Multiple sequence alignment - TraesCS5B01G049600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G049600 chr5B 100.000 4784 0 0 1000 5783 55264641 55269424 0.000000e+00 8835.0
1 TraesCS5B01G049600 chr5B 100.000 658 0 0 1 658 55263642 55264299 0.000000e+00 1216.0
2 TraesCS5B01G049600 chr5B 91.935 62 5 0 5542 5603 339291164 339291103 2.870000e-13 87.9
3 TraesCS5B01G049600 chr5A 90.397 2749 178 31 1000 3708 41333050 41335752 0.000000e+00 3535.0
4 TraesCS5B01G049600 chr5A 90.778 1800 119 25 3752 5540 41335752 41337515 0.000000e+00 2361.0
5 TraesCS5B01G049600 chr5A 81.262 523 31 30 162 658 41332500 41332981 1.530000e-95 361.0
6 TraesCS5B01G049600 chr5A 95.794 214 9 0 5327 5540 41340458 41340671 4.290000e-91 346.0
7 TraesCS5B01G049600 chr5A 85.000 340 35 6 5215 5540 41341439 41341776 1.200000e-86 331.0
8 TraesCS5B01G049600 chr5A 95.000 160 7 1 5610 5768 41337545 41337704 3.460000e-62 250.0
9 TraesCS5B01G049600 chr5A 80.695 259 29 7 4914 5161 41340197 41340445 1.280000e-41 182.0
10 TraesCS5B01G049600 chr5A 87.013 77 4 2 5542 5612 447544566 447544490 1.340000e-11 82.4
11 TraesCS5B01G049600 chr5D 92.280 2526 118 31 3277 5783 52245366 52247833 0.000000e+00 3513.0
12 TraesCS5B01G049600 chr5D 91.527 1428 119 2 1808 3234 52243645 52245071 0.000000e+00 1965.0
13 TraesCS5B01G049600 chr5D 83.752 517 30 25 175 658 52242213 52242708 1.910000e-119 440.0
14 TraesCS5B01G049600 chr5D 81.111 450 46 22 1401 1835 52243200 52243625 2.010000e-84 324.0
15 TraesCS5B01G049600 chr5D 81.562 320 20 21 1019 1326 52242798 52243090 1.620000e-55 228.0
16 TraesCS5B01G049600 chr6B 95.238 63 3 0 5542 5604 504603154 504603092 3.690000e-17 100.0
17 TraesCS5B01G049600 chr4A 96.610 59 2 0 5542 5600 741472555 741472613 1.330000e-16 99.0
18 TraesCS5B01G049600 chr6D 93.548 62 4 0 5542 5603 317011516 317011455 6.170000e-15 93.5
19 TraesCS5B01G049600 chr6D 91.803 61 3 1 5542 5600 86643299 86643239 3.710000e-12 84.2
20 TraesCS5B01G049600 chr1D 95.000 60 2 1 5542 5600 404066319 404066378 6.170000e-15 93.5
21 TraesCS5B01G049600 chr6A 89.552 67 3 1 5542 5604 509276956 509277022 1.340000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G049600 chr5B 55263642 55269424 5782 False 5025.500000 8835 100.0000 1 5783 2 chr5B.!!$F1 5782
1 TraesCS5B01G049600 chr5A 41332500 41341776 9276 False 1052.285714 3535 88.4180 162 5768 7 chr5A.!!$F1 5606
2 TraesCS5B01G049600 chr5D 52242213 52247833 5620 False 1294.000000 3513 86.0464 175 5783 5 chr5D.!!$F1 5608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.167251 CCGGTTTTACACGTGCATCC 59.833 55.0 17.22 10.27 0.00 3.51 F
154 155 0.167251 GGTTTTACACGTGCATCCCG 59.833 55.0 17.22 0.00 0.00 5.14 F
1295 1358 0.673644 CCATTCTTCGCCGGTCAACT 60.674 55.0 1.90 0.00 0.00 3.16 F
2537 2711 0.031585 AGTAGTCGACGCACAAAGCA 59.968 50.0 20.67 0.00 46.13 3.91 F
3136 3310 0.259938 CAGGGCCCCTAGAGCAATTT 59.740 55.0 21.43 0.00 29.64 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2057 0.393077 CCGGTAATGTAGCCCTGGAG 59.607 60.0 0.00 0.0 0.00 3.86 R
1912 2086 2.223066 ACATAGCTTCGTCTCGAACTCG 60.223 50.0 0.00 0.0 41.05 4.18 R
2947 3121 0.038067 TGCACACATGGATTTGCTGC 60.038 50.0 0.00 0.0 35.91 5.25 R
4489 4937 1.032014 TCCAACCTGAAAGCTGCAAC 58.968 50.0 1.02 0.0 0.00 4.17 R
4979 5434 0.475906 GCCTCATGGAGCCATAGGTT 59.524 55.0 18.15 0.0 34.91 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.859411 GTTCATGCATACCCGGAAAAA 57.141 42.857 0.73 0.00 0.00 1.94
21 22 3.769536 GTTCATGCATACCCGGAAAAAG 58.230 45.455 0.73 0.00 0.00 2.27
22 23 3.358111 TCATGCATACCCGGAAAAAGA 57.642 42.857 0.73 0.00 0.00 2.52
23 24 3.691575 TCATGCATACCCGGAAAAAGAA 58.308 40.909 0.73 0.00 0.00 2.52
24 25 4.082845 TCATGCATACCCGGAAAAAGAAA 58.917 39.130 0.73 0.00 0.00 2.52
25 26 4.709397 TCATGCATACCCGGAAAAAGAAAT 59.291 37.500 0.73 0.00 0.00 2.17
26 27 4.712122 TGCATACCCGGAAAAAGAAATC 57.288 40.909 0.73 0.00 0.00 2.17
27 28 3.127895 TGCATACCCGGAAAAAGAAATCG 59.872 43.478 0.73 0.00 0.00 3.34
28 29 3.488553 GCATACCCGGAAAAAGAAATCGG 60.489 47.826 0.73 0.00 40.32 4.18
29 30 2.281539 ACCCGGAAAAAGAAATCGGT 57.718 45.000 0.73 0.00 39.13 4.69
30 31 2.589720 ACCCGGAAAAAGAAATCGGTT 58.410 42.857 0.73 0.00 39.13 4.44
31 32 2.555325 ACCCGGAAAAAGAAATCGGTTC 59.445 45.455 0.73 0.00 39.13 3.62
32 33 2.554893 CCCGGAAAAAGAAATCGGTTCA 59.445 45.455 0.73 0.00 38.86 3.18
33 34 3.192633 CCCGGAAAAAGAAATCGGTTCAT 59.807 43.478 0.73 0.00 38.86 2.57
34 35 4.165779 CCGGAAAAAGAAATCGGTTCATG 58.834 43.478 0.00 0.00 38.86 3.07
35 36 4.320935 CCGGAAAAAGAAATCGGTTCATGT 60.321 41.667 0.00 0.00 38.86 3.21
36 37 4.616802 CGGAAAAAGAAATCGGTTCATGTG 59.383 41.667 0.00 0.00 38.86 3.21
37 38 5.528870 GGAAAAAGAAATCGGTTCATGTGT 58.471 37.500 0.00 0.00 38.86 3.72
38 39 5.402270 GGAAAAAGAAATCGGTTCATGTGTG 59.598 40.000 0.00 0.00 38.86 3.82
39 40 4.503741 AAAGAAATCGGTTCATGTGTGG 57.496 40.909 0.00 0.00 38.86 4.17
40 41 3.417069 AGAAATCGGTTCATGTGTGGA 57.583 42.857 0.00 0.00 38.86 4.02
41 42 3.750371 AGAAATCGGTTCATGTGTGGAA 58.250 40.909 0.00 0.00 38.86 3.53
42 43 3.502211 AGAAATCGGTTCATGTGTGGAAC 59.498 43.478 0.00 0.00 42.99 3.62
43 44 3.252215 GAAATCGGTTCATGTGTGGAACA 59.748 43.478 7.48 0.00 44.96 3.18
116 117 8.754991 TTTTCTCTACCTGTTTATTTTGTGGA 57.245 30.769 0.00 0.00 0.00 4.02
117 118 7.979444 TTCTCTACCTGTTTATTTTGTGGAG 57.021 36.000 0.00 0.00 36.30 3.86
118 119 7.074653 TCTCTACCTGTTTATTTTGTGGAGT 57.925 36.000 0.00 0.00 36.36 3.85
119 120 8.197592 TCTCTACCTGTTTATTTTGTGGAGTA 57.802 34.615 0.00 0.00 36.36 2.59
