Multiple sequence alignment - TraesCS5B01G047400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G047400 chr5B 100.000 3908 0 0 1 3908 53525964 53529871 0.000000e+00 7217.0
1 TraesCS5B01G047400 chr5B 91.373 568 41 6 3344 3908 522340320 522340882 0.000000e+00 771.0
2 TraesCS5B01G047400 chr5B 85.417 240 34 1 2941 3180 53534737 53534975 8.390000e-62 248.0
3 TraesCS5B01G047400 chr5D 81.934 1655 170 51 737 2370 50635004 50636550 0.000000e+00 1280.0
4 TraesCS5B01G047400 chr5D 86.326 1097 111 20 912 1998 42978161 42979228 0.000000e+00 1158.0
5 TraesCS5B01G047400 chr5D 79.908 1090 156 37 880 1955 50569526 50570566 0.000000e+00 741.0
6 TraesCS5B01G047400 chr5D 89.076 595 38 15 247 825 50568925 50569508 0.000000e+00 713.0
7 TraesCS5B01G047400 chr5D 91.441 479 37 3 2709 3186 50636623 50637098 0.000000e+00 654.0
8 TraesCS5B01G047400 chr5D 80.740 784 116 23 2118 2890 50570677 50571436 2.620000e-161 579.0
9 TraesCS5B01G047400 chr5D 86.250 400 18 12 737 1127 50653407 50653036 2.190000e-107 399.0
10 TraesCS5B01G047400 chr5D 77.350 702 134 19 2179 2876 42979975 42980655 3.660000e-105 392.0
11 TraesCS5B01G047400 chr5D 81.903 431 60 9 2924 3342 50641412 50641836 8.040000e-92 348.0
12 TraesCS5B01G047400 chr5D 85.494 324 19 11 397 700 50653726 50653411 2.930000e-81 313.0
13 TraesCS5B01G047400 chr5D 89.069 247 13 8 457 700 50634765 50635000 1.060000e-75 294.0
14 TraesCS5B01G047400 chr5D 80.533 375 46 12 2924 3286 42980655 42981014 2.990000e-66 263.0
15 TraesCS5B01G047400 chr5D 92.899 169 9 1 3180 3345 50639815 50639983 3.900000e-60 243.0
16 TraesCS5B01G047400 chr5D 83.607 122 17 1 1063 1181 9228413 9228292 1.150000e-20 111.0
17 TraesCS5B01G047400 chr5D 91.176 68 4 1 641 706 42978095 42978162 1.500000e-14 91.6
18 TraesCS5B01G047400 chr5A 79.487 1521 229 46 785 2282 39915969 39917429 0.000000e+00 1003.0
19 TraesCS5B01G047400 chr5A 78.300 894 162 21 2468 3342 39921728 39922608 7.380000e-152 547.0
20 TraesCS5B01G047400 chr5A 88.644 317 20 8 395 706 39915656 39915961 4.770000e-99 372.0
21 TraesCS5B01G047400 chr5A 79.000 100 21 0 1814 1913 644098525 644098624 7.010000e-08 69.4
22 TraesCS5B01G047400 chr1D 92.091 569 36 6 3345 3908 90191201 90190637 0.000000e+00 793.0
23 TraesCS5B01G047400 chr1D 91.388 569 40 6 3345 3908 151689855 151689291 0.000000e+00 771.0
24 TraesCS5B01G047400 chr3A 91.901 568 35 7 3346 3908 474699554 474698993 0.000000e+00 784.0
25 TraesCS5B01G047400 chr3D 91.564 569 37 8 3346 3908 56066302 56065739 0.000000e+00 774.0
26 TraesCS5B01G047400 chr3D 91.373 568 42 4 3345 3908 161857157 161856593 0.000000e+00 771.0
27 TraesCS5B01G047400 chr3D 91.373 568 42 4 3345 3908 161863959 161863395 0.000000e+00 771.0
28 TraesCS5B01G047400 chr2D 91.388 569 40 7 3345 3908 210060641 210060077 0.000000e+00 771.0
29 TraesCS5B01G047400 chr6D 91.373 568 40 6 3345 3908 397454140 397453578 0.000000e+00 769.0
30 TraesCS5B01G047400 chr7A 78.356 961 178 21 979 1933 50243645 50242709 2.600000e-166 595.0
31 TraesCS5B01G047400 chr4A 76.618 958 174 28 990 1934 737707106 737708026 2.110000e-132 483.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G047400 chr5B 53525964 53529871 3907 False 7217.000000 7217 100.000000 1 3908 1 chr5B.!!$F1 3907
1 TraesCS5B01G047400 chr5B 522340320 522340882 562 False 771.000000 771 91.373000 3344 3908 1 chr5B.!!$F3 564
2 TraesCS5B01G047400 chr5D 50568925 50571436 2511 False 677.666667 741 83.241333 247 2890 3 chr5D.!!$F2 2643
3 TraesCS5B01G047400 chr5D 50634765 50641836 7071 False 563.800000 1280 87.449200 457 3345 5 chr5D.!!$F3 2888
4 TraesCS5B01G047400 chr5D 42978095 42981014 2919 False 476.150000 1158 83.846250 641 3286 4 chr5D.!!$F1 2645
5 TraesCS5B01G047400 chr5D 50653036 50653726 690 True 356.000000 399 85.872000 397 1127 2 chr5D.!!$R2 730
6 TraesCS5B01G047400 chr5A 39915656 39917429 1773 False 687.500000 1003 84.065500 395 2282 2 chr5A.!!$F3 1887
7 TraesCS5B01G047400 chr5A 39921728 39922608 880 False 547.000000 547 78.300000 2468 3342 1 chr5A.!!$F1 874
8 TraesCS5B01G047400 chr1D 90190637 90191201 564 True 793.000000 793 92.091000 3345 3908 1 chr1D.!!$R1 563
9 TraesCS5B01G047400 chr1D 151689291 151689855 564 True 771.000000 771 91.388000 3345 3908 1 chr1D.!!$R2 563
10 TraesCS5B01G047400 chr3A 474698993 474699554 561 True 784.000000 784 91.901000 3346 3908 1 chr3A.!!$R1 562
11 TraesCS5B01G047400 chr3D 56065739 56066302 563 True 774.000000 774 91.564000 3346 3908 1 chr3D.!!$R1 562
12 TraesCS5B01G047400 chr3D 161856593 161857157 564 True 771.000000 771 91.373000 3345 3908 1 chr3D.!!$R2 563
13 TraesCS5B01G047400 chr3D 161863395 161863959 564 True 771.000000 771 91.373000 3345 3908 1 chr3D.!!$R3 563
14 TraesCS5B01G047400 chr2D 210060077 210060641 564 True 771.000000 771 91.388000 3345 3908 1 chr2D.!!$R1 563
15 TraesCS5B01G047400 chr6D 397453578 397454140 562 True 769.000000 769 91.373000 3345 3908 1 chr6D.!!$R1 563
16 TraesCS5B01G047400 chr7A 50242709 50243645 936 True 595.000000 595 78.356000 979 1933 1 chr7A.!!$R1 954
17 TraesCS5B01G047400 chr4A 737707106 737708026 920 False 483.000000 483 76.618000 990 1934 1 chr4A.!!$F1 944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.033504 TGTCGTGGAAAGACCTGCTC 59.966 55.0 0.00 0.0 45.07 4.26 F
1466 1583 0.031721 GTCTGGAACGAGTCAACCGT 59.968 55.0 0.00 0.0 42.61 4.83 F
1505 1622 0.035458 GTGGCCTACTGCAACAGAGT 59.965 55.0 3.32 0.0 43.96 3.24 F
1579 1696 0.110192 CTCGCCGTTTCTCAAAAGCC 60.110 55.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 2034 0.035739 ACTTACCCGTGCATCCGTTT 59.964 50.0 0.00 0.00 0.00 3.60 R
2792 7921 0.105593 CGATGCTGGATGGCTAGTGT 59.894 55.0 0.00 0.00 0.00 3.55 R
2796 7925 0.109153 ATTGCGATGCTGGATGGCTA 59.891 50.0 16.15 9.84 36.75 3.93 R
3272 8416 0.182061 ACGACCGAGCTATGACCCTA 59.818 55.0 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.320608 TTTGAAGAACATGACAAAGGCC 57.679 40.909 0.00 0.00 0.00 5.19
23 24 3.228188 TGAAGAACATGACAAAGGCCT 57.772 42.857 0.00 0.00 0.00 5.19
24 25 2.886523 TGAAGAACATGACAAAGGCCTG 59.113 45.455 5.69 0.00 0.00 4.85
25 26 2.664402 AGAACATGACAAAGGCCTGT 57.336 45.000 5.69 0.00 0.00 4.00
26 27 2.508526 AGAACATGACAAAGGCCTGTC 58.491 47.619 16.35 16.35 45.01 3.51
30 31 3.655481 GACAAAGGCCTGTCGTGG 58.345 61.111 5.69 0.00 36.64 4.94
31 32 1.070786 GACAAAGGCCTGTCGTGGA 59.929 57.895 5.69 0.00 36.64 4.02
32 33 0.534203 GACAAAGGCCTGTCGTGGAA 60.534 55.000 5.69 0.00 36.64 3.53
33 34 0.106918 ACAAAGGCCTGTCGTGGAAA 60.107 50.000 5.69 0.00 0.00 3.13
34 35 0.593128 CAAAGGCCTGTCGTGGAAAG 59.407 55.000 5.69 0.00 0.00 2.62
35 36 0.472471 AAAGGCCTGTCGTGGAAAGA 59.528 50.000 5.69 0.00 0.00 2.52
36 37 0.250338 AAGGCCTGTCGTGGAAAGAC 60.250 55.000 5.69 0.00 45.90 3.01
37 38 1.671379 GGCCTGTCGTGGAAAGACC 60.671 63.158 0.00 0.00 45.07 3.85
38 39 1.371558 GCCTGTCGTGGAAAGACCT 59.628 57.895 0.00 0.00 45.07 3.85
39 40 0.951040 GCCTGTCGTGGAAAGACCTG 60.951 60.000 0.00 0.00 45.07 4.00
40 41 0.951040 CCTGTCGTGGAAAGACCTGC 60.951 60.000 0.00 0.00 45.07 4.85
41 42 0.034059 CTGTCGTGGAAAGACCTGCT 59.966 55.000 0.00 0.00 45.07 4.24
42 43 0.033504 TGTCGTGGAAAGACCTGCTC 59.966 55.000 0.00 0.00 45.07 4.26
43 44 0.033504 GTCGTGGAAAGACCTGCTCA 59.966 55.000 0.00 0.00 39.53 4.26
44 45 0.756294 TCGTGGAAAGACCTGCTCAA 59.244 50.000 0.00 0.00 39.86 3.02
45 46 1.347707 TCGTGGAAAGACCTGCTCAAT 59.652 47.619 0.00 0.00 39.86 2.57
46 47 1.734465 CGTGGAAAGACCTGCTCAATC 59.266 52.381 0.00 0.00 39.86 2.67
47 48 2.783135 GTGGAAAGACCTGCTCAATCA 58.217 47.619 0.00 0.00 39.86 2.57
48 49 2.485814 GTGGAAAGACCTGCTCAATCAC 59.514 50.000 0.00 0.00 39.86 3.06
