Multiple sequence alignment - TraesCS5B01G047200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G047200 chr5B 100.000 6776 0 0 831 7606 53246460 53253235 0.000000e+00 12514.0
1 TraesCS5B01G047200 chr5B 100.000 563 0 0 1 563 53245630 53246192 0.000000e+00 1040.0
2 TraesCS5B01G047200 chr5B 76.543 729 118 42 2999 3692 556179085 556179795 4.370000e-92 350.0
3 TraesCS5B01G047200 chr5B 92.632 190 13 1 1118 1307 556177590 556177778 9.730000e-69 272.0
4 TraesCS5B01G047200 chr5B 90.000 150 9 3 6451 6600 556182491 556182634 1.010000e-43 189.0
5 TraesCS5B01G047200 chr5B 89.726 146 14 1 2494 2639 556178603 556178747 1.300000e-42 185.0
6 TraesCS5B01G047200 chr5D 91.230 6579 315 105 831 7302 50483076 50489499 0.000000e+00 8711.0
7 TraesCS5B01G047200 chr5D 76.599 735 122 39 2987 3692 454415996 454416709 7.260000e-95 359.0
8 TraesCS5B01G047200 chr5D 88.559 236 11 7 1 229 50482525 50482751 9.730000e-69 272.0
9 TraesCS5B01G047200 chr5D 92.632 190 13 1 1118 1307 454414394 454414582 9.730000e-69 272.0
10 TraesCS5B01G047200 chr5D 90.000 150 9 3 6451 6600 454419426 454419569 1.010000e-43 189.0
11 TraesCS5B01G047200 chr5D 90.511 137 13 0 2503 2639 454415388 454415524 1.690000e-41 182.0
12 TraesCS5B01G047200 chr5A 91.460 5726 294 84 1532 7135 39845891 39851543 0.000000e+00 7685.0
13 TraesCS5B01G047200 chr5A 94.044 638 21 7 831 1452 39845197 39845833 0.000000e+00 952.0
14 TraesCS5B01G047200 chr5A 76.144 721 124 34 2999 3692 573647232 573647931 1.220000e-87 335.0
15 TraesCS5B01G047200 chr5A 92.105 190 14 1 1118 1307 573645780 573645968 4.520000e-67 267.0
16 TraesCS5B01G047200 chr5A 90.196 153 9 3 6448 6600 573650632 573650778 2.170000e-45 195.0
17 TraesCS5B01G047200 chr5A 90.511 137 13 0 2503 2639 573646760 573646896 1.690000e-41 182.0
18 TraesCS5B01G047200 chr5A 84.821 112 8 3 104 211 39844695 39844801 3.750000e-18 104.0
19 TraesCS5B01G047200 chr2B 87.818 747 54 16 2414 3144 145534876 145535601 0.000000e+00 841.0
20 TraesCS5B01G047200 chr2B 81.818 154 21 5 6210 6361 76091777 76091629 1.040000e-23 122.0
21 TraesCS5B01G047200 chr1D 86.034 179 25 0 1134 1312 217636261 217636439 7.790000e-45 193.0
22 TraesCS5B01G047200 chr1A 85.556 180 24 2 1134 1312 279733343 279733521 3.620000e-43 187.0
23 TraesCS5B01G047200 chr3D 84.656 189 26 2 1114 1302 103645476 103645661 1.300000e-42 185.0
24 TraesCS5B01G047200 chr3D 100.000 32 0 0 3186 3217 103646364 103646395 8.240000e-05 60.2
25 TraesCS5B01G047200 chr3B 84.656 189 26 2 1114 1302 154220626 154220811 1.300000e-42 185.0
26 TraesCS5B01G047200 chr3B 100.000 32 0 0 3186 3217 154221483 154221514 8.240000e-05 60.2
27 TraesCS5B01G047200 chr1B 81.373 102 16 3 5342 5441 311424076 311424176 6.330000e-11 80.5
28 TraesCS5B01G047200 chr3A 92.683 41 3 0 3186 3226 552614244 552614204 8.240000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G047200 chr5B 53245630 53253235 7605 False 6777.000000 12514 100.000000 1 7606 2 chr5B.!!$F1 7605
1 TraesCS5B01G047200 chr5B 556177590 556182634 5044 False 249.000000 350 87.225250 1118 6600 4 chr5B.!!$F2 5482
2 TraesCS5B01G047200 chr5D 50482525 50489499 6974 False 4491.500000 8711 89.894500 1 7302 2 chr5D.!!$F1 7301
3 TraesCS5B01G047200 chr5D 454414394 454419569 5175 False 250.500000 359 87.435500 1118 6600 4 chr5D.!!$F2 5482
4 TraesCS5B01G047200 chr5A 39844695 39851543 6848 False 2913.666667 7685 90.108333 104 7135 3 chr5A.!!$F1 7031
5 TraesCS5B01G047200 chr5A 573645780 573650778 4998 False 244.750000 335 87.239000 1118 6600 4 chr5A.!!$F2 5482
6 TraesCS5B01G047200 chr2B 145534876 145535601 725 False 841.000000 841 87.818000 2414 3144 1 chr2B.!!$F1 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 284 0.248458 CGTTGCAACACAAGGGACAC 60.248 55.000 28.01 0.00 39.50 3.67 F
1413 1543 0.108585 AGCTTCCTTTGCGTTCTGGA 59.891 50.000 0.00 0.00 35.28 3.86 F
1470 1613 0.237498 GTGGTTTTCTCGCGGAAAGG 59.763 55.000 17.89 1.52 43.68 3.11 F
1471 1614 0.887387 TGGTTTTCTCGCGGAAAGGG 60.887 55.000 17.89 0.03 43.68 3.95 F
3034 3527 0.681733 GTGAGGAGACCTTGACAGCA 59.318 55.000 0.00 0.00 31.76 4.41 F
3592 4105 0.885879 AGACTTATGCACCGACGACA 59.114 50.000 0.00 0.00 0.00 4.35 F
5177 5769 1.467342 GGACATGGTTTTAGCCACGAC 59.533 52.381 0.00 0.00 41.94 4.34 F
5594 6191 0.394216 CCGCCCTTGATGTTGGATCA 60.394 55.000 0.00 0.00 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1613 0.692476 AAATTTCCCCAAGCTTGCCC 59.308 50.000 21.43 0.00 0.00 5.36 R
2919 3407 0.321919 TGAGACTGGGCATTGCACTC 60.322 55.000 12.93 11.08 30.56 3.51 R
2956 3444 2.336554 CAAACTTGCATCGACCAAGG 57.663 50.000 23.63 11.48 42.98 3.61 R
3130 3623 6.376018 ACAAACTTGGTAGAAAAACAGCACTA 59.624 34.615 0.00 0.00 0.00 2.74 R
4578 5166 0.244721 TCAGCACCATCACTCGTCAG 59.755 55.000 0.00 0.00 0.00 3.51 R
5253 5847 0.179045 ACACTCAGGACACAGCAACC 60.179 55.000 0.00 0.00 0.00 3.77 R
6169 6828 0.175760 GTGAACATCGGAGCAGGCTA 59.824 55.000 0.00 0.00 0.00 3.93 R
7309 7977 0.106268 TTCTTCCAGGCCAGCACAAA 60.106 50.000 5.01 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 138 1.086696 TGCGATGCTTAAAGCTGTCC 58.913 50.000 0.00 0.00 42.97 4.02
132 139 0.378610 GCGATGCTTAAAGCTGTCCC 59.621 55.000 0.00 0.00 42.97 4.46
137 144 1.271379 TGCTTAAAGCTGTCCCCTCAC 60.271 52.381 0.00 0.00 42.97 3.51
138 145 1.726853 CTTAAAGCTGTCCCCTCACG 58.273 55.000 0.00 0.00 0.00 4.35
139 146 1.002087 CTTAAAGCTGTCCCCTCACGT 59.998 52.381 0.00 0.00 0.00 4.49
140 147 0.606604 TAAAGCTGTCCCCTCACGTC 59.393 55.000 0.00 0.00 0.00 4.34
141 148 1.122019 AAAGCTGTCCCCTCACGTCT 61.122 55.000 0.00 0.00 0.00 4.18
142 149 1.536943 AAGCTGTCCCCTCACGTCTC 61.537 60.000 0.00 0.00 0.00 3.36
146 153 1.674980 GTCCCCTCACGTCTCGTCT 60.675 63.158 0.00 0.00 38.32 4.18
168 175 0.327924 TCCACTGTAACCATGCCCAG 59.672 55.000 0.00 0.00 0.00 4.45
169 176 0.680921 CCACTGTAACCATGCCCAGG 60.681 60.000 0.00 0.00 0.00 4.45
174 181 2.995077 TAACCATGCCCAGGCCCAG 61.995 63.158 6.14 0.00 41.09 4.45