120 121 8.092687 TCTCTACCTGTTTATTTTGTGGAGTAC 58.907 37.037 0.00 0.00 36.36 2.73
121 122 7.970102 TCTACCTGTTTATTTTGTGGAGTACT 58.030 34.615 0.00 0.00 0.00 2.73
122 123 9.092338 TCTACCTGTTTATTTTGTGGAGTACTA 57.908 33.333 0.00 0.00 0.00 1.82
123 124 7.974482 ACCTGTTTATTTTGTGGAGTACTAC 57.026 36.000 0.00 0.00 0.00 2.73
124 125 7.742767 ACCTGTTTATTTTGTGGAGTACTACT 58.257 34.615 6.66 0.00 0.00 2.57
125 126 8.873144 ACCTGTTTATTTTGTGGAGTACTACTA 58.127 33.333 6.66 0.00 0.00 1.82
126 127 9.367444 CCTGTTTATTTTGTGGAGTACTACTAG 57.633 37.037 6.66 0.00 0.00 2.57
127 128 9.924650 CTGTTTATTTTGTGGAGTACTACTAGT 57.075 33.333 6.66 0.00 0.00 2.57
128 129 9.918630 TGTTTATTTTGTGGAGTACTACTAGTC 57.081 33.333 6.66 0.00 0.00 2.59
134 135 8.970859 TTTGTGGAGTACTACTAGTCTATACC 57.029 38.462 6.66 0.00 0.00 2.73
135 136 6.753180 TGTGGAGTACTACTAGTCTATACCG 58.247 44.000 6.66 0.00 0.00 4.02
136 137 6.162777 GTGGAGTACTACTAGTCTATACCGG 58.837 48.000 6.66 0.00 0.00 5.28
137 138 5.841237 TGGAGTACTACTAGTCTATACCGGT 59.159 44.000 13.98 13.98 0.00 5.28
138 139 6.327626 TGGAGTACTACTAGTCTATACCGGTT 59.672 42.308 15.04 3.05 0.00 4.44
139 140 7.147479 TGGAGTACTACTAGTCTATACCGGTTT 60.147 40.741 15.04 7.86 0.00 3.27
140 141 7.717436 GGAGTACTACTAGTCTATACCGGTTTT 59.283 40.741 15.04 3.17 0.00 2.43
141 142 9.765795 GAGTACTACTAGTCTATACCGGTTTTA 57.234 37.037 15.04 4.40 0.00 1.52
142 143 9.549078 AGTACTACTAGTCTATACCGGTTTTAC 57.451 37.037 15.04 7.27 0.00 2.01
143 144 9.326413 GTACTACTAGTCTATACCGGTTTTACA 57.674 37.037 15.04 0.00 0.00 2.41
144 145 8.214721 ACTACTAGTCTATACCGGTTTTACAC 57.785 38.462 15.04 3.41 0.00 2.90
145 146 6.124088 ACTAGTCTATACCGGTTTTACACG 57.876 41.667 15.04 5.06 0.00 4.49
146 147 5.648092 ACTAGTCTATACCGGTTTTACACGT 59.352 40.000 15.04 5.65 0.00 4.49
147 148 4.737054 AGTCTATACCGGTTTTACACGTG 58.263 43.478 15.04 15.48 0.00 4.49
148 149 3.304293 GTCTATACCGGTTTTACACGTGC 59.696 47.826 15.04 0.00 0.00 5.34
149 150 2.166821 ATACCGGTTTTACACGTGCA 57.833 45.000 15.04 0.00 0.00 4.57
150 151 2.166821 TACCGGTTTTACACGTGCAT 57.833 45.000 15.04 0.00 0.00 3.96
151 152 0.869730 ACCGGTTTTACACGTGCATC 59.130 50.000 17.22 1.89 0.00 3.91
152 153 0.167251 CCGGTTTTACACGTGCATCC 59.833 55.000 17.22 10.27 0.00 3.51
153 154 0.167251 CGGTTTTACACGTGCATCCC 59.833 55.000 17.22 8.56 0.00 3.85
154 155 0.167251 GGTTTTACACGTGCATCCCG 59.833 55.000 17.22 0.00 0.00 5.14
155 156 1.149987 GTTTTACACGTGCATCCCGA 58.850 50.000 17.22 0.00 0.00 5.14
156 157 1.532007 GTTTTACACGTGCATCCCGAA 59.468 47.619 17.22 0.00 0.00 4.30
157 158 1.434555 TTTACACGTGCATCCCGAAG 58.565 50.000 17.22 0.00 0.00 3.79
158 159 1.017177 TTACACGTGCATCCCGAAGC 61.017 55.000 17.22 0.00 0.00 3.86
159 160 3.853330 CACGTGCATCCCGAAGCG 61.853 66.667 0.82 0.00 0.00 4.68
160 161 4.373116 ACGTGCATCCCGAAGCGT 62.373 61.111 1.86 0.00 0.00 5.07
161 162 2.202690 CGTGCATCCCGAAGCGTA 60.203 61.111 0.00 0.00 0.00 4.42
162 163 1.807981 CGTGCATCCCGAAGCGTAA 60.808 57.895 0.00 0.00 0.00 3.18
163 164 1.355796 CGTGCATCCCGAAGCGTAAA 61.356 55.000 0.00 0.00 0.00 2.01
164 165 0.800012 GTGCATCCCGAAGCGTAAAA 59.200 50.000 0.00 0.00 0.00 1.52
165 166 1.083489 TGCATCCCGAAGCGTAAAAG 58.917 50.000 0.00 0.00 0.00 2.27
166 167 1.338294 TGCATCCCGAAGCGTAAAAGA 60.338 47.619 0.00 0.00 0.00 2.52
167 168 1.327764 GCATCCCGAAGCGTAAAAGAG 59.672 52.381 0.00 0.00 0.00 2.85
170 171 2.680577 TCCCGAAGCGTAAAAGAGAAC 58.319 47.619 0.00 0.00 0.00 3.01
232 233 3.995048 GGAGGAGTAGCACAGTGTAAAAC 59.005 47.826 1.61 0.00 0.00 2.43
239 245 6.448006 AGTAGCACAGTGTAAAACTAGTCTG 58.552 40.000 1.61 0.24 36.83 3.51
274 280 1.204704 TGAGGTGTCGCGAATCTCAAT 59.795 47.619 25.00 8.42 32.36 2.57
348 359 1.377333 CCCTCCTCCTCGTTTTGGC 60.377 63.158 0.00 0.00 0.00 4.52
354 365 1.291877 CTCCTCGTTTTGGCCGTGAG 61.292 60.000 0.00 0.12 0.00 3.51
522 551 4.778143 AACCACCGCCGCATCCTC 62.778 66.667 0.00 0.00 0.00 3.71
580 622 3.679824 TTTTCTTCGTCCTCTCCTTCC 57.320 47.619 0.00 0.00 0.00 3.46
581 623 2.606751 TTCTTCGTCCTCTCCTTCCT 57.393 50.000 0.00 0.00 0.00 3.36
582 624 2.131776 TCTTCGTCCTCTCCTTCCTC 57.868 55.000 0.00 0.00 0.00 3.71
606 648 3.964875 AACTGGCAAGCAACCGCG 61.965 61.111 0.00 0.00 45.49 6.46
1016 1058 2.825264 ATAGCGCCTTCCTCTGGC 59.175 61.111 2.29 0.00 46.42 4.85
1191 1240 1.541670 GGCTGAACAACCCGTGAGTTA 60.542 52.381 0.00 0.00 0.00 2.24
1204 1253 1.209747 GTGAGTTATTCGCCCCTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
1207 1256 2.170817 GAGTTATTCGCCCCTTCCTTCT 59.829 50.000 0.00 0.00 0.00 2.85
1208 1257 2.170817 AGTTATTCGCCCCTTCCTTCTC 59.829 50.000 0.00 0.00 0.00 2.87
1295 1358 0.673644 CCATTCTTCGCCGGTCAACT 60.674 55.000 1.90 0.00 0.00 3.16
1320 1383 2.554462 GGCTTCAGTTTTCTCCACTTCC 59.446 50.000 0.00 0.00 0.00 3.46
1326 1389 2.104963 AGTTTTCTCCACTTCCTCGCTT 59.895 45.455 0.00 0.00 0.00 4.68
1329 1392 1.633774 TCTCCACTTCCTCGCTTCTT 58.366 50.000 0.00 0.00 0.00 2.52
1333 1396 4.954202 TCTCCACTTCCTCGCTTCTTATTA 59.046 41.667 0.00 0.00 0.00 0.98
1334 1397 5.067936 TCTCCACTTCCTCGCTTCTTATTAG 59.932 44.000 0.00 0.00 0.00 1.73
1338 1409 6.763610 CCACTTCCTCGCTTCTTATTAGATTT 59.236 38.462 0.00 0.00 0.00 2.17
1339 1410 7.254590 CCACTTCCTCGCTTCTTATTAGATTTG 60.255 40.741 0.00 0.00 0.00 2.32
1397 1495 1.038130 AACTGCTCGATAGGCTCCGT 61.038 55.000 8.68 0.00 34.09 4.69
1421 1519 7.848051 CGTAGATAATCTTGTTGCAATCTTGTC 59.152 37.037 0.59 0.87 0.00 3.18
1454 1559 6.129457 CGTGTAGCTTAAACAACAAAAGATGC 60.129 38.462 0.00 0.00 0.00 3.91
1456 1561 6.917477 TGTAGCTTAAACAACAAAAGATGCAG 59.083 34.615 0.00 0.00 29.86 4.41
