Multiple sequence alignment - TraesCS5B01G048300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G048300 chr5B 100.000 2197 0 0 1 2197 54507656 54509852 0.000000e+00 4058.0
1 TraesCS5B01G048300 chr5B 87.750 751 50 24 653 1393 54549128 54549846 0.000000e+00 839.0
2 TraesCS5B01G048300 chr5B 83.737 867 77 31 653 1516 54859918 54860723 0.000000e+00 761.0
3 TraesCS5B01G048300 chr5B 86.000 750 43 19 649 1393 54709943 54710635 0.000000e+00 747.0
4 TraesCS5B01G048300 chr5B 100.000 393 0 0 2486 2878 54510141 54510533 0.000000e+00 726.0
5 TraesCS5B01G048300 chr5B 82.777 749 96 20 653 1376 54830736 54831476 3.130000e-179 638.0
6 TraesCS5B01G048300 chr5B 93.893 393 23 1 2486 2878 247806709 247806318 2.470000e-165 592.0
7 TraesCS5B01G048300 chr5B 89.647 425 30 6 1091 1514 54850241 54850652 1.960000e-146 529.0
8 TraesCS5B01G048300 chr5B 88.235 51 6 0 2110 2160 327850478 327850428 8.610000e-06 62.1
9 TraesCS5B01G048300 chr5D 89.314 1619 119 25 1 1608 51636508 51638083 0.000000e+00 1982.0
10 TraesCS5B01G048300 chr5D 87.600 871 64 21 653 1514 51851933 51852768 0.000000e+00 970.0
11 TraesCS5B01G048300 chr5D 88.016 751 49 25 653 1393 51674925 51675644 0.000000e+00 850.0
12 TraesCS5B01G048300 chr5D 84.245 914 76 41 653 1561 51860660 51861510 0.000000e+00 828.0
13 TraesCS5B01G048300 chr5D 86.152 751 47 18 649 1393 51697980 51698679 0.000000e+00 758.0
14 TraesCS5B01G048300 chr5D 83.359 637 103 3 20 655 487270112 487270746 1.150000e-163 586.0
15 TraesCS5B01G048300 chr5D 76.190 462 50 33 1621 2042 51638601 51639042 3.790000e-44 189.0
16 TraesCS5B01G048300 chr5D 92.000 50 3 1 652 701 51846805 51846853 5.150000e-08 69.4
17 TraesCS5B01G048300 chr5A 88.638 1461 118 28 1 1441 40627971 40629403 0.000000e+00 1735.0
18 TraesCS5B01G048300 chr5A 86.980 745 54 26 653 1382 40684341 40685057 0.000000e+00 798.0
19 TraesCS5B01G048300 chr5A 86.351 718 37 23 649 1360 40812946 40813608 0.000000e+00 726.0
20 TraesCS5B01G048300 chr5A 87.738 473 37 10 1043 1514 40925393 40925845 1.520000e-147 532.0
21 TraesCS5B01G048300 chr5A 83.988 331 33 12 644 966 40925038 40925356 1.680000e-77 300.0
22 TraesCS5B01G048300 chr5A 82.353 289 39 11 1734 2015 40630198 40630481 1.030000e-59 241.0
23 TraesCS5B01G048300 chr5A 86.885 61 1 5 2105 2160 568325966 568326024 8.610000e-06 62.1
24 TraesCS5B01G048300 chr4B 96.164 391 15 0 2488 2878 122271940 122272330 8.700000e-180 640.0
25 TraesCS5B01G048300 chr2D 84.056 646 99 4 19 660 604075056 604074411 1.130000e-173 619.0
26 TraesCS5B01G048300 chr2D 84.839 620 88 6 18 635 638304933 638305548 1.130000e-173 619.0
27 TraesCS5B01G048300 chr2D 83.943 629 94 6 22 649 429082295 429081673 1.910000e-166 595.0
28 TraesCS5B01G048300 chr2D 93.681 364 16 1 2486 2849 627624091 627624447 3.260000e-149 538.0
29 TraesCS5B01G048300 chr3B 95.526 380 17 0 2499 2878 248007605 248007226 2.450000e-170 608.0
30 TraesCS5B01G048300 chr3B 96.875 32 0 1 2111 2142 23363356 23363386 5.000000e-03 52.8
31 TraesCS5B01G048300 chr7D 83.333 648 102 6 10 655 145910056 145910699 6.870000e-166 593.0
32 TraesCS5B01G048300 chr7D 83.333 636 102 4 16 650 461202130 461201498 4.130000e-163 584.0
33 TraesCS5B01G048300 chr6D 83.048 643 103 6 19 659 291218804 291218166 1.920000e-161 579.0
34 TraesCS5B01G048300 chr3D 94.086 372 14 1 2486 2849 89553981 89554352 2.500000e-155 558.0
35 TraesCS5B01G048300 chr7A 91.771 401 21 3 2486 2878 664530849 664531245 5.420000e-152 547.0
36 TraesCS5B01G048300 chr3A 93.298 373 16 2 2486 2849 574315267 574314895 2.520000e-150 542.0
37 TraesCS5B01G048300 chr3A 85.714 63 6 3 2101 2160 546416905 546416967 2.390000e-06 63.9
38 TraesCS5B01G048300 chr4D 91.521 401 17 4 2486 2878 213336690 213337081 1.170000e-148 536.0
39 TraesCS5B01G048300 chr1B 91.067 403 21 6 2486 2878 327418557 327418160 5.460000e-147 531.0
40 TraesCS5B01G048300 chr6B 84.848 66 6 4 2112 2175 368303377 368303314 2.390000e-06 63.9
41 TraesCS5B01G048300 chr7B 94.737 38 1 1 2102 2138 729079286 729079323 1.110000e-04 58.4
42 TraesCS5B01G048300 chr7B 94.737 38 1 1 2102 2138 729146811 729146848 1.110000e-04 58.4
43 TraesCS5B01G048300 chr6A 100.000 30 0 0 2109 2138 592186866 592186895 4.010000e-04 56.5
44 TraesCS5B01G048300 chr1D 100.000 30 0 0 2109 2138 480382252 480382281 4.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G048300 chr5B 54507656 54510533 2877 False 2392.0 4058 100.0000 1 2878 2 chr5B.!!$F6 2877
1 TraesCS5B01G048300 chr5B 54549128 54549846 718 False 839.0 839 87.7500 653 1393 1 chr5B.!!$F1 740
2 TraesCS5B01G048300 chr5B 54859918 54860723 805 False 761.0 761 83.7370 653 1516 1 chr5B.!!$F5 863
3 TraesCS5B01G048300 chr5B 54709943 54710635 692 False 747.0 747 86.0000 649 1393 1 chr5B.!!$F2 744
4 TraesCS5B01G048300 chr5B 54830736 54831476 740 False 638.0 638 82.7770 653 1376 1 chr5B.!!$F3 723
5 TraesCS5B01G048300 chr5D 51636508 51639042 2534 False 1085.5 1982 82.7520 1 2042 2 chr5D.!!$F7 2041
6 TraesCS5B01G048300 chr5D 51851933 51852768 835 False 970.0 970 87.6000 653 1514 1 chr5D.!!$F4 861
7 TraesCS5B01G048300 chr5D 51674925 51675644 719 False 850.0 850 88.0160 653 1393 1 chr5D.!!$F1 740
8 TraesCS5B01G048300 chr5D 51860660 51861510 850 False 828.0 828 84.2450 653 1561 1 chr5D.!!$F5 908
9 TraesCS5B01G048300 chr5D 51697980 51698679 699 False 758.0 758 86.1520 649 1393 1 chr5D.!!$F2 744
10 TraesCS5B01G048300 chr5D 487270112 487270746 634 False 586.0 586 83.3590 20 655 1 chr5D.!!$F6 635
11 TraesCS5B01G048300 chr5A 40627971 40630481 2510 False 988.0 1735 85.4955 1 2015 2 chr5A.!!$F4 2014
12 TraesCS5B01G048300 chr5A 40684341 40685057 716 False 798.0 798 86.9800 653 1382 1 chr5A.!!$F1 729
13 TraesCS5B01G048300 chr5A 40812946 40813608 662 False 726.0 726 86.3510 649 1360 1 chr5A.!!$F2 711
14 TraesCS5B01G048300 chr5A 40925038 40925845 807 False 416.0 532 85.8630 644 1514 2 chr5A.!!$F5 870
15 TraesCS5B01G048300 chr2D 604074411 604075056 645 True 619.0 619 84.0560 19 660 1 chr2D.!!$R2 641
16 TraesCS5B01G048300 chr2D 638304933 638305548 615 False 619.0 619 84.8390 18 635 1 chr2D.!!$F2 617
17 TraesCS5B01G048300 chr2D 429081673 429082295 622 True 595.0 595 83.9430 22 649 1 chr2D.!!$R1 627