215 222 8.816640 TCTGCTTTGAACCTCAATTATTTTTC 57.183 30.769 0.00 0.00 36.11 2.29
217 224 8.954950 TGCTTTGAACCTCAATTATTTTTCAA 57.045 26.923 0.00 0.00 36.11 2.69
237 244 5.698832 TCAATTTTTAGACACGATTGCCAG 58.301 37.500 0.00 0.00 0.00 4.85
238 245 5.240623 TCAATTTTTAGACACGATTGCCAGT 59.759 36.000 0.00 0.00 0.00 4.00
239 246 6.428465 TCAATTTTTAGACACGATTGCCAGTA 59.572 34.615 0.00 0.00 0.00 2.74
240 247 7.120579 TCAATTTTTAGACACGATTGCCAGTAT 59.879 33.333 0.00 0.00 0.00 2.12
241 248 5.794687 TTTTAGACACGATTGCCAGTATG 57.205 39.130 0.00 0.00 0.00 2.39
242 249 4.465632 TTAGACACGATTGCCAGTATGT 57.534 40.909 0.00 0.00 0.00 2.29
243 250 2.893637 AGACACGATTGCCAGTATGTC 58.106 47.619 0.00 0.00 37.35 3.06
244 251 2.497675 AGACACGATTGCCAGTATGTCT 59.502 45.455 4.66 4.66 41.42 3.41
245 252 2.604914 GACACGATTGCCAGTATGTCTG 59.395 50.000 0.00 0.00 43.27 3.51
246 253 2.028112 ACACGATTGCCAGTATGTCTGT 60.028 45.455 0.00 0.00 42.19 3.41
247 254 3.194755 ACACGATTGCCAGTATGTCTGTA 59.805 43.478 0.00 0.00 42.19 2.74
259 266 0.320334 TGTCTGTATGTGCACACCCG 60.320 55.000 24.37 12.24 0.00 5.28
277 284 0.248458 CGTTGCAACACAAGGGACAC 60.248 55.000 28.01 0.00 39.50 3.67
293 302 3.621715 GGGACACGATTAGTTCCAACATC 59.378 47.826 0.00 0.00 34.11 3.06
295 304 4.330074 GGACACGATTAGTTCCAACATCAG 59.670 45.833 0.00 0.00 33.28 2.90
311 320 5.902613 ACATCAGCAAGCAAAATTAGCTA 57.097 34.783 5.82 0.00 42.53 3.32
327 337 9.654919 AAAATTAGCTATAGCCCCTTTGATTAA 57.345 29.630 21.17 9.94 43.38 1.40
360 370 6.808212 AGTAATTTGTAAACATGCAGTGATGC 59.192 34.615 0.00 0.00 0.00 3.91
368 378 2.285977 CATGCAGTGATGCTTGAGCTA 58.714 47.619 9.74 0.00 40.88 3.32
379 389 7.708752 AGTGATGCTTGAGCTAGAAATTACTAC 59.291 37.037 4.44 0.00 42.66 2.73
382 395 5.805486 TGCTTGAGCTAGAAATTACTACACG 59.195 40.000 4.44 0.00 42.66 4.49
403 417 4.024387 ACGGTACAGTTTGTAAACATGCAG 60.024 41.667 9.85 4.91 41.30 4.41
408 422 5.581605 ACAGTTTGTAAACATGCAGTGAAG 58.418 37.500 9.85 0.00 41.30 3.02
419 433 1.672363 TGCAGTGAAGTGTTCTTGCAG 59.328 47.619 12.36 0.00 42.01 4.41
435 449 9.671279 TGTTCTTGCAGAAATTGATCTAAGATA 57.329 29.630 0.00 0.00 35.75 1.98
441 455 8.834465 TGCAGAAATTGATCTAAGATAAGAAGC 58.166 33.333 0.00 0.00 0.00 3.86
453 467 8.865090 TCTAAGATAAGAAGCATCCTAGAAAGG 58.135 37.037 0.00 0.00 45.21 3.11
499 555 6.207417 TCATCTCAGGAAAGGAAATGTTTCAC 59.793 38.462 7.69 0.00 38.92 3.18
508 564 6.814506 AAGGAAATGTTTCACTCTCATCTG 57.185 37.500 7.69 0.00 38.92 2.90
514 570 9.766277 GAAATGTTTCACTCTCATCTGAAATAC 57.234 33.333 0.79 0.00 38.37 1.89
515 571 9.512588 AAATGTTTCACTCTCATCTGAAATACT 57.487 29.630 0.00 0.00 38.37 2.12
517 573 8.988064 TGTTTCACTCTCATCTGAAATACTAC 57.012 34.615 0.00 0.00 38.37 2.73
535 591 5.762825 ACTACTACTCGACACAAAAGTGA 57.237 39.130 2.22 0.00 0.00 3.41
1043 1140 1.690985 CTTCCCACCCTCCTCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
1068 1165 1.739338 ATCCTCTTCGGGTAGCAGCG 61.739 60.000 0.00 0.00 0.00 5.18
1240 1349 2.203112 GCCGCCAGCAGATCATCA 60.203 61.111 0.00 0.00 42.97 3.07
1406 1536 0.386478 GCAAGTCAGCTTCCTTTGCG 60.386 55.000 6.32 0.00 31.49 4.85
1407 1537 0.947244 CAAGTCAGCTTCCTTTGCGT 59.053 50.000 0.00 0.00 31.49 5.24
1408 1538 1.334869 CAAGTCAGCTTCCTTTGCGTT 59.665 47.619 0.00 0.00 31.49 4.84
1409 1539 1.230324 AGTCAGCTTCCTTTGCGTTC 58.770 50.000 0.00 0.00 35.28 3.95
1410 1540 1.202698 AGTCAGCTTCCTTTGCGTTCT 60.203 47.619 0.00 0.00 35.28 3.01
1411 1541 1.069636 GTCAGCTTCCTTTGCGTTCTG 60.070 52.381 0.00 0.00 35.28 3.02
1412 1542 0.239347 CAGCTTCCTTTGCGTTCTGG 59.761 55.000 0.00 0.00 35.28 3.86
1413 1543 0.108585 AGCTTCCTTTGCGTTCTGGA 59.891 50.000 0.00 0.00 35.28 3.86
1414 1544 0.951558 GCTTCCTTTGCGTTCTGGAA 59.048 50.000 0.00 0.00 37.11 3.53
1416 1546 2.631160 TTCCTTTGCGTTCTGGAAGA 57.369 45.000 0.00 0.00 44.68 2.87
1461 1604 7.214467 TGGATTTCAGTAATGTGGTTTTCTC 57.786 36.000 0.00 0.00 0.00 2.87
1469 1612 0.941542 TGTGGTTTTCTCGCGGAAAG 59.058 50.000 17.89 5.11 43.68 2.62
1470 1613 0.237498 GTGGTTTTCTCGCGGAAAGG 59.763 55.000 17.89 1.52 43.68 3.11
1471 1614 0.887387 TGGTTTTCTCGCGGAAAGGG 60.887 55.000 17.89 0.03 43.68 3.95
1476 1619 3.127533 CTCGCGGAAAGGGGCAAG 61.128 66.667 6.13 0.00 0.00 4.01
1499 1710 1.344496 TGGGGAAATTTTGGGTGTGGT 60.344 47.619 0.00 0.00 0.00 4.16
1502 1713 3.502356 GGGAAATTTTGGGTGTGGTAGA 58.498 45.455 0.00 0.00 0.00 2.59
1522 1733 6.822170 GGTAGATTCTTTCGGTGGAGTTTATT 59.178 38.462 0.00 0.00 0.00 1.40
1588 1799 5.237561 CCTCCGTTTTTGGGGTTAATTTTTG 59.762 40.000 0.00 0.00 0.00 2.44
1593 1804 5.819825 TTTTGGGGTTAATTTTTGTGTGC 57.180 34.783 0.00 0.00 0.00 4.57
1594 1805 4.762289 TTGGGGTTAATTTTTGTGTGCT 57.238 36.364 0.00 0.00 0.00 4.40
1595 1806 5.871396 TTGGGGTTAATTTTTGTGTGCTA 57.129 34.783 0.00 0.00 0.00 3.49
1597 1808 4.896482 TGGGGTTAATTTTTGTGTGCTAGT 59.104 37.500 0.00 0.00 0.00 2.57
1599 1810 6.550108 TGGGGTTAATTTTTGTGTGCTAGTTA 59.450 34.615 0.00 0.00 0.00 2.24
1600 1811 7.069578 TGGGGTTAATTTTTGTGTGCTAGTTAA 59.930 33.333 0.00 0.00 0.00 2.01
1601 1812 7.597369 GGGGTTAATTTTTGTGTGCTAGTTAAG 59.403 37.037 0.00 0.00 0.00 1.85
1616 1833 6.875195 TGCTAGTTAAGTGTAAACGCCTAAAT 59.125 34.615 0.00 0.00 32.00 1.40
1785 2003 4.261197 GGTCAAACAACCTCACATGTCTTC 60.261 45.833 0.00 0.00 36.32 2.87
1824 2042 1.168714 GATTTGGGCTCACTGTCACC 58.831 55.000 0.00 0.00 0.00 4.02
1873 2091 1.691434 GCAATGGGTTTCCTCCAACAA 59.309 47.619 0.00 0.00 37.87 2.83
1884 2102 4.150897 TCCTCCAACAAATATTCCCTCG 57.849 45.455 0.00 0.00 0.00 4.63
1912 2130 3.565307 TCTTGTTTCCTGTGCATCCTTT 58.435 40.909 0.00 0.00 0.00 3.11
2024 2244 5.010012 TCCTTTCCTTTTGAATCTTCAGTGC 59.990 40.000 0.00 0.00 38.61 4.40
2047 2267 5.941733 CATGTGTACATGTAGCACAACATT 58.058 37.500 28.66 17.95 46.40 2.71
2048 2268 7.071014 CATGTGTACATGTAGCACAACATTA 57.929 36.000 28.66 15.16 46.40 1.90
2430 2654 3.719268 ATCATTGTGTTAGAGGCCACA 57.281 42.857 5.01 0.00 39.68 4.17
2454 2678 5.645497 AGCTATCCTTTCAGCACTAGTTTTG 59.355 40.000 0.00 0.00 40.36 2.44
2460 2684 2.494059 TCAGCACTAGTTTTGTCCAGC 58.506 47.619 0.00 0.00 0.00 4.85