49 50 2.087646 GGAAAGACCTGCTCAATCACC 58.912 52.381 0.00 0.00 35.41 4.02
50 51 2.553028 GGAAAGACCTGCTCAATCACCA 60.553 50.000 0.00 0.00 35.41 4.17
51 52 2.191128 AAGACCTGCTCAATCACCAC 57.809 50.000 0.00 0.00 0.00 4.16
52 53 1.356124 AGACCTGCTCAATCACCACT 58.644 50.000 0.00 0.00 0.00 4.00
53 54 1.701847 AGACCTGCTCAATCACCACTT 59.298 47.619 0.00 0.00 0.00 3.16
54 55 2.107204 AGACCTGCTCAATCACCACTTT 59.893 45.455 0.00 0.00 0.00 2.66
55 56 3.327757 AGACCTGCTCAATCACCACTTTA 59.672 43.478 0.00 0.00 0.00 1.85
56 57 4.018960 AGACCTGCTCAATCACCACTTTAT 60.019 41.667 0.00 0.00 0.00 1.40
57 58 5.189736 AGACCTGCTCAATCACCACTTTATA 59.810 40.000 0.00 0.00 0.00 0.98
58 59 5.815581 ACCTGCTCAATCACCACTTTATAA 58.184 37.500 0.00 0.00 0.00 0.98
59 60 5.648092 ACCTGCTCAATCACCACTTTATAAC 59.352 40.000 0.00 0.00 0.00 1.89
60 61 5.220662 CCTGCTCAATCACCACTTTATAACG 60.221 44.000 0.00 0.00 0.00 3.18
61 62 5.483811 TGCTCAATCACCACTTTATAACGA 58.516 37.500 0.00 0.00 0.00 3.85
62 63 5.580691 TGCTCAATCACCACTTTATAACGAG 59.419 40.000 0.00 0.00 0.00 4.18
63 64 5.581085 GCTCAATCACCACTTTATAACGAGT 59.419 40.000 0.00 0.00 0.00 4.18
64 65 6.237861 GCTCAATCACCACTTTATAACGAGTC 60.238 42.308 0.00 0.00 0.00 3.36
65 66 5.803461 TCAATCACCACTTTATAACGAGTCG 59.197 40.000 11.85 11.85 0.00 4.18
66 67 4.771590 TCACCACTTTATAACGAGTCGT 57.228 40.909 13.56 13.56 43.97 4.34
67 68 4.726416 TCACCACTTTATAACGAGTCGTC 58.274 43.478 20.18 0.00 39.99 4.20
68 69 3.855950 CACCACTTTATAACGAGTCGTCC 59.144 47.826 20.18 0.00 39.99 4.79
69 70 3.507233 ACCACTTTATAACGAGTCGTCCA 59.493 43.478 20.18 10.54 39.99 4.02
70 71 3.855950 CCACTTTATAACGAGTCGTCCAC 59.144 47.826 20.18 0.00 39.99 4.02
71 72 4.478699 CACTTTATAACGAGTCGTCCACA 58.521 43.478 20.18 5.19 39.99 4.17
72 73 4.919168 CACTTTATAACGAGTCGTCCACAA 59.081 41.667 20.18 9.11 39.99 3.33
73 74 4.919754 ACTTTATAACGAGTCGTCCACAAC 59.080 41.667 20.18 0.00 39.99 3.32
83 84 1.785768 CGTCCACAACGTCCATAACA 58.214 50.000 0.00 0.00 46.42 2.41
84 85 2.343101 CGTCCACAACGTCCATAACAT 58.657 47.619 0.00 0.00 46.42 2.71
85 86 2.347452 CGTCCACAACGTCCATAACATC 59.653 50.000 0.00 0.00 46.42 3.06
86 87 2.347452 GTCCACAACGTCCATAACATCG 59.653 50.000 0.00 0.00 0.00 3.84
87 88 1.062002 CCACAACGTCCATAACATCGC 59.938 52.381 0.00 0.00 0.00 4.58
88 89 1.062002 CACAACGTCCATAACATCGCC 59.938 52.381 0.00 0.00 0.00 5.54
89 90 0.300491 CAACGTCCATAACATCGCCG 59.700 55.000 0.00 0.00 0.00 6.46
90 91 1.426041 AACGTCCATAACATCGCCGC 61.426 55.000 0.00 0.00 0.00 6.53
91 92 1.880796 CGTCCATAACATCGCCGCA 60.881 57.895 0.00 0.00 0.00 5.69
92 93 1.425267 CGTCCATAACATCGCCGCAA 61.425 55.000 0.00 0.00 0.00 4.85
93 94 0.304705 GTCCATAACATCGCCGCAAG 59.695 55.000 0.00 0.00 0.00 4.01
107 108 1.303309 CGCAAGGATTAGCCAGAAGG 58.697 55.000 0.00 0.00 40.02 3.46
108 109 1.685148 GCAAGGATTAGCCAGAAGGG 58.315 55.000 0.00 0.00 40.02 3.95
115 116 3.081554 AGCCAGAAGGGTGCGATT 58.918 55.556 0.00 0.00 45.81 3.34
116 117 1.380302 AGCCAGAAGGGTGCGATTT 59.620 52.632 0.00 0.00 45.81 2.17
117 118 0.678048 AGCCAGAAGGGTGCGATTTC 60.678 55.000 0.00 0.00 45.81 2.17
118 119 0.960364 GCCAGAAGGGTGCGATTTCA 60.960 55.000 0.00 0.00 39.65 2.69
119 120 1.755179 CCAGAAGGGTGCGATTTCAT 58.245 50.000 0.00 0.00 0.00 2.57
120 121 1.672881 CCAGAAGGGTGCGATTTCATC 59.327 52.381 0.00 0.00 0.00 2.92
121 122 1.672881 CAGAAGGGTGCGATTTCATCC 59.327 52.381 0.00 0.00 37.51 3.51
122 123 1.281867 AGAAGGGTGCGATTTCATCCA 59.718 47.619 0.00 0.00 39.72 3.41
123 124 1.672881 GAAGGGTGCGATTTCATCCAG 59.327 52.381 0.00 0.00 39.72 3.86
124 125 0.620556 AGGGTGCGATTTCATCCAGT 59.379 50.000 0.00 0.00 39.72 4.00
125 126 1.017387 GGGTGCGATTTCATCCAGTC 58.983 55.000 0.00 0.00 37.20 3.51
126 127 1.407437 GGGTGCGATTTCATCCAGTCT 60.407 52.381 0.00 0.00 37.20 3.24
127 128 1.667724 GGTGCGATTTCATCCAGTCTG 59.332 52.381 0.00 0.00 0.00 3.51
128 129 2.621338 GTGCGATTTCATCCAGTCTGA 58.379 47.619 0.00 0.00 0.00 3.27
129 130 2.606725 GTGCGATTTCATCCAGTCTGAG 59.393 50.000 0.00 0.00 0.00 3.35
130 131 2.234661 TGCGATTTCATCCAGTCTGAGT 59.765 45.455 0.00 0.00 0.00 3.41
131 132 3.447229 TGCGATTTCATCCAGTCTGAGTA 59.553 43.478 0.00 0.00 0.00 2.59
132 133 4.047822 GCGATTTCATCCAGTCTGAGTAG 58.952 47.826 0.00 0.00 0.00 2.57
133 134 4.047822 CGATTTCATCCAGTCTGAGTAGC 58.952 47.826 0.00 0.00 0.00 3.58
134 135 4.202101 CGATTTCATCCAGTCTGAGTAGCT 60.202 45.833 0.00 0.00 0.00 3.32
135 136 5.009110 CGATTTCATCCAGTCTGAGTAGCTA 59.991 44.000 0.00 0.00 0.00 3.32
136 137 6.294453 CGATTTCATCCAGTCTGAGTAGCTAT 60.294 42.308 0.00 0.00 0.00 2.97
137 138 5.781210 TTCATCCAGTCTGAGTAGCTATG 57.219 43.478 0.00 0.00 0.00 2.23
138 139 4.148079 TCATCCAGTCTGAGTAGCTATGG 58.852 47.826 0.00 0.00 0.00 2.74
139 140 2.311463 TCCAGTCTGAGTAGCTATGGC 58.689 52.381 0.00 0.00 39.06 4.40
140 141 1.342819 CCAGTCTGAGTAGCTATGGCC 59.657 57.143 0.00 0.00 39.73 5.36
141 142 2.315176 CAGTCTGAGTAGCTATGGCCT 58.685 52.381 3.32 0.00 39.73 5.19
142 143 2.295909 CAGTCTGAGTAGCTATGGCCTC 59.704 54.545 3.32 0.00 39.73 4.70
143 144 2.091610 AGTCTGAGTAGCTATGGCCTCA 60.092 50.000 3.32 10.41 39.73 3.86
144 145 2.695666 GTCTGAGTAGCTATGGCCTCAA 59.304 50.000 3.32 3.04 36.71 3.02
145 146 2.961741 TCTGAGTAGCTATGGCCTCAAG 59.038 50.000 3.32 0.00 36.71 3.02
146 147 2.036992 CTGAGTAGCTATGGCCTCAAGG 59.963 54.545 3.32 0.00 36.71 3.61
147 148 2.320781 GAGTAGCTATGGCCTCAAGGA 58.679 52.381 3.32 0.00 39.73 3.36
148 149 2.298729 GAGTAGCTATGGCCTCAAGGAG 59.701 54.545 3.32 0.00 39.73 3.69
149 150 1.051812 TAGCTATGGCCTCAAGGAGC 58.948 55.000 3.32 3.64 39.73 4.70
150 151 0.693767 AGCTATGGCCTCAAGGAGCT 60.694 55.000 3.32 6.06 39.73 4.09
151 152 0.250252 GCTATGGCCTCAAGGAGCTC 60.250 60.000 4.71 4.71 37.39 4.09
152 153 0.396060 CTATGGCCTCAAGGAGCTCC 59.604 60.000 26.22 26.22 37.39 4.70
153 154 0.326522 TATGGCCTCAAGGAGCTCCA 60.327 55.000 33.90 13.39 38.89 3.86
154 155 0.992431 ATGGCCTCAAGGAGCTCCAT 60.992 55.000 33.90 21.09 36.99 3.41
155 156 1.148048 GGCCTCAAGGAGCTCCATC 59.852 63.158 33.90 14.95 38.89 3.51
156 157 1.630126 GGCCTCAAGGAGCTCCATCA 61.630 60.000 33.90 8.79 38.89 3.07
157 158 0.254178 GCCTCAAGGAGCTCCATCAA 59.746 55.000 33.90 15.23 38.89 2.57
158 159 1.340405 GCCTCAAGGAGCTCCATCAAA 60.340 52.381 33.90 13.49 38.89 2.69
159 160 2.686118 GCCTCAAGGAGCTCCATCAAAT 60.686 50.000 33.90 10.03 38.89 2.32
160 161 3.212685 CCTCAAGGAGCTCCATCAAATC 58.787 50.000 33.90 4.81 38.89 2.17
161 162 3.212685 CTCAAGGAGCTCCATCAAATCC 58.787 50.000 33.90 5.02 38.89 3.01
162 163 2.577563 TCAAGGAGCTCCATCAAATCCA 59.422 45.455 33.90 4.68 38.89 3.41
163 164 2.950309 CAAGGAGCTCCATCAAATCCAG 59.050 50.000 33.90 4.39 38.89 3.86
164 165 1.493871 AGGAGCTCCATCAAATCCAGG 59.506 52.381 33.90 0.00 38.89 4.45
165 166 1.478288 GGAGCTCCATCAAATCCAGGG 60.478 57.143 28.43 0.00 35.64 4.45
166 167 0.106318 AGCTCCATCAAATCCAGGGC 60.106 55.000 0.00 0.00 0.00 5.19
167 168 0.396139 GCTCCATCAAATCCAGGGCA 60.396 55.000 0.00 0.00 0.00 5.36
168 169 1.756690 GCTCCATCAAATCCAGGGCAT 60.757 52.381 0.00 0.00 0.00 4.40
169 170 2.236766 CTCCATCAAATCCAGGGCATC 58.763 52.381 0.00 0.00 0.00 3.91
170 171 1.133388 TCCATCAAATCCAGGGCATCC 60.133 52.381 0.00 0.00 0.00 3.51
171 172 0.956633 CATCAAATCCAGGGCATCCG 59.043 55.000 0.00 0.00 38.33 4.18
172 173 0.846015 ATCAAATCCAGGGCATCCGA 59.154 50.000 0.00 0.00 38.33 4.55
173 174 0.181114 TCAAATCCAGGGCATCCGAG 59.819 55.000 0.00 0.00 38.33 4.63
174 175 0.107017 CAAATCCAGGGCATCCGAGT 60.107 55.000 0.00 0.00 38.33 4.18
175 176 0.181350 AAATCCAGGGCATCCGAGTC 59.819 55.000 0.00 0.00 38.33 3.36
176 177 2.032860 AATCCAGGGCATCCGAGTCG 62.033 60.000 5.29 5.29 38.33 4.18
195 196 2.817834 GCACCAATGCCTCGCGTA 60.818 61.111 5.77 0.00 46.97 4.42