18 TraesCS5B01G048300 chr7D 145910056 145910699 643 False 593.0 593 83.3330 10 655 1 chr7D.!!$F1 645
19 TraesCS5B01G048300 chr7D 461201498 461202130 632 True 584.0 584 83.3330 16 650 1 chr7D.!!$R1 634
20 TraesCS5B01G048300 chr6D 291218166 291218804 638 True 579.0 579 83.0480 19 659 1 chr6D.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 547 0.100682 GTCGGCTGCTCGTTCTATCA 59.899 55.0 0.0 0.0 0.0 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2910 0.616679 TGGAGGTAAGGGGGAAGACG 60.617 60.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.809684 GCAAGGCGACTAGGAAAAGT 58.190 50.000 0.00 0.00 42.68 2.66
74 75 2.376109 AGTTTTCCTCGCCTCGATCTA 58.624 47.619 0.00 0.00 34.61 1.98
179 187 3.524826 TCCGGCTAGTAGATAGGTAGGA 58.475 50.000 0.00 0.00 31.55 2.94
232 242 1.291877 GGCAGCGCTTCTTCTTCGAA 61.292 55.000 7.50 0.00 0.00 3.71
265 275 1.836802 GCTCCAATCCTCCTCAAGTCT 59.163 52.381 0.00 0.00 0.00 3.24
481 491 4.717877 TCCCGACTATTATCGACAAGGTA 58.282 43.478 0.00 0.00 45.13 3.08
491 501 1.002502 GACAAGGTAAGGCCGGCTT 60.003 57.895 28.56 18.19 43.70 4.35
514 524 2.904178 TATGAGAGGGGCGACAGCGA 62.904 60.000 0.00 0.00 46.35 4.93
534 544 2.483745 CGTCGGCTGCTCGTTCTA 59.516 61.111 0.00 0.00 0.00 2.10
535 545 1.064296 CGTCGGCTGCTCGTTCTAT 59.936 57.895 0.00 0.00 0.00 1.98
536 546 0.930742 CGTCGGCTGCTCGTTCTATC 60.931 60.000 0.00 0.00 0.00 2.08
537 547 0.100682 GTCGGCTGCTCGTTCTATCA 59.899 55.000 0.00 0.00 0.00 2.15
539 549 0.101399 CGGCTGCTCGTTCTATCAGT 59.899 55.000 0.00 0.00 0.00 3.41
547 558 3.785486 CTCGTTCTATCAGTGGCAATGA 58.215 45.455 20.74 20.74 0.00 2.57
549 560 4.769688 TCGTTCTATCAGTGGCAATGATT 58.230 39.130 31.95 17.68 38.36 2.57
564 575 2.577606 TGATTGTTCGGTGGTCCATT 57.422 45.000 0.00 0.00 0.00 3.16
565 576 3.704800 TGATTGTTCGGTGGTCCATTA 57.295 42.857 0.00 0.00 0.00 1.90
591 602 9.977762 AACCTCGACGTAATTTTTATTATGTTC 57.022 29.630 0.00 0.00 36.64 3.18
617 628 4.037089 GGTGTTTTGTACTTCCGGTGAATT 59.963 41.667 0.00 0.00 0.00 2.17
622 633 7.701501 TGTTTTGTACTTCCGGTGAATTTTTAC 59.298 33.333 0.00 0.00 0.00 2.01
626 639 7.364200 TGTACTTCCGGTGAATTTTTACAATG 58.636 34.615 0.00 0.00 0.00 2.82
635 648 7.975616 CGGTGAATTTTTACAATGGATCTGATT 59.024 33.333 0.00 0.00 0.00 2.57
701 722 1.745653 GCTCCAGGCCTTATCAACAAC 59.254 52.381 0.00 0.00 34.27 3.32
706 727 3.320541 CCAGGCCTTATCAACAACACAAA 59.679 43.478 0.00 0.00 0.00 2.83
707 728 4.549458 CAGGCCTTATCAACAACACAAAG 58.451 43.478 0.00 0.00 0.00 2.77
906 957 4.114997 GGCCGGTGCACATTTCCG 62.115 66.667 20.43 12.61 43.30 4.30
985 1043 3.822940 AGCCTCGTATACAAGAGCTAGT 58.177 45.455 3.32 0.00 33.39 2.57
1032 1091 3.634283 GCTTACTAGCAGTAGCACTAGC 58.366 50.000 0.00 0.00 46.95 3.42
1033 1092 3.066900 GCTTACTAGCAGTAGCACTAGCA 59.933 47.826 9.88 0.00 46.95 3.49
1034 1093 4.602995 CTTACTAGCAGTAGCACTAGCAC 58.397 47.826 0.00 0.00 45.49 4.40
1428 1622 2.169832 TAGGCGCCAGAGAATAATGC 57.830 50.000 31.54 0.00 0.00 3.56
1462 1656 3.858238 GTGTACGTGCTCTGTTATCCTTC 59.142 47.826 4.97 0.00 0.00 3.46
1492 1686 1.352352 GGTGATGATGGGGACTATGGG 59.648 57.143 0.00 0.00 0.00 4.00
1552 1749 4.261197 CCTGTTCCTGTCAAAGTGTTAAGC 60.261 45.833 0.00 0.00 0.00 3.09
1553 1750 4.265893 TGTTCCTGTCAAAGTGTTAAGCA 58.734 39.130 0.00 0.00 0.00 3.91
1616 1815 7.588143 TGGTGTTGTGTTAATTCAAACTTTG 57.412 32.000 0.00 0.00 0.00 2.77
1709 2442 6.973474 TGTTTAGGTTTTTGTAAATGACCACG 59.027 34.615 10.88 0.00 32.81 4.94
1715 2448 7.436970 AGGTTTTTGTAAATGACCACGAATTTC 59.563 33.333 10.88 0.00 32.81 2.17
1748 2513 7.687005 TGTTTCGCTACCAATTTAAAAACTG 57.313 32.000 0.00 0.00 0.00 3.16
1759 2524 8.672815 ACCAATTTAAAAACTGTTCACCAATTG 58.327 29.630 14.82 14.82 0.00 2.32
1769 2534 8.791327 AACTGTTCACCAATTGAAAATTCTTT 57.209 26.923 7.12 0.00 46.09 2.52
1824 2590 8.857694 TTTAAATCGTCTATTCCTGAAAAGGT 57.142 30.769 0.00 0.00 0.00 3.50
1830 2597 8.680039 TCGTCTATTCCTGAAAAGGTTTAAAA 57.320 30.769 0.00 0.00 0.00 1.52
1926 2694 9.823647 GAAAGATCTCCTAAAATAGACACATGA 57.176 33.333 0.00 0.00 0.00 3.07
1929 2697 9.606631 AGATCTCCTAAAATAGACACATGAAAC 57.393 33.333 0.00 0.00 0.00 2.78
1932 2700 7.824289 TCTCCTAAAATAGACACATGAAACCAG 59.176 37.037 0.00 0.00 0.00 4.00
2015 2787 3.589988 CTCTGAGCGTTTAGGTGACATT 58.410 45.455 0.00 0.00 0.00 2.71
2017 2789 5.142061 TCTGAGCGTTTAGGTGACATTTA 57.858 39.130 0.00 0.00 0.00 1.40
2018 2790 5.730550 TCTGAGCGTTTAGGTGACATTTAT 58.269 37.500 0.00 0.00 0.00 1.40
2022 2794 4.026407 GCGTTTAGGTGACATTTATTCGC 58.974 43.478 0.00 0.00 0.00 4.70
2023 2795 4.201783 GCGTTTAGGTGACATTTATTCGCT 60.202 41.667 0.00 0.00 36.68 4.93
2028 2800 4.437239 AGGTGACATTTATTCGCTGAGAG 58.563 43.478 0.00 0.00 0.00 3.20
2037 2809 5.607939 TTATTCGCTGAGAGGGACAAATA 57.392 39.130 0.00 0.00 36.88 1.40
2042 2814 4.020573 TCGCTGAGAGGGACAAATAAGAAA 60.021 41.667 0.00 0.00 31.82 2.52
2043 2815 4.695455 CGCTGAGAGGGACAAATAAGAAAA 59.305 41.667 0.00 0.00 0.00 2.29
2044 2816 5.181245 CGCTGAGAGGGACAAATAAGAAAAA 59.819 40.000 0.00 0.00 0.00 1.94
2066 2838 6.548441 AAAACGAAAATCCTACATCAACGA 57.452 33.333 0.00 0.00 0.00 3.85
2067 2839 6.548441 AAACGAAAATCCTACATCAACGAA 57.452 33.333 0.00 0.00 0.00 3.85
2068 2840 5.779806 ACGAAAATCCTACATCAACGAAG 57.220 39.130 0.00 0.00 0.00 3.79
2069 2841 5.475719 ACGAAAATCCTACATCAACGAAGA 58.524 37.500 0.00 0.00 0.00 2.87
2070 2842 5.577164 ACGAAAATCCTACATCAACGAAGAG 59.423 40.000 0.00 0.00 0.00 2.85
2071 2843 5.500931 CGAAAATCCTACATCAACGAAGAGC 60.501 44.000 0.00 0.00 0.00 4.09
2072 2844 4.744795 AATCCTACATCAACGAAGAGCT 57.255 40.909 0.00 0.00 0.00 4.09
2073 2845 5.854010 AATCCTACATCAACGAAGAGCTA 57.146 39.130 0.00 0.00 0.00 3.32
2074 2846 6.412362 AATCCTACATCAACGAAGAGCTAT 57.588 37.500 0.00 0.00 0.00 2.97
2075 2847 5.188327 TCCTACATCAACGAAGAGCTATG 57.812 43.478 0.00 0.00 0.00 2.23
2076 2848 4.645136 TCCTACATCAACGAAGAGCTATGT 59.355 41.667 0.00 0.00 0.00 2.29
2077 2849 5.826208 TCCTACATCAACGAAGAGCTATGTA 59.174 40.000 0.00 0.00 0.00 2.29
2078 2850 5.915758 CCTACATCAACGAAGAGCTATGTAC 59.084 44.000 0.00 0.00 0.00 2.90
2079 2851 4.683832 ACATCAACGAAGAGCTATGTACC 58.316 43.478 0.00 0.00 0.00 3.34
2080 2852 3.416119 TCAACGAAGAGCTATGTACCG 57.584 47.619 0.00 0.00 0.00 4.02