2565 2881 2.027625 GGTGAACCGGAAGCTCACG 61.028 63.158 9.46 3.26 40.96 4.35
2717 3186 8.353423 TCTAGATGCTATGTGTGCTTGATATA 57.647 34.615 0.00 0.00 0.00 0.86
2774 3243 3.665173 GCTACTGCCTTTCTCATTTCG 57.335 47.619 0.00 0.00 0.00 3.46
2778 3247 2.027192 ACTGCCTTTCTCATTTCGCCTA 60.027 45.455 0.00 0.00 0.00 3.93
2779 3248 2.352960 CTGCCTTTCTCATTTCGCCTAC 59.647 50.000 0.00 0.00 0.00 3.18
2780 3249 1.671328 GCCTTTCTCATTTCGCCTACC 59.329 52.381 0.00 0.00 0.00 3.18
2781 3250 2.289565 CCTTTCTCATTTCGCCTACCC 58.710 52.381 0.00 0.00 0.00 3.69
2782 3251 2.355716 CCTTTCTCATTTCGCCTACCCA 60.356 50.000 0.00 0.00 0.00 4.51
2783 3252 3.545703 CTTTCTCATTTCGCCTACCCAT 58.454 45.455 0.00 0.00 0.00 4.00
2784 3253 2.620251 TCTCATTTCGCCTACCCATG 57.380 50.000 0.00 0.00 0.00 3.66
2785 3254 1.837439 TCTCATTTCGCCTACCCATGT 59.163 47.619 0.00 0.00 0.00 3.21
2786 3255 2.238646 TCTCATTTCGCCTACCCATGTT 59.761 45.455 0.00 0.00 0.00 2.71
2787 3256 3.452990 TCTCATTTCGCCTACCCATGTTA 59.547 43.478 0.00 0.00 0.00 2.41
2803 3279 6.650390 ACCCATGTTAACATTTTCTTGCAATC 59.350 34.615 18.50 0.00 33.61 2.67
2953 3441 6.261158 GCCCAGTCTCATTTCTTAGGTAAATC 59.739 42.308 0.00 0.00 0.00 2.17
2956 3444 6.018669 CAGTCTCATTTCTTAGGTAAATCGGC 60.019 42.308 0.00 0.00 0.00 5.54
2957 3445 5.236695 GTCTCATTTCTTAGGTAAATCGGCC 59.763 44.000 0.00 0.00 0.00 6.13
3034 3527 0.681733 GTGAGGAGACCTTGACAGCA 59.318 55.000 0.00 0.00 31.76 4.41
3130 3623 7.906327 TGTATACATATGATGGTAGTGCACAT 58.094 34.615 21.04 2.97 33.60 3.21
3533 4034 2.480419 GTGCTTGTTGCTGTACTAGTGG 59.520 50.000 5.39 0.00 43.37 4.00
3541 4042 4.720649 TGCTGTACTAGTGGATCTGTTC 57.279 45.455 5.39 0.00 0.00 3.18
3592 4105 0.885879 AGACTTATGCACCGACGACA 59.114 50.000 0.00 0.00 0.00 4.35
3634 4147 1.533469 GGACACTCCGCTACACCTGT 61.533 60.000 0.00 0.00 0.00 4.00
3845 4359 5.943416 TGTATGTAATGGTGCTTTTACTGCT 59.057 36.000 0.00 0.00 31.16 4.24
3846 4360 4.764679 TGTAATGGTGCTTTTACTGCTG 57.235 40.909 0.00 0.00 31.16 4.41
4078 4592 9.689976 CATGTTGATTTGGATGTAAGTAACAAA 57.310 29.630 0.00 0.00 42.70 2.83
4105 4643 9.851686 AATGGCTTTCATATCACTTGAATACTA 57.148 29.630 0.00 0.00 34.44 1.82
4226 4771 6.040504 ACAGAAGATGACTATTGCGGTATGTA 59.959 38.462 0.00 0.00 0.00 2.29
4234 4798 5.800296 ACTATTGCGGTATGTATGCCATTA 58.200 37.500 0.04 0.00 34.86 1.90
4284 4848 5.895636 TGTTATTTTACAGATGCACCAGG 57.104 39.130 0.00 0.00 0.00 4.45
4287 4851 3.737559 TTTTACAGATGCACCAGGGAT 57.262 42.857 0.00 0.00 0.00 3.85
4302 4866 3.331889 CCAGGGATATATCAGGCAAAGGT 59.668 47.826 14.60 0.00 0.00 3.50
4303 4867 4.202609 CCAGGGATATATCAGGCAAAGGTT 60.203 45.833 14.60 0.00 0.00 3.50
4309 4873 6.073003 GGATATATCAGGCAAAGGTTTTCTCG 60.073 42.308 14.60 0.00 0.00 4.04
4395 4960 1.692411 GTGAAATCCCCTATGGTGCC 58.308 55.000 0.00 0.00 34.77 5.01
4578 5166 2.165030 CCAGATGATGGTTGGTCTTTGC 59.835 50.000 0.00 0.00 44.91 3.68
4788 5376 3.466836 AGACAATCTTCGTGCTTGTTCA 58.533 40.909 0.00 0.00 33.46 3.18
4797 5385 1.594518 CGTGCTTGTTCAGTTGTTCCG 60.595 52.381 0.00 0.00 0.00 4.30
4812 5400 3.270027 TGTTCCGCATCACCAGAATTAG 58.730 45.455 0.00 0.00 0.00 1.73
4813 5401 1.953559 TCCGCATCACCAGAATTAGC 58.046 50.000 0.00 0.00 0.00 3.09
4921 5510 1.530183 GGAATGGGCTGATCCTGGC 60.530 63.158 0.00 0.00 34.39 4.85
5086 5675 6.476380 GCACTTTCTCAGTTCTCTCATCATAG 59.524 42.308 0.00 0.00 30.92 2.23
5096 5685 5.883685 TCTCTCATCATAGTGAATTGCCT 57.116 39.130 0.00 0.00 0.00 4.75
5115 5705 5.847304 TGCCTTATCAGTGTATCAAGCTAG 58.153 41.667 0.00 0.00 0.00 3.42
5120 5712 7.816995 CCTTATCAGTGTATCAAGCTAGATTCC 59.183 40.741 0.00 0.00 0.00 3.01
5174 5766 2.492088 GGAAGGACATGGTTTTAGCCAC 59.508 50.000 0.00 0.00 41.94 5.01
5177 5769 1.467342 GGACATGGTTTTAGCCACGAC 59.533 52.381 0.00 0.00 41.94 4.34
5240 5832 7.913674 ATGGTATTTCTCTGACTGTTTCTTC 57.086 36.000 0.00 0.00 0.00 2.87
5253 5847 8.322906 TGACTGTTTCTTCAGGTTGTTATATG 57.677 34.615 0.00 0.00 39.48 1.78
5274 5870 0.541392 TTGCTGTGTCCTGAGTGTGT 59.459 50.000 0.00 0.00 0.00 3.72
5277 5873 1.270518 GCTGTGTCCTGAGTGTGTGAT 60.271 52.381 0.00 0.00 0.00 3.06
5278 5874 2.410939 CTGTGTCCTGAGTGTGTGATG 58.589 52.381 0.00 0.00 0.00 3.07
5279 5875 2.036346 CTGTGTCCTGAGTGTGTGATGA 59.964 50.000 0.00 0.00 0.00 2.92
5281 5877 3.831911 TGTGTCCTGAGTGTGTGATGATA 59.168 43.478 0.00 0.00 0.00 2.15
5361 5957 3.009723 GCAGCTTGTCTTTGCACCTATA 58.990 45.455 0.00 0.00 37.75 1.31
5412 6008 0.834687 TACCCTCAGGCTTCCGTGTT 60.835 55.000 0.00 0.00 36.11 3.32
5441 6037 4.099881 ACTGGACACAAAGACGGTTAGTAA 59.900 41.667 0.00 0.00 0.00 2.24
5442 6038 4.370917 TGGACACAAAGACGGTTAGTAAC 58.629 43.478 4.32 4.32 0.00 2.50
5443 6039 4.141981 TGGACACAAAGACGGTTAGTAACA 60.142 41.667 14.81 0.00 0.00 2.41
5448 6044 6.539464 ACACAAAGACGGTTAGTAACATTTGA 59.461 34.615 24.07 0.00 31.96 2.69
5449 6045 7.227910 ACACAAAGACGGTTAGTAACATTTGAT 59.772 33.333 24.07 15.49 31.96 2.57
5453 6049 8.561738 AAGACGGTTAGTAACATTTGATCAAT 57.438 30.769 9.40 0.00 0.00 2.57
5455 6051 6.551736 ACGGTTAGTAACATTTGATCAATGC 58.448 36.000 9.40 0.00 45.74 3.56
5456 6052 6.374333 ACGGTTAGTAACATTTGATCAATGCT 59.626 34.615 9.40 5.83 45.74 3.79
5457 6053 6.688385 CGGTTAGTAACATTTGATCAATGCTG 59.312 38.462 9.40 9.86 45.74 4.41
5458 6054 6.473455 GGTTAGTAACATTTGATCAATGCTGC 59.527 38.462 9.40 5.36 45.74 5.25
5460 6056 8.397906 GTTAGTAACATTTGATCAATGCTGCTA 58.602 33.333 9.40 10.71 45.74 3.49
5461 6057 7.578310 AGTAACATTTGATCAATGCTGCTAT 57.422 32.000 9.40 0.00 45.74 2.97
5474 6070 8.498054 TCAATGCTGCTATTATATTCCTAAGC 57.502 34.615 0.00 0.00 0.00 3.09
5477 6073 6.644347 TGCTGCTATTATATTCCTAAGCCTC 58.356 40.000 0.00 0.00 0.00 4.70
5500 6096 9.653287 CCTCATCTTGTTTTAGTTGTGATACTA 57.347 33.333 0.00 0.00 0.00 1.82
5570 6167 2.016704 CACACGCACACTCGACCTC 61.017 63.158 0.00 0.00 0.00 3.85
5585 6182 4.514577 CTCGCGTCCGCCCTTGAT 62.515 66.667 5.77 0.00 37.98 2.57
5594 6191 0.394216 CCGCCCTTGATGTTGGATCA 60.394 55.000 0.00 0.00 0.00 2.92