196 197 3.089784 CACCAATGCCTCGCGTAC 58.910 61.111 5.77 0.00 0.00 3.67
197 198 2.508439 ACCAATGCCTCGCGTACG 60.508 61.111 11.84 11.84 42.01 3.67
207 208 3.248171 CGCGTACGAAGCAGGAGC 61.248 66.667 21.65 0.00 43.93 4.70
219 220 4.658786 AGGAGCTGGGTCCCGGTT 62.659 66.667 18.58 12.71 37.31 4.44
220 221 3.647771 GGAGCTGGGTCCCGGTTT 61.648 66.667 18.58 7.09 31.34 3.27
221 222 2.046217 GAGCTGGGTCCCGGTTTC 60.046 66.667 18.58 12.32 31.34 2.78
222 223 3.623703 GAGCTGGGTCCCGGTTTCC 62.624 68.421 18.58 1.16 31.34 3.13
223 224 3.961414 GCTGGGTCCCGGTTTCCA 61.961 66.667 18.58 3.57 31.34 3.53
224 225 2.351276 CTGGGTCCCGGTTTCCAG 59.649 66.667 16.37 16.37 40.46 3.86
225 226 2.448931 TGGGTCCCGGTTTCCAGT 60.449 61.111 2.65 0.00 0.00 4.00
226 227 1.152074 TGGGTCCCGGTTTCCAGTA 60.152 57.895 2.65 0.00 0.00 2.74
227 228 1.297689 GGGTCCCGGTTTCCAGTAC 59.702 63.158 0.00 0.00 0.00 2.73
228 229 1.482748 GGGTCCCGGTTTCCAGTACA 61.483 60.000 0.00 0.00 0.00 2.90
229 230 0.036671 GGTCCCGGTTTCCAGTACAG 60.037 60.000 0.00 0.00 0.00 2.74
230 231 0.672711 GTCCCGGTTTCCAGTACAGC 60.673 60.000 0.00 0.00 0.00 4.40
231 232 1.122632 TCCCGGTTTCCAGTACAGCA 61.123 55.000 0.00 0.00 0.00 4.41
232 233 0.953960 CCCGGTTTCCAGTACAGCAC 60.954 60.000 0.00 0.00 0.00 4.40
233 234 0.250124 CCGGTTTCCAGTACAGCACA 60.250 55.000 0.00 0.00 0.00 4.57
234 235 1.610624 CCGGTTTCCAGTACAGCACAT 60.611 52.381 0.00 0.00 0.00 3.21
235 236 2.354303 CCGGTTTCCAGTACAGCACATA 60.354 50.000 0.00 0.00 0.00 2.29
236 237 3.331150 CGGTTTCCAGTACAGCACATAA 58.669 45.455 0.00 0.00 0.00 1.90
237 238 3.370978 CGGTTTCCAGTACAGCACATAAG 59.629 47.826 0.00 0.00 0.00 1.73
238 239 4.324267 GGTTTCCAGTACAGCACATAAGT 58.676 43.478 0.00 0.00 0.00 2.24
239 240 5.484715 GGTTTCCAGTACAGCACATAAGTA 58.515 41.667 0.00 0.00 0.00 2.24
240 241 5.581085 GGTTTCCAGTACAGCACATAAGTAG 59.419 44.000 0.00 0.00 0.00 2.57
241 242 4.386867 TCCAGTACAGCACATAAGTAGC 57.613 45.455 0.00 0.00 0.00 3.58
242 243 3.767131 TCCAGTACAGCACATAAGTAGCA 59.233 43.478 0.00 0.00 0.00 3.49
243 244 4.405680 TCCAGTACAGCACATAAGTAGCAT 59.594 41.667 0.00 0.00 0.00 3.79
244 245 5.596772 TCCAGTACAGCACATAAGTAGCATA 59.403 40.000 0.00 0.00 0.00 3.14
245 246 6.097696 TCCAGTACAGCACATAAGTAGCATAA 59.902 38.462 0.00 0.00 0.00 1.90
254 255 0.822164 AAGTAGCATAACCGTCGGCT 59.178 50.000 12.28 0.52 40.26 5.52
310 311 3.570125 CCCGCTGTCTAGTTATCAGATGA 59.430 47.826 0.00 0.00 0.00 2.92
323 324 4.907879 ATCAGATGAATTTTCGGCCTTC 57.092 40.909 0.00 0.00 0.00 3.46
325 326 2.099756 CAGATGAATTTTCGGCCTTCCC 59.900 50.000 0.00 0.00 0.00 3.97
326 327 2.099405 GATGAATTTTCGGCCTTCCCA 58.901 47.619 0.00 0.00 0.00 4.37
328 329 2.534990 TGAATTTTCGGCCTTCCCATT 58.465 42.857 0.00 0.00 0.00 3.16
329 330 2.495669 TGAATTTTCGGCCTTCCCATTC 59.504 45.455 0.00 3.02 0.00 2.67
342 344 5.360999 GCCTTCCCATTCTTTTTAGCATAGT 59.639 40.000 0.00 0.00 0.00 2.12
350 352 7.363268 CCATTCTTTTTAGCATAGTGAGCCTTT 60.363 37.037 0.00 0.00 0.00 3.11
442 456 5.228665 GTTTAGTACTGTGTCCCTTGACTC 58.771 45.833 5.39 0.00 42.28 3.36
467 481 4.374689 TTGCACTAGGGTTCCAAACATA 57.625 40.909 0.00 0.00 0.00 2.29
483 497 4.558538 AACATAGCGAGGCATGAAAATC 57.441 40.909 0.00 0.00 0.00 2.17
579 600 2.432444 CTGCCGTCCTGGATTGTTAAA 58.568 47.619 0.00 0.00 42.00 1.52
580 601 2.817258 CTGCCGTCCTGGATTGTTAAAA 59.183 45.455 0.00 0.00 42.00 1.52
581 602 3.223435 TGCCGTCCTGGATTGTTAAAAA 58.777 40.909 0.00 0.00 42.00 1.94
582 603 3.004944 TGCCGTCCTGGATTGTTAAAAAC 59.995 43.478 0.00 0.00 42.00 2.43
583 604 3.254903 GCCGTCCTGGATTGTTAAAAACT 59.745 43.478 0.00 0.00 42.00 2.66
584 605 4.261867 GCCGTCCTGGATTGTTAAAAACTT 60.262 41.667 0.00 0.00 42.00 2.66
585 606 5.048573 GCCGTCCTGGATTGTTAAAAACTTA 60.049 40.000 0.00 0.00 42.00 2.24
586 607 6.515365 GCCGTCCTGGATTGTTAAAAACTTAA 60.515 38.462 0.00 0.00 42.00 1.85
587 608 7.427214 CCGTCCTGGATTGTTAAAAACTTAAA 58.573 34.615 0.00 0.00 42.00 1.52
626 647 6.918022 CCAAGTTACCTTTGACTGTTTGAATC 59.082 38.462 0.00 0.00 0.00 2.52
636 660 3.665190 ACTGTTTGAATCCTTCCGAGTC 58.335 45.455 0.00 0.00 36.10 3.36
662 690 4.267928 GCAACGAGGTCACACATAGATTAC 59.732 45.833 0.00 0.00 0.00 1.89
742 776 6.205853 AGGCTAGTAGAGTGATGAATTACGAG 59.794 42.308 0.00 0.00 0.00 4.18
744 778 7.073265 GCTAGTAGAGTGATGAATTACGAGTC 58.927 42.308 0.00 0.00 0.00 3.36
746 780 7.254227 AGTAGAGTGATGAATTACGAGTCTC 57.746 40.000 0.00 0.00 0.00 3.36
747 781 5.508200 AGAGTGATGAATTACGAGTCTCC 57.492 43.478 0.00 0.00 0.00 3.71
748 782 4.339814 AGAGTGATGAATTACGAGTCTCCC 59.660 45.833 0.00 0.00 0.00 4.30
749 783 4.282496 AGTGATGAATTACGAGTCTCCCT 58.718 43.478 0.00 0.00 0.00 4.20
773 816 2.436417 GGCAACAAGCTATCAACTCCA 58.564 47.619 0.00 0.00 44.79 3.86
849 893 1.076332 GGTGGAGTACGTGTGATTGC 58.924 55.000 0.00 0.00 0.00 3.56
856 900 1.127951 GTACGTGTGATTGCTTTCGGG 59.872 52.381 0.00 0.00 0.00 5.14
860 904 2.542824 CGTGTGATTGCTTTCGGGTTTT 60.543 45.455 0.00 0.00 0.00 2.43
861 905 3.453424 GTGTGATTGCTTTCGGGTTTTT 58.547 40.909 0.00 0.00 0.00 1.94
862 906 3.489416 GTGTGATTGCTTTCGGGTTTTTC 59.511 43.478 0.00 0.00 0.00 2.29
863 907 3.383185 TGTGATTGCTTTCGGGTTTTTCT 59.617 39.130 0.00 0.00 0.00 2.52
864 908 4.142049 TGTGATTGCTTTCGGGTTTTTCTT 60.142 37.500 0.00 0.00 0.00 2.52
868 912 2.223386 TGCTTTCGGGTTTTTCTTCACG 60.223 45.455 0.00 0.00 0.00 4.35
869 913 2.223409 GCTTTCGGGTTTTTCTTCACGT 60.223 45.455 0.00 0.00 0.00 4.49
949 1017 6.018180 CCCTTGTATTTAAGAGAATGTACGGC 60.018 42.308 0.00 0.00 0.00 5.68
965 1033 2.033602 GCGGCTTAACCACCCACT 59.966 61.111 0.00 0.00 39.03 4.00
966 1034 2.038837 GCGGCTTAACCACCCACTC 61.039 63.158 0.00 0.00 39.03 3.51
975 1043 3.652057 AACCACCCACTCCATATTGAG 57.348 47.619 2.30 2.30 38.37 3.02
1205 1303 2.279851 CGTTGGAGGTGACACGCA 60.280 61.111 0.00 0.00 0.00 5.24
1243 1341 2.111669 TGCTGCACCTGACAGTGG 59.888 61.111 0.00 0.00 38.24 4.00
1340 1456 2.048222 CTTCGACGGCAGGCTGAA 60.048 61.111 20.86 0.80 0.00 3.02
1341 1457 2.357034 TTCGACGGCAGGCTGAAC 60.357 61.111 20.86 9.21 0.00 3.18
1342 1458 3.158537 TTCGACGGCAGGCTGAACA 62.159 57.895 20.86 0.00 0.00 3.18
1348 1464 1.503542 GGCAGGCTGAACATCAACG 59.496 57.895 20.86 0.00 0.00 4.10
1450 1567 0.612453 GAAGTCGAGGTCCCAGGTCT 60.612 60.000 0.00 0.00 0.00 3.85
1466 1583 0.031721 GTCTGGAACGAGTCAACCGT 59.968 55.000 0.00 0.00 42.61 4.83
1505 1622 0.035458 GTGGCCTACTGCAACAGAGT 59.965 55.000 3.32 0.00 43.96 3.24
1513 1630 1.155042 CTGCAACAGAGTCCAGAAGC 58.845 55.000 0.00 0.00 32.44 3.86
1575 1692 2.156891 CGAAATCTCGCCGTTTCTCAAA 59.843 45.455 0.00 0.00 38.45 2.69
1576 1693 3.363575 CGAAATCTCGCCGTTTCTCAAAA 60.364 43.478 0.00 0.00 38.45 2.44
1577 1694 3.813529 AATCTCGCCGTTTCTCAAAAG 57.186 42.857 0.00 0.00 0.00 2.27
1579 1696 0.110192 CTCGCCGTTTCTCAAAAGCC 60.110 55.000 0.00 0.00 0.00 4.35
1580 1697 1.081442 CGCCGTTTCTCAAAAGCCC 60.081 57.895 0.00 0.00 0.00 5.19
1583 1700 0.598065 CCGTTTCTCAAAAGCCCCAG 59.402 55.000 0.00 0.00 0.00 4.45
1606 1723 2.171448 AGGATGAGGTTCGAGAAATGGG 59.829 50.000 0.00 0.00 0.00 4.00
1674 1794 2.612972 CGTGCAGAAGGACCACTACATT 60.613 50.000 0.00 0.00 31.56 2.71
1765 1885 1.148273 GACTGGGCCATCCGCAATA 59.852 57.895 6.72 0.00 40.31 1.90
1768 1888 0.599558 CTGGGCCATCCGCAATAATG 59.400 55.000 6.72 0.00 40.31 1.90
1769 1889 0.184692 TGGGCCATCCGCAATAATGA 59.815 50.000 0.00 0.00 40.31 2.57
1770 1890 1.203038 TGGGCCATCCGCAATAATGAT 60.203 47.619 0.00 0.00 40.31 2.45
1775 1895 4.572389 GGCCATCCGCAATAATGATAGTAG 59.428 45.833 0.00 0.00 40.31 2.57
1815 1935 1.746517 GGACAAGACGCCGGGATAT 59.253 57.895 2.18 0.00 0.00 1.63
1822 1942 2.591429 CGCCGGGATATGCTTGCA 60.591 61.111 2.18 0.00 0.00 4.08