2081 2853 1.852895 CAACGAAGAGCTATGTACCGC 59.147 52.381 0.00 0.00 0.00 5.68
2082 2854 1.390565 ACGAAGAGCTATGTACCGCT 58.609 50.000 0.00 1.59 39.61 5.52
2083 2855 1.749634 ACGAAGAGCTATGTACCGCTT 59.250 47.619 0.00 0.00 36.45 4.68
2084 2856 2.165845 ACGAAGAGCTATGTACCGCTTT 59.834 45.455 0.00 0.00 36.45 3.51
2085 2857 3.379372 ACGAAGAGCTATGTACCGCTTTA 59.621 43.478 0.00 0.00 36.45 1.85
2086 2858 3.729716 CGAAGAGCTATGTACCGCTTTAC 59.270 47.826 3.39 0.00 36.45 2.01
2087 2859 4.497674 CGAAGAGCTATGTACCGCTTTACT 60.498 45.833 3.39 0.00 36.45 2.24
2088 2860 5.340439 AAGAGCTATGTACCGCTTTACTT 57.660 39.130 3.39 1.02 36.45 2.24
2089 2861 6.461110 AAGAGCTATGTACCGCTTTACTTA 57.539 37.500 3.39 0.00 36.45 2.24
2090 2862 6.074544 AGAGCTATGTACCGCTTTACTTAG 57.925 41.667 3.39 8.83 36.45 2.18
2091 2863 5.826737 AGAGCTATGTACCGCTTTACTTAGA 59.173 40.000 14.04 0.00 36.45 2.10
2092 2864 5.829829 AGCTATGTACCGCTTTACTTAGAC 58.170 41.667 14.04 8.41 34.10 2.59
2093 2865 5.593502 AGCTATGTACCGCTTTACTTAGACT 59.406 40.000 14.04 9.74 34.10 3.24
2094 2866 6.096564 AGCTATGTACCGCTTTACTTAGACTT 59.903 38.462 14.04 2.48 34.10 3.01
2095 2867 6.417339 GCTATGTACCGCTTTACTTAGACTTC 59.583 42.308 14.04 0.00 34.10 3.01
2096 2868 5.064441 TGTACCGCTTTACTTAGACTTCC 57.936 43.478 0.00 0.00 0.00 3.46
2097 2869 4.768968 TGTACCGCTTTACTTAGACTTCCT 59.231 41.667 0.00 0.00 0.00 3.36
2098 2870 5.945784 TGTACCGCTTTACTTAGACTTCCTA 59.054 40.000 0.00 0.00 0.00 2.94
2099 2871 5.990120 ACCGCTTTACTTAGACTTCCTAA 57.010 39.130 0.00 0.00 36.07 2.69
2100 2872 6.541934 ACCGCTTTACTTAGACTTCCTAAT 57.458 37.500 0.00 0.00 36.80 1.73
2101 2873 7.651027 ACCGCTTTACTTAGACTTCCTAATA 57.349 36.000 0.00 0.00 36.80 0.98
2102 2874 8.071177 ACCGCTTTACTTAGACTTCCTAATAA 57.929 34.615 0.00 0.00 36.80 1.40
2103 2875 7.978414 ACCGCTTTACTTAGACTTCCTAATAAC 59.022 37.037 0.00 0.00 36.80 1.89
2104 2876 8.196103 CCGCTTTACTTAGACTTCCTAATAACT 58.804 37.037 0.00 0.00 36.80 2.24
2113 2885 7.434927 AGACTTCCTAATAACTAAACCTCCC 57.565 40.000 0.00 0.00 0.00 4.30
2114 2886 6.386342 AGACTTCCTAATAACTAAACCTCCCC 59.614 42.308 0.00 0.00 0.00 4.81
2115 2887 5.431073 ACTTCCTAATAACTAAACCTCCCCC 59.569 44.000 0.00 0.00 0.00 5.40
2151 2923 2.689771 GGCCCGTCTTCCCCCTTA 60.690 66.667 0.00 0.00 0.00 2.69
2152 2924 2.588439 GCCCGTCTTCCCCCTTAC 59.412 66.667 0.00 0.00 0.00 2.34
2153 2925 3.040206 GCCCGTCTTCCCCCTTACC 62.040 68.421 0.00 0.00 0.00 2.85
2154 2926 1.306739 CCCGTCTTCCCCCTTACCT 60.307 63.158 0.00 0.00 0.00 3.08
2155 2927 1.335882 CCCGTCTTCCCCCTTACCTC 61.336 65.000 0.00 0.00 0.00 3.85
2156 2928 1.335882 CCGTCTTCCCCCTTACCTCC 61.336 65.000 0.00 0.00 0.00 4.30
2157 2929 0.616679 CGTCTTCCCCCTTACCTCCA 60.617 60.000 0.00 0.00 0.00 3.86
2158 2930 1.665137 GTCTTCCCCCTTACCTCCAA 58.335 55.000 0.00 0.00 0.00 3.53
2159 2931 2.206223 GTCTTCCCCCTTACCTCCAAT 58.794 52.381 0.00 0.00 0.00 3.16
2160 2932 2.581246 GTCTTCCCCCTTACCTCCAATT 59.419 50.000 0.00 0.00 0.00 2.32
2161 2933 3.784202 GTCTTCCCCCTTACCTCCAATTA 59.216 47.826 0.00 0.00 0.00 1.40
2162 2934 4.415846 GTCTTCCCCCTTACCTCCAATTAT 59.584 45.833 0.00 0.00 0.00 1.28
2163 2935 5.609708 GTCTTCCCCCTTACCTCCAATTATA 59.390 44.000 0.00 0.00 0.00 0.98
2164 2936 6.274908 GTCTTCCCCCTTACCTCCAATTATAT 59.725 42.308 0.00 0.00 0.00 0.86
2165 2937 6.504279 TCTTCCCCCTTACCTCCAATTATATC 59.496 42.308 0.00 0.00 0.00 1.63
2166 2938 5.105853 TCCCCCTTACCTCCAATTATATCC 58.894 45.833 0.00 0.00 0.00 2.59
2167 2939 4.855599 CCCCCTTACCTCCAATTATATCCA 59.144 45.833 0.00 0.00 0.00 3.41
2168 2940 5.496168 CCCCCTTACCTCCAATTATATCCAT 59.504 44.000 0.00 0.00 0.00 3.41
2169 2941 6.353951 CCCCCTTACCTCCAATTATATCCATC 60.354 46.154 0.00 0.00 0.00 3.51
2170 2942 6.353951 CCCCTTACCTCCAATTATATCCATCC 60.354 46.154 0.00 0.00 0.00 3.51
2171 2943 6.217487 CCCTTACCTCCAATTATATCCATCCA 59.783 42.308 0.00 0.00 0.00 3.41
2172 2944 7.112779 CCTTACCTCCAATTATATCCATCCAC 58.887 42.308 0.00 0.00 0.00 4.02
2173 2945 5.520748 ACCTCCAATTATATCCATCCACC 57.479 43.478 0.00 0.00 0.00 4.61
2174 2946 5.173246 ACCTCCAATTATATCCATCCACCT 58.827 41.667 0.00 0.00 0.00 4.00
2175 2947 5.014544 ACCTCCAATTATATCCATCCACCTG 59.985 44.000 0.00 0.00 0.00 4.00
2176 2948 5.503927 CTCCAATTATATCCATCCACCTGG 58.496 45.833 0.00 0.00 37.66 4.45
2177 2949 4.919510 TCCAATTATATCCATCCACCTGGT 59.080 41.667 0.00 0.00 37.57 4.00
2178 2950 5.375354 TCCAATTATATCCATCCACCTGGTT 59.625 40.000 0.00 0.00 37.57 3.67
2179 2951 5.711976 CCAATTATATCCATCCACCTGGTTC 59.288 44.000 0.00 0.00 37.57 3.62
2180 2952 4.617253 TTATATCCATCCACCTGGTTCG 57.383 45.455 0.00 0.00 37.57 3.95
2181 2953 1.874129 TATCCATCCACCTGGTTCGT 58.126 50.000 0.00 0.00 37.57 3.85
2182 2954 0.991920 ATCCATCCACCTGGTTCGTT 59.008 50.000 0.00 0.00 37.57 3.85
2183 2955 1.646912 TCCATCCACCTGGTTCGTTA 58.353 50.000 0.00 0.00 37.57 3.18
2184 2956 1.276989 TCCATCCACCTGGTTCGTTAC 59.723 52.381 0.00 0.00 37.57 2.50
2185 2957 1.355971 CATCCACCTGGTTCGTTACG 58.644 55.000 0.00 0.00 36.34 3.18
2186 2958 0.971386 ATCCACCTGGTTCGTTACGT 59.029 50.000 4.24 0.00 36.34 3.57
2187 2959 0.752054 TCCACCTGGTTCGTTACGTT 59.248 50.000 4.24 0.00 36.34 3.99
2188 2960 1.959985 TCCACCTGGTTCGTTACGTTA 59.040 47.619 4.24 0.00 36.34 3.18
2189 2961 2.363680 TCCACCTGGTTCGTTACGTTAA 59.636 45.455 4.24 0.00 36.34 2.01
2190 2962 3.006752 TCCACCTGGTTCGTTACGTTAAT 59.993 43.478 4.24 0.00 36.34 1.40
2191 2963 3.747529 CCACCTGGTTCGTTACGTTAATT 59.252 43.478 4.24 0.00 0.00 1.40
2192 2964 4.928615 CCACCTGGTTCGTTACGTTAATTA 59.071 41.667 4.24 0.00 0.00 1.40
2193 2965 5.581874 CCACCTGGTTCGTTACGTTAATTAT 59.418 40.000 4.24 0.00 0.00 1.28
2194 2966 6.455913 CCACCTGGTTCGTTACGTTAATTATG 60.456 42.308 4.24 0.00 0.00 1.90
2195 2967 6.091169 CACCTGGTTCGTTACGTTAATTATGT 59.909 38.462 4.24 0.00 0.00 2.29
2196 2968 7.275341 CACCTGGTTCGTTACGTTAATTATGTA 59.725 37.037 4.24 0.00 0.00 2.29
2523 3295 7.986085 ACATATACTATAGCCCAGCAAAAAG 57.014 36.000 0.00 0.00 0.00 2.27
2524 3296 6.431234 ACATATACTATAGCCCAGCAAAAAGC 59.569 38.462 0.00 0.00 46.19 3.51
2569 3341 9.534565 GAATTAAAGAAAAGAAATAGGATGGGC 57.465 33.333 0.00 0.00 0.00 5.36
2570 3342 8.844865 ATTAAAGAAAAGAAATAGGATGGGCT 57.155 30.769 0.00 0.00 0.00 5.19
2571 3343 9.936329 ATTAAAGAAAAGAAATAGGATGGGCTA 57.064 29.630 0.00 0.00 0.00 3.93
