCATCTTAGATGAACACTATAGG 57.146 37.037 24.37 0.00 0.00 2.57
6077 13419 9.553418 CGATGTCATCTTAGATGAACACTATAG 57.447 37.037 24.37 11.43 0.00 1.31
6078 13420 9.067986 ACGATGTCATCTTAGATGAACACTATA 57.932 33.333 24.37 2.76 0.00 1.31
6079 13421 7.946207 ACGATGTCATCTTAGATGAACACTAT 58.054 34.615 24.37 14.13 0.00 2.12
6080 13422 7.334844 ACGATGTCATCTTAGATGAACACTA 57.665 36.000 24.37 10.57 0.00 2.74
6081 13423 6.214191 ACGATGTCATCTTAGATGAACACT 57.786 37.500 24.37 10.72 0.00 3.55
6082 13424 6.893958 AACGATGTCATCTTAGATGAACAC 57.106 37.500 24.37 14.43 0.00 3.32
6083 13425 9.034544 CATTAACGATGTCATCTTAGATGAACA 57.965 33.333 24.37 22.22 0.00 3.18
6084 13426 9.035607 ACATTAACGATGTCATCTTAGATGAAC 57.964 33.333 24.37 18.22 45.88 3.18
6099 13441 7.271223 GTGGAATTCACTCAAACATTAACGATG 59.729 37.037 7.93 0.00 42.86 3.84
6100 13442 7.305474 GTGGAATTCACTCAAACATTAACGAT 58.695 34.615 7.93 0.00 42.86 3.73
6101 13443 6.664515 GTGGAATTCACTCAAACATTAACGA 58.335 36.000 7.93 0.00 42.86 3.85
6102 13444 6.911484 GTGGAATTCACTCAAACATTAACG 57.089 37.500 7.93 0.00 42.86 3.18
6362 15835 4.263677 GCATGTTGCGTCATTGATTTGTAG 59.736 41.667 0.00 0.00 31.71 2.74
6540 16014 5.843969 AGAAGGGGGAACATAACAAAAACAT 59.156 36.000 0.00 0.00 0.00 2.71
6542 16016 5.279306 GGAGAAGGGGGAACATAACAAAAAC 60.279 44.000 0.00 0.00 0.00 2.43
6547 16021 1.920351 GGGAGAAGGGGGAACATAACA 59.080 52.381 0.00 0.00 0.00 2.41
6548 16022 1.134189 CGGGAGAAGGGGGAACATAAC 60.134 57.143 0.00 0.00 0.00 1.89
6550 16024 0.043637 ACGGGAGAAGGGGGAACATA 59.956 55.000 0.00 0.00 0.00 2.29
6551 16025 1.229853 ACGGGAGAAGGGGGAACAT 60.230 57.895 0.00 0.00 0.00 2.71
6552 16026 1.916777 GACGGGAGAAGGGGGAACA 60.917 63.158 0.00 0.00 0.00 3.18
6553 16027 2.667108 GGACGGGAGAAGGGGGAAC 61.667 68.421 0.00 0.00 0.00 3.62
6554 16028 2.285144 GGACGGGAGAAGGGGGAA 60.285 66.667 0.00 0.00 0.00 3.97
6555 16029 2.411476 AAAGGACGGGAGAAGGGGGA 62.411 60.000 0.00 0.00 0.00 4.81
6558 16032 0.400594 AACAAAGGACGGGAGAAGGG 59.599 55.000 0.00 0.00 0.00 3.95
6559 16033 2.271944 AAACAAAGGACGGGAGAAGG 57.728 50.000 0.00 0.00 0.00 3.46
6560 16034 2.949644 ACAAAACAAAGGACGGGAGAAG 59.050 45.455 0.00 0.00 0.00 2.85
6561 16035 2.685897 CACAAAACAAAGGACGGGAGAA 59.314 45.455 0.00 0.00 0.00 2.87
6562 16036 2.294074 CACAAAACAAAGGACGGGAGA 58.706 47.619 0.00 0.00 0.00 3.71
6563 16037 1.336755 CCACAAAACAAAGGACGGGAG 59.663 52.381 0.00 0.00 0.00 4.30
6564 16038 1.394618 CCACAAAACAAAGGACGGGA 58.605 50.000 0.00 0.00 0.00 5.14
6565 16039 0.249280 GCCACAAAACAAAGGACGGG 60.249 55.000 0.00 0.00 0.00 5.28
6566 16040 0.249280 GGCCACAAAACAAAGGACGG 60.249 55.000 0.00 0.00 0.00 4.79