1853 1973 0.324943 AGTAAGTGCGCCAAGTCCAT 59.675 50.000 4.18 0.00 0.00 3.41
2005 2141 4.078537 CGGGCCATGATGGTGAAAATATA 58.921 43.478 13.84 0.00 40.46 0.86
2037 2180 8.721133 ACCTTGTTAGATGTTTATTTTTCCCT 57.279 30.769 0.00 0.00 0.00 4.20
2038 2181 8.803235 ACCTTGTTAGATGTTTATTTTTCCCTC 58.197 33.333 0.00 0.00 0.00 4.30
2039 2182 7.968405 CCTTGTTAGATGTTTATTTTTCCCTCG 59.032 37.037 0.00 0.00 0.00 4.63
2040 2183 7.989416 TGTTAGATGTTTATTTTTCCCTCGT 57.011 32.000 0.00 0.00 0.00 4.18
2041 2184 9.504708 TTGTTAGATGTTTATTTTTCCCTCGTA 57.495 29.630 0.00 0.00 0.00 3.43
2042 2185 9.504708 TGTTAGATGTTTATTTTTCCCTCGTAA 57.495 29.630 0.00 0.00 0.00 3.18
2046 2189 9.908152 AGATGTTTATTTTTCCCTCGTAAAAAG 57.092 29.630 0.00 0.00 38.72 2.27
2047 2190 9.687210 GATGTTTATTTTTCCCTCGTAAAAAGT 57.313 29.630 0.00 0.00 38.72 2.66
2048 2191 8.859517 TGTTTATTTTTCCCTCGTAAAAAGTG 57.140 30.769 0.00 0.00 38.72 3.16
2049 2192 8.468399 TGTTTATTTTTCCCTCGTAAAAAGTGT 58.532 29.630 0.00 0.00 38.72 3.55
2050 2193 9.304731 GTTTATTTTTCCCTCGTAAAAAGTGTT 57.695 29.630 0.00 0.00 38.72 3.32
2051 2194 9.872721 TTTATTTTTCCCTCGTAAAAAGTGTTT 57.127 25.926 0.00 0.00 38.72 2.83
2052 2195 7.764695 ATTTTTCCCTCGTAAAAAGTGTTTG 57.235 32.000 0.00 0.00 38.72 2.93
2053 2196 5.900865 TTTCCCTCGTAAAAAGTGTTTGT 57.099 34.783 0.00 0.00 0.00 2.83
2054 2197 5.900865 TTCCCTCGTAAAAAGTGTTTGTT 57.099 34.783 0.00 0.00 0.00 2.83
2055 2198 5.900865 TCCCTCGTAAAAAGTGTTTGTTT 57.099 34.783 0.00 0.00 0.00 2.83
2056 2199 6.270156 TCCCTCGTAAAAAGTGTTTGTTTT 57.730 33.333 0.00 0.00 0.00 2.43
2057 2200 6.689554 TCCCTCGTAAAAAGTGTTTGTTTTT 58.310 32.000 0.00 0.00 39.72 1.94
2157 6632 6.093495 CGAACTCCATAAAATCTGCCAGTTTA 59.907 38.462 0.00 0.00 0.00 2.01
2193 7314 5.632034 AAAAAGTCACTCTACCAGGTTCT 57.368 39.130 0.00 0.00 0.00 3.01
2196 7317 4.120946 AGTCACTCTACCAGGTTCTCTT 57.879 45.455 0.00 0.00 0.00 2.85
2200 7321 3.128938 CACTCTACCAGGTTCTCTTACCG 59.871 52.174 0.00 0.00 43.21 4.02
2212 7335 2.512896 TCTCTTACCGACCCTCCATACT 59.487 50.000 0.00 0.00 0.00 2.12
2224 7347 7.214381 CGACCCTCCATACTTGTAATATTTGA 58.786 38.462 0.00 0.00 0.00 2.69
2255 7378 6.017440 GCTACAAAAACAACACATAGACTCCA 60.017 38.462 0.00 0.00 0.00 3.86
2307 7430 7.344913 AGAGCTCTCTTCATTCATATTGGTTT 58.655 34.615 11.45 0.00 36.31 3.27
2321 7445 7.829725 TCATATTGGTTTTGGACATCTCAAAG 58.170 34.615 0.00 0.00 35.81 2.77
2325 7449 6.537453 TGGTTTTGGACATCTCAAAGAAAA 57.463 33.333 0.00 0.00 35.81 2.29
2326 7450 6.940739 TGGTTTTGGACATCTCAAAGAAAAA 58.059 32.000 0.00 0.00 35.81 1.94
2351 7475 6.688073 AATCGGTTGGTGGAGAGAATATAT 57.312 37.500 0.00 0.00 0.00 0.86
2353 7477 7.792364 ATCGGTTGGTGGAGAGAATATATAA 57.208 36.000 0.00 0.00 0.00 0.98
2382 7506 6.672218 TCTTCATCCATATATTGATACCCGGT 59.328 38.462 0.00 0.00 0.00 5.28
2412 7536 6.597832 AGCATAGCTTAGGTGGTTAGATAG 57.402 41.667 0.00 0.00 33.89 2.08
2413 7537 6.315714 AGCATAGCTTAGGTGGTTAGATAGA 58.684 40.000 0.00 0.00 33.89 1.98
2414 7538 6.209788 AGCATAGCTTAGGTGGTTAGATAGAC 59.790 42.308 0.00 0.00 33.89 2.59
2421 7545 5.941555 AGGTGGTTAGATAGACTCTTTGG 57.058 43.478 0.00 0.00 35.28 3.28
2423 7547 4.715297 GGTGGTTAGATAGACTCTTTGGGA 59.285 45.833 0.00 0.00 35.28 4.37
2448 7574 4.335416 GAATCAGTCCACCCAGATTCAAA 58.665 43.478 0.00 0.00 43.50 2.69
2450 7576 4.387026 TCAGTCCACCCAGATTCAAATT 57.613 40.909 0.00 0.00 0.00 1.82
2456 7582 5.819901 GTCCACCCAGATTCAAATTCTAGAG 59.180 44.000 0.00 0.00 0.00 2.43
2457 7583 5.104360 TCCACCCAGATTCAAATTCTAGAGG 60.104 44.000 0.00 0.00 0.00 3.69
2459 7585 5.819901 CACCCAGATTCAAATTCTAGAGGTC 59.180 44.000 0.00 0.00 0.00 3.85
2463 7589 5.582269 CAGATTCAAATTCTAGAGGTCGCAA 59.418 40.000 0.00 0.00 0.00 4.85
2465 7591 3.262420 TCAAATTCTAGAGGTCGCAAGC 58.738 45.455 0.00 0.00 37.18 4.01
2466 7592 3.002791 CAAATTCTAGAGGTCGCAAGCA 58.997 45.455 0.00 0.00 37.18 3.91
2493 7619 9.316730 TGCTTGCATATTTTTCTGGATTTATTC 57.683 29.630 0.00 0.00 0.00 1.75
2515 7643 2.993899 CAGGTTCTTCGACGCTATTGTT 59.006 45.455 0.00 0.00 0.00 2.83
2519 7647 4.084223 GGTTCTTCGACGCTATTGTTTCAA 60.084 41.667 0.00 0.00 0.00 2.69
2521 7649 6.183360 GGTTCTTCGACGCTATTGTTTCAATA 60.183 38.462 0.00 2.87 0.00 1.90
2535 7663 4.580167 TGTTTCAATAGTATGGCATGCCTC 59.420 41.667 35.53 24.43 36.94 4.70
2536 7664 3.423539 TCAATAGTATGGCATGCCTCC 57.576 47.619 35.53 22.61 36.94 4.30
2554 7682 4.264460 CTCCCAACTATGAGGACTATGC 57.736 50.000 0.00 0.00 0.00 3.14
2599 7727 1.214175 TGCTTCCACCTTTGACCTTCA 59.786 47.619 0.00 0.00 0.00 3.02
2603 7731 4.096984 GCTTCCACCTTTGACCTTCATATG 59.903 45.833 0.00 0.00 0.00 1.78
2617 7745 2.571212 TCATATGAATGTCGGTTGGCC 58.429 47.619 1.98 0.00 34.50 5.36
2631 7759 4.760047 GGCCGCACTCATCACCGT 62.760 66.667 0.00 0.00 0.00 4.83
2632 7760 3.188786 GCCGCACTCATCACCGTC 61.189 66.667 0.00 0.00 0.00 4.79
2644 7772 2.034066 ACCGTCGACCCGTTCCTA 59.966 61.111 10.58 0.00 0.00 2.94
2699 7828 3.439540 CCACCATTTGCCCGACCG 61.440 66.667 0.00 0.00 0.00 4.79
2728 7857 2.375766 CGCACCACAAGAGCTCGAC 61.376 63.158 8.37 0.00 0.00 4.20
2756 7885 2.284921 CTCTGCCCCCAGTCCTCA 60.285 66.667 0.00 0.00 40.09 3.86
2757 7886 1.692042 CTCTGCCCCCAGTCCTCAT 60.692 63.158 0.00 0.00 40.09 2.90
2758 7887 1.690633 TCTGCCCCCAGTCCTCATC 60.691 63.158 0.00 0.00 40.09 2.92
2767 7896 1.080354 AGTCCTCATCCGTTCCCCA 59.920 57.895 0.00 0.00 0.00 4.96
2770 7899 1.077716 CCTCATCCGTTCCCCAACC 60.078 63.158 0.00 0.00 0.00 3.77
2792 7921 0.902048 CTGAGGAGGCCAGAGTCACA 60.902 60.000 5.01 0.00 33.65 3.58
2796 7925 1.476007 GGAGGCCAGAGTCACACACT 61.476 60.000 5.01 0.00 38.45 3.55
2805 7934 1.550524 GAGTCACACACTAGCCATCCA 59.449 52.381 0.00 0.00 34.41 3.41
2806 7935 1.552337 AGTCACACACTAGCCATCCAG 59.448 52.381 0.00 0.00 31.37 3.86
2844 7974 5.893824 TCCTTCATGTCATCTAGCTTCTACA 59.106 40.000 0.00 0.00 0.00 2.74
2847 7977 5.536260 TCATGTCATCTAGCTTCTACATGC 58.464 41.667 16.33 0.00 42.35 4.06
2853 7983 2.031944 TCTAGCTTCTACATGCGCTACG 60.032 50.000 9.73 0.00 34.14 3.51
2878 8008 0.970937 CCCACCCGAGCTAACTCTCA 60.971 60.000 0.00 0.00 41.09 3.27
2889 8019 3.327757 AGCTAACTCTCATGGGTGACAAA 59.672 43.478 0.70 0.00 0.00 2.83
2892 8022 3.131709 ACTCTCATGGGTGACAAACTG 57.868 47.619 0.70 0.00 0.00 3.16
2897 8027 1.267806 CATGGGTGACAAACTGCAGAC 59.732 52.381 23.35 6.57 0.00 3.51
2900 8030 1.230324 GGTGACAAACTGCAGACTCC 58.770 55.000 23.35 11.73 0.00 3.85
2904 8034 1.940613 GACAAACTGCAGACTCCGTTT 59.059 47.619 23.35 7.23 0.00 3.60
2909 8039 1.079503 CTGCAGACTCCGTTTTAGCC 58.920 55.000 8.42 0.00 0.00 3.93
2913 8043 1.053424 AGACTCCGTTTTAGCCACCA 58.947 50.000 0.00 0.00 0.00 4.17
2916 8046 2.817844 GACTCCGTTTTAGCCACCATTT 59.182 45.455 0.00 0.00 0.00 2.32
2918 8048 1.271102 TCCGTTTTAGCCACCATTTGC 59.729 47.619 0.00 0.00 0.00 3.68
2919 8049 1.671556 CCGTTTTAGCCACCATTTGCC 60.672 52.381 0.00 0.00 0.00 4.52
2920 8050 1.671556 CGTTTTAGCCACCATTTGCCC 60.672 52.381 0.00 0.00 0.00 5.36
2921 8051 1.346068 GTTTTAGCCACCATTTGCCCA 59.654 47.619 0.00 0.00 0.00 5.36
2924 8054 4.086547 GCCACCATTTGCCCAGCC 62.087 66.667 0.00 0.00 0.00 4.85
2925 8055 2.604079 CCACCATTTGCCCAGCCA 60.604 61.111 0.00 0.00 0.00 4.75
2979 8109 2.555199 CTTCTCCCGCCACTTATGAAG 58.445 52.381 0.00 0.00 0.00 3.02
2988 8118 2.700897 GCCACTTATGAAGCTCTCCCTA 59.299 50.000 0.00 0.00 0.00 3.53
3000 8130 1.232216 CTCCCTACCCCCGCTCTTA 59.768 63.158 0.00 0.00 0.00 2.10
3062 8192 5.083821 ACCACTTGCACCAAGGTATATTTT 58.916 37.500 9.50 0.00 44.81 1.82
3064 8194 5.184864 CCACTTGCACCAAGGTATATTTTCA 59.815 40.000 9.50 0.00 44.81 2.69
3066 8196 6.753279 CACTTGCACCAAGGTATATTTTCATG 59.247 38.462 9.50 0.00 44.81 3.07
3110 8240 5.416326 AGTCTAGCTTCTTGTAGATTCGTGT 59.584 40.000 0.00 0.00 0.00 4.49