5627 6224 1.074090 TGGTTCAGGTGACTCCCCA 60.074 57.895 0.00 0.00 40.21 4.96
5643 6240 2.742372 CAGGTGGGTGCAGTACGC 60.742 66.667 0.00 0.00 42.21 4.42
5693 6290 1.084370 CATTCGAGAACCACCTCCGC 61.084 60.000 0.00 0.00 0.00 5.54
5735 6332 0.830648 GGCAGTATGTGAGGGCTGTA 59.169 55.000 0.00 0.00 39.31 2.74
5747 6344 0.751643 GGGCTGTAATGGCATCGGTT 60.752 55.000 0.00 0.00 0.00 4.44
5825 6422 3.086600 CACCCTCCAGGCTCTCCC 61.087 72.222 0.00 0.00 40.58 4.30
5852 6449 3.490933 CGCTTACACTTGCTAGCTGGATA 60.491 47.826 17.23 3.49 0.00 2.59
5855 6452 2.752030 ACACTTGCTAGCTGGATAGGA 58.248 47.619 17.23 0.00 0.00 2.94
5922 6540 6.623486 TGAAATCATGTATGCTTCTGTTTGG 58.377 36.000 0.00 0.00 0.00 3.28
5948 6603 6.033966 CACTGTTTCTTAAGTTGTGGAAACC 58.966 40.000 18.46 0.00 43.68 3.27
5963 6618 3.832237 AACCTGCAGGGCTCACACG 62.832 63.158 35.42 8.48 40.27 4.49
6017 6672 1.671901 CCGACTCTCCCCTGAAGCTC 61.672 65.000 0.00 0.00 0.00 4.09
6038 6693 3.923864 TGGAACCACAGCGACGCT 61.924 61.111 18.46 18.46 40.77 5.07
6148 6807 2.512476 ACTGAAACCACCACCTAACCTT 59.488 45.455 0.00 0.00 0.00 3.50
6149 6808 2.884639 CTGAAACCACCACCTAACCTTG 59.115 50.000 0.00 0.00 0.00 3.61
6151 6810 2.651382 AACCACCACCTAACCTTGAC 57.349 50.000 0.00 0.00 0.00 3.18
6153 6812 1.847737 ACCACCACCTAACCTTGACAA 59.152 47.619 0.00 0.00 0.00 3.18
6155 6814 2.819608 CCACCACCTAACCTTGACAATG 59.180 50.000 0.00 0.00 0.00 2.82
6163 6822 5.533528 ACCTAACCTTGACAATGTGTTAACC 59.466 40.000 2.48 0.00 0.00 2.85
6169 6828 5.163457 CCTTGACAATGTGTTAACCTTGGTT 60.163 40.000 10.11 10.11 36.54 3.67
6189 6848 2.456119 GCCTGCTCCGATGTTCACG 61.456 63.158 0.00 0.00 0.00 4.35
6195 6854 1.508632 CTCCGATGTTCACGTTTGGT 58.491 50.000 0.00 0.00 0.00 3.67
6213 6872 2.961893 TAACAACGCGGCCCTGGAT 61.962 57.895 12.47 0.00 0.00 3.41
6273 6932 2.203771 GGAGGCGATCCTGGACGAT 61.204 63.158 18.44 8.82 44.46 3.73
6618 7282 1.144057 CTGTGACCGCCATCTACCC 59.856 63.158 0.00 0.00 0.00 3.69
6651 7315 1.141053 AGCAAAAGACCTTCCTGTCGT 59.859 47.619 0.00 0.00 40.26 4.34
6659 7323 1.524863 CCTTCCTGTCGTCTGTCCGT 61.525 60.000 0.00 0.00 0.00 4.69
6681 7345 8.262227 TCCGTTTTGTATGGTTCAGTTATCTAT 58.738 33.333 0.00 0.00 34.27 1.98
6743 7407 5.545588 TCTTTGTTGAGAACCTGATCTGAG 58.454 41.667 0.38 0.00 0.00 3.35
6833 7497 3.517602 TGTGTGTGTAACTGTCAGTGTC 58.482 45.455 6.18 3.63 38.04 3.67
6869 7533 2.029380 GGCTTGCGGTTCCTGTAATTTT 60.029 45.455 0.00 0.00 0.00 1.82
6953 7617 8.674263 TCTTAGGATAACTTAGTTCTAGTCCG 57.326 38.462 0.00 0.00 0.00 4.79
7026 7690 5.409214 GGCTTTGTAGATGTTGGTACGTTTA 59.591 40.000 0.00 0.00 0.00 2.01
7045 7709 8.314143 ACGTTTATCTTTAGATTTGGTCGAAA 57.686 30.769 0.00 0.00 36.05 3.46
7085 7751 8.209917 ACTTAGAACAAACCTACAACTTCAAG 57.790 34.615 0.00 0.00 0.00 3.02
7096 7762 7.758495 ACCTACAACTTCAAGTGTTTTGTAAG 58.242 34.615 0.00 0.00 33.44 2.34
7155 7821 8.970859 AACTTGAATTCCATTCTATCCACTAG 57.029 34.615 2.27 0.00 39.96 2.57
7156 7822 6.995091 ACTTGAATTCCATTCTATCCACTAGC 59.005 38.462 2.27 0.00 39.96 3.42
7157 7823 6.499106 TGAATTCCATTCTATCCACTAGCA 57.501 37.500 2.27 0.00 39.96 3.49
7164 7830 2.248248 TCTATCCACTAGCAATCCCCG 58.752 52.381 0.00 0.00 0.00 5.73
7168 7834 1.522092 CACTAGCAATCCCCGCAGA 59.478 57.895 0.00 0.00 0.00 4.26
7184 7850 2.033407 CGCAGAAACAGAAGTGTCAGTG 60.033 50.000 0.00 0.00 35.08 3.66
7198 7864 1.613925 GTCAGTGTACACCTGAGCTCA 59.386 52.381 22.28 17.19 0.00 4.26
7205 7871 3.452264 TGTACACCTGAGCTCATATGCTT 59.548 43.478 18.63 6.32 44.17 3.91
7214 7880 4.100498 TGAGCTCATATGCTTCTGTCATGA 59.900 41.667 13.74 0.00 44.17 3.07
7215 7881 5.032327 AGCTCATATGCTTCTGTCATGAA 57.968 39.130 0.00 0.00 40.93 2.57
7234 7900 9.458374 GTCATGAAAAGAGTAAAATCCGAAAAA 57.542 29.630 0.00 0.00 0.00 1.94
7266 7932 9.829507 AAAAAGAACAAAATATGGACATTGTCA 57.170 25.926 18.09 5.42 35.09 3.58
7291 7959 2.504367 ACATTGGTGTGGTCTGCTTAC 58.496 47.619 0.00 0.00 37.14 2.34
7302 7970 4.215399 GTGGTCTGCTTACATGCAAAGTTA 59.785 41.667 9.45 0.00 42.83 2.24
7303 7971 4.824537 TGGTCTGCTTACATGCAAAGTTAA 59.175 37.500 9.45 0.00 42.83 2.01
7304 7972 5.476599 TGGTCTGCTTACATGCAAAGTTAAT 59.523 36.000 9.45 0.00 42.83 1.40
7305 7973 5.801947 GGTCTGCTTACATGCAAAGTTAATG 59.198 40.000 9.45 0.00 42.83 1.90
7306 7974 6.349280 GGTCTGCTTACATGCAAAGTTAATGA 60.349 38.462 9.45 1.08 42.83 2.57
7307 7975 6.524586 GTCTGCTTACATGCAAAGTTAATGAC 59.475 38.462 9.45 7.45 42.83 3.06
7308 7976 6.206438 TCTGCTTACATGCAAAGTTAATGACA 59.794 34.615 9.45 0.00 42.83 3.58
7309 7977 6.923012 TGCTTACATGCAAAGTTAATGACAT 58.077 32.000 9.45 0.00 40.29 3.06
7310 7978 7.377398 TGCTTACATGCAAAGTTAATGACATT 58.623 30.769 5.87 5.87 40.29 2.71
7311 7979 7.871973 TGCTTACATGCAAAGTTAATGACATTT 59.128 29.630 5.89 0.00 40.29 2.32
7312 7980 8.164153 GCTTACATGCAAAGTTAATGACATTTG 58.836 33.333 5.89 0.05 36.07 2.32
7313 7981 9.195411 CTTACATGCAAAGTTAATGACATTTGT 57.805 29.630 5.89 4.04 35.55 2.83
7314 7982 7.410800 ACATGCAAAGTTAATGACATTTGTG 57.589 32.000 5.89 0.00 35.55 3.33
7315 7983 5.903764 TGCAAAGTTAATGACATTTGTGC 57.096 34.783 5.89 6.30 35.55 4.57
7316 7984 5.599732 TGCAAAGTTAATGACATTTGTGCT 58.400 33.333 5.89 0.00 35.55 4.40
7317 7985 5.462729 TGCAAAGTTAATGACATTTGTGCTG 59.537 36.000 5.89 1.14 35.55 4.41
7318 7986 5.107375 GCAAAGTTAATGACATTTGTGCTGG 60.107 40.000 5.89 0.00 35.55 4.85
7319 7987 4.178545 AGTTAATGACATTTGTGCTGGC 57.821 40.909 5.89 0.00 0.00 4.85
7320 7988 3.056607 AGTTAATGACATTTGTGCTGGCC 60.057 43.478 5.89 0.00 0.00 5.36
7321 7989 1.636148 AATGACATTTGTGCTGGCCT 58.364 45.000 3.32 0.00 0.00 5.19
7322 7990 0.892755 ATGACATTTGTGCTGGCCTG 59.107 50.000 3.32 4.26 0.00 4.85
7323 7991 1.180456 TGACATTTGTGCTGGCCTGG 61.180 55.000 12.06 1.66 0.00 4.45
7324 7992 0.895100 GACATTTGTGCTGGCCTGGA 60.895 55.000 12.06 5.61 0.00 3.86
7325 7993 0.469705 ACATTTGTGCTGGCCTGGAA 60.470 50.000 12.06 0.00 0.00 3.53
7326 7994 0.245539 CATTTGTGCTGGCCTGGAAG 59.754 55.000 12.06 0.00 0.00 3.46
7327 7995 0.112995 ATTTGTGCTGGCCTGGAAGA 59.887 50.000 12.06 0.00 34.07 2.87