2572 3344 7.888250 AAAGAAAAGAAATAGGATGGGCTAG 57.112 36.000 0.00 0.00 0.00 3.42
2573 3345 5.946486 AGAAAAGAAATAGGATGGGCTAGG 58.054 41.667 0.00 0.00 0.00 3.02
2574 3346 3.797559 AAGAAATAGGATGGGCTAGGC 57.202 47.619 8.00 8.00 0.00 3.93
2575 3347 1.625818 AGAAATAGGATGGGCTAGGCG 59.374 52.381 10.58 0.00 0.00 5.52
2576 3348 0.693049 AAATAGGATGGGCTAGGCGG 59.307 55.000 10.58 0.00 0.00 6.13
2577 3349 1.842381 AATAGGATGGGCTAGGCGGC 61.842 60.000 10.58 0.00 37.49 6.53
2584 3356 2.923035 GGCTAGGCGGCCCAGATA 60.923 66.667 18.96 1.96 45.92 1.98
2585 3357 2.294078 GGCTAGGCGGCCCAGATAT 61.294 63.158 18.96 0.00 45.92 1.63
2586 3358 0.976073 GGCTAGGCGGCCCAGATATA 60.976 60.000 18.96 0.80 45.92 0.86
2587 3359 0.461961 GCTAGGCGGCCCAGATATAG 59.538 60.000 18.96 11.96 0.00 1.31
2588 3360 0.461961 CTAGGCGGCCCAGATATAGC 59.538 60.000 17.02 0.00 0.00 2.97
2589 3361 0.041238 TAGGCGGCCCAGATATAGCT 59.959 55.000 17.02 0.00 0.00 3.32
2590 3362 0.041238 AGGCGGCCCAGATATAGCTA 59.959 55.000 17.02 0.00 0.00 3.32
2591 3363 0.461961 GGCGGCCCAGATATAGCTAG 59.538 60.000 8.12 0.00 0.00 3.42
2592 3364 0.179097 GCGGCCCAGATATAGCTAGC 60.179 60.000 6.62 6.62 0.00 3.42
2593 3365 1.479709 CGGCCCAGATATAGCTAGCT 58.520 55.000 23.12 23.12 0.00 3.32
2594 3366 2.656002 CGGCCCAGATATAGCTAGCTA 58.344 52.381 26.09 26.09 0.00 3.32
2595 3367 2.621055 CGGCCCAGATATAGCTAGCTAG 59.379 54.545 27.42 16.84 31.45 3.42
2596 3368 3.637769 GGCCCAGATATAGCTAGCTAGT 58.362 50.000 27.42 19.04 31.45 2.57
2597 3369 3.383185 GGCCCAGATATAGCTAGCTAGTG 59.617 52.174 27.42 20.16 31.45 2.74
2598 3370 4.274147 GCCCAGATATAGCTAGCTAGTGA 58.726 47.826 27.42 16.44 31.45 3.41
2599 3371 4.892934 GCCCAGATATAGCTAGCTAGTGAT 59.107 45.833 27.42 19.91 31.45 3.06
2600 3372 5.009610 GCCCAGATATAGCTAGCTAGTGATC 59.990 48.000 27.42 25.29 31.45 2.92
2601 3373 5.238432 CCCAGATATAGCTAGCTAGTGATCG 59.762 48.000 27.42 20.98 31.45 3.69
2602 3374 5.277779 CCAGATATAGCTAGCTAGTGATCGC 60.278 48.000 27.42 13.10 31.45 4.58
2603 3375 5.527214 CAGATATAGCTAGCTAGTGATCGCT 59.473 44.000 27.42 14.30 40.15 4.93
2604 3376 5.527214 AGATATAGCTAGCTAGTGATCGCTG 59.473 44.000 27.42 9.77 37.05 5.18
2605 3377 1.974265 AGCTAGCTAGTGATCGCTGA 58.026 50.000 17.69 2.55 37.05 4.26
2606 3378 2.513753 AGCTAGCTAGTGATCGCTGAT 58.486 47.619 17.69 9.89 37.05 2.90
2607 3379 2.228582 AGCTAGCTAGTGATCGCTGATG 59.771 50.000 17.69 9.72 37.05 3.07
2608 3380 2.670789 GCTAGCTAGTGATCGCTGATGG 60.671 54.545 21.62 10.28 37.05 3.51
2609 3381 1.697284 AGCTAGTGATCGCTGATGGA 58.303 50.000 19.11 0.00 34.69 3.41
2610 3382 2.246469 AGCTAGTGATCGCTGATGGAT 58.754 47.619 19.11 2.60 34.69 3.41
2611 3383 3.425659 AGCTAGTGATCGCTGATGGATA 58.574 45.455 19.11 0.00 34.69 2.59
2612 3384 3.192422 AGCTAGTGATCGCTGATGGATAC 59.808 47.826 19.11 0.00 34.69 2.24
2613 3385 2.713895 AGTGATCGCTGATGGATACG 57.286 50.000 8.28 0.00 42.51 3.06
2614 3386 1.063806 GTGATCGCTGATGGATACGC 58.936 55.000 0.00 0.00 42.51 4.42
2615 3387 0.673437 TGATCGCTGATGGATACGCA 59.327 50.000 0.00 0.00 42.51 5.24
2616 3388 1.068434 TGATCGCTGATGGATACGCAA 59.932 47.619 0.00 0.00 42.51 4.85
2617 3389 2.135139 GATCGCTGATGGATACGCAAA 58.865 47.619 0.00 0.00 42.51 3.68
2618 3390 1.570813 TCGCTGATGGATACGCAAAG 58.429 50.000 0.00 0.00 42.51 2.77
2619 3391 0.583438 CGCTGATGGATACGCAAAGG 59.417 55.000 0.00 0.00 42.51 3.11
2620 3392 0.308993 GCTGATGGATACGCAAAGGC 59.691 55.000 0.00 0.00 42.51 4.35
2650 3422 1.767388 GTGACTCACGCTCGTTTCG 59.233 57.895 0.00 0.00 0.00 3.46
2651 3423 0.659417 GTGACTCACGCTCGTTTCGA 60.659 55.000 0.00 0.00 0.00 3.71
2652 3424 0.659417 TGACTCACGCTCGTTTCGAC 60.659 55.000 0.00 0.00 0.00 4.20
2653 3425 1.653920 GACTCACGCTCGTTTCGACG 61.654 60.000 0.00 10.50 36.83 5.12
2654 3426 1.724929 CTCACGCTCGTTTCGACGT 60.725 57.895 11.42 11.42 41.27 4.34
2655 3427 1.266786 CTCACGCTCGTTTCGACGTT 61.267 55.000 13.40 2.59 39.76 3.99
2656 3428 0.866906 TCACGCTCGTTTCGACGTTT 60.867 50.000 13.40 0.00 39.76 3.60
2657 3429 0.446784 CACGCTCGTTTCGACGTTTC 60.447 55.000 13.40 0.00 39.76 2.78
2658 3430 1.127225 CGCTCGTTTCGACGTTTCC 59.873 57.895 0.00 0.00 0.00 3.13
2659 3431 1.273455 CGCTCGTTTCGACGTTTCCT 61.273 55.000 0.00 0.00 0.00 3.36
2660 3432 0.857287 GCTCGTTTCGACGTTTCCTT 59.143 50.000 0.00 0.00 0.00 3.36
2661 3433 1.136694 GCTCGTTTCGACGTTTCCTTC 60.137 52.381 0.00 0.00 0.00 3.46
2662 3434 1.121967 CTCGTTTCGACGTTTCCTTCG 59.878 52.381 0.00 0.00 36.55 3.79
2663 3435 0.848305 CGTTTCGACGTTTCCTTCGT 59.152 50.000 0.00 0.00 44.27 3.85
2664 3436 2.043411 CGTTTCGACGTTTCCTTCGTA 58.957 47.619 0.00 0.00 41.64 3.43
2665 3437 2.088056 CGTTTCGACGTTTCCTTCGTAG 59.912 50.000 0.00 0.00 41.64 3.51
2666 3438 2.336554 TTCGACGTTTCCTTCGTAGG 57.663 50.000 0.79 0.79 41.64 3.18
2667 3439 1.238439 TCGACGTTTCCTTCGTAGGT 58.762 50.000 8.06 0.00 42.60 3.08
2668 3440 1.608590 TCGACGTTTCCTTCGTAGGTT 59.391 47.619 8.06 0.00 42.60 3.50
2669 3441 1.981533 CGACGTTTCCTTCGTAGGTTC 59.018 52.381 8.06 0.00 42.60 3.62
2670 3442 1.981533 GACGTTTCCTTCGTAGGTTCG 59.018 52.381 8.06 12.70 42.60 3.95
2671 3443 1.338020 ACGTTTCCTTCGTAGGTTCGT 59.662 47.619 8.06 13.25 42.60 3.85
2672 3444 2.223805 ACGTTTCCTTCGTAGGTTCGTT 60.224 45.455 8.06 1.46 42.60 3.85
2673 3445 2.154389 CGTTTCCTTCGTAGGTTCGTTG 59.846 50.000 8.06 0.00 42.60 4.10
2674 3446 1.787012 TTCCTTCGTAGGTTCGTTGC 58.213 50.000 8.06 0.00 42.60 4.17
2675 3447 0.037975 TCCTTCGTAGGTTCGTTGCC 60.038 55.000 8.06 0.00 42.60 4.52
2676 3448 1.017701 CCTTCGTAGGTTCGTTGCCC 61.018 60.000 0.00 0.00 36.74 5.36
2677 3449 0.037605 CTTCGTAGGTTCGTTGCCCT 60.038 55.000 0.00 0.00 34.74 5.19
2678 3450 0.037975 TTCGTAGGTTCGTTGCCCTC 60.038 55.000 0.00 0.00 32.08 4.30
2679 3451 1.804326 CGTAGGTTCGTTGCCCTCG 60.804 63.158 0.00 0.00 32.08 4.63
2680 3452 2.098831 GTAGGTTCGTTGCCCTCGC 61.099 63.158 0.00 0.00 32.08 5.03
2681 3453 3.305177 TAGGTTCGTTGCCCTCGCC 62.305 63.158 0.00 0.00 32.08 5.54
2701 3473 3.854669 CCCATCGGCCTTCTCGCT 61.855 66.667 0.00 0.00 0.00 4.93
2702 3474 2.279784 CCATCGGCCTTCTCGCTC 60.280 66.667 0.00 0.00 0.00 5.03
2703 3475 2.656651 CATCGGCCTTCTCGCTCG 60.657 66.667 0.00 0.00 0.00 5.03
2704 3476 4.577246 ATCGGCCTTCTCGCTCGC 62.577 66.667 0.00 0.00 0.00 5.03