3129 8259 4.090498 CGTGTAGATGGCATATGATTCACG 59.910 45.833 19.75 19.75 38.70 4.35
3164 8296 4.646040 TGCCATCATGGTAGAGGATTTTTG 59.354 41.667 5.31 0.00 40.46 2.44
3188 8320 3.301794 TGATTCACCATCATCCTTGGG 57.698 47.619 0.00 0.00 36.94 4.12
3190 8322 1.002069 TTCACCATCATCCTTGGGCT 58.998 50.000 0.00 0.00 38.64 5.19
3193 8325 2.107031 TCACCATCATCCTTGGGCTATG 59.893 50.000 0.00 0.00 38.64 2.23
3212 8344 6.857964 GGCTATGTTGATGTTGATTTATTCGG 59.142 38.462 0.00 0.00 0.00 4.30
3218 8362 6.662414 TGATGTTGATTTATTCGGTGAGAC 57.338 37.500 0.00 0.00 0.00 3.36
3236 8380 5.758296 GTGAGACTTTGTTGATGGTTACTCA 59.242 40.000 0.00 0.00 0.00 3.41
3241 8385 4.782019 TTGTTGATGGTTACTCAATGGC 57.218 40.909 0.00 0.00 35.26 4.40
3243 8387 5.172687 TGTTGATGGTTACTCAATGGCTA 57.827 39.130 0.00 0.00 35.26 3.93
3251 8395 6.013379 TGGTTACTCAATGGCTAATGGAAAA 58.987 36.000 0.00 0.00 0.00 2.29
3266 8410 1.615919 GGAAAATGGGAGGAAGGCGAA 60.616 52.381 0.00 0.00 0.00 4.70
3272 8416 0.322546 GGGAGGAAGGCGAATTGTGT 60.323 55.000 0.00 0.00 0.00 3.72
3308 8452 2.345641 GTCGTTTGACATGTCATCGGAG 59.654 50.000 32.84 22.35 44.82 4.63
3310 8454 2.092681 CGTTTGACATGTCATCGGAGTG 59.907 50.000 28.32 10.98 39.64 3.51
3318 8462 0.532573 GTCATCGGAGTGGAGAAGCA 59.467 55.000 0.00 0.00 0.00 3.91
3320 8464 0.534412 CATCGGAGTGGAGAAGCAGT 59.466 55.000 0.00 0.00 0.00 4.40
3342 8486 5.128499 AGTCCATGCTATGCTCATCCTATAC 59.872 44.000 0.00 0.00 0.00 1.47
3356 8500 2.860679 TCCTATACCCTGTAGTGACCCA 59.139 50.000 0.00 0.00 0.00 4.51
3357 8501 3.117246 TCCTATACCCTGTAGTGACCCAG 60.117 52.174 0.00 0.00 0.00 4.45
3416 8563 2.931246 CAGTATGCTGGCACACACA 58.069 52.632 6.76 0.00 39.01 3.72
3423 8570 1.831389 GCTGGCACACACACAGTACG 61.831 60.000 0.00 0.00 34.79 3.67
3429 8576 3.054166 GCACACACACAGTACGTCAATA 58.946 45.455 0.00 0.00 0.00 1.90
3457 8604 7.668525 ATATCAGAGTGCAATCACATGTATG 57.331 36.000 17.53 3.95 45.49 2.39
3458 8605 4.193865 TCAGAGTGCAATCACATGTATGG 58.806 43.478 17.53 0.00 45.49 2.74
3469 8616 8.289618 GCAATCACATGTATGGATAACGTAAAT 58.710 33.333 0.00 0.00 0.00 1.40
3512 8659 2.073816 CAGCGGAAACAAATAGTCGGT 58.926 47.619 0.00 0.00 0.00 4.69
3513 8660 2.073816 AGCGGAAACAAATAGTCGGTG 58.926 47.619 0.00 0.00 0.00 4.94
3536 8683 0.107703 GAGTCCCATCAACGCCATCA 60.108 55.000 0.00 0.00 0.00 3.07
3539 8686 1.024046 TCCCATCAACGCCATCAACG 61.024 55.000 0.00 0.00 0.00 4.10
3639 8786 5.680408 GCCGTGTAGGTCAGTACATTGAATA 60.680 44.000 0.00 0.00 43.70 1.75
3657 8804 5.620206 TGAATATACCGGCAAGATCACAAT 58.380 37.500 0.00 0.00 0.00 2.71
3659 8806 7.220740 TGAATATACCGGCAAGATCACAATAA 58.779 34.615 0.00 0.00 0.00 1.40
3669 8816 7.542025 GGCAAGATCACAATAAGAGAAAACAT 58.458 34.615 0.00 0.00 0.00 2.71
3710 8857 1.202452 GCAATATGGCTTTGTGGCTCC 60.202 52.381 0.00 0.00 42.34 4.70
3773 8922 6.508030 TGCCTACATCAAAGGATATAACCA 57.492 37.500 1.42 0.00 36.08 3.67
3900 9051 4.393834 TGAGAGTTCCGAGATAGATCCAG 58.606 47.826 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.590222 AGGCCTTTGTCATGTTCTTCAAAT 59.410 37.500 0.00 0.00 31.08 2.32
1 2 3.960102 AGGCCTTTGTCATGTTCTTCAAA 59.040 39.130 0.00 0.00 0.00 2.69
2 3 3.318839 CAGGCCTTTGTCATGTTCTTCAA 59.681 43.478 0.00 0.00 0.00 2.69
3 4 2.886523 CAGGCCTTTGTCATGTTCTTCA 59.113 45.455 0.00 0.00 0.00 3.02
4 5 2.887152 ACAGGCCTTTGTCATGTTCTTC 59.113 45.455 0.00 0.00 0.00 2.87
5 6 2.887152 GACAGGCCTTTGTCATGTTCTT 59.113 45.455 17.88 0.00 45.32 2.52
6 7 2.508526 GACAGGCCTTTGTCATGTTCT 58.491 47.619 17.88 0.00 45.32 3.01
7 8 1.197721 CGACAGGCCTTTGTCATGTTC 59.802 52.381 21.34 3.22 46.11 3.18
8 9 1.238439 CGACAGGCCTTTGTCATGTT 58.762 50.000 21.34 0.00 46.11 2.71
9 10 0.108585 ACGACAGGCCTTTGTCATGT 59.891 50.000 21.34 11.43 46.11 3.21
10 11 0.518636 CACGACAGGCCTTTGTCATG 59.481 55.000 21.34 14.64 46.11 3.07
11 12 0.606401 CCACGACAGGCCTTTGTCAT 60.606 55.000 21.34 6.89 46.11 3.06
12 13 1.227823 CCACGACAGGCCTTTGTCA 60.228 57.895 21.34 0.00 46.11 3.58
13 14 0.534203 TTCCACGACAGGCCTTTGTC 60.534 55.000 13.82 13.82 43.14 3.18
14 15 0.106918 TTTCCACGACAGGCCTTTGT 60.107 50.000 0.00 0.00 0.00 2.83
15 16 0.593128 CTTTCCACGACAGGCCTTTG 59.407 55.000 0.00 0.00 0.00 2.77
16 17 0.472471 TCTTTCCACGACAGGCCTTT 59.528 50.000 0.00 0.00 0.00 3.11
17 18 0.250338 GTCTTTCCACGACAGGCCTT 60.250 55.000 0.00 0.00 0.00 4.35
18 19 1.371558 GTCTTTCCACGACAGGCCT 59.628 57.895 0.00 0.00 0.00 5.19
19 20 1.671379 GGTCTTTCCACGACAGGCC 60.671 63.158 0.00 0.00 35.97 5.19
20 21 0.951040 CAGGTCTTTCCACGACAGGC 60.951 60.000 0.00 0.00 39.02 4.85
21 22 0.951040 GCAGGTCTTTCCACGACAGG 60.951 60.000 0.00 0.00 39.02 4.00
22 23 0.034059 AGCAGGTCTTTCCACGACAG 59.966 55.000 0.00 0.00 39.02 3.51
23 24 0.033504 GAGCAGGTCTTTCCACGACA 59.966 55.000 0.00 0.00 39.02 4.35
24 25 0.033504 TGAGCAGGTCTTTCCACGAC 59.966 55.000 0.38 0.00 39.02 4.34
25 26 0.756294 TTGAGCAGGTCTTTCCACGA 59.244 50.000 0.38 0.00 39.02 4.35
26 27 1.734465 GATTGAGCAGGTCTTTCCACG 59.266 52.381 0.38 0.00 39.02 4.94
27 28 2.485814 GTGATTGAGCAGGTCTTTCCAC 59.514 50.000 0.38 1.04 39.02 4.02
28 29 2.553028 GGTGATTGAGCAGGTCTTTCCA 60.553 50.000 0.38 0.00 39.02 3.53
29 30 2.087646 GGTGATTGAGCAGGTCTTTCC 58.912 52.381 0.38 0.00 0.00 3.13
30 31 2.485814 GTGGTGATTGAGCAGGTCTTTC 59.514 50.000 0.38 0.00 30.97 2.62
31 32 2.107204 AGTGGTGATTGAGCAGGTCTTT 59.893 45.455 0.38 0.00 30.97 2.52
32 33 1.701847 AGTGGTGATTGAGCAGGTCTT 59.298 47.619 0.38 0.00 30.97 3.01
33 34 1.356124 AGTGGTGATTGAGCAGGTCT 58.644 50.000 0.38 0.00 30.97 3.85
34 35 2.191128 AAGTGGTGATTGAGCAGGTC 57.809 50.000 0.00 0.00 30.97 3.85
35 36 2.664402 AAAGTGGTGATTGAGCAGGT 57.336 45.000 0.00 0.00 30.97 4.00
36 37 5.220662 CGTTATAAAGTGGTGATTGAGCAGG 60.221 44.000 0.00 0.00 30.97 4.85
37 38 5.580691 TCGTTATAAAGTGGTGATTGAGCAG 59.419 40.000 0.00 0.00 30.97 4.24
38 39 5.483811 TCGTTATAAAGTGGTGATTGAGCA 58.516 37.500 0.00 0.00 0.00 4.26
39 40 5.581085 ACTCGTTATAAAGTGGTGATTGAGC 59.419 40.000 5.65 0.00 0.00 4.26
40 41 6.020599 CGACTCGTTATAAAGTGGTGATTGAG 60.021 42.308 5.65 0.00 0.00 3.02
41 42 5.803461 CGACTCGTTATAAAGTGGTGATTGA 59.197 40.000 5.65 0.00 0.00 2.57
42 43 5.575606 ACGACTCGTTATAAAGTGGTGATTG 59.424 40.000 0.00 0.00 36.35 2.67
43 44 5.717119 ACGACTCGTTATAAAGTGGTGATT 58.283 37.500 0.00 0.00 36.35 2.57
44 45 5.320549 ACGACTCGTTATAAAGTGGTGAT 57.679 39.130 0.00 0.00 36.35 3.06
45 46 4.379813 GGACGACTCGTTATAAAGTGGTGA 60.380 45.833 5.37 0.00 41.37 4.02
46 47 3.855950 GGACGACTCGTTATAAAGTGGTG 59.144 47.826 5.37 2.58 41.37 4.17
47 48 3.507233 TGGACGACTCGTTATAAAGTGGT 59.493 43.478 5.37 5.05 41.37 4.16
48 49 3.855950 GTGGACGACTCGTTATAAAGTGG 59.144 47.826 5.37 2.56 41.37 4.00
49 50 4.478699 TGTGGACGACTCGTTATAAAGTG 58.521 43.478 5.37 0.00 41.37 3.16
50 51 4.771590 TGTGGACGACTCGTTATAAAGT 57.228 40.909 5.37 0.00 41.37 2.66
51 52 5.431650 GTTGTGGACGACTCGTTATAAAG 57.568 43.478 5.37 0.00 41.37 1.85
65 66 2.347452 CGATGTTATGGACGTTGTGGAC 59.653 50.000 0.00 0.00 0.00 4.02
66 67 2.612604 CGATGTTATGGACGTTGTGGA 58.387 47.619 0.00 0.00 0.00 4.02
67 68 1.062002 GCGATGTTATGGACGTTGTGG 59.938 52.381 0.00 0.00 32.15 4.17
68 69 1.062002 GGCGATGTTATGGACGTTGTG 59.938 52.381 0.00 0.00 32.15 3.33
69 70 1.365699 GGCGATGTTATGGACGTTGT 58.634 50.000 0.00 0.00 32.15 3.32
70 71 0.300491 CGGCGATGTTATGGACGTTG 59.700 55.000 0.00 0.00 34.60 4.10
71 72 1.426041 GCGGCGATGTTATGGACGTT 61.426 55.000 12.98 0.00 41.89 3.99
72 73 1.881252 GCGGCGATGTTATGGACGT 60.881 57.895 12.98 0.00 41.89 4.34
73 74 1.425267 TTGCGGCGATGTTATGGACG 61.425 55.000 12.98 0.00 42.83 4.79
74 75 0.304705 CTTGCGGCGATGTTATGGAC 59.695 55.000 12.98 0.00 0.00 4.02
75 76 0.813610 CCTTGCGGCGATGTTATGGA 60.814 55.000 12.98 0.00 0.00 3.41