1484 1596 2.956333 ACCAAGTACAGAAAACCAAGCC 59.044 45.455 0.00 0.00 0.00 4.35
1491 1603 1.067354 CAGAAAACCAAGCCATGAGCC 60.067 52.381 0.00 0.00 45.47 4.70
1492 1604 1.203100 AGAAAACCAAGCCATGAGCCT 60.203 47.619 0.00 0.00 45.47 4.58
1493 1605 2.041620 AGAAAACCAAGCCATGAGCCTA 59.958 45.455 0.00 0.00 45.47 3.93
1494 1606 2.834638 AAACCAAGCCATGAGCCTAT 57.165 45.000 0.00 0.00 45.47 2.57
1495 1607 2.062971 AACCAAGCCATGAGCCTATG 57.937 50.000 0.00 0.00 45.47 2.23
1496 1608 1.216064 ACCAAGCCATGAGCCTATGA 58.784 50.000 0.00 0.00 45.47 2.15
1497 1609 1.779092 ACCAAGCCATGAGCCTATGAT 59.221 47.619 0.00 0.00 45.47 2.45
1498 1610 2.224719 ACCAAGCCATGAGCCTATGATC 60.225 50.000 0.00 0.00 45.47 2.92
1499 1611 2.224695 CCAAGCCATGAGCCTATGATCA 60.225 50.000 0.00 0.00 45.47 2.92
1500 1612 3.483421 CAAGCCATGAGCCTATGATCAA 58.517 45.455 0.00 0.00 40.87 2.57
1562 1674 7.056635 CCAAATATTCCTCATCCTAACACAGT 58.943 38.462 0.00 0.00 0.00 3.55
1593 1705 4.974721 CAACTGCCTGCCCGGGTT 62.975 66.667 24.63 2.83 0.00 4.11
1594 1706 4.218686 AACTGCCTGCCCGGGTTT 62.219 61.111 24.63 1.13 0.00 3.27
1599 1713 2.672996 CCTGCCCGGGTTTCTGTG 60.673 66.667 24.63 4.51 0.00 3.66
1602 1716 2.114411 GCCCGGGTTTCTGTGGAA 59.886 61.111 24.63 0.00 0.00 3.53
1607 1721 1.676006 CCGGGTTTCTGTGGAATATGC 59.324 52.381 0.00 0.00 0.00 3.14
1617 1731 3.634504 TGTGGAATATGCAAGGCTGATT 58.365 40.909 0.00 0.00 0.00 2.57
1667 1781 7.308782 GCAGTTGCCATTACCACTATATATC 57.691 40.000 0.00 0.00 34.31 1.63
1670 1784 8.097038 CAGTTGCCATTACCACTATATATCTGT 58.903 37.037 0.00 0.00 0.00 3.41
1671 1785 8.097038 AGTTGCCATTACCACTATATATCTGTG 58.903 37.037 10.24 10.24 0.00 3.66
1672 1786 7.790782 TGCCATTACCACTATATATCTGTGA 57.209 36.000 16.01 2.45 33.95 3.58
1674 1788 8.825774 TGCCATTACCACTATATATCTGTGATT 58.174 33.333 16.01 8.28 33.95 2.57
1675 1789 9.672673 GCCATTACCACTATATATCTGTGATTT 57.327 33.333 16.01 6.57 33.95 2.17
1729 1843 4.220821 CACTGACCCACTAACACTATGTCT 59.779 45.833 0.00 0.00 0.00 3.41
1738 1852 6.072673 CCACTAACACTATGTCTTTGGTTTCC 60.073 42.308 0.00 0.00 0.00 3.13
1836 2010 6.767456 ACAAATTCCATGGCTTTGTCATTTA 58.233 32.000 26.74 0.00 38.38 1.40
1841 2015 5.263599 TCCATGGCTTTGTCATTTATCTGT 58.736 37.500 6.96 0.00 0.00 3.41
1860 2034 2.159240 TGTAGTTGGAGTATGAGCTGCG 60.159 50.000 0.00 0.00 0.00 5.18
1876 2050 1.315981 TGCGACAAGAGCTCTCCGAT 61.316 55.000 26.69 11.60 35.28 4.18
1883 2057 3.252400 CAAGAGCTCTCCGATATCATGC 58.748 50.000 18.55 0.00 0.00 4.06
1994 2168 4.072131 CAAGGAAAACCTTTCCGAGATCA 58.928 43.478 11.52 0.00 43.23 2.92
1996 2170 3.328050 AGGAAAACCTTTCCGAGATCACT 59.672 43.478 11.52 0.00 43.23 3.41
2053 2227 1.123861 TGGCAGCTTCAGAGTCCAGT 61.124 55.000 0.00 0.00 0.00 4.00
2086 2260 0.037790 ACAGCAGTCTCGAGAAAGCC 60.038 55.000 27.27 13.23 0.00 4.35
2167 2341 2.185350 CACCTGAGCGGCGAAGAT 59.815 61.111 12.98 0.00 35.61 2.40
2220 2394 2.048127 GCGAAGGGAGCACGAGTT 60.048 61.111 0.00 0.00 34.19 3.01
2225 2399 0.608640 AAGGGAGCACGAGTTCGAAT 59.391 50.000 8.72 0.00 43.02 3.34
2272 2446 0.792031 GGCTGAAAAGGCATTTTGCG 59.208 50.000 14.66 5.64 46.21 4.85
2437 2611 3.272574 TGCAGATTGAAGGACAGGATC 57.727 47.619 0.00 0.00 0.00 3.36
2452 2626 0.671251 GGATCGGTTCTCTGCTCGAT 59.329 55.000 0.00 0.00 43.75 3.59
2479 2653 2.565391 TGAACATCTCCGAGGTTTGCTA 59.435 45.455 0.00 0.00 36.68 3.49
2504 2678 5.540337 TCTGACAGAAGAAAGGAAGCTAAGA 59.460 40.000 1.64 0.00 0.00 2.10
2527 2701 2.776330 CTCTCTTCGCAAGTAGTCGAC 58.224 52.381 7.70 7.70 36.03 4.20
2533 2707 1.272784 CGCAAGTAGTCGACGCACAA 61.273 55.000 20.67 0.84 0.00 3.33
2537 2711 0.031585 AGTAGTCGACGCACAAAGCA 59.968 50.000 20.67 0.00 46.13 3.91
2584 2758 4.314121 AGTCAAAACTCAGTGATGAGCTC 58.686 43.478 6.82 6.82 39.42 4.09
2613 2787 3.933955 CTGAAGATTGAGAGCCACTTGAG 59.066 47.826 0.00 0.00 0.00 3.02
2617 2791 4.032310 AGATTGAGAGCCACTTGAGAGAT 58.968 43.478 0.00 0.00 0.00 2.75
2618 2792 4.470664 AGATTGAGAGCCACTTGAGAGATT 59.529 41.667 0.00 0.00 0.00 2.40
2633 2807 7.605691 ACTTGAGAGATTTATTGGAACTGTCTG 59.394 37.037 0.00 0.00 0.00 3.51
2647 2821 5.875359 GGAACTGTCTGTATTAAGGGAAGTG 59.125 44.000 0.00 0.00 0.00 3.16
2786 2960 6.094048 GCTCAAGTATGAAAATGACCAGCTTA 59.906 38.462 0.00 0.00 34.49 3.09
2818 2992 2.887152 AGGATCAAAACTGGTTCAGCAC 59.113 45.455 0.00 0.00 34.37 4.40
2845 3019 3.992427 AGGAATTCGACTTGGTTAACGAC 59.008 43.478 0.00 0.00 34.59 4.34
2848 3022 2.772568 TCGACTTGGTTAACGACGAA 57.227 45.000 0.00 0.00 0.00 3.85
2869 3043 4.457834 ACTTACGATGTTCAGGGAGAAG 57.542 45.455 0.00 0.00 36.78 2.85
2875 3049 1.507140 TGTTCAGGGAGAAGGTGTGT 58.493 50.000 0.00 0.00 36.78 3.72
2908 3082 3.072915 TGCTGATCTTGGAGTTCAAAGGA 59.927 43.478 0.00 0.00 34.56 3.36
2945 3119 1.306825 AGCTGTCTGGATGAGGCCT 60.307 57.895 3.86 3.86 0.00 5.19
2947 3121 0.747283 GCTGTCTGGATGAGGCCTTG 60.747 60.000 6.77 0.00 0.00 3.61
2978 3152 3.441222 CCATGTGTGCAAGCAAGAGATAA 59.559 43.478 0.00 0.00 0.00 1.75
2998 3172 1.321474 TTGGGCTGACTGAAAGCTTG 58.679 50.000 0.00 0.00 40.64 4.01
2999 3173 0.473755 TGGGCTGACTGAAAGCTTGA 59.526 50.000 0.00 0.00 40.64 3.02
3010 3184 3.149196 TGAAAGCTTGACTTCCATGTCC 58.851 45.455 0.00 0.00 37.75 4.02
3011 3185 2.206576 AAGCTTGACTTCCATGTCCC 57.793 50.000 0.00 0.00 36.21 4.46
3090 3264 2.358003 GAGAACAGCAGCGCCACT 60.358 61.111 2.29 0.00 0.00 4.00
3094 3268 3.466791 AACAGCAGCGCCACTCACT 62.467 57.895 2.29 0.00 0.00 3.41
3109 3283 3.004839 CACTCACTGACGGTCATATAGGG 59.995 52.174 11.86 6.47 0.00 3.53
3121 3295 3.117745 TCATATAGGGGATGATGCAGGG 58.882 50.000 0.00 0.00 0.00 4.45