6567 16041 3.266282 GGCCACAAAACAAAGGACG 57.734 52.632 0.00 0.00 0.00 4.79
6568 16042 0.874175 GCGGCCACAAAACAAAGGAC 60.874 55.000 2.24 0.00 0.00 3.85
6569 16043 1.040339 AGCGGCCACAAAACAAAGGA 61.040 50.000 2.24 0.00 0.00 3.36
6570 16044 0.179086 AAGCGGCCACAAAACAAAGG 60.179 50.000 2.24 0.00 0.00 3.11
6571 16045 1.650825 AAAGCGGCCACAAAACAAAG 58.349 45.000 2.24 0.00 0.00 2.77
6572 16046 2.100605 AAAAGCGGCCACAAAACAAA 57.899 40.000 2.24 0.00 0.00 2.83
6573 16047 2.541556 GTAAAAGCGGCCACAAAACAA 58.458 42.857 2.24 0.00 0.00 2.83
6574 16048 1.534175 CGTAAAAGCGGCCACAAAACA 60.534 47.619 2.24 0.00 0.00 2.83
6575 16049 1.125270 CGTAAAAGCGGCCACAAAAC 58.875 50.000 2.24 0.00 0.00 2.43
6576 16050 0.030908 CCGTAAAAGCGGCCACAAAA 59.969 50.000 2.24 0.00 45.47 2.44
6578 16052 3.346101 CCGTAAAAGCGGCCACAA 58.654 55.556 2.24 0.00 45.47 3.33
6586 16060 1.134694 CCTGAAGCGCCGTAAAAGC 59.865 57.895 2.29 0.00 0.00 3.51
6588 16062 3.259930 GCCTGAAGCGCCGTAAAA 58.740 55.556 2.29 0.00 0.00 1.52
6597 16071 3.497031 GTAACCGGCGCCTGAAGC 61.497 66.667 25.71 8.14 38.52 3.86
6598 16072 2.047655 TGTAACCGGCGCCTGAAG 60.048 61.111 25.71 12.78 0.00 3.02
6599 16073 2.047655 CTGTAACCGGCGCCTGAA 60.048 61.111 25.71 9.19 0.00 3.02
6600 16074 3.307906 ACTGTAACCGGCGCCTGA 61.308 61.111 25.71 3.36 0.00 3.86
6601 16075 3.118454 CACTGTAACCGGCGCCTG 61.118 66.667 26.68 21.87 0.00 4.85
6604 16078 2.899044 TTTGCACTGTAACCGGCGC 61.899 57.895 0.00 0.00 0.00 6.53
6605 16079 1.082366 GTTTGCACTGTAACCGGCG 60.082 57.895 0.00 0.00 0.00 6.46
6606 16080 0.040425 CAGTTTGCACTGTAACCGGC 60.040 55.000 0.00 0.00 44.96 6.13
6615 16089 2.099098 GCCACACTTTACAGTTTGCACT 59.901 45.455 0.00 0.00 30.34 4.40
6616 16090 2.459934 GCCACACTTTACAGTTTGCAC 58.540 47.619 0.00 0.00 30.34 4.57
6618 16092 1.681264 AGGCCACACTTTACAGTTTGC 59.319 47.619 5.01 0.00 30.34 3.68
6619 16093 2.948979 TCAGGCCACACTTTACAGTTTG 59.051 45.455 5.01 0.00 31.37 2.93
6620 16094 3.290948 TCAGGCCACACTTTACAGTTT 57.709 42.857 5.01 0.00 0.00 2.66
6621 16095 3.290948 TTCAGGCCACACTTTACAGTT 57.709 42.857 5.01 0.00 0.00 3.16
6623 16097 3.411446 TCATTCAGGCCACACTTTACAG 58.589 45.455 5.01 0.00 0.00 2.74
6624 16098 3.500448 TCATTCAGGCCACACTTTACA 57.500 42.857 5.01 0.00 0.00 2.41
6625 16099 4.218417 ACATTCATTCAGGCCACACTTTAC 59.782 41.667 5.01 0.00 0.00 2.01
6626 16100 4.406456 ACATTCATTCAGGCCACACTTTA 58.594 39.130 5.01 0.00 0.00 1.85
6627 16101 3.233507 ACATTCATTCAGGCCACACTTT 58.766 40.909 5.01 0.00 0.00 2.66
6628 16102 2.880443 ACATTCATTCAGGCCACACTT 58.120 42.857 5.01 0.00 0.00 3.16
6629 16103 2.592102 ACATTCATTCAGGCCACACT 57.408 45.000 5.01 0.00 0.00 3.55
6630 16104 2.414559 CGAACATTCATTCAGGCCACAC 60.415 50.000 5.01 0.00 0.00 3.82