2783 3555 4.624364 CCACACAGCAGTCCGGCA 62.624 66.667 0.00 0.00 35.83 5.69
2784 3556 3.046087 CACACAGCAGTCCGGCAG 61.046 66.667 0.00 0.00 35.83 4.85
2785 3557 4.320456 ACACAGCAGTCCGGCAGG 62.320 66.667 0.00 0.00 39.46 4.85
2835 3607 3.582120 CCGCGGCAATACGGCAAT 61.582 61.111 14.67 0.00 44.46 3.56
2836 3608 2.248135 CCGCGGCAATACGGCAATA 61.248 57.895 14.67 0.00 44.46 1.90
2837 3609 1.083015 CGCGGCAATACGGCAATAC 60.083 57.895 0.00 0.00 44.46 1.89
2838 3610 1.281656 GCGGCAATACGGCAATACC 59.718 57.895 0.00 0.00 43.73 2.73
2839 3611 1.164041 GCGGCAATACGGCAATACCT 61.164 55.000 0.00 0.00 43.73 3.08
2840 3612 1.874739 GCGGCAATACGGCAATACCTA 60.875 52.381 0.00 0.00 43.73 3.08
2841 3613 2.695359 CGGCAATACGGCAATACCTAT 58.305 47.619 0.00 0.00 41.26 2.57
2842 3614 3.852286 CGGCAATACGGCAATACCTATA 58.148 45.455 0.00 0.00 41.26 1.31
2843 3615 3.615496 CGGCAATACGGCAATACCTATAC 59.385 47.826 0.00 0.00 41.26 1.47
2844 3616 4.571919 GGCAATACGGCAATACCTATACA 58.428 43.478 0.00 0.00 40.76 2.29
2845 3617 4.998672 GGCAATACGGCAATACCTATACAA 59.001 41.667 0.00 0.00 40.76 2.41
2846 3618 5.121768 GGCAATACGGCAATACCTATACAAG 59.878 44.000 0.00 0.00 40.76 3.16
2847 3619 5.699458 GCAATACGGCAATACCTATACAAGT 59.301 40.000 0.00 0.00 35.61 3.16
2848 3620 6.869913 GCAATACGGCAATACCTATACAAGTA 59.130 38.462 0.00 0.00 35.61 2.24
2849 3621 7.063074 GCAATACGGCAATACCTATACAAGTAG 59.937 40.741 0.00 0.00 35.61 2.57
2850 3622 7.771927 ATACGGCAATACCTATACAAGTAGT 57.228 36.000 0.00 0.00 35.61 2.73
2851 3623 6.081872 ACGGCAATACCTATACAAGTAGTC 57.918 41.667 0.00 0.00 35.61 2.59
2852 3624 5.595542 ACGGCAATACCTATACAAGTAGTCA 59.404 40.000 0.00 0.00 35.61 3.41
2853 3625 6.097270 ACGGCAATACCTATACAAGTAGTCAA 59.903 38.462 0.00 0.00 35.61 3.18
2854 3626 6.641314 CGGCAATACCTATACAAGTAGTCAAG 59.359 42.308 0.00 0.00 35.61 3.02
2855 3627 7.498443 GGCAATACCTATACAAGTAGTCAAGT 58.502 38.462 0.00 0.00 34.51 3.16
2856 3628 8.636213 GGCAATACCTATACAAGTAGTCAAGTA 58.364 37.037 0.00 0.00 34.51 2.24
2857 3629 9.460906 GCAATACCTATACAAGTAGTCAAGTAC 57.539 37.037 0.00 0.00 0.00 2.73
2858 3630 9.661187 CAATACCTATACAAGTAGTCAAGTACG 57.339 37.037 0.00 0.00 0.00 3.67
2859 3631 6.129053 ACCTATACAAGTAGTCAAGTACGC 57.871 41.667 0.00 0.00 0.00 4.42
2860 3632 5.649395 ACCTATACAAGTAGTCAAGTACGCA 59.351 40.000 0.00 0.00 0.00 5.24
2861 3633 6.320672 ACCTATACAAGTAGTCAAGTACGCAT 59.679 38.462 0.00 0.00 0.00 4.73
2862 3634 6.856938 CCTATACAAGTAGTCAAGTACGCATC 59.143 42.308 0.00 0.00 0.00 3.91
2863 3635 4.785511 ACAAGTAGTCAAGTACGCATCT 57.214 40.909 0.00 0.00 0.00 2.90
2864 3636 4.486090 ACAAGTAGTCAAGTACGCATCTG 58.514 43.478 0.00 0.00 0.00 2.90
2865 3637 4.217767 ACAAGTAGTCAAGTACGCATCTGA 59.782 41.667 0.00 0.00 0.00 3.27
2866 3638 4.358494 AGTAGTCAAGTACGCATCTGAC 57.642 45.455 6.86 6.86 0.00 3.51
2867 3639 4.011023 AGTAGTCAAGTACGCATCTGACT 58.989 43.478 16.32 16.32 39.54 3.41
2868 3640 3.223423 AGTCAAGTACGCATCTGACTG 57.777 47.619 13.26 0.00 35.60 3.51
2869 3641 2.094494 AGTCAAGTACGCATCTGACTGG 60.094 50.000 13.26 0.00 35.60 4.00
2870 3642 2.094700 GTCAAGTACGCATCTGACTGGA 60.095 50.000 7.43 0.00 0.00 3.86
2871 3643 2.560981 TCAAGTACGCATCTGACTGGAA 59.439 45.455 0.00 0.00 0.00 3.53
2872 3644 2.926200 CAAGTACGCATCTGACTGGAAG 59.074 50.000 0.00 0.00 42.29 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.043411 GCGAGAGGAGAAAGAAAAGCTATTA 58.957 40.000 0.00 0.00 0.00 0.98
56 57 2.097036 TGTAGATCGAGGCGAGGAAAA 58.903 47.619 0.00 0.00 39.91 2.29
74 75 1.327690 ATACATGGGCTCGTCGGTGT 61.328 55.000 0.00 0.00 0.00 4.16
179 187 0.541863 CACCCCTGCGAGGACTAAAT 59.458 55.000 4.00 0.00 37.67 1.40
232 242 0.984230 TTGGAGCCCGAAAGACTGAT 59.016 50.000 0.00 0.00 0.00 2.90
265 275 2.169769 GTCTAATCCATCCCAACGGACA 59.830 50.000 0.00 0.00 42.48 4.02
331 341 3.031660 GCACGACGAGAAACCCTAG 57.968 57.895 0.00 0.00 0.00 3.02
481 491 0.179000 CTCATACTGAAGCCGGCCTT 59.821 55.000 26.15 17.07 36.19 4.35
491 501 0.033503 TGTCGCCCCTCTCATACTGA 60.034 55.000 0.00 0.00 0.00 3.41
524 534 0.894835 TGCCACTGATAGAACGAGCA 59.105 50.000 0.00 0.00 0.00 4.26
533 543 3.627123 CCGAACAATCATTGCCACTGATA 59.373 43.478 0.00 0.00 33.08 2.15
534 544 2.424601 CCGAACAATCATTGCCACTGAT 59.575 45.455 0.00 0.00 34.86 2.90
535 545 1.811965 CCGAACAATCATTGCCACTGA 59.188 47.619 0.00 0.00 0.00 3.41
536 546 1.541147 ACCGAACAATCATTGCCACTG 59.459 47.619 0.00 0.00 0.00 3.66
537 547 1.541147 CACCGAACAATCATTGCCACT 59.459 47.619 0.00 0.00 0.00 4.00
539 549 0.887247 CCACCGAACAATCATTGCCA 59.113 50.000 0.00 0.00 0.00 4.92
547 558 3.086282 GGTTAATGGACCACCGAACAAT 58.914 45.455 13.98 0.00 39.57 2.71
549 560 1.700739 AGGTTAATGGACCACCGAACA 59.299 47.619 13.98 0.00 42.35 3.18
565 576 9.977762 GAACATAATAAAAATTACGTCGAGGTT 57.022 29.630 16.86 0.00 0.00 3.50
591 602 1.796459 CCGGAAGTACAAAACACCTCG 59.204 52.381 0.00 0.00 0.00 4.63
906 957 2.420687 GGAGCCCTGCATATATAGCCAC 60.421 54.545 0.00 0.00 0.00 5.01
1170 1284 0.679002 TAGGGTCCTCGTCCAGTTCG 60.679 60.000 0.00 0.00 0.00 3.95
1497 1691 4.814234 TGTGTACAGTAAAAAGACCTGCAG 59.186 41.667 6.78 6.78 0.00 4.41
1576 1775 9.398538 ACACAACACCAACTATAGTTCTTTTTA 57.601 29.630 15.35 0.00 35.83 1.52
1583 1782 9.344772 TGAATTAACACAACACCAACTATAGTT 57.655 29.630 12.50 12.50 39.12 2.24
1589 1788 6.930731 AGTTTGAATTAACACAACACCAACT 58.069 32.000 0.00 0.00 0.00 3.16
1590 1789 7.589574 AAGTTTGAATTAACACAACACCAAC 57.410 32.000 0.00 0.00 0.00 3.77
1593 1792 7.589574 ACAAAGTTTGAATTAACACAACACC 57.410 32.000 22.23 0.00 0.00 4.16
1616 1815 9.871238 TGAGATCACAAACTAGGAAACTATTAC 57.129 33.333 0.00 0.00 43.39 1.89
1632 2363 6.148480 GCTAGCTTTTCTTCTTGAGATCACAA 59.852 38.462 7.70 5.44 33.49 3.33
1633 2364 5.641209 GCTAGCTTTTCTTCTTGAGATCACA 59.359 40.000 7.70 0.00 33.49 3.58
1636 2367 6.198216 CGTAGCTAGCTTTTCTTCTTGAGATC 59.802 42.308 24.88 0.00 33.49 2.75
1690 2421 7.306925 GGAAATTCGTGGTCATTTACAAAAACC 60.307 37.037 3.76 3.76 0.00 3.27
1691 2422 7.222999 TGGAAATTCGTGGTCATTTACAAAAAC 59.777 33.333 0.00 0.00 31.46 2.43
1695 2428 6.392625 TTGGAAATTCGTGGTCATTTACAA 57.607 33.333 0.00 0.00 39.75 2.41
1697 2430 7.701809 TTTTTGGAAATTCGTGGTCATTTAC 57.298 32.000 0.00 0.00 0.00 2.01