7328 7996 0.106268 TTTGTGCTGGCCTGGAAGAA 60.106 50.000 12.06 4.22 34.07 2.52
7329 7997 0.823356 TTGTGCTGGCCTGGAAGAAC 60.823 55.000 12.06 1.58 34.07 3.01
7330 7998 1.228245 GTGCTGGCCTGGAAGAACA 60.228 57.895 12.06 0.00 34.07 3.18
7331 7999 1.073722 TGCTGGCCTGGAAGAACAG 59.926 57.895 12.06 0.00 39.46 3.16
7332 8000 1.376466 GCTGGCCTGGAAGAACAGA 59.624 57.895 12.06 0.00 40.97 3.41
7333 8001 0.250901 GCTGGCCTGGAAGAACAGAA 60.251 55.000 12.06 0.00 40.97 3.02
7334 8002 1.528129 CTGGCCTGGAAGAACAGAAC 58.472 55.000 3.32 0.00 40.97 3.01
7335 8003 0.843309 TGGCCTGGAAGAACAGAACA 59.157 50.000 3.32 0.00 40.97 3.18
7336 8004 1.214175 TGGCCTGGAAGAACAGAACAA 59.786 47.619 3.32 0.00 40.97 2.83
7337 8005 2.306847 GGCCTGGAAGAACAGAACAAA 58.693 47.619 0.00 0.00 40.97 2.83
7338 8006 2.693074 GGCCTGGAAGAACAGAACAAAA 59.307 45.455 0.00 0.00 40.97 2.44
7339 8007 3.321968 GGCCTGGAAGAACAGAACAAAAT 59.678 43.478 0.00 0.00 40.97 1.82
7340 8008 4.550422 GCCTGGAAGAACAGAACAAAATC 58.450 43.478 0.00 0.00 40.97 2.17
7341 8009 4.037923 GCCTGGAAGAACAGAACAAAATCA 59.962 41.667 0.00 0.00 40.97 2.57
7342 8010 5.451798 GCCTGGAAGAACAGAACAAAATCAA 60.452 40.000 0.00 0.00 40.97 2.57
7343 8011 6.739565 GCCTGGAAGAACAGAACAAAATCAAT 60.740 38.462 0.00 0.00 40.97 2.57
7344 8012 6.643770 CCTGGAAGAACAGAACAAAATCAATG 59.356 38.462 0.00 0.00 40.97 2.82
7345 8013 5.984926 TGGAAGAACAGAACAAAATCAATGC 59.015 36.000 0.00 0.00 0.00 3.56
7346 8014 6.183360 TGGAAGAACAGAACAAAATCAATGCT 60.183 34.615 0.00 0.00 0.00 3.79
7347 8015 6.703165 GGAAGAACAGAACAAAATCAATGCTT 59.297 34.615 0.00 0.00 0.00 3.91
7348 8016 7.095899 GGAAGAACAGAACAAAATCAATGCTTC 60.096 37.037 0.00 0.00 0.00 3.86
7349 8017 6.808829 AGAACAGAACAAAATCAATGCTTCA 58.191 32.000 0.00 0.00 0.00 3.02
7350 8018 7.267128 AGAACAGAACAAAATCAATGCTTCAA 58.733 30.769 0.00 0.00 0.00 2.69
7351 8019 7.765360 AGAACAGAACAAAATCAATGCTTCAAA 59.235 29.630 0.00 0.00 0.00 2.69
7352 8020 7.846644 ACAGAACAAAATCAATGCTTCAAAA 57.153 28.000 0.00 0.00 0.00 2.44
7353 8021 8.266392 ACAGAACAAAATCAATGCTTCAAAAA 57.734 26.923 0.00 0.00 0.00 1.94
7354 8022 8.895737 ACAGAACAAAATCAATGCTTCAAAAAT 58.104 25.926 0.00 0.00 0.00 1.82
7355 8023 9.165014 CAGAACAAAATCAATGCTTCAAAAATG 57.835 29.630 0.00 0.00 0.00 2.32
7356 8024 7.858879 AGAACAAAATCAATGCTTCAAAAATGC 59.141 29.630 0.00 0.00 0.00 3.56
7357 8025 7.266922 ACAAAATCAATGCTTCAAAAATGCT 57.733 28.000 0.00 0.00 0.00 3.79
7358 8026 7.708998 ACAAAATCAATGCTTCAAAAATGCTT 58.291 26.923 0.00 0.00 0.00 3.91
7359 8027 8.192110 ACAAAATCAATGCTTCAAAAATGCTTT 58.808 25.926 0.00 0.00 0.00 3.51
7360 8028 9.026074 CAAAATCAATGCTTCAAAAATGCTTTT 57.974 25.926 0.00 0.00 35.02 2.27
7382 8050 2.682155 AAAACGGCCTTTTTGAAGCA 57.318 40.000 18.37 0.00 0.00 3.91
7383 8051 2.908688 AAACGGCCTTTTTGAAGCAT 57.091 40.000 0.42 0.00 0.00 3.79
7384 8052 2.438868 AACGGCCTTTTTGAAGCATC 57.561 45.000 0.00 0.00 0.00 3.91
7385 8053 0.603065 ACGGCCTTTTTGAAGCATCC 59.397 50.000 0.00 0.00 0.00 3.51
7386 8054 0.890683 CGGCCTTTTTGAAGCATCCT 59.109 50.000 0.00 0.00 0.00 3.24
7387 8055 1.273327 CGGCCTTTTTGAAGCATCCTT 59.727 47.619 0.00 0.00 0.00 3.36
7388 8056 2.289010 CGGCCTTTTTGAAGCATCCTTT 60.289 45.455 0.00 0.00 0.00 3.11
7389 8057 3.743521 GGCCTTTTTGAAGCATCCTTTT 58.256 40.909 0.00 0.00 0.00 2.27
7390 8058 3.748048 GGCCTTTTTGAAGCATCCTTTTC 59.252 43.478 0.00 0.00 0.00 2.29
7391 8059 4.503817 GGCCTTTTTGAAGCATCCTTTTCT 60.504 41.667 0.00 0.00 0.00 2.52
7392 8060 5.059161 GCCTTTTTGAAGCATCCTTTTCTT 58.941 37.500 0.00 0.00 0.00 2.52
7393 8061 5.528690 GCCTTTTTGAAGCATCCTTTTCTTT 59.471 36.000 0.00 0.00 0.00 2.52
7394 8062 6.512253 GCCTTTTTGAAGCATCCTTTTCTTTG 60.512 38.462 0.00 0.00 0.00 2.77
7395 8063 5.989551 TTTTGAAGCATCCTTTTCTTTGC 57.010 34.783 0.00 0.00 35.34 3.68
7396 8064 3.665745 TGAAGCATCCTTTTCTTTGCC 57.334 42.857 0.00 0.00 35.71 4.52
7397 8065 3.233507 TGAAGCATCCTTTTCTTTGCCT 58.766 40.909 0.00 0.00 35.71 4.75
7398 8066 4.406456 TGAAGCATCCTTTTCTTTGCCTA 58.594 39.130 0.00 0.00 35.71 3.93
7399 8067 4.460382 TGAAGCATCCTTTTCTTTGCCTAG 59.540 41.667 0.00 0.00 35.71 3.02
7400 8068 4.307032 AGCATCCTTTTCTTTGCCTAGA 57.693 40.909 0.00 0.00 35.71 2.43
7401 8069 4.268359 AGCATCCTTTTCTTTGCCTAGAG 58.732 43.478 0.00 0.00 35.71 2.43
7402 8070 3.181492 GCATCCTTTTCTTTGCCTAGAGC 60.181 47.826 0.00 0.00 44.14 4.09
7419 8087 7.366513 GCCTAGAGCATTATGAAAGATTTTCC 58.633 38.462 0.00 0.00 42.97 3.13
7420 8088 7.230309 GCCTAGAGCATTATGAAAGATTTTCCT 59.770 37.037 0.00 0.00 42.97 3.36
7421 8089 9.129532 CCTAGAGCATTATGAAAGATTTTCCTT 57.870 33.333 0.00 0.00 0.00 3.36
7442 8110 8.877864 TCCTTTATGAAATTTCACACATAGGT 57.122 30.769 22.71 7.39 40.49 3.08
7531 8199 8.015658 ACTACTTCTCATTTATTGTTCAAACGC 58.984 33.333 0.00 0.00 0.00 4.84
7532 8200 6.149633 ACTTCTCATTTATTGTTCAAACGCC 58.850 36.000 0.00 0.00 0.00 5.68
7533 8201 5.697473 TCTCATTTATTGTTCAAACGCCA 57.303 34.783 0.00 0.00 0.00 5.69
7534 8202 5.698832 TCTCATTTATTGTTCAAACGCCAG 58.301 37.500 0.00 0.00 0.00 4.85
7535 8203 5.471797 TCTCATTTATTGTTCAAACGCCAGA 59.528 36.000 0.00 0.00 0.00 3.86
7536 8204 6.016693 TCTCATTTATTGTTCAAACGCCAGAA 60.017 34.615 0.00 0.00 0.00 3.02
7537 8205 6.686630 TCATTTATTGTTCAAACGCCAGAAT 58.313 32.000 0.00 0.00 0.00 2.40
7538 8206 6.585702 TCATTTATTGTTCAAACGCCAGAATG 59.414 34.615 0.00 0.00 0.00 2.67
7539 8207 5.697473 TTATTGTTCAAACGCCAGAATGA 57.303 34.783 0.00 0.00 39.69 2.57
7540 8208 4.789012 ATTGTTCAAACGCCAGAATGAT 57.211 36.364 0.00 0.00 39.69 2.45
7541 8209 5.895636 ATTGTTCAAACGCCAGAATGATA 57.104 34.783 0.00 0.00 39.69 2.15
7542 8210 4.944962 TGTTCAAACGCCAGAATGATAG 57.055 40.909 0.00 0.00 39.69 2.08
7543 8211 4.574892 TGTTCAAACGCCAGAATGATAGA 58.425 39.130 0.00 0.00 39.69 1.98
7544 8212 5.000591 TGTTCAAACGCCAGAATGATAGAA 58.999 37.500 0.00 0.00 39.69 2.10
7545 8213 5.106712 TGTTCAAACGCCAGAATGATAGAAC 60.107 40.000 0.00 0.00 39.69 3.01
7546 8214 3.938963 TCAAACGCCAGAATGATAGAACC 59.061 43.478 0.00 0.00 39.69 3.62