76 77 0.813610 TCCTTGCGGCGATGTTATGG 60.814 55.000 12.98 1.95 0.00 2.74
77 78 1.229428 ATCCTTGCGGCGATGTTATG 58.771 50.000 12.98 0.00 0.00 1.90
78 79 1.967319 AATCCTTGCGGCGATGTTAT 58.033 45.000 12.98 0.00 0.00 1.89
79 80 2.479837 CTAATCCTTGCGGCGATGTTA 58.520 47.619 12.98 0.00 0.00 2.41
80 81 1.299541 CTAATCCTTGCGGCGATGTT 58.700 50.000 12.98 0.00 0.00 2.71
81 82 1.160329 GCTAATCCTTGCGGCGATGT 61.160 55.000 12.98 0.00 0.00 3.06
82 83 1.571460 GCTAATCCTTGCGGCGATG 59.429 57.895 12.98 0.00 0.00 3.84
83 84 1.598130 GGCTAATCCTTGCGGCGAT 60.598 57.895 12.98 0.00 0.00 4.58
84 85 2.203015 GGCTAATCCTTGCGGCGA 60.203 61.111 12.98 0.00 0.00 5.54
85 86 2.513666 TGGCTAATCCTTGCGGCG 60.514 61.111 0.51 0.51 35.26 6.46
86 87 0.748005 TTCTGGCTAATCCTTGCGGC 60.748 55.000 0.00 0.00 35.26 6.53
87 88 1.303309 CTTCTGGCTAATCCTTGCGG 58.697 55.000 0.00 0.00 35.26 5.69
88 89 1.303309 CCTTCTGGCTAATCCTTGCG 58.697 55.000 0.00 0.00 35.26 4.85
89 90 1.064389 ACCCTTCTGGCTAATCCTTGC 60.064 52.381 0.00 0.00 37.83 4.01
90 91 2.648059 CACCCTTCTGGCTAATCCTTG 58.352 52.381 0.00 0.00 37.83 3.61
91 92 1.064389 GCACCCTTCTGGCTAATCCTT 60.064 52.381 0.00 0.00 37.83 3.36
92 93 0.548510 GCACCCTTCTGGCTAATCCT 59.451 55.000 0.00 0.00 37.83 3.24
93 94 0.815615 CGCACCCTTCTGGCTAATCC 60.816 60.000 0.00 0.00 37.83 3.01
94 95 0.178068 TCGCACCCTTCTGGCTAATC 59.822 55.000 0.00 0.00 37.83 1.75
95 96 0.839946 ATCGCACCCTTCTGGCTAAT 59.160 50.000 0.00 0.00 37.83 1.73
96 97 0.618458 AATCGCACCCTTCTGGCTAA 59.382 50.000 0.00 0.00 37.83 3.09
97 98 0.618458 AAATCGCACCCTTCTGGCTA 59.382 50.000 0.00 0.00 37.83 3.93
98 99 0.678048 GAAATCGCACCCTTCTGGCT 60.678 55.000 0.00 0.00 37.83 4.75
99 100 0.960364 TGAAATCGCACCCTTCTGGC 60.960 55.000 0.00 0.00 37.83 4.85
100 101 1.672881 GATGAAATCGCACCCTTCTGG 59.327 52.381 0.00 0.00 34.64 3.86
101 102 1.672881 GGATGAAATCGCACCCTTCTG 59.327 52.381 0.00 0.00 46.86 3.02
102 103 1.281867 TGGATGAAATCGCACCCTTCT 59.718 47.619 0.00 0.00 46.86 2.85
103 104 1.672881 CTGGATGAAATCGCACCCTTC 59.327 52.381 0.00 0.00 46.86 3.46
104 105 1.004745 ACTGGATGAAATCGCACCCTT 59.995 47.619 0.00 0.00 46.86 3.95
105 106 0.620556 ACTGGATGAAATCGCACCCT 59.379 50.000 0.00 0.00 46.86 4.34
106 107 1.017387 GACTGGATGAAATCGCACCC 58.983 55.000 0.00 0.00 46.86 4.61
107 108 1.667724 CAGACTGGATGAAATCGCACC 59.332 52.381 0.00 0.00 46.86 5.01
108 109 2.606725 CTCAGACTGGATGAAATCGCAC 59.393 50.000 1.81 0.00 46.86 5.34
109 110 2.234661 ACTCAGACTGGATGAAATCGCA 59.765 45.455 1.81 0.00 46.86 5.10
110 111 2.898705 ACTCAGACTGGATGAAATCGC 58.101 47.619 1.81 0.00 46.86 4.58
111 112 4.047822 GCTACTCAGACTGGATGAAATCG 58.952 47.826 1.81 0.00 46.86 3.34
112 113 5.275067 AGCTACTCAGACTGGATGAAATC 57.725 43.478 1.81 0.00 44.55 2.17
113 114 6.239543 CCATAGCTACTCAGACTGGATGAAAT 60.240 42.308 1.81 0.00 0.00 2.17
114 115 5.069648 CCATAGCTACTCAGACTGGATGAAA 59.930 44.000 1.81 0.00 0.00 2.69
115 116 4.586421 CCATAGCTACTCAGACTGGATGAA 59.414 45.833 1.81 0.00 0.00 2.57
116 117 4.148079 CCATAGCTACTCAGACTGGATGA 58.852 47.826 1.81 0.00 0.00 2.92
117 118 3.305950 GCCATAGCTACTCAGACTGGATG 60.306 52.174 10.78 0.00 35.50 3.51
118 119 2.896685 GCCATAGCTACTCAGACTGGAT 59.103 50.000 10.78 0.00 35.50 3.41
119 120 2.311463 GCCATAGCTACTCAGACTGGA 58.689 52.381 10.78 0.00 35.50 3.86
120 121 1.342819 GGCCATAGCTACTCAGACTGG 59.657 57.143 0.00 0.00 39.73 4.00
121 122 2.295909 GAGGCCATAGCTACTCAGACTG 59.704 54.545 5.01 0.00 39.73 3.51
122 123 2.091610 TGAGGCCATAGCTACTCAGACT 60.092 50.000 5.01 0.00 39.73 3.24
123 124 2.311463 TGAGGCCATAGCTACTCAGAC 58.689 52.381 5.01 0.00 39.73 3.51
124 125 2.755952 TGAGGCCATAGCTACTCAGA 57.244 50.000 5.01 0.00 39.73 3.27
125 126 2.036992 CCTTGAGGCCATAGCTACTCAG 59.963 54.545 5.01 6.69 38.18 3.35
126 127 2.042464 CCTTGAGGCCATAGCTACTCA 58.958 52.381 5.01 7.50 36.06 3.41
127 128 2.298729 CTCCTTGAGGCCATAGCTACTC 59.701 54.545 5.01 0.00 39.73 2.59
128 129 2.324541 CTCCTTGAGGCCATAGCTACT 58.675 52.381 5.01 0.00 39.73 2.57
129 130 1.270571 GCTCCTTGAGGCCATAGCTAC 60.271 57.143 5.01 0.00 39.73 3.58
130 131 1.051812 GCTCCTTGAGGCCATAGCTA 58.948 55.000 5.01 0.00 39.73 3.32
131 132 0.693767 AGCTCCTTGAGGCCATAGCT 60.694 55.000 5.01 6.61 39.73 3.32
132 133 0.250252 GAGCTCCTTGAGGCCATAGC 60.250 60.000 5.01 4.12 38.76 2.97
133 134 0.396060 GGAGCTCCTTGAGGCCATAG 59.604 60.000 26.25 0.00 34.44 2.23
134 135 0.326522 TGGAGCTCCTTGAGGCCATA 60.327 55.000 32.28 6.14 36.82 2.74
135 136 0.992431 ATGGAGCTCCTTGAGGCCAT 60.992 55.000 32.28 13.58 36.82 4.40
136 137 1.617536 ATGGAGCTCCTTGAGGCCA 60.618 57.895 32.28 11.70 36.82 5.36
137 138 1.148048 GATGGAGCTCCTTGAGGCC 59.852 63.158 32.28 11.02 36.82 5.19
138 139 0.254178 TTGATGGAGCTCCTTGAGGC 59.746 55.000 32.28 14.97 36.82 4.70
139 140 2.795231 TTTGATGGAGCTCCTTGAGG 57.205 50.000 32.28 0.00 36.82 3.86
140 141 3.212685 GGATTTGATGGAGCTCCTTGAG 58.787 50.000 32.28 0.00 36.82 3.02
141 142 2.577563 TGGATTTGATGGAGCTCCTTGA 59.422 45.455 32.28 18.82 36.82 3.02
142 143 2.950309 CTGGATTTGATGGAGCTCCTTG 59.050 50.000 32.28 8.91 36.82 3.61
143 144 2.091994 CCTGGATTTGATGGAGCTCCTT 60.092 50.000 32.28 26.58 36.82 3.36
144 145 1.493871 CCTGGATTTGATGGAGCTCCT 59.506 52.381 32.28 18.41 36.82 3.69
145 146 1.478288 CCCTGGATTTGATGGAGCTCC 60.478 57.143 26.78 26.78 0.00 4.70
146 147 1.978454 CCCTGGATTTGATGGAGCTC 58.022 55.000 4.71 4.71 0.00 4.09
147 148 0.106318 GCCCTGGATTTGATGGAGCT 60.106 55.000 0.00 0.00 0.00 4.09
148 149 0.396139 TGCCCTGGATTTGATGGAGC 60.396 55.000 0.00 0.00 0.00 4.70
149 150 2.236766 GATGCCCTGGATTTGATGGAG 58.763 52.381 0.00 0.00 0.00 3.86
150 151 1.133388 GGATGCCCTGGATTTGATGGA 60.133 52.381 0.00 0.00 0.00 3.41
151 152 1.335145 GGATGCCCTGGATTTGATGG 58.665 55.000 0.00 0.00 0.00 3.51
152 153 0.956633 CGGATGCCCTGGATTTGATG 59.043 55.000 0.00 0.00 0.00 3.07
153 154 0.846015 TCGGATGCCCTGGATTTGAT 59.154 50.000 0.00 0.00 0.00 2.57
154 155 0.181114 CTCGGATGCCCTGGATTTGA 59.819 55.000 0.00 0.00 0.00 2.69
155 156 0.107017 ACTCGGATGCCCTGGATTTG 60.107 55.000 0.00 0.00 0.00 2.32
156 157 0.181350 GACTCGGATGCCCTGGATTT 59.819 55.000 0.00 0.00 0.00 2.17
157 158 1.832912 GACTCGGATGCCCTGGATT 59.167 57.895 0.00 0.00 0.00 3.01
158 159 2.502492 CGACTCGGATGCCCTGGAT 61.502 63.158 0.00 0.00 0.00 3.41
159 160 3.147595 CGACTCGGATGCCCTGGA 61.148 66.667 0.00 0.00 0.00 3.86
170 171 3.499737 GCATTGGTGCCCGACTCG 61.500 66.667 0.00 0.00 45.76 4.18
179 180 2.798501 CGTACGCGAGGCATTGGTG 61.799 63.158 15.93 0.00 41.33 4.17
180 181 2.508439 CGTACGCGAGGCATTGGT 60.508 61.111 15.93 0.00 41.33 3.67
181 182 2.202690 TCGTACGCGAGGCATTGG 60.203 61.111 15.93 0.00 42.81 3.16
189 190 2.483745 CTCCTGCTTCGTACGCGA 59.516 61.111 15.93 0.28 46.36 5.87
190 191 3.248171 GCTCCTGCTTCGTACGCG 61.248 66.667 11.24 3.53 36.39 6.01
202 203 4.658786 AACCGGGACCCAGCTCCT 62.659 66.667 12.15 0.00 0.00 3.69
203 204 3.623703 GAAACCGGGACCCAGCTCC 62.624 68.421 12.15 0.00 0.00 4.70
204 205 2.046217 GAAACCGGGACCCAGCTC 60.046 66.667 12.15 0.00 0.00 4.09
205 206 3.647771 GGAAACCGGGACCCAGCT 61.648 66.667 12.15 0.00 0.00 4.24
206 207 3.920093 CTGGAAACCGGGACCCAGC 62.920 68.421 20.32 0.00 39.59 4.85
207 208 2.351276 CTGGAAACCGGGACCCAG 59.649 66.667 19.27 19.27 40.01 4.45
208 209 1.152074 TACTGGAAACCGGGACCCA 60.152 57.895 12.15 8.66 33.40 4.51
209 210 1.297689 GTACTGGAAACCGGGACCC 59.702 63.158 6.32 0.00 37.77 4.46
210 211 0.036671 CTGTACTGGAAACCGGGACC 60.037 60.000 6.32 6.65 42.93 4.46
211 212 0.672711 GCTGTACTGGAAACCGGGAC 60.673 60.000 6.32 5.12 43.84 4.46
212 213 1.122632 TGCTGTACTGGAAACCGGGA 61.123 55.000 6.32 0.00 33.40 5.14