6631 16105 1.811965 CGAACATTCATTCAGGCCACA 59.188 47.619 5.01 0.00 0.00 4.17
6632 16106 1.468054 GCGAACATTCATTCAGGCCAC 60.468 52.381 5.01 0.00 0.00 5.01
6633 16107 0.810648 GCGAACATTCATTCAGGCCA 59.189 50.000 5.01 0.00 0.00 5.36
6634 16108 1.098050 AGCGAACATTCATTCAGGCC 58.902 50.000 0.00 0.00 0.00 5.19
6635 16109 1.796617 GCAGCGAACATTCATTCAGGC 60.797 52.381 0.00 0.00 0.00 4.85
6636 16110 1.469703 TGCAGCGAACATTCATTCAGG 59.530 47.619 0.00 0.00 0.00 3.86
6638 16112 2.153645 AGTGCAGCGAACATTCATTCA 58.846 42.857 0.00 0.00 0.00 2.57
6639 16113 2.907910 AGTGCAGCGAACATTCATTC 57.092 45.000 0.00 0.00 0.00 2.67
6640 16114 3.119849 GGTTAGTGCAGCGAACATTCATT 60.120 43.478 11.88 0.00 34.91 2.57
6641 16115 2.420022 GGTTAGTGCAGCGAACATTCAT 59.580 45.455 11.88 0.00 34.91 2.57
6642 16116 1.804151 GGTTAGTGCAGCGAACATTCA 59.196 47.619 11.88 0.00 34.91 2.57
6643 16117 1.804151 TGGTTAGTGCAGCGAACATTC 59.196 47.619 11.88 0.00 34.91 2.67
6644 16118 1.535462 GTGGTTAGTGCAGCGAACATT 59.465 47.619 11.88 0.00 34.91 2.71
6645 16119 1.156736 GTGGTTAGTGCAGCGAACAT 58.843 50.000 11.88 0.00 34.91 2.71
6649 16123 2.345991 GGGTGGTTAGTGCAGCGA 59.654 61.111 0.00 0.00 0.00 4.93
6650 16124 2.746277 GGGGTGGTTAGTGCAGCG 60.746 66.667 0.00 0.00 0.00 5.18
6652 16126 1.303317 GGTGGGGTGGTTAGTGCAG 60.303 63.158 0.00 0.00 0.00 4.41
6653 16127 2.836187 GGGTGGGGTGGTTAGTGCA 61.836 63.158 0.00 0.00 0.00 4.57
6655 16129 1.074248 GTGGGTGGGGTGGTTAGTG 59.926 63.158 0.00 0.00 0.00 2.74
6658 16132 0.772517 TGATGTGGGTGGGGTGGTTA 60.773 55.000 0.00 0.00 0.00 2.85
6659 16133 2.088096 TGATGTGGGTGGGGTGGTT 61.088 57.895 0.00 0.00 0.00 3.67
6662 16136 2.035626 GGTGATGTGGGTGGGGTG 59.964 66.667 0.00 0.00 0.00 4.61
6664 16138 1.574526 ATCAGGTGATGTGGGTGGGG 61.575 60.000 0.00 0.00 32.68 4.96
6665 16139 0.394762 CATCAGGTGATGTGGGTGGG 60.395 60.000 11.22 0.00 45.10 4.61
6666 16140 3.179925 CATCAGGTGATGTGGGTGG 57.820 57.895 11.22 0.00 45.10 4.61
6674 16148 5.086104 AGTAACTAAACGCATCAGGTGAT 57.914 39.130 0.00 0.00 34.56 3.06
6675 16149 4.491676 GAGTAACTAAACGCATCAGGTGA 58.508 43.478 0.00 0.00 0.00 4.02
6677 16151 3.514309 AGGAGTAACTAAACGCATCAGGT 59.486 43.478 0.00 0.00 0.00 4.00
6678 16152 4.124851 AGGAGTAACTAAACGCATCAGG 57.875 45.455 0.00 0.00 0.00 3.86
6679 16153 5.063564 GGAAAGGAGTAACTAAACGCATCAG 59.936 44.000 0.00 0.00 0.00 2.90
6681 16155 4.331992 GGGAAAGGAGTAACTAAACGCATC 59.668 45.833 0.00 0.00 0.00 3.91
6682 16156 4.259356 GGGAAAGGAGTAACTAAACGCAT 58.741 43.478 0.00 0.00 0.00 4.73
6683 16157 3.667360 GGGAAAGGAGTAACTAAACGCA 58.333 45.455 0.00 0.00 0.00 5.24
6684 16158 2.669924 CGGGAAAGGAGTAACTAAACGC 59.330 50.000 0.00 0.00 0.00 4.84