1723 2456 7.923878 ACAGTTTTTAAATTGGTAGCGAAACAT 59.076 29.630 3.32 0.00 30.79 2.71
1724 2457 7.259161 ACAGTTTTTAAATTGGTAGCGAAACA 58.741 30.769 3.32 0.00 30.79 2.83
1725 2458 7.688478 ACAGTTTTTAAATTGGTAGCGAAAC 57.312 32.000 3.32 0.00 30.79 2.78
1728 2461 6.913673 GTGAACAGTTTTTAAATTGGTAGCGA 59.086 34.615 3.32 0.00 30.79 4.93
1729 2462 6.143278 GGTGAACAGTTTTTAAATTGGTAGCG 59.857 38.462 3.32 0.00 30.79 4.26
1730 2463 6.981559 TGGTGAACAGTTTTTAAATTGGTAGC 59.018 34.615 3.32 0.00 30.79 3.58
1731 2464 8.934507 TTGGTGAACAGTTTTTAAATTGGTAG 57.065 30.769 3.32 0.00 30.79 3.18
1732 2465 9.892130 AATTGGTGAACAGTTTTTAAATTGGTA 57.108 25.926 3.32 0.00 30.79 3.25
1741 2506 9.230122 AGAATTTTCAATTGGTGAACAGTTTTT 57.770 25.926 5.42 0.00 46.09 1.94
1798 2563 9.292195 ACCTTTTCAGGAATAGACGATTTAAAA 57.708 29.630 0.00 0.00 44.19 1.52
1799 2564 8.857694 ACCTTTTCAGGAATAGACGATTTAAA 57.142 30.769 0.00 0.00 44.19 1.52
1800 2565 8.857694 AACCTTTTCAGGAATAGACGATTTAA 57.142 30.769 0.00 0.00 44.19 1.52
1802 2568 7.761038 AAACCTTTTCAGGAATAGACGATTT 57.239 32.000 0.00 0.00 44.19 2.17
1804 2570 8.857694 TTTAAACCTTTTCAGGAATAGACGAT 57.142 30.769 0.00 0.00 44.19 3.73
1806 2572 9.908152 AATTTTAAACCTTTTCAGGAATAGACG 57.092 29.630 0.00 0.00 44.19 4.18
1908 2676 7.685481 TCTGGTTTCATGTGTCTATTTTAGGA 58.315 34.615 0.00 0.00 0.00 2.94
1939 2707 5.067273 TGAGACACGGTTTTGATGGTAATT 58.933 37.500 0.00 0.00 0.00 1.40
1946 2714 2.254546 TGCTGAGACACGGTTTTGAT 57.745 45.000 0.00 0.00 0.00 2.57
1949 2717 4.578928 AGTTAAATGCTGAGACACGGTTTT 59.421 37.500 0.00 0.00 0.00 2.43
1993 2765 1.336887 TGTCACCTAAACGCTCAGAGC 60.337 52.381 12.94 12.94 38.02 4.09
1994 2766 2.724977 TGTCACCTAAACGCTCAGAG 57.275 50.000 0.00 0.00 0.00 3.35
2015 2787 3.973206 TTTGTCCCTCTCAGCGAATAA 57.027 42.857 0.00 0.00 0.00 1.40
2017 2789 4.162320 TCTTATTTGTCCCTCTCAGCGAAT 59.838 41.667 0.00 0.00 0.00 3.34
2018 2790 3.513912 TCTTATTTGTCCCTCTCAGCGAA 59.486 43.478 0.00 0.00 0.00 4.70
2042 2814 6.961576 TCGTTGATGTAGGATTTTCGTTTTT 58.038 32.000 0.00 0.00 0.00 1.94
2043 2815 6.548441 TCGTTGATGTAGGATTTTCGTTTT 57.452 33.333 0.00 0.00 0.00 2.43
2044 2816 6.425721 TCTTCGTTGATGTAGGATTTTCGTTT 59.574 34.615 0.00 0.00 0.00 3.60
2045 2817 5.929992 TCTTCGTTGATGTAGGATTTTCGTT 59.070 36.000 0.00 0.00 0.00 3.85
2046 2818 5.475719 TCTTCGTTGATGTAGGATTTTCGT 58.524 37.500 0.00 0.00 0.00 3.85
2047 2819 5.500931 GCTCTTCGTTGATGTAGGATTTTCG 60.501 44.000 0.00 0.00 0.00 3.46
2048 2820 5.582665 AGCTCTTCGTTGATGTAGGATTTTC 59.417 40.000 0.00 0.00 0.00 2.29
2049 2821 5.491982 AGCTCTTCGTTGATGTAGGATTTT 58.508 37.500 0.00 0.00 0.00 1.82
2050 2822 5.091261 AGCTCTTCGTTGATGTAGGATTT 57.909 39.130 0.00 0.00 0.00 2.17
2051 2823 4.744795 AGCTCTTCGTTGATGTAGGATT 57.255 40.909 0.00 0.00 0.00 3.01
2052 2824 5.303078 ACATAGCTCTTCGTTGATGTAGGAT 59.697 40.000 0.00 0.00 0.00 3.24
2053 2825 4.645136 ACATAGCTCTTCGTTGATGTAGGA 59.355 41.667 0.00 0.00 0.00 2.94
2054 2826 4.938080 ACATAGCTCTTCGTTGATGTAGG 58.062 43.478 0.00 0.00 0.00 3.18
2055 2827 5.915758 GGTACATAGCTCTTCGTTGATGTAG 59.084 44.000 0.00 0.00 32.11 2.74
2056 2828 5.505159 CGGTACATAGCTCTTCGTTGATGTA 60.505 44.000 0.00 0.00 0.00 2.29
2057 2829 4.683832 GGTACATAGCTCTTCGTTGATGT 58.316 43.478 0.00 0.00 0.00 3.06
2058 2830 3.731216 CGGTACATAGCTCTTCGTTGATG 59.269 47.826 0.00 0.00 0.00 3.07
2059 2831 3.795826 GCGGTACATAGCTCTTCGTTGAT 60.796 47.826 0.00 0.00 0.00 2.57
2060 2832 2.479049 GCGGTACATAGCTCTTCGTTGA 60.479 50.000 0.00 0.00 0.00 3.18
2061 2833 1.852895 GCGGTACATAGCTCTTCGTTG 59.147 52.381 0.00 0.00 0.00 4.10
2062 2834 1.749634 AGCGGTACATAGCTCTTCGTT 59.250 47.619 0.00 0.00 39.98 3.85
2063 2835 1.390565 AGCGGTACATAGCTCTTCGT 58.609 50.000 0.00 0.00 39.98 3.85
2064 2836 2.493713 AAGCGGTACATAGCTCTTCG 57.506 50.000 9.61 0.00 43.78 3.79
2065 2837 4.934515 AGTAAAGCGGTACATAGCTCTTC 58.065 43.478 9.61 4.62 43.78 2.87
2066 2838 5.340439 AAGTAAAGCGGTACATAGCTCTT 57.660 39.130 9.61 6.90 43.78 2.85
2067 2839 5.826737 TCTAAGTAAAGCGGTACATAGCTCT 59.173 40.000 9.61 0.19 43.78 4.09
2068 2840 5.914074 GTCTAAGTAAAGCGGTACATAGCTC 59.086 44.000 9.61 0.00 43.78 4.09
2069 2841 5.593502 AGTCTAAGTAAAGCGGTACATAGCT 59.406 40.000 4.23 4.23 46.97 3.32
2070 2842 5.829829 AGTCTAAGTAAAGCGGTACATAGC 58.170 41.667 0.00 0.00 29.41 2.97
2071 2843 6.916932 GGAAGTCTAAGTAAAGCGGTACATAG 59.083 42.308 0.00 6.02 30.15 2.23
2072 2844 6.604795 AGGAAGTCTAAGTAAAGCGGTACATA 59.395 38.462 0.00 0.00 0.00 2.29
2073 2845 5.421374 AGGAAGTCTAAGTAAAGCGGTACAT 59.579 40.000 0.00 0.00 0.00 2.29
2074 2846 4.768968 AGGAAGTCTAAGTAAAGCGGTACA 59.231 41.667 0.00 0.00 0.00 2.90
2075 2847 5.321959 AGGAAGTCTAAGTAAAGCGGTAC 57.678 43.478 0.00 0.00 0.00 3.34
2076 2848 7.651027 ATTAGGAAGTCTAAGTAAAGCGGTA 57.349 36.000 0.00 0.00 40.85 4.02
2077 2849 5.990120 TTAGGAAGTCTAAGTAAAGCGGT 57.010 39.130 0.00 0.00 33.34 5.68
2078 2850 8.196103 AGTTATTAGGAAGTCTAAGTAAAGCGG 58.804 37.037 0.00 0.00 40.85 5.52
2087 2859 8.985922 GGGAGGTTTAGTTATTAGGAAGTCTAA 58.014 37.037 0.00 0.00 41.66 2.10
2088 2860 7.566509 GGGGAGGTTTAGTTATTAGGAAGTCTA 59.433 40.741 0.00 0.00 0.00 2.59
2089 2861 6.386342 GGGGAGGTTTAGTTATTAGGAAGTCT 59.614 42.308 0.00 0.00 0.00 3.24
2090 2862 6.409005 GGGGGAGGTTTAGTTATTAGGAAGTC 60.409 46.154 0.00 0.00 0.00 3.01
2091 2863 5.431073 GGGGGAGGTTTAGTTATTAGGAAGT 59.569 44.000 0.00 0.00 0.00 3.01
2092 2864 5.938279 GGGGGAGGTTTAGTTATTAGGAAG 58.062 45.833 0.00 0.00 0.00 3.46
2093 2865 5.981494 GGGGGAGGTTTAGTTATTAGGAA 57.019 43.478 0.00 0.00 0.00 3.36
2134 2906 2.689771 TAAGGGGGAAGACGGGCC 60.690 66.667 0.00 0.00 0.00 5.80
2135 2907 2.588439 GTAAGGGGGAAGACGGGC 59.412 66.667 0.00 0.00 0.00 6.13
2136 2908 1.306739 AGGTAAGGGGGAAGACGGG 60.307 63.158 0.00 0.00 0.00 5.28
2137 2909 1.335882 GGAGGTAAGGGGGAAGACGG 61.336 65.000 0.00 0.00 0.00 4.79
2138 2910 0.616679 TGGAGGTAAGGGGGAAGACG 60.617 60.000 0.00 0.00 0.00 4.18
2139 2911 1.665137 TTGGAGGTAAGGGGGAAGAC 58.335 55.000 0.00 0.00 0.00 3.01
2140 2912 2.680439 ATTGGAGGTAAGGGGGAAGA 57.320 50.000 0.00 0.00 0.00 2.87
2141 2913 6.297068 GGATATAATTGGAGGTAAGGGGGAAG 60.297 46.154 0.00 0.00 0.00 3.46
2142 2914 5.554350 GGATATAATTGGAGGTAAGGGGGAA 59.446 44.000 0.00 0.00 0.00 3.97