213 214 0.953960 GTGCTGTACTGGAAACCGGG 60.954 60.000 6.32 0.00 33.40 5.73
214 215 0.250124 TGTGCTGTACTGGAAACCGG 60.250 55.000 0.00 0.00 35.68 5.28
215 216 1.808411 ATGTGCTGTACTGGAAACCG 58.192 50.000 1.65 0.00 0.00 4.44
216 217 4.324267 ACTTATGTGCTGTACTGGAAACC 58.676 43.478 1.65 0.00 0.00 3.27
217 218 5.063564 GCTACTTATGTGCTGTACTGGAAAC 59.936 44.000 1.65 0.00 0.00 2.78
218 219 5.175859 GCTACTTATGTGCTGTACTGGAAA 58.824 41.667 1.65 0.00 0.00 3.13
219 220 4.221924 TGCTACTTATGTGCTGTACTGGAA 59.778 41.667 1.65 0.00 0.00 3.53
220 221 3.767131 TGCTACTTATGTGCTGTACTGGA 59.233 43.478 1.65 0.00 0.00 3.86
221 222 4.123497 TGCTACTTATGTGCTGTACTGG 57.877 45.455 1.65 0.00 0.00 4.00
222 223 6.201044 GGTTATGCTACTTATGTGCTGTACTG 59.799 42.308 0.00 0.00 0.00 2.74
223 224 6.281405 GGTTATGCTACTTATGTGCTGTACT 58.719 40.000 0.00 0.00 0.00 2.73
224 225 5.175126 CGGTTATGCTACTTATGTGCTGTAC 59.825 44.000 0.00 0.00 0.00 2.90
225 226 5.163488 ACGGTTATGCTACTTATGTGCTGTA 60.163 40.000 0.00 0.00 0.00 2.74
226 227 4.119862 CGGTTATGCTACTTATGTGCTGT 58.880 43.478 0.00 0.00 0.00 4.40
227 228 4.119862 ACGGTTATGCTACTTATGTGCTG 58.880 43.478 0.00 0.00 0.00 4.41
228 229 4.369182 GACGGTTATGCTACTTATGTGCT 58.631 43.478 0.00 0.00 0.00 4.40
229 230 3.181774 CGACGGTTATGCTACTTATGTGC 59.818 47.826 0.00 0.00 0.00 4.57
230 231 3.734231 CCGACGGTTATGCTACTTATGTG 59.266 47.826 5.48 0.00 0.00 3.21
231 232 3.797865 GCCGACGGTTATGCTACTTATGT 60.798 47.826 16.73 0.00 0.00 2.29
232 233 2.729882 GCCGACGGTTATGCTACTTATG 59.270 50.000 16.73 0.00 0.00 1.90
233 234 2.626743 AGCCGACGGTTATGCTACTTAT 59.373 45.455 16.73 0.00 30.97 1.73
234 235 2.026641 AGCCGACGGTTATGCTACTTA 58.973 47.619 16.73 0.00 30.97 2.24
235 236 0.822164 AGCCGACGGTTATGCTACTT 59.178 50.000 16.73 0.00 30.97 2.24
236 237 0.102481 CAGCCGACGGTTATGCTACT 59.898 55.000 16.73 0.00 31.69 2.57
237 238 0.874607 CCAGCCGACGGTTATGCTAC 60.875 60.000 16.73 0.00 31.69 3.58
238 239 1.440060 CCAGCCGACGGTTATGCTA 59.560 57.895 16.73 0.00 31.69 3.49
239 240 2.186903 CCAGCCGACGGTTATGCT 59.813 61.111 16.73 2.39 33.52 3.79
240 241 2.638330 TAGCCAGCCGACGGTTATGC 62.638 60.000 16.73 15.19 0.00 3.14
241 242 0.597637 CTAGCCAGCCGACGGTTATG 60.598 60.000 16.73 11.84 0.00 1.90
242 243 1.740285 CTAGCCAGCCGACGGTTAT 59.260 57.895 16.73 1.66 0.00 1.89
243 244 3.072486 GCTAGCCAGCCGACGGTTA 62.072 63.158 16.73 0.00 42.37 2.85
244 245 4.452733 GCTAGCCAGCCGACGGTT 62.453 66.667 16.73 6.58 42.37 4.44
254 255 2.237643 TGAAATTAAGGACCGCTAGCCA 59.762 45.455 9.66 0.00 0.00 4.75
266 267 8.807581 GCGGGAAATCTAAAATGTGAAATTAAG 58.192 33.333 0.00 0.00 0.00 1.85
290 291 7.706281 AAATTCATCTGATAACTAGACAGCG 57.294 36.000 0.00 0.00 0.00 5.18
310 311 2.820178 AGAATGGGAAGGCCGAAAATT 58.180 42.857 0.00 0.00 33.83 1.82
323 324 5.221126 GGCTCACTATGCTAAAAAGAATGGG 60.221 44.000 0.00 0.00 0.00 4.00
325 326 6.690194 AGGCTCACTATGCTAAAAAGAATG 57.310 37.500 0.00 0.00 0.00 2.67
326 327 7.148000 GGAAAGGCTCACTATGCTAAAAAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
328 329 5.648092 GGAAAGGCTCACTATGCTAAAAAGA 59.352 40.000 0.00 0.00 0.00 2.52
329 330 5.649831 AGGAAAGGCTCACTATGCTAAAAAG 59.350 40.000 0.00 0.00 0.00 2.27
442 456 2.107950 TGGAACCCTAGTGCAAATCG 57.892 50.000 0.00 0.00 0.00 3.34
467 481 0.729116 CACGATTTTCATGCCTCGCT 59.271 50.000 0.00 0.00 34.60 4.93
483 497 0.249784 AGCATGATAGCAGCCTCACG 60.250 55.000 0.00 0.00 36.85 4.35
579 600 5.125739 TGGTCCGTGAACACATTTTAAGTTT 59.874 36.000 5.80 0.00 0.00 2.66
580 601 4.641094 TGGTCCGTGAACACATTTTAAGTT 59.359 37.500 5.80 0.00 0.00 2.66
581 602 4.200874 TGGTCCGTGAACACATTTTAAGT 58.799 39.130 5.80 0.00 0.00 2.24
582 603 4.822036 TGGTCCGTGAACACATTTTAAG 57.178 40.909 5.80 0.00 0.00 1.85
583 604 4.641094 ACTTGGTCCGTGAACACATTTTAA 59.359 37.500 5.80 0.00 0.00 1.52
584 605 4.200874 ACTTGGTCCGTGAACACATTTTA 58.799 39.130 5.80 0.00 0.00 1.52
585 606 3.020984 ACTTGGTCCGTGAACACATTTT 58.979 40.909 5.80 0.00 0.00 1.82
586 607 2.650322 ACTTGGTCCGTGAACACATTT 58.350 42.857 5.80 0.00 0.00 2.32
587 608 2.341846 ACTTGGTCCGTGAACACATT 57.658 45.000 5.80 0.00 0.00 2.71
626 647 1.738099 CGTTGCCTGACTCGGAAGG 60.738 63.158 0.00 0.00 36.58 3.46
636 660 0.603707 ATGTGTGACCTCGTTGCCTG 60.604 55.000 0.00 0.00 0.00 4.85
662 690 1.067283 TGGCCGGCAACAATACATTTG 60.067 47.619 30.85 0.00 0.00 2.32
748 782 3.684788 AGTTGATAGCTTGTTGCCGTAAG 59.315 43.478 0.00 0.00 44.23 2.34
749 783 3.670625 AGTTGATAGCTTGTTGCCGTAA 58.329 40.909 0.00 0.00 44.23 3.18
849 893 3.181504 ACACGTGAAGAAAAACCCGAAAG 60.182 43.478 25.01 0.00 0.00 2.62
856 900 7.694784 TGTATTTCTGAACACGTGAAGAAAAAC 59.305 33.333 30.29 19.44 40.82 2.43
860 904 6.912203 TTGTATTTCTGAACACGTGAAGAA 57.088 33.333 25.01 22.40 0.00 2.52
861 905 7.490962 AATTGTATTTCTGAACACGTGAAGA 57.509 32.000 25.01 18.07 0.00 2.87
862 906 8.560576 AAAATTGTATTTCTGAACACGTGAAG 57.439 30.769 25.01 16.04 0.00 3.02
863 907 8.184848 TGAAAATTGTATTTCTGAACACGTGAA 58.815 29.630 25.01 4.89 39.51 3.18
864 908 7.698628 TGAAAATTGTATTTCTGAACACGTGA 58.301 30.769 25.01 0.00 39.51 4.35
965 1033 3.555547 CGACATTGTTCGCTCAATATGGA 59.444 43.478 4.99 0.00 36.44 3.41
966 1034 3.309682 ACGACATTGTTCGCTCAATATGG 59.690 43.478 0.00 0.00 43.06 2.74
975 1043 0.025001 CCATCGACGACATTGTTCGC 59.975 55.000 0.00 1.54 43.06 4.70
1340 1456 2.434884 CGCCCAGCTCGTTGATGT 60.435 61.111 0.00 0.00 0.00 3.06
1341 1457 2.434884 ACGCCCAGCTCGTTGATG 60.435 61.111 0.00 0.00 36.72 3.07
1342 1458 1.884075 TACACGCCCAGCTCGTTGAT 61.884 55.000 0.00 0.00 38.19 2.57
1366 1482 1.952133 CGTTGGCGGTCTCGTTGAA 60.952 57.895 0.00 0.00 38.89 2.69
1369 1485 2.049433 CTCGTTGGCGGTCTCGTT 60.049 61.111 0.00 0.00 38.89 3.85
1370 1486 4.719369 GCTCGTTGGCGGTCTCGT 62.719 66.667 0.00 0.00 38.89 4.18
1374 1490 1.668151 AAAGAGCTCGTTGGCGGTC 60.668 57.895 14.38 0.00 38.89 4.79
1450 1567 1.008194 CGACGGTTGACTCGTTCCA 60.008 57.895 0.00 0.00 41.22 3.53
1557 1674 2.095718 GCTTTTGAGAAACGGCGAGATT 60.096 45.455 16.62 5.35 0.00 2.40
1569 1686 1.075482 CCTGCTGGGGCTTTTGAGA 59.925 57.895 0.71 0.00 39.59 3.27
1575 1692 2.687610 CCTCATCCTGCTGGGGCTT 61.688 63.158 10.07 0.00 39.59 4.35
1576 1693 3.095163 CCTCATCCTGCTGGGGCT 61.095 66.667 10.07 0.00 39.59 5.19
1577 1694 2.900671 GAACCTCATCCTGCTGGGGC 62.901 65.000 10.07 0.00 40.78 5.80
1579 1696 1.153289 CGAACCTCATCCTGCTGGG 60.153 63.158 10.07 0.00 0.00 4.45
1580 1697 0.179089 CTCGAACCTCATCCTGCTGG 60.179 60.000 2.58 2.58 0.00 4.85
1583 1700 2.386661 TTTCTCGAACCTCATCCTGC 57.613 50.000 0.00 0.00 0.00 4.85
1674 1794 3.948719 AGGTCGGCGGCCTTGAAA 61.949 61.111 30.27 0.00 31.04 2.69
1765 1885 4.261825 GCAGAACGAGGAGCTACTATCATT 60.262 45.833 0.00 0.00 0.00 2.57
1768 1888 2.030628 GGCAGAACGAGGAGCTACTATC 60.031 54.545 0.00 0.00 0.00 2.08
1769 1889 1.957877 GGCAGAACGAGGAGCTACTAT 59.042 52.381 0.00 0.00 0.00 2.12
1770 1890 1.390565 GGCAGAACGAGGAGCTACTA 58.609 55.000 0.00 0.00 0.00 1.82
1775 1895 2.125350 CAGGGCAGAACGAGGAGC 60.125 66.667 0.00 0.00 0.00 4.70
1822 1942 1.442769 CACTTACTGCGGTTGCTCAT 58.557 50.000 1.99 0.00 43.34 2.90
1836 1956 0.323302 TGATGGACTTGGCGCACTTA 59.677 50.000 10.83 0.00 0.00 2.24
1853 1973 2.969950 CAGTAATATCCCTCCCCGTTGA 59.030 50.000 0.00 0.00 0.00 3.18
1914 2034 0.035739 ACTTACCCGTGCATCCGTTT 59.964 50.000 0.00 0.00 0.00 3.60
1983 2103 1.113788 ATTTTCACCATCATGGCCCG 58.886 50.000 2.52 0.00 42.67 6.13
2021 2157 9.687210 ACTTTTTACGAGGGAAAAATAAACATC 57.313 29.630 0.00 0.00 35.73 3.06
2033 2176 5.900865 AAACAAACACTTTTTACGAGGGA 57.099 34.783 0.00 0.00 0.00 4.20
2034 2177 6.954616 AAAAACAAACACTTTTTACGAGGG 57.045 33.333 0.00 0.00 30.66 4.30
2097 2240 0.898326 GGCCACCTGAAATTTCCCGT 60.898 55.000 15.48 8.38 0.00 5.28