6686 16160 5.144692 AGACGGGAAAGGAGTAACTAAAC 57.855 43.478 0.00 0.00 0.00 2.01
6687 16161 5.813513 AAGACGGGAAAGGAGTAACTAAA 57.186 39.130 0.00 0.00 0.00 1.85
6689 16163 5.813513 AAAAGACGGGAAAGGAGTAACTA 57.186 39.130 0.00 0.00 0.00 2.24
6690 16164 4.701651 AAAAGACGGGAAAGGAGTAACT 57.298 40.909 0.00 0.00 0.00 2.24
6724 16198 7.394016 AGAAAAGGAGCAAGAAAAAGGAAAAA 58.606 30.769 0.00 0.00 0.00 1.94
6725 16199 6.946340 AGAAAAGGAGCAAGAAAAAGGAAAA 58.054 32.000 0.00 0.00 0.00 2.29
6726 16200 6.381133 AGAGAAAAGGAGCAAGAAAAAGGAAA 59.619 34.615 0.00 0.00 0.00 3.13
6727 16201 5.893824 AGAGAAAAGGAGCAAGAAAAAGGAA 59.106 36.000 0.00 0.00 0.00 3.36
6729 16203 5.781210 AGAGAAAAGGAGCAAGAAAAAGG 57.219 39.130 0.00 0.00 0.00 3.11
6731 16205 7.877612 ACAAAAAGAGAAAAGGAGCAAGAAAAA 59.122 29.630 0.00 0.00 0.00 1.94
6734 16208 6.530019 ACAAAAAGAGAAAAGGAGCAAGAA 57.470 33.333 0.00 0.00 0.00 2.52
6735 16209 6.152661 TCAACAAAAAGAGAAAAGGAGCAAGA 59.847 34.615 0.00 0.00 0.00 3.02
6736 16210 6.332630 TCAACAAAAAGAGAAAAGGAGCAAG 58.667 36.000 0.00 0.00 0.00 4.01
6738 16212 5.913137 TCAACAAAAAGAGAAAAGGAGCA 57.087 34.783 0.00 0.00 0.00 4.26
6750 18437 8.250538 ACCATACAAAACAGTTCAACAAAAAG 57.749 30.769 0.00 0.00 0.00 2.27
6754 18441 8.608844 AAAAACCATACAAAACAGTTCAACAA 57.391 26.923 0.00 0.00 0.00 2.83
6756 18443 8.474006 AGAAAAACCATACAAAACAGTTCAAC 57.526 30.769 0.00 0.00 0.00 3.18
6757 18444 9.495572 AAAGAAAAACCATACAAAACAGTTCAA 57.504 25.926 0.00 0.00 0.00 2.69
6758 18445 9.495572 AAAAGAAAAACCATACAAAACAGTTCA 57.504 25.926 0.00 0.00 0.00 3.18
6761 18448 9.719355 AGAAAAAGAAAAACCATACAAAACAGT 57.281 25.926 0.00 0.00 0.00 3.55
6867 18554 9.695526 CATCAGGTTTTAGAAAATGTTCATCAA 57.304 29.630 0.00 0.00 36.09 2.57
6868 18555 9.076781 TCATCAGGTTTTAGAAAATGTTCATCA 57.923 29.630 0.00 0.00 36.09 3.07
6870 18557 9.696917 GTTCATCAGGTTTTAGAAAATGTTCAT 57.303 29.630 0.00 0.00 36.09 2.57
6871 18558 8.912988 AGTTCATCAGGTTTTAGAAAATGTTCA 58.087 29.630 0.00 0.00 36.09 3.18
6872 18559 9.750125 AAGTTCATCAGGTTTTAGAAAATGTTC 57.250 29.630 0.00 0.00 0.00 3.18
6909 18596 9.292846 CATCGATTTTGAAAATAAGCTCATCAA 57.707 29.630 2.71 0.00 0.00 2.57
6910 18597 8.676401 TCATCGATTTTGAAAATAAGCTCATCA 58.324 29.630 2.71 0.00 0.00 3.07
6911 18598 9.507280 TTCATCGATTTTGAAAATAAGCTCATC 57.493 29.630 2.71 0.00 30.44 2.92
6912 18599 9.294030 GTTCATCGATTTTGAAAATAAGCTCAT 57.706 29.630 2.71 0.00 35.03 2.90
6914 18601 8.902040 AGTTCATCGATTTTGAAAATAAGCTC 57.098 30.769 2.71 0.00 35.03 4.09
6915 18602 9.696917 AAAGTTCATCGATTTTGAAAATAAGCT 57.303 25.926 2.71 0.00 35.03 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.