3136 3310 0.259938 CAGGGCCCCTAGAGCAATTT 59.740 55.000 21.43 0.00 29.64 1.82
3156 3330 5.450818 TTTACCCTTGTTAGCATGGAGAT 57.549 39.130 12.40 1.74 41.07 2.75
3269 3443 2.036992 CCCCAATGTTTTGCTGTTGCTA 59.963 45.455 0.00 0.00 40.48 3.49
3362 3792 1.526464 GCATGTTGCCGTTCCAAAAAG 59.474 47.619 0.00 0.00 37.42 2.27
3431 3871 1.392589 ATTTCCTAATGCACTGGCCG 58.607 50.000 0.00 0.00 40.13 6.13
3437 3877 2.490115 CCTAATGCACTGGCCGTTTTTA 59.510 45.455 0.00 0.00 40.13 1.52
3440 3880 3.676291 ATGCACTGGCCGTTTTTAATT 57.324 38.095 0.00 0.00 40.13 1.40
3609 4049 0.662970 TTGCGTCGCTTCATTTTGCC 60.663 50.000 19.50 0.00 0.00 4.52
3622 4062 5.815233 TCATTTTGCCTTTGGATTGGTTA 57.185 34.783 0.00 0.00 0.00 2.85
3637 4077 6.443849 TGGATTGGTTAGAGTTCTAAGGTGAT 59.556 38.462 1.93 0.00 38.94 3.06
3641 4081 4.870991 GGTTAGAGTTCTAAGGTGATGTGC 59.129 45.833 1.93 0.00 38.94 4.57
3643 4083 6.127423 GGTTAGAGTTCTAAGGTGATGTGCTA 60.127 42.308 1.93 0.00 38.94 3.49
3645 4085 5.971763 AGAGTTCTAAGGTGATGTGCTAAG 58.028 41.667 0.00 0.00 0.00 2.18
3695 4135 7.265599 TGGGACTTATGTAAAGGAAGAATGA 57.734 36.000 0.00 0.00 0.00 2.57
3797 4237 0.746659 GCTTGTTTTGCAGTCCACCT 59.253 50.000 0.00 0.00 0.00 4.00
3801 4241 4.359706 CTTGTTTTGCAGTCCACCTAAAC 58.640 43.478 0.50 0.50 0.00 2.01
3802 4242 3.626930 TGTTTTGCAGTCCACCTAAACT 58.373 40.909 7.62 0.00 31.25 2.66
3803 4243 3.630312 TGTTTTGCAGTCCACCTAAACTC 59.370 43.478 7.62 0.00 31.25 3.01
3807 4247 4.098914 TGCAGTCCACCTAAACTCAAAT 57.901 40.909 0.00 0.00 0.00 2.32
3808 4248 5.235850 TGCAGTCCACCTAAACTCAAATA 57.764 39.130 0.00 0.00 0.00 1.40
3809 4249 5.626142 TGCAGTCCACCTAAACTCAAATAA 58.374 37.500 0.00 0.00 0.00 1.40
3810 4250 6.065374 TGCAGTCCACCTAAACTCAAATAAA 58.935 36.000 0.00 0.00 0.00 1.40
3811 4251 6.547880 TGCAGTCCACCTAAACTCAAATAAAA 59.452 34.615 0.00 0.00 0.00 1.52
3812 4252 7.068839 TGCAGTCCACCTAAACTCAAATAAAAA 59.931 33.333 0.00 0.00 0.00 1.94
3813 4253 8.088365 GCAGTCCACCTAAACTCAAATAAAAAT 58.912 33.333 0.00 0.00 0.00 1.82
3814 4254 9.410556 CAGTCCACCTAAACTCAAATAAAAATG 57.589 33.333 0.00 0.00 0.00 2.32
3815 4255 9.362151 AGTCCACCTAAACTCAAATAAAAATGA 57.638 29.630 0.00 0.00 0.00 2.57
3816 4256 9.626045 GTCCACCTAAACTCAAATAAAAATGAG 57.374 33.333 1.46 1.46 46.69 2.90
3817 4257 8.802267 TCCACCTAAACTCAAATAAAAATGAGG 58.198 33.333 7.59 0.00 45.80 3.86
3818 4258 8.802267 CCACCTAAACTCAAATAAAAATGAGGA 58.198 33.333 7.59 0.00 45.80 3.71
3847 4287 6.213397 TGGAATCTAGACAAGATGGAGTGAAA 59.787 38.462 0.00 0.00 44.56 2.69
3881 4321 3.874383 TGGGACTTCTCCATTTGTTGA 57.126 42.857 0.00 0.00 38.52 3.18
3882 4322 3.486383 TGGGACTTCTCCATTTGTTGAC 58.514 45.455 0.00 0.00 38.52 3.18
3883 4323 3.138283 TGGGACTTCTCCATTTGTTGACT 59.862 43.478 0.00 0.00 38.52 3.41
3890 4330 9.220767 GACTTCTCCATTTGTTGACTAACTATT 57.779 33.333 0.00 0.00 37.68 1.73
3961 4401 1.732259 CAGGTTGATGTACTTGGCGAC 59.268 52.381 0.00 0.00 0.00 5.19
3989 4429 3.438087 CGAGACCCTCTTACGTGTTCTTA 59.562 47.826 0.00 0.00 0.00 2.10
4036 4476 1.949799 ACTCTCCTGTCCTGAAGCAT 58.050 50.000 0.00 0.00 0.00 3.79
4162 4604 5.506686 TCACAATCGTTTTCCACAATTCA 57.493 34.783 0.00 0.00 0.00 2.57
4204 4646 4.635765 TGAATGTAGCTCATAAGGTGTTGC 59.364 41.667 0.00 0.00 35.48 4.17
4447 4895 4.813161 ACTTGTATCATATCAGTGTGCAGC 59.187 41.667 0.00 0.00 0.00 5.25
4469 4917 6.311445 CAGCTTGTAGTTGTCGATACAAATCT 59.689 38.462 9.83 7.58 46.84 2.40
4488 4936 2.629137 TCTGTAGGGTTCGCTTGTGTTA 59.371 45.455 0.00 0.00 0.00 2.41
4489 4937 2.993899 CTGTAGGGTTCGCTTGTGTTAG 59.006 50.000 0.00 0.00 0.00 2.34
4492 4940 2.218603 AGGGTTCGCTTGTGTTAGTTG 58.781 47.619 0.00 0.00 0.00 3.16
4493 4941 1.334689 GGGTTCGCTTGTGTTAGTTGC 60.335 52.381 0.00 0.00 0.00 4.17
4511 4959 3.153369 TGCAGCTTTCAGGTTGGATTA 57.847 42.857 0.00 0.00 0.00 1.75
4601 5049 5.294552 GCTTGTTATAGTCCCAGCTTTACTG 59.705 44.000 3.22 0.00 46.77 2.74
4630 5085 5.823353 GACTGTGTATAAGTCAGTCCTAGC 58.177 45.833 16.04 0.00 46.85 3.42
4648 5103 5.593095 TCCTAGCTTGTATCGTATTGACTGT 59.407 40.000 0.00 0.00 0.00 3.55
4658 5113 9.292846 TGTATCGTATTGACTGTGTTTATGTAC 57.707 33.333 0.00 0.00 0.00 2.90
4659 5114 9.512435 GTATCGTATTGACTGTGTTTATGTACT 57.488 33.333 0.00 0.00 0.00 2.73
4733 5188 4.025480 CAGTTTTCTGCAGTCCATTTTTGC 60.025 41.667 14.67 0.00 41.24 3.68
4734 5189 4.122046 GTTTTCTGCAGTCCATTTTTGCT 58.878 39.130 14.67 0.00 38.60 3.91
4738 5193 3.255642 TCTGCAGTCCATTTTTGCTAACC 59.744 43.478 14.67 0.00 38.60 2.85
4813 5268 5.803967 GCCAAATTTGTCTCATCATCTCAAC 59.196 40.000 16.73 0.00 0.00 3.18
4912 5367 9.566432 TCCAGCCAACAACAAAATATTAAAATT 57.434 25.926 0.00 0.00 0.00 1.82
4955 5410 5.876357 ACAGACTTGTATTGGTACCATTGT 58.124 37.500 17.17 6.32 35.25 2.71
4974 5429 7.336427 ACCATTGTTGCATCAAGAAAAGAAAAA 59.664 29.630 15.02 0.00 30.80 1.94
4975 5430 7.853929 CCATTGTTGCATCAAGAAAAGAAAAAG 59.146 33.333 15.02 0.00 30.80 2.27
4976 5431 6.907206 TGTTGCATCAAGAAAAGAAAAAGG 57.093 33.333 0.00 0.00 0.00 3.11
4977 5432 6.638610 TGTTGCATCAAGAAAAGAAAAAGGA 58.361 32.000 0.00 0.00 0.00 3.36
4978 5433 7.102346 TGTTGCATCAAGAAAAGAAAAAGGAA 58.898 30.769 0.00 0.00 0.00 3.36
4979 5434 7.605691 TGTTGCATCAAGAAAAGAAAAAGGAAA 59.394 29.630 0.00 0.00 0.00 3.13
4984 5439 9.816354 CATCAAGAAAAGAAAAAGGAAAACCTA 57.184 29.630 0.00 0.00 0.00 3.08
4989 5444 6.747414 AAAGAAAAAGGAAAACCTATGGCT 57.253 33.333 0.00 0.00 0.00 4.75
5020 5475 1.133792 AGGACCCCATATTCGCTTTGG 60.134 52.381 0.00 0.00 0.00 3.28
5065 5520 3.063452 ACAAAGTACACACAAGACTTGCG 59.937 43.478 15.24 8.41 33.75 4.85
5074 5529 1.933853 ACAAGACTTGCGCCGATTATC 59.066 47.619 15.24 0.00 0.00 1.75