2143 2915 5.105853 GGATATAATTGGAGGTAAGGGGGA 58.894 45.833 0.00 0.00 0.00 4.81
2144 2916 4.855599 TGGATATAATTGGAGGTAAGGGGG 59.144 45.833 0.00 0.00 0.00 5.40
2145 2917 6.353951 GGATGGATATAATTGGAGGTAAGGGG 60.354 46.154 0.00 0.00 0.00 4.79
2146 2918 6.217487 TGGATGGATATAATTGGAGGTAAGGG 59.783 42.308 0.00 0.00 0.00 3.95
2147 2919 7.112779 GTGGATGGATATAATTGGAGGTAAGG 58.887 42.308 0.00 0.00 0.00 2.69
2148 2920 7.037297 AGGTGGATGGATATAATTGGAGGTAAG 60.037 40.741 0.00 0.00 0.00 2.34
2149 2921 6.797540 AGGTGGATGGATATAATTGGAGGTAA 59.202 38.462 0.00 0.00 0.00 2.85
2150 2922 6.215431 CAGGTGGATGGATATAATTGGAGGTA 59.785 42.308 0.00 0.00 0.00 3.08
2151 2923 5.014544 CAGGTGGATGGATATAATTGGAGGT 59.985 44.000 0.00 0.00 0.00 3.85
2152 2924 5.503927 CAGGTGGATGGATATAATTGGAGG 58.496 45.833 0.00 0.00 0.00 4.30
2153 2925 5.014544 ACCAGGTGGATGGATATAATTGGAG 59.985 44.000 2.10 0.00 43.57 3.86
2154 2926 4.919510 ACCAGGTGGATGGATATAATTGGA 59.080 41.667 2.10 0.00 43.57 3.53
2155 2927 5.261040 ACCAGGTGGATGGATATAATTGG 57.739 43.478 2.10 0.00 43.57 3.16
2156 2928 5.412594 CGAACCAGGTGGATGGATATAATTG 59.587 44.000 2.10 0.00 43.57 2.32
2157 2929 5.073144 ACGAACCAGGTGGATGGATATAATT 59.927 40.000 2.10 0.00 43.57 1.40
2158 2930 4.597507 ACGAACCAGGTGGATGGATATAAT 59.402 41.667 2.10 0.00 43.57 1.28
2159 2931 3.971305 ACGAACCAGGTGGATGGATATAA 59.029 43.478 2.10 0.00 43.57 0.98
2160 2932 3.583228 ACGAACCAGGTGGATGGATATA 58.417 45.455 2.10 0.00 43.57 0.86
2161 2933 2.408565 ACGAACCAGGTGGATGGATAT 58.591 47.619 2.10 0.00 43.57 1.63
2162 2934 1.874129 ACGAACCAGGTGGATGGATA 58.126 50.000 2.10 0.00 43.57 2.59
2163 2935 0.991920 AACGAACCAGGTGGATGGAT 59.008 50.000 2.10 0.00 43.57 3.41
2164 2936 1.276989 GTAACGAACCAGGTGGATGGA 59.723 52.381 2.10 0.00 43.57 3.41
2165 2937 1.734163 GTAACGAACCAGGTGGATGG 58.266 55.000 2.10 0.00 46.47 3.51
2166 2938 1.337447 ACGTAACGAACCAGGTGGATG 60.337 52.381 2.10 0.00 38.94 3.51
2167 2939 0.971386 ACGTAACGAACCAGGTGGAT 59.029 50.000 2.10 0.00 38.94 3.41
2168 2940 0.752054 AACGTAACGAACCAGGTGGA 59.248 50.000 2.10 0.00 38.94 4.02
2169 2941 2.437200 TAACGTAACGAACCAGGTGG 57.563 50.000 0.00 0.00 42.17 4.61
2170 2942 4.996062 AATTAACGTAACGAACCAGGTG 57.004 40.909 0.00 0.00 0.00 4.00
2171 2943 6.165577 ACATAATTAACGTAACGAACCAGGT 58.834 36.000 0.00 0.00 0.00 4.00
2172 2944 6.651755 ACATAATTAACGTAACGAACCAGG 57.348 37.500 0.00 0.00 0.00 4.45
2497 3269 9.672673 CTTTTTGCTGGGCTATAGTATATGTAT 57.327 33.333 0.84 0.00 0.00 2.29
2498 3270 7.606456 GCTTTTTGCTGGGCTATAGTATATGTA 59.394 37.037 0.84 0.00 38.95 2.29
2499 3271 6.431234 GCTTTTTGCTGGGCTATAGTATATGT 59.569 38.462 0.84 0.00 38.95 2.29
2500 3272 6.430925 TGCTTTTTGCTGGGCTATAGTATATG 59.569 38.462 0.84 0.00 43.37 1.78
2501 3273 6.542821 TGCTTTTTGCTGGGCTATAGTATAT 58.457 36.000 0.84 0.00 43.37 0.86
2502 3274 5.935945 TGCTTTTTGCTGGGCTATAGTATA 58.064 37.500 0.84 0.00 43.37 1.47
2503 3275 4.792068 TGCTTTTTGCTGGGCTATAGTAT 58.208 39.130 0.84 0.00 43.37 2.12
2504 3276 4.229304 TGCTTTTTGCTGGGCTATAGTA 57.771 40.909 0.84 0.00 43.37 1.82
2505 3277 3.085952 TGCTTTTTGCTGGGCTATAGT 57.914 42.857 0.84 0.00 43.37 2.12
2506 3278 3.445096 ACTTGCTTTTTGCTGGGCTATAG 59.555 43.478 0.00 0.00 43.37 1.31
2507 3279 3.430453 ACTTGCTTTTTGCTGGGCTATA 58.570 40.909 0.00 0.00 43.37 1.31
2508 3280 2.250924 ACTTGCTTTTTGCTGGGCTAT 58.749 42.857 0.00 0.00 43.37 2.97
2509 3281 1.703411 ACTTGCTTTTTGCTGGGCTA 58.297 45.000 0.00 0.00 43.37 3.93
2510 3282 1.703411 TACTTGCTTTTTGCTGGGCT 58.297 45.000 0.00 0.00 43.37 5.19
2511 3283 2.524569 TTACTTGCTTTTTGCTGGGC 57.475 45.000 0.00 0.00 43.37 5.36
2543 3315 9.534565 GCCCATCCTATTTCTTTTCTTTAATTC 57.465 33.333 0.00 0.00 0.00 2.17
2544 3316 9.271921 AGCCCATCCTATTTCTTTTCTTTAATT 57.728 29.630 0.00 0.00 0.00 1.40
2545 3317 8.844865 AGCCCATCCTATTTCTTTTCTTTAAT 57.155 30.769 0.00 0.00 0.00 1.40
2546 3318 9.408648 CTAGCCCATCCTATTTCTTTTCTTTAA 57.591 33.333 0.00 0.00 0.00 1.52
2547 3319 7.998964 CCTAGCCCATCCTATTTCTTTTCTTTA 59.001 37.037 0.00 0.00 0.00 1.85
2548 3320 6.836007 CCTAGCCCATCCTATTTCTTTTCTTT 59.164 38.462 0.00 0.00 0.00 2.52
2549 3321 6.368805 CCTAGCCCATCCTATTTCTTTTCTT 58.631 40.000 0.00 0.00 0.00 2.52
2550 3322 5.691436 GCCTAGCCCATCCTATTTCTTTTCT 60.691 44.000 0.00 0.00 0.00 2.52
2551 3323 4.520874 GCCTAGCCCATCCTATTTCTTTTC 59.479 45.833 0.00 0.00 0.00 2.29
2552 3324 4.474394 GCCTAGCCCATCCTATTTCTTTT 58.526 43.478 0.00 0.00 0.00 2.27
2553 3325 3.496870 CGCCTAGCCCATCCTATTTCTTT 60.497 47.826 0.00 0.00 0.00 2.52
2554 3326 2.039084 CGCCTAGCCCATCCTATTTCTT 59.961 50.000 0.00 0.00 0.00 2.52
2555 3327 1.625818 CGCCTAGCCCATCCTATTTCT 59.374 52.381 0.00 0.00 0.00 2.52
2556 3328 1.339151 CCGCCTAGCCCATCCTATTTC 60.339 57.143 0.00 0.00 0.00 2.17
2557 3329 0.693049 CCGCCTAGCCCATCCTATTT 59.307 55.000 0.00 0.00 0.00 1.40
2558 3330 1.842381 GCCGCCTAGCCCATCCTATT 61.842 60.000 0.00 0.00 0.00 1.73
2559 3331 2.294078 GCCGCCTAGCCCATCCTAT 61.294 63.158 0.00 0.00 0.00 2.57
2560 3332 2.923035 GCCGCCTAGCCCATCCTA 60.923 66.667 0.00 0.00 0.00 2.94
2568 3340 0.461961 CTATATCTGGGCCGCCTAGC 59.538 60.000 17.76 0.00 31.85 3.42
2569 3341 0.461961 GCTATATCTGGGCCGCCTAG 59.538 60.000 16.53 16.53 33.15 3.02
2570 3342 0.041238 AGCTATATCTGGGCCGCCTA 59.959 55.000 9.86 1.31 0.00 3.93
2571 3343 0.041238 TAGCTATATCTGGGCCGCCT 59.959 55.000 9.86 0.00 0.00 5.52
2572 3344 0.461961 CTAGCTATATCTGGGCCGCC 59.538 60.000 0.00 0.00 0.00 6.13
2573 3345 0.179097 GCTAGCTATATCTGGGCCGC 60.179 60.000 7.70 0.00 0.00 6.53
2574 3346 1.479709 AGCTAGCTATATCTGGGCCG 58.520 55.000 17.69 0.00 0.00 6.13
2575 3347 3.383185 CACTAGCTAGCTATATCTGGGCC 59.617 52.174 24.36 0.00 0.00 5.80
2576 3348 4.274147 TCACTAGCTAGCTATATCTGGGC 58.726 47.826 24.36 0.00 0.00 5.36
2577 3349 5.238432 CGATCACTAGCTAGCTATATCTGGG 59.762 48.000 24.36 13.70 0.00 4.45
2578 3350 5.277779 GCGATCACTAGCTAGCTATATCTGG 60.278 48.000 24.36 13.96 0.00 3.86
2579 3351 5.527214 AGCGATCACTAGCTAGCTATATCTG 59.473 44.000 24.36 19.73 42.60 2.90
2580 3352 5.527214 CAGCGATCACTAGCTAGCTATATCT 59.473 44.000 24.36 10.33 42.52 1.98
2581 3353 5.525745 TCAGCGATCACTAGCTAGCTATATC 59.474 44.000 24.36 22.33 42.52 1.63
2582 3354 5.432645 TCAGCGATCACTAGCTAGCTATAT 58.567 41.667 24.36 17.23 42.52 0.86