2157 6632 8.094548 AGAGTGACTTTTTAAGCCAAAAACTTT 58.905 29.630 3.16 0.00 40.39 2.66
2193 7314 3.028850 CAAGTATGGAGGGTCGGTAAGA 58.971 50.000 0.00 0.00 0.00 2.10
2196 7317 2.537633 ACAAGTATGGAGGGTCGGTA 57.462 50.000 0.00 0.00 0.00 4.02
2200 7321 8.974060 TTCAAATATTACAAGTATGGAGGGTC 57.026 34.615 0.00 0.00 0.00 4.46
2212 7335 6.729391 TGTAGCACGCTTCAAATATTACAA 57.271 33.333 0.00 0.00 0.00 2.41
2224 7347 3.175929 GTGTTGTTTTTGTAGCACGCTT 58.824 40.909 0.00 0.00 0.00 4.68
2261 7384 6.041523 GCTCTATATTCTCTTCACCAACCTCT 59.958 42.308 0.00 0.00 0.00 3.69
2296 7419 7.669304 TCTTTGAGATGTCCAAAACCAATATGA 59.331 33.333 0.00 0.00 33.68 2.15
2325 7449 3.502123 TCTCTCCACCAACCGATTTTT 57.498 42.857 0.00 0.00 0.00 1.94
2326 7450 3.502123 TTCTCTCCACCAACCGATTTT 57.498 42.857 0.00 0.00 0.00 1.82
2327 7451 3.721087 ATTCTCTCCACCAACCGATTT 57.279 42.857 0.00 0.00 0.00 2.17
2328 7452 6.688073 ATATATTCTCTCCACCAACCGATT 57.312 37.500 0.00 0.00 0.00 3.34
2331 7455 6.994221 AGTTATATATTCTCTCCACCAACCG 58.006 40.000 0.00 0.00 0.00 4.44
2353 7477 8.986991 GGGTATCAATATATGGATGAAGAGAGT 58.013 37.037 12.25 0.00 0.00 3.24
2375 7499 2.101917 GCTATGCTTAGTTCACCGGGTA 59.898 50.000 6.32 0.00 0.00 3.69
2411 7535 3.848975 ACTGATTCCATCCCAAAGAGTCT 59.151 43.478 0.00 0.00 0.00 3.24
2412 7536 4.195416 GACTGATTCCATCCCAAAGAGTC 58.805 47.826 0.00 0.00 0.00 3.36
2413 7537 3.054065 GGACTGATTCCATCCCAAAGAGT 60.054 47.826 0.00 0.00 45.10 3.24
2414 7538 3.549794 GGACTGATTCCATCCCAAAGAG 58.450 50.000 0.00 0.00 45.10 2.85
2433 7557 5.104360 CCTCTAGAATTTGAATCTGGGTGGA 60.104 44.000 0.00 0.00 0.00 4.02
2440 7566 5.344743 TGCGACCTCTAGAATTTGAATCT 57.655 39.130 0.00 0.00 0.00 2.40
2441 7567 5.503194 GCTTGCGACCTCTAGAATTTGAATC 60.503 44.000 0.00 0.00 0.00 2.52
2442 7568 4.333926 GCTTGCGACCTCTAGAATTTGAAT 59.666 41.667 0.00 0.00 0.00 2.57
2448 7574 2.831333 CATGCTTGCGACCTCTAGAAT 58.169 47.619 0.00 0.00 0.00 2.40
2450 7576 0.179100 GCATGCTTGCGACCTCTAGA 60.179 55.000 11.37 0.00 39.49 2.43
2465 7591 7.548196 AAATCCAGAAAAATATGCAAGCATG 57.452 32.000 17.26 0.00 37.82 4.06
2466 7592 9.841295 AATAAATCCAGAAAAATATGCAAGCAT 57.159 25.926 12.66 12.66 40.19 3.79
2493 7619 1.927174 CAATAGCGTCGAAGAACCTGG 59.073 52.381 1.37 0.00 39.69 4.45
2515 7643 3.498481 GGGAGGCATGCCATACTATTGAA 60.498 47.826 37.18 0.00 36.78 2.69
2519 7647 1.746157 TGGGAGGCATGCCATACTAT 58.254 50.000 37.18 16.94 42.90 2.12
2521 7649 4.088164 TGGGAGGCATGCCATACT 57.912 55.556 37.18 18.19 42.90 2.12
2535 7663 3.643320 TCTGCATAGTCCTCATAGTTGGG 59.357 47.826 0.00 0.00 0.00 4.12
2536 7664 4.586421 TCTCTGCATAGTCCTCATAGTTGG 59.414 45.833 0.00 0.00 0.00 3.77
2548 7676 5.426504 CTGAAATGTTCCTCTCTGCATAGT 58.573 41.667 0.00 0.00 0.00 2.12
2554 7682 3.008375 TGGTCCTGAAATGTTCCTCTCTG 59.992 47.826 0.00 0.00 0.00 3.35
2617 7745 2.152699 GTCGACGGTGATGAGTGCG 61.153 63.158 0.00 0.00 0.00 5.34
2625 7753 2.746412 TAGGAACGGGTCGACGGTGA 62.746 60.000 9.92 0.00 38.39 4.02
2631 7759 0.331278 TAGGGTTAGGAACGGGTCGA 59.669 55.000 0.00 0.00 0.00 4.20
2632 7760 0.457443 GTAGGGTTAGGAACGGGTCG 59.543 60.000 0.00 0.00 0.00 4.79
2644 7772 0.404040 CCATGGTGTGTGGTAGGGTT 59.596 55.000 2.57 0.00 31.96 4.11
2714 7843 1.734477 CCACGTCGAGCTCTTGTGG 60.734 63.158 24.98 24.98 43.55 4.17
2728 7857 4.767255 GGCAGAGACAGGCCCACG 62.767 72.222 0.00 0.00 44.53 4.94
2746 7875 1.522569 GGAACGGATGAGGACTGGG 59.477 63.158 0.00 0.00 0.00 4.45
2756 7885 2.231380 AGCAGGTTGGGGAACGGAT 61.231 57.895 0.00 0.00 0.00 4.18
2757 7886 2.852075 AGCAGGTTGGGGAACGGA 60.852 61.111 0.00 0.00 0.00 4.69
2758 7887 2.672996 CAGCAGGTTGGGGAACGG 60.673 66.667 0.00 0.00 0.00 4.44
2767 7896 2.530151 TGGCCTCCTCAGCAGGTT 60.530 61.111 3.32 0.00 41.28 3.50
2770 7899 1.958902 GACTCTGGCCTCCTCAGCAG 61.959 65.000 3.32 0.00 32.63 4.24
2792 7921 0.105593 CGATGCTGGATGGCTAGTGT 59.894 55.000 0.00 0.00 0.00 3.55
2796 7925 0.109153 ATTGCGATGCTGGATGGCTA 59.891 50.000 16.15 9.84 36.75 3.93
2805 7934 1.952296 GAAGGATGGAATTGCGATGCT 59.048 47.619 0.00 0.00 34.98 3.79
2806 7935 1.677576 TGAAGGATGGAATTGCGATGC 59.322 47.619 0.00 0.00 0.00 3.91
2847 7977 4.849329 GGTGGGCGAGACGTAGCG 62.849 72.222 5.28 5.28 0.00 4.26
2878 8008 1.143684 AGTCTGCAGTTTGTCACCCAT 59.856 47.619 14.67 0.00 0.00 4.00
2889 8019 1.608283 GGCTAAAACGGAGTCTGCAGT 60.608 52.381 14.67 0.00 45.00 4.40
2892 8022 0.796927 GTGGCTAAAACGGAGTCTGC 59.203 55.000 0.00 0.00 45.00 4.26
2897 8027 2.671070 GCAAATGGTGGCTAAAACGGAG 60.671 50.000 0.00 0.00 0.00 4.63
2909 8039 1.601419 CTCTGGCTGGGCAAATGGTG 61.601 60.000 0.00 0.00 0.00 4.17
2913 8043 1.980772 GTGCTCTGGCTGGGCAAAT 60.981 57.895 21.05 0.00 37.73 2.32
2918 8048 4.421515 CAGGGTGCTCTGGCTGGG 62.422 72.222 0.00 0.00 39.59 4.45
2919 8049 4.421515 CCAGGGTGCTCTGGCTGG 62.422 72.222 5.03 0.00 46.47 4.85
2979 8109 4.862823 AGCGGGGGTAGGGAGAGC 62.863 72.222 0.00 0.00 0.00 4.09
2988 8118 1.520666 CGAATGTAAGAGCGGGGGT 59.479 57.895 0.00 0.00 0.00 4.95
3041 8171 6.266168 TGAAAATATACCTTGGTGCAAGTG 57.734 37.500 2.03 0.00 39.58 3.16
3110 8240 6.936335 ACAAATCGTGAATCATATGCCATCTA 59.064 34.615 0.00 0.00 0.00 1.98
3129 8259 3.005472 CCATGATGGCATCCAGACAAATC 59.995 47.826 23.92 0.00 39.98 2.17
3180 8312 3.956199 CAACATCAACATAGCCCAAGGAT 59.044 43.478 0.00 0.00 0.00 3.24
3181 8313 3.010027 TCAACATCAACATAGCCCAAGGA 59.990 43.478 0.00 0.00 0.00 3.36
3182 8314 3.355378 TCAACATCAACATAGCCCAAGG 58.645 45.455 0.00 0.00 0.00 3.61
3183 8315 5.587388 AATCAACATCAACATAGCCCAAG 57.413 39.130 0.00 0.00 0.00 3.61
3188 8320 7.376866 CACCGAATAAATCAACATCAACATAGC 59.623 37.037 0.00 0.00 0.00 2.97
3190 8322 8.499403 TCACCGAATAAATCAACATCAACATA 57.501 30.769 0.00 0.00 0.00 2.29
3193 8325 6.961554 GTCTCACCGAATAAATCAACATCAAC 59.038 38.462 0.00 0.00 0.00 3.18
3212 8344 5.758296 TGAGTAACCATCAACAAAGTCTCAC 59.242 40.000 0.00 0.00 0.00 3.51
3218 8362 5.047802 AGCCATTGAGTAACCATCAACAAAG 60.048 40.000 0.00 0.00 39.36 2.77
3236 8380 3.969312 CCTCCCATTTTCCATTAGCCATT 59.031 43.478 0.00 0.00 0.00 3.16
3241 8385 3.638627 GCCTTCCTCCCATTTTCCATTAG 59.361 47.826 0.00 0.00 0.00 1.73
3243 8387 2.470990 GCCTTCCTCCCATTTTCCATT 58.529 47.619 0.00 0.00 0.00 3.16
3251 8395 0.625849 ACAATTCGCCTTCCTCCCAT 59.374 50.000 0.00 0.00 0.00 4.00
3266 8410 2.365617 CCGAGCTATGACCCTACACAAT 59.634 50.000 0.00 0.00 0.00 2.71
3272 8416 0.182061 ACGACCGAGCTATGACCCTA 59.818 55.000 0.00 0.00 0.00 3.53
3303 8447 1.251527 GGACTGCTTCTCCACTCCGA 61.252 60.000 0.00 0.00 0.00 4.55
3305 8449 0.908198 ATGGACTGCTTCTCCACTCC 59.092 55.000 0.32 0.00 40.73 3.85
3318 8462 2.336891 AGGATGAGCATAGCATGGACT 58.663 47.619 0.00 0.00 0.00 3.85
3320 8464 4.406972 GGTATAGGATGAGCATAGCATGGA 59.593 45.833 0.00 0.00 0.00 3.41
3326 8470 6.096141 CACTACAGGGTATAGGATGAGCATAG 59.904 46.154 0.00 0.00 0.00 2.23
3342 8486 1.613630 AGGCTGGGTCACTACAGGG 60.614 63.158 0.00 0.00 35.30 4.45
3356 8500 0.975040 AGGCTTGATCGTCTGAGGCT 60.975 55.000 0.00 0.00 39.82 4.58
3357 8501 0.529555 GAGGCTTGATCGTCTGAGGC 60.530 60.000 0.00 0.00 35.17 4.70
3439 8586 6.564686 CGTTATCCATACATGTGATTGCACTC 60.565 42.308 9.11 0.00 45.36 3.51
3469 8616 8.961634 GCTGTGACTTATGAGGTATATATCAGA 58.038 37.037 0.00 0.00 0.00 3.27
3536 8683 0.316204 CGGTCTACACTCAACCCGTT 59.684 55.000 0.00 0.00 0.00 4.44
3539 8686 2.353109 GGTTACGGTCTACACTCAACCC 60.353 54.545 0.00 0.00 0.00 4.11
3639 8786 5.070446 TCTCTTATTGTGATCTTGCCGGTAT 59.930 40.000 1.90 0.00 0.00 2.73
3710 8857 7.672351 TTTATGCAAAACAAACTTAGACACG 57.328 32.000 0.00 0.00 0.00 4.49
3751 8899 6.769512 TCTGGTTATATCCTTTGATGTAGGC 58.230 40.000 1.59 0.00 32.59 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.