5212 5670 1.399440 CTGGATTTGTGAGGCGACATG 59.601 52.381 0.00 0.00 0.00 3.21
5236 5694 1.125093 TCCAGGTCACCATGGTTCGT 61.125 55.000 16.84 10.31 37.84 3.85
5237 5695 0.673644 CCAGGTCACCATGGTTCGTC 60.674 60.000 16.84 5.40 0.00 4.20
5305 5766 6.321181 TGTGAATCAGGACAATTAATTAGGCC 59.679 38.462 12.22 12.22 0.00 5.19
5340 5801 7.306953 CCAAGTACTACTAGTGTCTTGAGTTC 58.693 42.308 23.17 9.74 40.43 3.01
5341 5802 6.724694 AGTACTACTAGTGTCTTGAGTTCG 57.275 41.667 5.39 0.00 0.00 3.95
5342 5803 6.229733 AGTACTACTAGTGTCTTGAGTTCGT 58.770 40.000 5.39 0.00 0.00 3.85
5343 5804 5.610235 ACTACTAGTGTCTTGAGTTCGTC 57.390 43.478 5.39 0.00 0.00 4.20
5400 5867 6.368243 CGATGAATATGAAGAGGAAGGATGTG 59.632 42.308 0.00 0.00 0.00 3.21
5481 5948 2.938756 GCTGCTGCCTCCATATGGTATC 60.939 54.545 21.28 11.38 36.34 2.24
5540 6007 5.537300 TCATGAGTTCTACCTAGATTGGC 57.463 43.478 0.00 0.00 31.40 4.52
5672 6139 3.958798 TGACCTGGATAGTTAGCAGGTAC 59.041 47.826 0.00 0.00 45.28 3.34
5680 6147 5.279056 GGATAGTTAGCAGGTACTTAGCAGG 60.279 48.000 7.31 0.00 34.60 4.85
5736 6203 4.952335 AGAACTTCTTGGCCTTATTGGATG 59.048 41.667 3.32 0.00 38.35 3.51
5741 6208 5.708736 TCTTGGCCTTATTGGATGAGTAA 57.291 39.130 3.32 0.00 38.35 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.442273 TCTTTTTCCGGGTATGCATGAAC 59.558 43.478 10.16 0.00 0.00 3.18
1 2 3.691575 TCTTTTTCCGGGTATGCATGAA 58.308 40.909 10.16 0.34 0.00 2.57
2 3 3.358111 TCTTTTTCCGGGTATGCATGA 57.642 42.857 10.16 0.00 0.00 3.07
3 4 4.448537 TTTCTTTTTCCGGGTATGCATG 57.551 40.909 10.16 0.00 0.00 4.06
5 6 3.127895 CGATTTCTTTTTCCGGGTATGCA 59.872 43.478 0.00 0.00 0.00 3.96
6 7 3.488553 CCGATTTCTTTTTCCGGGTATGC 60.489 47.826 0.00 0.00 36.81 3.14
7 8 3.692593 ACCGATTTCTTTTTCCGGGTATG 59.307 43.478 0.00 0.00 43.98 2.39
8 9 3.959293 ACCGATTTCTTTTTCCGGGTAT 58.041 40.909 0.00 0.00 43.98 2.73
9 10 3.421919 ACCGATTTCTTTTTCCGGGTA 57.578 42.857 0.00 0.00 43.98 3.69
10 11 2.281539 ACCGATTTCTTTTTCCGGGT 57.718 45.000 0.00 0.00 43.98 5.28
11 12 2.554893 TGAACCGATTTCTTTTTCCGGG 59.445 45.455 0.00 0.00 43.98 5.73
12 13 3.907894 TGAACCGATTTCTTTTTCCGG 57.092 42.857 0.00 0.00 45.09 5.14
13 14 4.616802 CACATGAACCGATTTCTTTTTCCG 59.383 41.667 0.00 0.00 34.97 4.30
14 15 5.402270 CACACATGAACCGATTTCTTTTTCC 59.598 40.000 0.00 0.00 34.97 3.13
15 16 5.402270 CCACACATGAACCGATTTCTTTTTC 59.598 40.000 0.00 0.00 34.97 2.29
16 17 5.068460 TCCACACATGAACCGATTTCTTTTT 59.932 36.000 0.00 0.00 34.97 1.94
17 18 4.582656 TCCACACATGAACCGATTTCTTTT 59.417 37.500 0.00 0.00 34.97 2.27
18 19 4.141287 TCCACACATGAACCGATTTCTTT 58.859 39.130 0.00 0.00 34.97 2.52
19 20 3.750371 TCCACACATGAACCGATTTCTT 58.250 40.909 0.00 0.00 34.97 2.52
20 21 3.417069 TCCACACATGAACCGATTTCT 57.583 42.857 0.00 0.00 34.97 2.52
21 22 3.252215 TGTTCCACACATGAACCGATTTC 59.748 43.478 0.00 0.00 41.08 2.17
22 23 3.218453 TGTTCCACACATGAACCGATTT 58.782 40.909 0.00 0.00 41.08 2.17
23 24 2.857483 TGTTCCACACATGAACCGATT 58.143 42.857 0.00 0.00 41.08 3.34
24 25 2.559698 TGTTCCACACATGAACCGAT 57.440 45.000 0.00 0.00 41.08 4.18
25 26 2.559698 ATGTTCCACACATGAACCGA 57.440 45.000 0.00 0.00 45.12 4.69
26 27 3.641437 AAATGTTCCACACATGAACCG 57.359 42.857 0.00 0.00 46.23 4.44
90 91 9.191479 TCCACAAAATAAACAGGTAGAGAAAAA 57.809 29.630 0.00 0.00 0.00 1.94
91 92 8.754991 TCCACAAAATAAACAGGTAGAGAAAA 57.245 30.769 0.00 0.00 0.00 2.29
92 93 7.996644 ACTCCACAAAATAAACAGGTAGAGAAA 59.003 33.333 0.00 0.00 0.00 2.52
93 94 7.514721 ACTCCACAAAATAAACAGGTAGAGAA 58.485 34.615 0.00 0.00 0.00 2.87
94 95 7.074653 ACTCCACAAAATAAACAGGTAGAGA 57.925 36.000 0.00 0.00 0.00 3.10
95 96 8.095169 AGTACTCCACAAAATAAACAGGTAGAG 58.905 37.037 0.00 0.00 0.00 2.43
96 97 7.970102 AGTACTCCACAAAATAAACAGGTAGA 58.030 34.615 0.00 0.00 0.00 2.59
97 98 9.148104 GTAGTACTCCACAAAATAAACAGGTAG 57.852 37.037 0.00 0.00 0.00 3.18
98 99 8.873144 AGTAGTACTCCACAAAATAAACAGGTA 58.127 33.333 0.00 0.00 0.00 3.08
99 100 7.742767 AGTAGTACTCCACAAAATAAACAGGT 58.257 34.615 0.00 0.00 0.00 4.00
100 101 9.367444 CTAGTAGTACTCCACAAAATAAACAGG 57.633 37.037 5.96 0.00 0.00 4.00
101 102 9.924650 ACTAGTAGTACTCCACAAAATAAACAG 57.075 33.333 5.96 0.00 0.00 3.16
102 103 9.918630 GACTAGTAGTACTCCACAAAATAAACA 57.081 33.333 5.96 0.00 0.00 2.83
108 109 9.401058 GGTATAGACTAGTAGTACTCCACAAAA 57.599 37.037 5.96 0.00 0.00 2.44
109 110 7.712639 CGGTATAGACTAGTAGTACTCCACAAA 59.287 40.741 5.96 0.00 0.00 2.83
110 111 7.212976 CGGTATAGACTAGTAGTACTCCACAA 58.787 42.308 5.96 0.00 0.00 3.33
111 112 6.239430 CCGGTATAGACTAGTAGTACTCCACA 60.239 46.154 5.96 0.00 0.00 4.17
112 113 6.162777 CCGGTATAGACTAGTAGTACTCCAC 58.837 48.000 5.96 0.00 0.00 4.02
113 114 5.841237 ACCGGTATAGACTAGTAGTACTCCA 59.159 44.000 4.49 0.00 0.00 3.86
114 115 6.353404 ACCGGTATAGACTAGTAGTACTCC 57.647 45.833 4.49 0.00 0.00 3.85
115 116 8.669946 AAAACCGGTATAGACTAGTAGTACTC 57.330 38.462 8.00 0.00 0.00 2.59
116 117 9.549078 GTAAAACCGGTATAGACTAGTAGTACT 57.451 37.037 8.00 8.14 0.00 2.73
117 118 9.326413 TGTAAAACCGGTATAGACTAGTAGTAC 57.674 37.037 8.00 0.00 0.00 2.73
118 119 9.326413 GTGTAAAACCGGTATAGACTAGTAGTA 57.674 37.037 8.00 0.00 0.00 1.82
119 120 7.011482 CGTGTAAAACCGGTATAGACTAGTAGT 59.989 40.741 8.00 1.37 0.00 2.73
120 121 7.011482 ACGTGTAAAACCGGTATAGACTAGTAG 59.989 40.741 8.00 3.11 0.00 2.57
121 122 6.821665 ACGTGTAAAACCGGTATAGACTAGTA 59.178 38.462 8.00 0.00 0.00 1.82
122 123 5.648092 ACGTGTAAAACCGGTATAGACTAGT 59.352 40.000 8.00 0.00 0.00 2.57
123 124 5.967674 CACGTGTAAAACCGGTATAGACTAG 59.032 44.000 8.00 4.47 0.00 2.57