7547 8215 3.627395 AACGCCAGAATGATAGAACCA 57.373 42.857 0.00 0.00 39.69 3.67
7548 8216 3.845781 ACGCCAGAATGATAGAACCAT 57.154 42.857 0.00 0.00 39.69 3.55
7549 8217 4.156455 ACGCCAGAATGATAGAACCATT 57.844 40.909 0.00 0.00 39.69 3.16
7550 8218 4.526970 ACGCCAGAATGATAGAACCATTT 58.473 39.130 0.00 0.00 39.69 2.32
7551 8219 4.949856 ACGCCAGAATGATAGAACCATTTT 59.050 37.500 0.00 0.00 39.69 1.82
7552 8220 6.119536 ACGCCAGAATGATAGAACCATTTTA 58.880 36.000 0.00 0.00 39.69 1.52
7553 8221 6.772716 ACGCCAGAATGATAGAACCATTTTAT 59.227 34.615 0.00 0.00 39.69 1.40
7554 8222 7.080099 CGCCAGAATGATAGAACCATTTTATG 58.920 38.462 0.00 0.00 39.69 1.90
7564 8232 2.428544 CCATTTTATGGTCCGGGACA 57.571 50.000 27.32 14.49 45.54 4.02
7565 8233 2.729194 CCATTTTATGGTCCGGGACAA 58.271 47.619 27.32 18.42 45.54 3.18
7566 8234 3.093057 CCATTTTATGGTCCGGGACAAA 58.907 45.455 27.32 18.72 45.54 2.83
7567 8235 3.511934 CCATTTTATGGTCCGGGACAAAA 59.488 43.478 27.32 23.03 45.54 2.44
7568 8236 4.161377 CCATTTTATGGTCCGGGACAAAAT 59.839 41.667 27.32 24.00 45.54 1.82
7569 8237 5.337975 CCATTTTATGGTCCGGGACAAAATT 60.338 40.000 27.32 16.33 45.54 1.82
7570 8238 4.792521 TTTATGGTCCGGGACAAAATTG 57.207 40.909 27.32 0.00 33.68 2.32
7571 8239 2.302587 ATGGTCCGGGACAAAATTGT 57.697 45.000 27.32 0.00 45.65 2.71
7572 8240 2.074729 TGGTCCGGGACAAAATTGTT 57.925 45.000 27.32 0.00 42.43 2.83
7573 8241 1.957877 TGGTCCGGGACAAAATTGTTC 59.042 47.619 27.32 8.25 42.43 3.18
7574 8242 2.235891 GGTCCGGGACAAAATTGTTCT 58.764 47.619 27.32 0.00 42.43 3.01
7575 8243 2.030274 GGTCCGGGACAAAATTGTTCTG 60.030 50.000 27.32 6.44 42.43 3.02
7576 8244 2.621526 GTCCGGGACAAAATTGTTCTGT 59.378 45.455 22.10 0.00 40.72 3.41
7577 8245 3.816523 GTCCGGGACAAAATTGTTCTGTA 59.183 43.478 22.10 0.00 40.72 2.74
7578 8246 4.276431 GTCCGGGACAAAATTGTTCTGTAA 59.724 41.667 22.10 0.00 40.72 2.41
7579 8247 5.048294 GTCCGGGACAAAATTGTTCTGTAAT 60.048 40.000 22.10 0.00 40.72 1.89
7580 8248 6.149807 GTCCGGGACAAAATTGTTCTGTAATA 59.850 38.462 22.10 0.00 40.72 0.98
7581 8249 6.373216 TCCGGGACAAAATTGTTCTGTAATAG 59.627 38.462 11.50 0.00 40.72 1.73
7582 8250 6.150474 CCGGGACAAAATTGTTCTGTAATAGT 59.850 38.462 11.50 0.00 40.72 2.12
7583 8251 7.308951 CCGGGACAAAATTGTTCTGTAATAGTT 60.309 37.037 11.50 0.00 40.72 2.24
7584 8252 8.079809 CGGGACAAAATTGTTCTGTAATAGTTT 58.920 33.333 5.39 0.00 42.43 2.66
7585 8253 9.191995 GGGACAAAATTGTTCTGTAATAGTTTG 57.808 33.333 4.66 0.00 42.43 2.93
7586 8254 9.744468 GGACAAAATTGTTCTGTAATAGTTTGT 57.256 29.630 0.00 0.00 42.43 2.83
7588 8256 9.744468 ACAAAATTGTTCTGTAATAGTTTGTCC 57.256 29.630 0.00 0.00 38.47 4.02
7589 8257 9.743057 CAAAATTGTTCTGTAATAGTTTGTCCA 57.257 29.630 0.00 0.00 0.00 4.02
7594 8262 9.743057 TTGTTCTGTAATAGTTTGTCCAAATTG 57.257 29.630 0.00 0.00 32.36 2.32
7595 8263 8.908903 TGTTCTGTAATAGTTTGTCCAAATTGT 58.091 29.630 0.00 0.00 32.36 2.71
7596 8264 9.180678 GTTCTGTAATAGTTTGTCCAAATTGTG 57.819 33.333 0.00 0.00 32.36 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 3.672295 CTTCAGGCGTGGAGAGGGC 62.672 68.421 9.18 0.00 29.22 5.19
25 27 0.539051 ATTCTTCAGGCGTGGAGAGG 59.461 55.000 16.57 0.00 39.66 3.69
51 53 1.273606 CGCAGAGAGAACCCAGAAGAA 59.726 52.381 0.00 0.00 0.00 2.52
52 54 0.891373 CGCAGAGAGAACCCAGAAGA 59.109 55.000 0.00 0.00 0.00 2.87
53 55 0.891373 TCGCAGAGAGAACCCAGAAG 59.109 55.000 0.00 0.00 0.00 2.85
54 56 1.561643 ATCGCAGAGAGAACCCAGAA 58.438 50.000 0.00 0.00 43.63 3.02
55 57 1.478510 GAATCGCAGAGAGAACCCAGA 59.521 52.381 0.00 0.00 43.63 3.86
131 138 0.378962 GATGAGACGAGACGTGAGGG 59.621 60.000 0.00 0.00 41.37 4.30
132 139 0.378962 GGATGAGACGAGACGTGAGG 59.621 60.000 0.00 0.00 41.37 3.86
137 144 0.805614 ACAGTGGATGAGACGAGACG 59.194 55.000 0.00 0.00 0.00 4.18
138 145 3.427773 GGTTACAGTGGATGAGACGAGAC 60.428 52.174 0.00 0.00 0.00 3.36
139 146 2.753452 GGTTACAGTGGATGAGACGAGA 59.247 50.000 0.00 0.00 0.00 4.04
140 147 2.492088 TGGTTACAGTGGATGAGACGAG 59.508 50.000 0.00 0.00 0.00 4.18
141 148 2.521126 TGGTTACAGTGGATGAGACGA 58.479 47.619 0.00 0.00 0.00 4.20
142 149 3.190079 CATGGTTACAGTGGATGAGACG 58.810 50.000 0.00 0.00 0.00 4.18
146 153 1.064758 GGGCATGGTTACAGTGGATGA 60.065 52.381 0.00 0.00 0.00 2.92
168 175 1.971695 CTCCAAAACGGACTGGGCC 60.972 63.158 0.00 0.00 39.64 5.80
169 176 2.626780 GCTCCAAAACGGACTGGGC 61.627 63.158 0.00 0.00 39.64 5.36
174 181 1.433534 CAGAGAGCTCCAAAACGGAC 58.566 55.000 10.93 0.00 39.64 4.79
215 222 5.460646 ACTGGCAATCGTGTCTAAAAATTG 58.539 37.500 0.00 0.00 0.00 2.32
217 224 6.374333 ACATACTGGCAATCGTGTCTAAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
223 230 2.497675 AGACATACTGGCAATCGTGTCT 59.502 45.455 14.77 14.77 40.85 3.41
224 231 2.604914 CAGACATACTGGCAATCGTGTC 59.395 50.000 11.66 11.66 42.39 3.67
225 232 2.621338 CAGACATACTGGCAATCGTGT 58.379 47.619 0.00 0.00 42.39 4.49
237 244 2.936498 GGGTGTGCACATACAGACATAC 59.064 50.000 24.69 5.47 35.62 2.39
238 245 2.418060 CGGGTGTGCACATACAGACATA 60.418 50.000 24.69 0.00 35.62 2.29
239 246 1.675714 CGGGTGTGCACATACAGACAT 60.676 52.381 24.69 0.00 35.62 3.06
240 247 0.320334 CGGGTGTGCACATACAGACA 60.320 55.000 24.69 0.00 35.62 3.41
241 248 0.320421 ACGGGTGTGCACATACAGAC 60.320 55.000 24.69 8.67 33.26 3.51
242 249 0.394938 AACGGGTGTGCACATACAGA 59.605 50.000 24.69 0.00 0.00 3.41
243 250 0.516877 CAACGGGTGTGCACATACAG 59.483 55.000 24.69 20.64 0.00 2.74
244 251 1.511318 GCAACGGGTGTGCACATACA 61.511 55.000 24.69 0.00 0.00 2.29
245 252 1.209127 GCAACGGGTGTGCACATAC 59.791 57.895 24.69 18.54 0.00 2.39
246 253 0.819666 TTGCAACGGGTGTGCACATA 60.820 50.000 24.69 0.00 38.37 2.29
247 254 2.124060 TTGCAACGGGTGTGCACAT 61.124 52.632 24.69 3.32 38.37 3.21
259 266 0.248458 CGTGTCCCTTGTGTTGCAAC 60.248 55.000 22.83 22.83 32.90 4.17
277 284 4.728882 GCTTGCTGATGTTGGAACTAATCG 60.729 45.833 0.00 0.00 0.00 3.34
293 302 5.218139 GGCTATAGCTAATTTTGCTTGCTG 58.782 41.667 23.53 1.82 41.46 4.41
295 304 4.550422 GGGCTATAGCTAATTTTGCTTGC 58.450 43.478 23.53 11.83 41.46 4.01