2583 3355 4.833390 TCAGCGATCACTAGCTAGCTATA 58.167 43.478 24.36 13.46 42.52 1.31
2584 3356 3.680490 TCAGCGATCACTAGCTAGCTAT 58.320 45.455 24.36 11.19 42.52 2.97
2585 3357 3.127425 TCAGCGATCACTAGCTAGCTA 57.873 47.619 22.85 22.85 42.52 3.32
2586 3358 1.974265 TCAGCGATCACTAGCTAGCT 58.026 50.000 23.12 23.12 42.52 3.32
2587 3359 2.594321 CATCAGCGATCACTAGCTAGC 58.406 52.381 20.91 6.62 42.52 3.42
2588 3360 2.816672 TCCATCAGCGATCACTAGCTAG 59.183 50.000 19.44 19.44 42.52 3.42
2589 3361 2.863809 TCCATCAGCGATCACTAGCTA 58.136 47.619 0.00 0.00 42.52 3.32
2590 3362 1.697284 TCCATCAGCGATCACTAGCT 58.303 50.000 0.00 0.00 45.74 3.32
2591 3363 2.739885 ATCCATCAGCGATCACTAGC 57.260 50.000 0.00 0.00 0.00 3.42
2592 3364 3.752731 CGTATCCATCAGCGATCACTAG 58.247 50.000 0.00 0.00 0.00 2.57
2593 3365 2.095212 GCGTATCCATCAGCGATCACTA 60.095 50.000 0.00 0.00 0.00 2.74
2594 3366 1.336332 GCGTATCCATCAGCGATCACT 60.336 52.381 0.00 0.00 0.00 3.41
2595 3367 1.063806 GCGTATCCATCAGCGATCAC 58.936 55.000 0.00 0.00 0.00 3.06
2596 3368 0.673437 TGCGTATCCATCAGCGATCA 59.327 50.000 0.00 0.00 0.00 2.92
2597 3369 1.783284 TTGCGTATCCATCAGCGATC 58.217 50.000 0.00 0.00 0.00 3.69
2598 3370 2.138320 CTTTGCGTATCCATCAGCGAT 58.862 47.619 0.00 0.00 0.00 4.58
2599 3371 1.570813 CTTTGCGTATCCATCAGCGA 58.429 50.000 0.00 0.00 0.00 4.93
2600 3372 0.583438 CCTTTGCGTATCCATCAGCG 59.417 55.000 0.00 0.00 0.00 5.18
2601 3373 0.308993 GCCTTTGCGTATCCATCAGC 59.691 55.000 0.00 0.00 0.00 4.26
2632 3404 0.659417 TCGAAACGAGCGTGAGTCAC 60.659 55.000 13.56 13.56 0.00 3.67
2633 3405 0.659417 GTCGAAACGAGCGTGAGTCA 60.659 55.000 0.00 0.00 36.23 3.41
2634 3406 2.052427 GTCGAAACGAGCGTGAGTC 58.948 57.895 0.00 0.00 36.23 3.36
2635 3407 4.223514 GTCGAAACGAGCGTGAGT 57.776 55.556 0.00 0.00 36.23 3.41
2655 3427 4.808631 GGGCAACGAACCTACGAAGGAA 62.809 54.545 0.00 0.00 41.69 3.36
2656 3428 3.366243 GGGCAACGAACCTACGAAGGA 62.366 57.143 0.00 0.00 41.69 3.36
2657 3429 1.017701 GGGCAACGAACCTACGAAGG 61.018 60.000 0.00 0.00 44.02 3.46
2658 3430 0.037605 AGGGCAACGAACCTACGAAG 60.038 55.000 0.00 0.00 34.71 3.79
2659 3431 0.037975 GAGGGCAACGAACCTACGAA 60.038 55.000 0.00 0.00 37.18 3.85
2660 3432 1.588082 GAGGGCAACGAACCTACGA 59.412 57.895 0.00 0.00 37.18 3.43
2661 3433 1.804326 CGAGGGCAACGAACCTACG 60.804 63.158 0.00 0.00 37.18 3.51
2662 3434 2.098831 GCGAGGGCAACGAACCTAC 61.099 63.158 6.73 0.00 37.18 3.18
2663 3435 2.263540 GCGAGGGCAACGAACCTA 59.736 61.111 6.73 0.00 37.18 3.08
2664 3436 4.699522 GGCGAGGGCAACGAACCT 62.700 66.667 6.73 0.00 42.47 3.50
2684 3456 3.798954 GAGCGAGAAGGCCGATGGG 62.799 68.421 0.00 0.00 0.00 4.00
2685 3457 2.279784 GAGCGAGAAGGCCGATGG 60.280 66.667 0.00 0.00 0.00 3.51
2686 3458 2.656651 CGAGCGAGAAGGCCGATG 60.657 66.667 0.00 0.00 0.00 3.84
2687 3459 4.577246 GCGAGCGAGAAGGCCGAT 62.577 66.667 0.00 0.00 0.00 4.18
2766 3538 4.624364 TGCCGGACTGCTGTGTGG 62.624 66.667 5.05 3.70 0.00 4.17
2767 3539 3.046087 CTGCCGGACTGCTGTGTG 61.046 66.667 5.05 0.00 0.00 3.82
2768 3540 4.320456 CCTGCCGGACTGCTGTGT 62.320 66.667 5.05 0.00 0.00 3.72
2819 3591 1.083015 GTATTGCCGTATTGCCGCG 60.083 57.895 0.00 0.00 0.00 6.46
2820 3592 1.164041 AGGTATTGCCGTATTGCCGC 61.164 55.000 0.00 0.00 43.70 6.53
2821 3593 2.157834 TAGGTATTGCCGTATTGCCG 57.842 50.000 0.00 0.00 43.70 5.69
2822 3594 4.571919 TGTATAGGTATTGCCGTATTGCC 58.428 43.478 0.00 0.00 43.70 4.52
2823 3595 5.699458 ACTTGTATAGGTATTGCCGTATTGC 59.301 40.000 0.00 0.00 43.70 3.56
2824 3596 8.086522 ACTACTTGTATAGGTATTGCCGTATTG 58.913 37.037 0.00 0.00 43.70 1.90
2825 3597 8.186709 ACTACTTGTATAGGTATTGCCGTATT 57.813 34.615 0.00 0.00 43.70 1.89
2826 3598 7.449395 TGACTACTTGTATAGGTATTGCCGTAT 59.551 37.037 0.00 0.00 43.70 3.06
2827 3599 6.772233 TGACTACTTGTATAGGTATTGCCGTA 59.228 38.462 0.00 0.00 43.70 4.02
2828 3600 5.595542 TGACTACTTGTATAGGTATTGCCGT 59.404 40.000 0.00 0.00 43.70 5.68
2829 3601 6.080648 TGACTACTTGTATAGGTATTGCCG 57.919 41.667 0.00 0.00 43.70 5.69
2830 3602 7.498443 ACTTGACTACTTGTATAGGTATTGCC 58.502 38.462 0.00 0.00 37.58 4.52
2831 3603 9.460906 GTACTTGACTACTTGTATAGGTATTGC 57.539 37.037 0.00 0.00 0.00 3.56
2832 3604 9.661187 CGTACTTGACTACTTGTATAGGTATTG 57.339 37.037 0.00 0.00 0.00 1.90
2833 3605 8.348507 GCGTACTTGACTACTTGTATAGGTATT 58.651 37.037 0.00 0.00 0.00 1.89
2834 3606 7.500227 TGCGTACTTGACTACTTGTATAGGTAT 59.500 37.037 0.00 0.00 0.00 2.73
2835 3607 6.823182 TGCGTACTTGACTACTTGTATAGGTA 59.177 38.462 0.00 0.00 0.00 3.08
2836 3608 5.649395 TGCGTACTTGACTACTTGTATAGGT 59.351 40.000 0.00 0.00 0.00 3.08
2837 3609 6.127810 TGCGTACTTGACTACTTGTATAGG 57.872 41.667 0.00 0.00 0.00 2.57
2838 3610 7.588123 CAGATGCGTACTTGACTACTTGTATAG 59.412 40.741 0.00 0.00 0.00 1.31
2839 3611 7.281549 TCAGATGCGTACTTGACTACTTGTATA 59.718 37.037 0.00 0.00 0.00 1.47
2840 3612 6.095021 TCAGATGCGTACTTGACTACTTGTAT 59.905 38.462 0.00 0.00 0.00 2.29
2841 3613 5.413523 TCAGATGCGTACTTGACTACTTGTA 59.586 40.000 0.00 0.00 0.00 2.41
2842 3614 4.217767 TCAGATGCGTACTTGACTACTTGT 59.782 41.667 0.00 0.00 0.00 3.16
2843 3615 4.559251 GTCAGATGCGTACTTGACTACTTG 59.441 45.833 10.60 0.00 0.00 3.16
2844 3616 4.459685 AGTCAGATGCGTACTTGACTACTT 59.540 41.667 16.50 0.00 35.23 2.24
2845 3617 4.011023 AGTCAGATGCGTACTTGACTACT 58.989 43.478 16.50 0.00 35.23 2.57
2846 3618 4.099120 CAGTCAGATGCGTACTTGACTAC 58.901 47.826 17.25 0.00 35.23 2.73
2847 3619 3.128764 CCAGTCAGATGCGTACTTGACTA 59.871 47.826 17.25 0.00 35.23 2.59
2848 3620 2.094494 CCAGTCAGATGCGTACTTGACT 60.094 50.000 13.54 13.54 37.13 3.41
2849 3621 2.094700 TCCAGTCAGATGCGTACTTGAC 60.095 50.000 10.07 10.07 0.00 3.18
2850 3622 2.167662 TCCAGTCAGATGCGTACTTGA 58.832 47.619 0.00 0.00 0.00 3.02
2851 3623 2.654749 TCCAGTCAGATGCGTACTTG 57.345 50.000 0.00 0.00 0.00 3.16
2852 3624 2.563179 ACTTCCAGTCAGATGCGTACTT 59.437 45.455 0.00 0.00 0.00 2.24
2853 3625 2.164624 GACTTCCAGTCAGATGCGTACT 59.835 50.000 0.00 0.00 44.45 2.73
2854 3626 2.531206 GACTTCCAGTCAGATGCGTAC 58.469 52.381 0.00 0.00 44.45 3.67
2855 3627 2.941453 GACTTCCAGTCAGATGCGTA 57.059 50.000 0.00 0.00 44.45 4.42
2856 3628 3.822607 GACTTCCAGTCAGATGCGT 57.177 52.632 0.00 0.00 44.45 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.