124 125 5.676079 GCACGTGTAAAACCGGTATAGACTA 60.676 44.000 18.38 0.00 0.00 2.59
125 126 4.737054 CACGTGTAAAACCGGTATAGACT 58.263 43.478 8.00 1.22 0.00 3.24
126 127 3.304293 GCACGTGTAAAACCGGTATAGAC 59.696 47.826 18.38 12.30 0.00 2.59
127 128 3.056962 TGCACGTGTAAAACCGGTATAGA 60.057 43.478 18.38 0.00 0.00 1.98
128 129 3.252400 TGCACGTGTAAAACCGGTATAG 58.748 45.455 18.38 0.00 0.00 1.31
129 130 3.309961 TGCACGTGTAAAACCGGTATA 57.690 42.857 18.38 0.78 0.00 1.47
130 131 2.166821 TGCACGTGTAAAACCGGTAT 57.833 45.000 18.38 1.99 0.00 2.73
131 132 2.067766 GATGCACGTGTAAAACCGGTA 58.932 47.619 18.38 0.00 0.00 4.02
132 133 0.869730 GATGCACGTGTAAAACCGGT 59.130 50.000 18.38 0.00 0.00 5.28
133 134 0.167251 GGATGCACGTGTAAAACCGG 59.833 55.000 18.38 0.00 0.00 5.28
134 135 0.167251 GGGATGCACGTGTAAAACCG 59.833 55.000 18.38 0.00 0.00 4.44
135 136 0.167251 CGGGATGCACGTGTAAAACC 59.833 55.000 18.38 16.52 0.00 3.27
136 137 1.149987 TCGGGATGCACGTGTAAAAC 58.850 50.000 18.38 8.65 0.00 2.43
137 138 1.801771 CTTCGGGATGCACGTGTAAAA 59.198 47.619 18.38 0.95 0.00 1.52
138 139 1.434555 CTTCGGGATGCACGTGTAAA 58.565 50.000 18.38 3.68 0.00 2.01
139 140 1.017177 GCTTCGGGATGCACGTGTAA 61.017 55.000 18.38 6.47 0.00 2.41
140 141 1.447140 GCTTCGGGATGCACGTGTA 60.447 57.895 18.38 14.09 0.00 2.90
141 142 2.742372 GCTTCGGGATGCACGTGT 60.742 61.111 18.38 0.00 0.00 4.49
142 143 3.853330 CGCTTCGGGATGCACGTG 61.853 66.667 12.28 12.28 0.00 4.49
143 144 2.495366 TTACGCTTCGGGATGCACGT 62.495 55.000 7.24 0.00 37.53 4.49
144 145 1.355796 TTTACGCTTCGGGATGCACG 61.356 55.000 7.24 0.00 0.00 5.34
145 146 0.800012 TTTTACGCTTCGGGATGCAC 59.200 50.000 7.24 0.00 0.00 4.57
146 147 1.083489 CTTTTACGCTTCGGGATGCA 58.917 50.000 7.24 0.00 0.00 3.96
147 148 1.327764 CTCTTTTACGCTTCGGGATGC 59.672 52.381 0.00 0.00 0.00 3.91
148 149 2.888594 TCTCTTTTACGCTTCGGGATG 58.111 47.619 0.00 0.00 0.00 3.51
149 150 3.259902 GTTCTCTTTTACGCTTCGGGAT 58.740 45.455 0.00 0.00 0.00 3.85
150 151 2.611224 GGTTCTCTTTTACGCTTCGGGA 60.611 50.000 0.00 0.00 0.00 5.14
151 152 1.730612 GGTTCTCTTTTACGCTTCGGG 59.269 52.381 0.00 0.00 0.00 5.14
152 153 1.730612 GGGTTCTCTTTTACGCTTCGG 59.269 52.381 0.00 0.00 0.00 4.30
153 154 1.730612 GGGGTTCTCTTTTACGCTTCG 59.269 52.381 0.00 0.00 0.00 3.79
154 155 2.774687 TGGGGTTCTCTTTTACGCTTC 58.225 47.619 0.00 0.00 0.00 3.86
155 156 2.882761 GTTGGGGTTCTCTTTTACGCTT 59.117 45.455 0.00 0.00 0.00 4.68
156 157 2.158726 TGTTGGGGTTCTCTTTTACGCT 60.159 45.455 0.00 0.00 0.00 5.07
157 158 2.031420 GTGTTGGGGTTCTCTTTTACGC 60.031 50.000 0.00 0.00 0.00 4.42
158 159 2.222445 CGTGTTGGGGTTCTCTTTTACG 59.778 50.000 0.00 0.00 0.00 3.18
159 160 3.002965 CACGTGTTGGGGTTCTCTTTTAC 59.997 47.826 7.58 0.00 0.00 2.01
160 161 3.207778 CACGTGTTGGGGTTCTCTTTTA 58.792 45.455 7.58 0.00 0.00 1.52
161 162 2.021457 CACGTGTTGGGGTTCTCTTTT 58.979 47.619 7.58 0.00 0.00 2.27
162 163 1.675552 CACGTGTTGGGGTTCTCTTT 58.324 50.000 7.58 0.00 0.00 2.52
163 164 0.818040 GCACGTGTTGGGGTTCTCTT 60.818 55.000 18.38 0.00 0.00 2.85
164 165 1.227853 GCACGTGTTGGGGTTCTCT 60.228 57.895 18.38 0.00 0.00 3.10
165 166 1.227853 AGCACGTGTTGGGGTTCTC 60.228 57.895 18.38 0.00 0.00 2.87
166 167 1.525995 CAGCACGTGTTGGGGTTCT 60.526 57.895 23.11 3.38 0.00 3.01
167 168 0.889186 ATCAGCACGTGTTGGGGTTC 60.889 55.000 28.67 5.04 0.00 3.62
170 171 2.981560 GCATCAGCACGTGTTGGGG 61.982 63.158 28.67 21.66 41.58 4.96
205 206 0.175302 CTGTGCTACTCCTCCTGCTG 59.825 60.000 0.00 0.00 0.00 4.41
208 209 1.261480 ACACTGTGCTACTCCTCCTG 58.739 55.000 7.90 0.00 0.00 3.86
209 210 2.901338 TACACTGTGCTACTCCTCCT 57.099 50.000 7.90 0.00 0.00 3.69
210 211 3.955650 TTTACACTGTGCTACTCCTCC 57.044 47.619 7.90 0.00 0.00 4.30
211 212 4.884247 AGTTTTACACTGTGCTACTCCTC 58.116 43.478 7.90 0.00 32.83 3.71
217 218 5.221362 TGCAGACTAGTTTTACACTGTGCTA 60.221 40.000 7.90 0.07 35.97 3.49
232 233 3.119101 ACGTACCCTTTGATGCAGACTAG 60.119 47.826 0.00 0.00 0.00 2.57
239 245 1.338769 ACCTCACGTACCCTTTGATGC 60.339 52.381 0.00 0.00 0.00 3.91
299 309 4.838486 GGCGGTCGCTGTCTCTCG 62.838 72.222 15.04 0.00 41.60 4.04
348 359 4.530857 GTCGGGGATGCCTCACGG 62.531 72.222 2.19 0.00 0.00 4.94
354 365 2.034999 TGGTTTGTCGGGGATGCC 59.965 61.111 0.00 0.00 0.00 4.40
356 367 1.677633 GGGTGGTTTGTCGGGGATG 60.678 63.158 0.00 0.00 0.00 3.51
357 368 2.761160 GGGTGGTTTGTCGGGGAT 59.239 61.111 0.00 0.00 0.00 3.85
358 369 3.572222 GGGGTGGTTTGTCGGGGA 61.572 66.667 0.00 0.00 0.00 4.81
478 507 3.414700 GCTCCGCTGGTCGTGTTG 61.415 66.667 0.00 0.00 36.19 3.33
519 548 4.862823 GACGGGGAGGGAGGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
520 549 4.862823 GGACGGGGAGGGAGGGAG 62.863 77.778 0.00 0.00 0.00 4.30
568 610 1.834896 GGAAAGGAGGAAGGAGAGGAC 59.165 57.143 0.00 0.00 0.00 3.85
576 618 1.202927 TGCCAGTTGGAAAGGAGGAAG 60.203 52.381 1.45 0.00 37.39 3.46
579 621 1.251251 CTTGCCAGTTGGAAAGGAGG 58.749 55.000 10.60 0.00 45.40 4.30
639 681 4.459089 GCTCTGGCTGTCCCGTCC 62.459 72.222 0.00 0.00 35.87 4.79
1016 1058 2.730672 CGAAAAGAGTGCGGCGGAG 61.731 63.158 9.78 0.00 0.00 4.63
1091 1140 4.749310 CGAGAAGCTGTGCCGCCT 62.749 66.667 0.00 0.00 0.00 5.52
1100 1149 3.816524 CGCCGAGGACGAGAAGCT 61.817 66.667 0.00 0.00 42.66 3.74
1191 1240 1.290134 AAGAGAAGGAAGGGGCGAAT 58.710 50.000 0.00 0.00 0.00 3.34
1243 1303 1.737199 TTCTCGGAAGGGGGAGAAAA 58.263 50.000 1.29 0.00 44.04 2.29
1310 1373 1.633774 AAGAAGCGAGGAAGTGGAGA 58.366 50.000 0.00 0.00 0.00 3.71
1338 1409 9.685828 GCTATTTGCCCGTTAATTAATTAATCA 57.314 29.630 20.60 14.05 33.76 2.57
1374 1445 3.321497 GGAGCCTATCGAGCAGTTAATG 58.679 50.000 0.00 0.00 0.00 1.90