311 320 9.617053 ACTACTAGTATTAATCAAAGGGGCTAT 57.383 33.333 2.33 0.00 0.00 2.97
360 370 6.331061 ACCGTGTAGTAATTTCTAGCTCAAG 58.669 40.000 0.00 0.00 0.00 3.02
368 378 7.212274 ACAAACTGTACCGTGTAGTAATTTCT 58.788 34.615 0.00 0.00 0.00 2.52
379 389 4.215965 GCATGTTTACAAACTGTACCGTG 58.784 43.478 6.41 0.00 39.59 4.94
382 395 5.008217 TCACTGCATGTTTACAAACTGTACC 59.992 40.000 6.41 0.00 39.59 3.34
472 528 8.108999 TGAAACATTTCCTTTCCTGAGATGATA 58.891 33.333 2.00 0.00 36.36 2.15
499 555 8.492748 GTCGAGTAGTAGTATTTCAGATGAGAG 58.507 40.741 0.00 0.00 0.00 3.20
508 564 8.636843 CACTTTTGTGTCGAGTAGTAGTATTTC 58.363 37.037 0.00 0.00 44.94 2.17
535 591 6.436027 TCTCTCTCTACTCTCTCTCTCTCTT 58.564 44.000 0.00 0.00 0.00 2.85
860 951 1.329599 CCCCTCGTTTTAATACTGCGC 59.670 52.381 0.00 0.00 0.00 6.09
1043 1140 2.235016 CTACCCGAAGAGGATGAGGAG 58.765 57.143 0.00 0.00 45.00 3.69
1080 1177 1.878522 CATCTTCTTCCCGGCGTCG 60.879 63.158 0.29 0.29 0.00 5.12
1082 1179 2.584608 CCATCTTCTTCCCGGCGT 59.415 61.111 6.01 0.00 0.00 5.68
1388 1518 0.947244 ACGCAAAGGAAGCTGACTTG 59.053 50.000 4.14 0.00 35.82 3.16
1406 1536 4.590850 AAAAATGCACCTCTTCCAGAAC 57.409 40.909 0.00 0.00 0.00 3.01
1440 1570 5.616866 CGCGAGAAAACCACATTACTGAAAT 60.617 40.000 0.00 0.00 0.00 2.17
1469 1612 1.200760 AATTTCCCCAAGCTTGCCCC 61.201 55.000 21.43 0.00 0.00 5.80
1470 1613 0.692476 AAATTTCCCCAAGCTTGCCC 59.308 50.000 21.43 0.00 0.00 5.36
1471 1614 2.153645 CAAAATTTCCCCAAGCTTGCC 58.846 47.619 21.43 0.00 0.00 4.52
1476 1619 1.419762 ACACCCAAAATTTCCCCAAGC 59.580 47.619 0.00 0.00 0.00 4.01
1499 1710 7.335924 CCAAATAAACTCCACCGAAAGAATCTA 59.664 37.037 0.00 0.00 0.00 1.98
1502 1713 5.773176 ACCAAATAAACTCCACCGAAAGAAT 59.227 36.000 0.00 0.00 0.00 2.40
1522 1733 1.418637 ACGGAGTAAAGAAGGCACCAA 59.581 47.619 0.00 0.00 41.94 3.67
1588 1799 4.376717 GGCGTTTACACTTAACTAGCACAC 60.377 45.833 0.00 0.00 0.00 3.82
1595 1806 8.724229 CCTTTATTTAGGCGTTTACACTTAACT 58.276 33.333 0.00 0.00 0.00 2.24
1597 1808 8.720562 GTCCTTTATTTAGGCGTTTACACTTAA 58.279 33.333 0.00 0.00 35.15 1.85
1599 1810 6.128472 CGTCCTTTATTTAGGCGTTTACACTT 60.128 38.462 0.00 0.00 35.15 3.16
1600 1811 5.349543 CGTCCTTTATTTAGGCGTTTACACT 59.650 40.000 0.00 0.00 35.15 3.55
1601 1812 5.446340 CCGTCCTTTATTTAGGCGTTTACAC 60.446 44.000 0.00 0.00 34.89 2.90
1636 1853 3.070018 ACAAAGACCAGATTCGAGCAAG 58.930 45.455 0.00 0.00 0.00 4.01
1785 2003 8.316214 CCAAATCTTCCCATATAAATCCAATGG 58.684 37.037 0.00 0.00 39.95 3.16
1873 2091 3.884037 AGAAATGCCCGAGGGAATATT 57.116 42.857 13.28 6.18 30.64 1.28
1884 2102 2.867647 GCACAGGAAACAAGAAATGCCC 60.868 50.000 0.00 0.00 0.00 5.36
1912 2130 2.915659 AGACGGTGGCGAACTGGA 60.916 61.111 2.45 0.00 39.74 3.86
2007 2227 5.526115 ACACATGCACTGAAGATTCAAAAG 58.474 37.500 0.00 0.00 36.64 2.27
2009 2229 5.530543 TGTACACATGCACTGAAGATTCAAA 59.469 36.000 0.00 0.00 36.64 2.69
2057 2277 6.073058 TGTTCTAACACAGATTTAGCAAGCAG 60.073 38.462 0.00 0.00 33.17 4.24
2371 2595 1.354506 GCAAGATCCTGCGATGTGC 59.645 57.895 0.00 0.00 46.70 4.57
2430 2654 5.428184 AAACTAGTGCTGAAAGGATAGCT 57.572 39.130 0.00 0.00 35.94 3.32
2565 2881 1.136147 CAGCAGCTTGTTCATCGCC 59.864 57.895 0.00 0.00 0.00 5.54
2717 3186 2.300433 TCAGCAACACAGCATGAAACT 58.700 42.857 0.00 0.00 39.69 2.66
2768 3237 3.692101 TGTTAACATGGGTAGGCGAAATG 59.308 43.478 3.59 0.00 0.00 2.32
2774 3243 5.914898 AGAAAATGTTAACATGGGTAGGC 57.085 39.130 21.46 7.57 36.56 3.93
2778 3247 5.543507 TGCAAGAAAATGTTAACATGGGT 57.456 34.783 21.46 9.87 36.56 4.51
2779 3248 6.092533 GGATTGCAAGAAAATGTTAACATGGG 59.907 38.462 21.46 8.90 36.56 4.00
2780 3249 6.875195 AGGATTGCAAGAAAATGTTAACATGG 59.125 34.615 21.46 8.58 36.56 3.66
2781 3250 7.735500 CAGGATTGCAAGAAAATGTTAACATG 58.264 34.615 21.46 10.68 36.56 3.21
2782 3251 7.894376 CAGGATTGCAAGAAAATGTTAACAT 57.106 32.000 15.47 15.47 38.41 2.71
2919 3407 0.321919 TGAGACTGGGCATTGCACTC 60.322 55.000 12.93 11.08 30.56 3.51
2953 3441 2.745884 TTGCATCGACCAAGGCCG 60.746 61.111 0.00 0.00 0.00 6.13
2956 3444 2.336554 CAAACTTGCATCGACCAAGG 57.663 50.000 23.63 11.48 42.98 3.61
3130 3623 6.376018 ACAAACTTGGTAGAAAAACAGCACTA 59.624 34.615 0.00 0.00 0.00 2.74
3138 3631 7.474190 CGGTTAGAACAAACTTGGTAGAAAAA 58.526 34.615 0.00 0.00 0.00 1.94
3533 4034 5.980698 ATGATCATCAACACGAACAGATC 57.019 39.130 1.18 0.00 34.01 2.75
3541 4042 3.703286 ATGGCAATGATCATCAACACG 57.297 42.857 9.06 0.00 0.00 4.49
3604 4117 1.444553 GAGTGTCCAGAAGTCGCGG 60.445 63.158 6.13 0.00 0.00 6.46
3634 4147 0.394762 GGCTGCCATCATCAAGTCCA 60.395 55.000 15.17 0.00 0.00 4.02
3698 4211 9.378551 CAACAACAAGAGGCTTGTATACTTATA 57.621 33.333 12.64 0.00 30.26 0.98
3845 4359 6.509418 ACTTACTGCAACTTTGAAGAAACA 57.491 33.333 3.82 0.00 35.78 2.83
3846 4360 6.910972 GGTACTTACTGCAACTTTGAAGAAAC 59.089 38.462 3.82 0.00 35.78 2.78
4078 4592 9.193806 AGTATTCAAGTGATATGAAAGCCATTT 57.806 29.630 0.00 0.00 39.98 2.32
4234 4798 3.328050 AGCTTTACTACAGAAGGCCAACT 59.672 43.478 5.01 0.00 29.59 3.16
4284 4848 6.073003 CGAGAAAACCTTTGCCTGATATATCC 60.073 42.308 10.25 0.00 0.00 2.59
4287 4851 5.741011 ACGAGAAAACCTTTGCCTGATATA 58.259 37.500 0.00 0.00 0.00 0.86
4578 5166 0.244721 TCAGCACCATCACTCGTCAG 59.755 55.000 0.00 0.00 0.00 3.51
4753 5341 7.549488 ACGAAGATTGTCTATGTAAAAAGAGGG 59.451 37.037 0.00 0.00 0.00 4.30
4788 5376 0.396435 TCTGGTGATGCGGAACAACT 59.604 50.000 3.54 0.00 0.00 3.16
4797 5385 2.225467 GAGGGCTAATTCTGGTGATGC 58.775 52.381 0.00 0.00 0.00 3.91
4812 5400 4.164843 TGGTTAAATATGACAGGAGGGC 57.835 45.455 0.00 0.00 0.00 5.19
4813 5401 5.590259 CACTTGGTTAAATATGACAGGAGGG 59.410 44.000 0.00 0.00 0.00 4.30
4921 5510 2.540361 GGCAGCAGAATAAGCATCAACG 60.540 50.000 0.00 0.00 0.00 4.10
5086 5675 6.925610 TGATACACTGATAAGGCAATTCAC 57.074 37.500 0.00 0.00 0.00 3.18
5096 5685 8.484214 AGGAATCTAGCTTGATACACTGATAA 57.516 34.615 11.15 0.00 0.00 1.75
5115 5705 7.378181 TCAAGGAACTGCAAATAAAAGGAATC 58.622 34.615 0.00 0.00 40.86 2.52
5120 5712 6.089249 ACCTCAAGGAACTGCAAATAAAAG 57.911 37.500 2.30 0.00 40.86 2.27