1397 1495 8.049117 AGGACAAGATTGCAACAAGATTATCTA 58.951 33.333 0.00 0.00 0.00 1.98
1454 1559 9.226606 TGGTTTTCTGTACTTGGTTATTATCTG 57.773 33.333 0.00 0.00 0.00 2.90
1484 1596 5.795972 AGTCAGATTGATCATAGGCTCATG 58.204 41.667 0.00 0.00 0.00 3.07
1491 1603 8.396390 CAGGTTTTGAAGTCAGATTGATCATAG 58.604 37.037 0.00 0.00 0.00 2.23
1492 1604 7.884877 ACAGGTTTTGAAGTCAGATTGATCATA 59.115 33.333 0.00 0.00 0.00 2.15
1493 1605 6.718454 ACAGGTTTTGAAGTCAGATTGATCAT 59.282 34.615 0.00 0.00 0.00 2.45
1494 1606 6.064060 ACAGGTTTTGAAGTCAGATTGATCA 58.936 36.000 0.00 0.00 0.00 2.92
1495 1607 6.205464 TGACAGGTTTTGAAGTCAGATTGATC 59.795 38.462 0.00 0.00 36.20 2.92
1496 1608 6.064060 TGACAGGTTTTGAAGTCAGATTGAT 58.936 36.000 0.00 0.00 36.20 2.57
1497 1609 5.436175 TGACAGGTTTTGAAGTCAGATTGA 58.564 37.500 0.00 0.00 36.20 2.57
1498 1610 5.756195 TGACAGGTTTTGAAGTCAGATTG 57.244 39.130 0.00 0.00 36.20 2.67
1499 1611 5.474876 GGATGACAGGTTTTGAAGTCAGATT 59.525 40.000 0.00 0.00 43.39 2.40
1500 1612 5.006386 GGATGACAGGTTTTGAAGTCAGAT 58.994 41.667 0.00 0.00 43.39 2.90
1591 1703 3.445096 AGCCTTGCATATTCCACAGAAAC 59.555 43.478 0.00 0.00 35.09 2.78
1592 1704 3.444742 CAGCCTTGCATATTCCACAGAAA 59.555 43.478 0.00 0.00 35.09 2.52
1593 1705 3.018856 CAGCCTTGCATATTCCACAGAA 58.981 45.455 0.00 0.00 36.15 3.02
1594 1706 2.239402 TCAGCCTTGCATATTCCACAGA 59.761 45.455 0.00 0.00 0.00 3.41
1599 1713 2.288640 GCCAATCAGCCTTGCATATTCC 60.289 50.000 0.00 0.00 0.00 3.01
1602 1716 1.961394 CAGCCAATCAGCCTTGCATAT 59.039 47.619 0.00 0.00 0.00 1.78
1607 1721 0.535335 AATGCAGCCAATCAGCCTTG 59.465 50.000 0.00 0.00 0.00 3.61
1665 1779 9.305555 AGCAAGGCAAATATATAAATCACAGAT 57.694 29.630 0.00 0.00 0.00 2.90
1667 1781 9.188588 CAAGCAAGGCAAATATATAAATCACAG 57.811 33.333 0.00 0.00 0.00 3.66
1711 1825 4.349930 ACCAAAGACATAGTGTTAGTGGGT 59.650 41.667 9.93 0.00 32.35 4.51
1778 1898 8.342634 CGAAAGGTCGGATCATTATTACAAAAT 58.657 33.333 0.00 0.00 43.81 1.82
1836 2010 4.202202 GCAGCTCATACTCCAACTACAGAT 60.202 45.833 0.00 0.00 0.00 2.90
1841 2015 2.099263 GTCGCAGCTCATACTCCAACTA 59.901 50.000 0.00 0.00 0.00 2.24
1860 2034 4.484236 CATGATATCGGAGAGCTCTTGTC 58.516 47.826 19.36 10.16 43.63 3.18
1876 2050 2.101640 TGTAGCCCTGGAGCATGATA 57.898 50.000 0.00 0.00 34.23 2.15
1883 2057 0.393077 CCGGTAATGTAGCCCTGGAG 59.607 60.000 0.00 0.00 0.00 3.86
1912 2086 2.223066 ACATAGCTTCGTCTCGAACTCG 60.223 50.000 0.00 0.00 41.05 4.18
2053 2227 2.930019 CTGTGGGGAGGGAGCACA 60.930 66.667 0.00 0.00 0.00 4.57
2156 2330 1.007271 CCGTGATATCTTCGCCGCT 60.007 57.895 3.98 0.00 0.00 5.52
2167 2341 3.185594 CAGACTTCAAAAACGCCGTGATA 59.814 43.478 0.00 0.00 0.00 2.15
2220 2394 2.094752 TCAGTCGTCTGATGCAATTCGA 60.095 45.455 8.34 0.00 44.58 3.71
2272 2446 0.807496 GCAACACAGCTCCATCCTTC 59.193 55.000 0.00 0.00 0.00 3.46
2361 2535 5.148502 AGCCCTCTTTCCTCGAGATAATTA 58.851 41.667 15.71 0.00 0.00 1.40
2437 2611 1.996292 TTTCATCGAGCAGAGAACCG 58.004 50.000 0.00 0.00 0.00 4.44
2452 2626 4.286297 ACCTCGGAGATGTTCATTTTCA 57.714 40.909 6.58 0.00 29.13 2.69
2479 2653 4.906747 AGCTTCCTTTCTTCTGTCAGAT 57.093 40.909 2.68 0.00 0.00 2.90
2504 2678 2.414824 CGACTACTTGCGAAGAGAGCTT 60.415 50.000 0.00 0.00 36.96 3.74
2513 2687 1.441515 GTGCGTCGACTACTTGCGA 60.442 57.895 14.70 0.00 0.00 5.10
2515 2689 0.856641 TTTGTGCGTCGACTACTTGC 59.143 50.000 14.70 9.68 0.00 4.01
2527 2701 2.419895 CGCGACATTGCTTTGTGCG 61.420 57.895 0.00 15.50 46.63 5.34
2558 2732 1.865865 TCACTGAGTTTTGACTCGGC 58.134 50.000 13.73 0.00 44.71 5.54
2584 2758 4.050553 GGCTCTCAATCTTCAGATCTTCG 58.949 47.826 0.00 0.00 32.75 3.79
2617 2791 8.607713 TCCCTTAATACAGACAGTTCCAATAAA 58.392 33.333 0.00 0.00 0.00 1.40
2618 2792 8.153221 TCCCTTAATACAGACAGTTCCAATAA 57.847 34.615 0.00 0.00 0.00 1.40
2633 2807 4.765339 ACTGCCAAACACTTCCCTTAATAC 59.235 41.667 0.00 0.00 0.00 1.89
2641 2815 4.846779 TTCATAACTGCCAAACACTTCC 57.153 40.909 0.00 0.00 0.00 3.46
2647 2821 7.814107 TCAATCTGATTTTCATAACTGCCAAAC 59.186 33.333 0.00 0.00 0.00 2.93
2757 2931 7.201767 GCTGGTCATTTTCATACTTGAGCTTAT 60.202 37.037 0.00 0.00 37.46 1.73
2786 2960 8.423906 ACCAGTTTTGATCCTACGATAGATAT 57.576 34.615 0.00 0.00 41.38 1.63
2794 2968 3.125316 GCTGAACCAGTTTTGATCCTACG 59.875 47.826 0.00 0.00 33.43 3.51
2818 2992 2.991250 ACCAAGTCGAATTCCTCATGG 58.009 47.619 13.58 13.58 0.00 3.66
2845 3019 3.119602 TCTCCCTGAACATCGTAAGTTCG 60.120 47.826 10.87 7.21 46.34 3.95
2848 3022 3.195825 CCTTCTCCCTGAACATCGTAAGT 59.804 47.826 0.00 0.00 39.48 2.24
2945 3119 1.605968 GCACACATGGATTTGCTGCAA 60.606 47.619 11.69 11.69 32.00 4.08
2947 3121 0.038067 TGCACACATGGATTTGCTGC 60.038 50.000 0.00 0.00 35.91 5.25
2978 3152 1.891150 CAAGCTTTCAGTCAGCCCAAT 59.109 47.619 0.00 0.00 38.09 3.16
2998 3172 2.206576 AAGCAAGGGACATGGAAGTC 57.793 50.000 0.00 0.00 37.80 3.01
2999 3173 2.242043 CAAAGCAAGGGACATGGAAGT 58.758 47.619 0.00 0.00 0.00 3.01
3061 3235 4.240888 CTGCTGTTCTCTTCATTTCTCGA 58.759 43.478 0.00 0.00 0.00 4.04
3064 3238 2.740981 CGCTGCTGTTCTCTTCATTTCT 59.259 45.455 0.00 0.00 0.00 2.52
3090 3264 2.176148 TCCCCTATATGACCGTCAGTGA 59.824 50.000 7.41 0.00 0.00 3.41
3094 3268 3.536075 TCATCCCCTATATGACCGTCA 57.464 47.619 3.10 3.10 0.00 4.35
3109 3283 2.134630 CTAGGGGCCCTGCATCATCC 62.135 65.000 35.70 0.26 34.61 3.51
3121 3295 1.495148 AGGGTAAATTGCTCTAGGGGC 59.505 52.381 0.00 0.00 0.00 5.80
3136 3310 6.101150 ACAATATCTCCATGCTAACAAGGGTA 59.899 38.462 0.00 0.00 35.29 3.69
3156 3330 8.817100 CGAAATCACTGTATGCTTTAGACAATA 58.183 33.333 0.00 0.00 28.63 1.90
3431 3871 8.279800 GTCAACCTGCACCAAATAATTAAAAAC 58.720 33.333 0.00 0.00 0.00 2.43
3437 3877 6.245408 TCTAGTCAACCTGCACCAAATAATT 58.755 36.000 0.00 0.00 0.00 1.40
3440 3880 4.901197 TCTAGTCAACCTGCACCAAATA 57.099 40.909 0.00 0.00 0.00 1.40
3609 4049 7.119846 CACCTTAGAACTCTAACCAATCCAAAG 59.880 40.741 0.00 0.00 34.92 2.77
3622 4062 5.625656 GCTTAGCACATCACCTTAGAACTCT 60.626 44.000 0.00 0.00 0.00 3.24
3637 4077 4.935352 ACTTGGAATTTTGCTTAGCACA 57.065 36.364 6.34 0.00 38.71 4.57
3807 4247 9.838339 GTCTAGATTCCAGATTCCTCATTTTTA 57.162 33.333 0.00 0.00 0.00 1.52
3808 4248 8.331740 TGTCTAGATTCCAGATTCCTCATTTTT 58.668 33.333 0.00 0.00 0.00 1.94
3809 4249 7.865820 TGTCTAGATTCCAGATTCCTCATTTT 58.134 34.615 0.00 0.00 0.00 1.82
3810 4250 7.443302 TGTCTAGATTCCAGATTCCTCATTT 57.557 36.000 0.00 0.00 0.00 2.32
3811 4251 7.346698 TCTTGTCTAGATTCCAGATTCCTCATT 59.653 37.037 0.00 0.00 0.00 2.57
3812 4252 6.843333 TCTTGTCTAGATTCCAGATTCCTCAT 59.157 38.462 0.00 0.00 0.00 2.90
3813 4253 6.197903 TCTTGTCTAGATTCCAGATTCCTCA 58.802 40.000 0.00 0.00 0.00 3.86
3814 4254 6.723298 TCTTGTCTAGATTCCAGATTCCTC 57.277 41.667 0.00 0.00 0.00 3.71
3815 4255 6.043012 CCATCTTGTCTAGATTCCAGATTCCT 59.957 42.308 0.00 0.00 41.78 3.36
3816 4256 6.042552 TCCATCTTGTCTAGATTCCAGATTCC 59.957 42.308 0.00 0.00 41.78 3.01
3817 4257 7.060383 TCCATCTTGTCTAGATTCCAGATTC 57.940 40.000 0.00 0.00 41.78 2.52
3818 4258 6.614906 ACTCCATCTTGTCTAGATTCCAGATT 59.385 38.462 0.00 0.00 41.78 2.40
3819 4259 6.041865 CACTCCATCTTGTCTAGATTCCAGAT 59.958 42.308 0.00 0.00 41.78 2.90
3847 4287 9.768215 TGGAGAAGTCCCATTTAGATTTAAAAT 57.232 29.630 0.00 0.00 43.15 1.82
3921 4361 9.311916 CAACCTGAATCACATTACAAAAAGAAA 57.688 29.630 0.00 0.00 0.00 2.52
3930 4370 7.849804 AGTACATCAACCTGAATCACATTAC 57.150 36.000 0.00 0.00 0.00 1.89
4162 4604 1.215647 GAATCTCGGTCACCTGCGT 59.784 57.895 0.00 0.00 0.00 5.24
4425 4873 5.055144 AGCTGCACACTGATATGATACAAG 58.945 41.667 1.02 0.00 0.00 3.16
4447 4895 7.582435 ACAGATTTGTATCGACAACTACAAG 57.418 36.000 8.79 2.29 45.29 3.16
4469 4917 2.366266 ACTAACACAAGCGAACCCTACA 59.634 45.455 0.00 0.00 0.00 2.74
4488 4936 1.035139 CCAACCTGAAAGCTGCAACT 58.965 50.000 1.02 0.00 0.00 3.16
4489 4937 1.032014 TCCAACCTGAAAGCTGCAAC 58.968 50.000 1.02 0.00 0.00 4.17
4492 4940 3.181483 CCATAATCCAACCTGAAAGCTGC 60.181 47.826 0.00 0.00 0.00 5.25
4493 4941 3.382546 CCCATAATCCAACCTGAAAGCTG 59.617 47.826 0.00 0.00 0.00 4.24
4601 5049 6.015027 ACTGACTTATACACAGTCACTGAC 57.985 41.667 13.14 0.38 44.66 3.51
4630 5085 8.869897 ACATAAACACAGTCAATACGATACAAG 58.130 33.333 0.00 0.00 0.00 3.16
4661 5116 9.720769 ACTGCACTAGTTACAACTTATACAAAT 57.279 29.630 0.00 0.00 40.37 2.32
4693 5148 2.257207 ACTGCACTAGTAGCCCTGAAA 58.743 47.619 12.71 0.00 38.04 2.69
4733 5188 7.611213 ACAATTCATACTTCTTTCCGGTTAG 57.389 36.000 0.00 0.00 0.00 2.34
4734 5189 9.675464 AATACAATTCATACTTCTTTCCGGTTA 57.325 29.630 0.00 0.00 0.00 2.85
4813 5268 5.793817 TCATGAGTTTACATATCATCCCCG 58.206 41.667 0.00 0.00 31.38 5.73
4922 5377 6.367969 ACCAATACAAGTCTGTCGAATTACAC 59.632 38.462 0.00 0.00 36.96 2.90
4930 5385 4.182693 TGGTACCAATACAAGTCTGTCG 57.817 45.455 13.60 0.00 36.96 4.35
4955 5410 8.450180 GTTTTCCTTTTTCTTTTCTTGATGCAA 58.550 29.630 0.00 0.00 0.00 4.08
4974 5429 6.225103 CCTCATGGAGCCATAGGTTTTCCT 62.225 50.000 0.93 0.00 44.38 3.36
4975 5430 3.217626 CTCATGGAGCCATAGGTTTTCC 58.782 50.000 0.93 0.00 35.79 3.13
4976 5431 3.217626 CCTCATGGAGCCATAGGTTTTC 58.782 50.000 0.93 0.00 34.91 2.29
4977 5432 2.687914 GCCTCATGGAGCCATAGGTTTT 60.688 50.000 18.15 0.00 34.91 2.43
4978 5433 1.133668 GCCTCATGGAGCCATAGGTTT 60.134 52.381 18.15 0.00 34.91 3.27
4979 5434 0.475906 GCCTCATGGAGCCATAGGTT 59.524 55.000 18.15 0.00 34.91 3.50
4989 5444 2.692368 GGGTCCTGGCCTCATGGA 60.692 66.667 3.32 3.62 34.57 3.41
5001 5456 1.133915 TCCAAAGCGAATATGGGGTCC 60.134 52.381 0.00 0.00 34.89 4.46
5020 5475 1.609072 GCACCTCACCCTTTTGACTTC 59.391 52.381 0.00 0.00 0.00 3.01
5065 5520 2.625790 ACCTCTCTGACTGATAATCGGC 59.374 50.000 0.00 0.00 0.00 5.54
5074 5529 7.043059 GCGATAAAATAAAGACCTCTCTGACTG 60.043 40.741 0.00 0.00 0.00 3.51
5138 5595 7.390996 TCCGTCTATTGACTAATCCTAGCTAAG 59.609 40.741 5.76 0.00 40.86 2.18
5190 5648 1.278985 TGTCGCCTCACAAATCCAGAT 59.721 47.619 0.00 0.00 0.00 2.90
5212 5670 0.471617 CCATGGTGACCTGGATCCTC 59.528 60.000 14.23 2.63 34.24 3.71
5236 5694 2.088950 GGGAACGAAGAATTGACCGA 57.911 50.000 0.00 0.00 0.00 4.69
5340 5801 1.095600 TCATCTTCCTCAGGACGACG 58.904 55.000 1.02 0.00 32.86 5.12
5341 5802 2.096248 AGTCATCTTCCTCAGGACGAC 58.904 52.381 1.02 3.00 32.86 4.34
5342 5803 2.095461 CAGTCATCTTCCTCAGGACGA 58.905 52.381 1.60 1.60 34.54 4.20
5343 5804 2.095461 TCAGTCATCTTCCTCAGGACG 58.905 52.381 0.00 0.00 33.84 4.79
5530 5997 1.415659 CAGAGGGAGTGCCAATCTAGG 59.584 57.143 2.50 0.00 32.33 3.02
5540 6007 9.757227 CTCTTATATTTCTTTACAGAGGGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
5576 6043 4.015764 ACTCCCTCCGTAAAGAACTAGTC 58.984 47.826 0.00 0.00 0.00 2.59
5581 6048 5.904362 TTACTACTCCCTCCGTAAAGAAC 57.096 43.478 0.00 0.00 0.00 3.01
5672 6139 5.084519 TGATATGGTACTACCCCTGCTAAG 58.915 45.833 2.59 0.00 37.50 2.18
5680 6147 8.908903 CATCTTAGATCTGATATGGTACTACCC 58.091 40.741 5.18 0.00 37.50 3.69
5759 6226 4.698201 TTCACTGTGATCCTGTGGTTTA 57.302 40.909 11.86 0.00 41.79 2.01
5760 6227 3.576078 TTCACTGTGATCCTGTGGTTT 57.424 42.857 11.86 0.00 41.79 3.27
5761 6228 3.480470 CTTTCACTGTGATCCTGTGGTT 58.520 45.455 11.86 0.00 41.79 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.