5174 5766 3.159984 GCAAGAAGCACCTCGTCG 58.840 61.111 0.00 0.00 44.79 5.12
5225 5817 4.446371 ACAACCTGAAGAAACAGTCAGAG 58.554 43.478 2.28 0.00 43.32 3.35
5240 5832 4.458989 ACACAGCAACCATATAACAACCTG 59.541 41.667 0.00 0.00 0.00 4.00
5253 5847 0.179045 ACACTCAGGACACAGCAACC 60.179 55.000 0.00 0.00 0.00 3.77
5274 5870 8.689061 AGCTGCAGTTTCAAAATAATATCATCA 58.311 29.630 16.64 0.00 0.00 3.07
5277 5873 9.142515 CAAAGCTGCAGTTTCAAAATAATATCA 57.857 29.630 16.65 0.00 0.00 2.15
5361 5957 5.505819 CGCATCATCAGCAAAAGATTCATCT 60.506 40.000 0.00 0.00 39.22 2.90
5412 6008 3.056393 CCGTCTTTGTGTCCAGTGGTATA 60.056 47.826 9.54 0.00 0.00 1.47
5448 6044 9.118300 GCTTAGGAATATAATAGCAGCATTGAT 57.882 33.333 0.00 0.00 0.00 2.57
5449 6045 7.554118 GGCTTAGGAATATAATAGCAGCATTGA 59.446 37.037 0.00 0.00 0.00 2.57
5453 6049 6.213397 TGAGGCTTAGGAATATAATAGCAGCA 59.787 38.462 0.00 0.00 0.00 4.41
5454 6050 6.644347 TGAGGCTTAGGAATATAATAGCAGC 58.356 40.000 0.00 0.00 0.00 5.25
5455 6051 8.703743 AGATGAGGCTTAGGAATATAATAGCAG 58.296 37.037 0.00 0.00 0.00 4.24
5456 6052 8.615360 AGATGAGGCTTAGGAATATAATAGCA 57.385 34.615 0.00 0.00 0.00 3.49
5457 6053 9.323985 CAAGATGAGGCTTAGGAATATAATAGC 57.676 37.037 0.00 0.00 0.00 2.97
5461 6057 9.920946 AAAACAAGATGAGGCTTAGGAATATAA 57.079 29.630 0.00 0.00 0.00 0.98
5474 6070 8.553459 AGTATCACAACTAAAACAAGATGAGG 57.447 34.615 0.00 0.00 0.00 3.86
5505 6101 7.386848 TCCAGTTTACAATCAACTAGTTAGCAC 59.613 37.037 8.04 0.00 32.48 4.40
5522 6118 2.744202 CACATCCTGCAGTCCAGTTTAC 59.256 50.000 13.81 0.00 40.06 2.01
5525 6121 0.607489 GCACATCCTGCAGTCCAGTT 60.607 55.000 13.81 0.00 46.29 3.16
5585 6182 1.067295 AAGCTCCACCTGATCCAACA 58.933 50.000 0.00 0.00 0.00 3.33
5594 6191 2.281761 CCACGCAAAGCTCCACCT 60.282 61.111 0.00 0.00 0.00 4.00
5627 6224 4.373116 CGCGTACTGCACCCACCT 62.373 66.667 0.00 0.00 46.97 4.00
5633 6230 2.202570 ACCGATCGCGTACTGCAC 60.203 61.111 10.32 1.42 46.97 4.57
5639 6236 2.475466 GGTCAGGACCGATCGCGTA 61.475 63.158 10.32 0.00 42.29 4.42
5693 6290 1.798725 CATTGCTGCCACGCTTTCG 60.799 57.895 0.00 0.00 42.43 3.46
5735 6332 0.107017 CCCTCTGAACCGATGCCATT 60.107 55.000 0.00 0.00 0.00 3.16
5747 6344 3.731728 GCCATGGCCACCCTCTGA 61.732 66.667 27.24 0.00 34.56 3.27
5825 6422 0.457853 TAGCAAGTGTAAGCGCCTCG 60.458 55.000 2.29 0.00 35.48 4.63
5852 6449 6.886178 TTATTTTACCTGTAGCTCCTTCCT 57.114 37.500 0.00 0.00 0.00 3.36
5855 6452 6.662234 GGGTTTTATTTTACCTGTAGCTCCTT 59.338 38.462 0.00 0.00 34.75 3.36
5922 6540 3.630312 TCCACAACTTAAGAAACAGTGGC 59.370 43.478 20.80 0.00 43.48 5.01
5963 6618 2.812619 CCAGCGGATCTCTTCCCCC 61.813 68.421 0.00 0.00 42.06 5.40
5978 6633 1.937108 GCTTCTTCAGTGTCCGACCAG 60.937 57.143 0.00 0.00 0.00 4.00
6038 6693 3.888323 CCTTCAGAGAGCAGCAGAGTATA 59.112 47.826 0.00 0.00 0.00 1.47
6148 6807 5.009210 GCTAACCAAGGTTAACACATTGTCA 59.991 40.000 12.40 0.00 42.11 3.58
6149 6808 5.458015 GCTAACCAAGGTTAACACATTGTC 58.542 41.667 12.40 0.00 42.11 3.18
6151 6810 4.522789 AGGCTAACCAAGGTTAACACATTG 59.477 41.667 12.40 8.86 43.09 2.82
6153 6812 4.079253 CAGGCTAACCAAGGTTAACACAT 58.921 43.478 12.40 1.45 39.69 3.21
6155 6814 2.228103 GCAGGCTAACCAAGGTTAACAC 59.772 50.000 12.40 6.24 39.69 3.32
6163 6822 0.179000 ATCGGAGCAGGCTAACCAAG 59.821 55.000 0.00 0.00 39.06 3.61
6169 6828 0.175760 GTGAACATCGGAGCAGGCTA 59.824 55.000 0.00 0.00 0.00 3.93
6189 6848 1.370778 GGCCGCGTTGTTACCAAAC 60.371 57.895 4.92 0.00 36.07 2.93
6195 6854 1.615165 TATCCAGGGCCGCGTTGTTA 61.615 55.000 4.92 0.00 0.00 2.41
6213 6872 1.433471 CAGCGTCGTCTCCAGCATA 59.567 57.895 0.00 0.00 0.00 3.14
6388 7048 1.938657 GCGGAGTGCTGCTCTACTCA 61.939 60.000 17.12 0.00 43.91 3.41
6407 7067 3.654414 GTTCAGTCAGTCCTGTAACCAG 58.346 50.000 0.00 0.00 38.50 4.00
6409 7069 2.609737 CCGTTCAGTCAGTCCTGTAACC 60.610 54.545 0.00 0.00 34.02 2.85
6416 7076 0.608640 ACATCCCGTTCAGTCAGTCC 59.391 55.000 0.00 0.00 0.00 3.85
6437 7101 4.732784 CGAAACCCTGTTGTATCAAATGG 58.267 43.478 0.00 0.00 0.00 3.16
6446 7110 0.881600 GGTACGCGAAACCCTGTTGT 60.882 55.000 15.93 0.00 0.00 3.32
6563 7227 1.376424 CATGAAGGCGAGGCAGTGT 60.376 57.895 0.00 0.00 0.00 3.55
6651 7315 4.062293 CTGAACCATACAAAACGGACAGA 58.938 43.478 0.00 0.00 33.31 3.41
6681 7345 5.519808 CCATAGCTAGGATGGGTACATAGA 58.480 45.833 7.04 0.00 40.29 1.98
6743 7407 1.298788 CGGTTCACGGCAACAAACC 60.299 57.895 1.71 0.00 38.98 3.27
6833 7497 1.069022 CAAGCCACTGTTCGGTTCATG 60.069 52.381 0.00 0.00 0.00 3.07
6897 7561 2.810274 CACCTTCATGACCTGACACAAG 59.190 50.000 0.00 0.00 32.17 3.16
7004 7668 8.475331 AGATAAACGTACCAACATCTACAAAG 57.525 34.615 0.00 0.00 0.00 2.77
7005 7669 8.836268 AAGATAAACGTACCAACATCTACAAA 57.164 30.769 0.00 0.00 0.00 2.83
7051 7715 9.841295 TGTAGGTTTGTTCTAAGTCAAACTTAT 57.159 29.630 16.44 8.69 46.88 1.73
7052 7716 9.669887 TTGTAGGTTTGTTCTAAGTCAAACTTA 57.330 29.630 16.44 12.24 46.88 2.24
7054 7718 7.827729 AGTTGTAGGTTTGTTCTAAGTCAAACT 59.172 33.333 16.44 8.40 46.88 2.66
7055 7719 7.982224 AGTTGTAGGTTTGTTCTAAGTCAAAC 58.018 34.615 10.90 10.90 46.95 2.93
7056 7720 8.570068 AAGTTGTAGGTTTGTTCTAAGTCAAA 57.430 30.769 0.00 0.00 0.00 2.69
7071 7737 7.148137 CCTTACAAAACACTTGAAGTTGTAGGT 60.148 37.037 12.80 5.54 36.38 3.08
7076 7742 6.202516 TCCCTTACAAAACACTTGAAGTTG 57.797 37.500 0.00 0.00 0.00 3.16
7085 7751 3.146847 CACTCCCTCCCTTACAAAACAC 58.853 50.000 0.00 0.00 0.00 3.32
7096 7762 2.375014 TTTCAAAACCACTCCCTCCC 57.625 50.000 0.00 0.00 0.00 4.30
7155 7821 0.960364 TCTGTTTCTGCGGGGATTGC 60.960 55.000 0.00 0.00 0.00 3.56
7156 7822 1.470098 CTTCTGTTTCTGCGGGGATTG 59.530 52.381 0.00 0.00 0.00 2.67
7157 7823 1.073923 ACTTCTGTTTCTGCGGGGATT 59.926 47.619 0.00 0.00 0.00 3.01
7164 7830 2.939103 ACACTGACACTTCTGTTTCTGC 59.061 45.455 0.00 0.00 31.87 4.26
7184 7850 3.742433 AGCATATGAGCTCAGGTGTAC 57.258 47.619 22.96 10.71 42.18 2.90
7198 7864 9.453572 TTTACTCTTTTCATGACAGAAGCATAT 57.546 29.630 0.00 0.00 0.00 1.78
7205 7871 7.158697 TCGGATTTTACTCTTTTCATGACAGA 58.841 34.615 0.00 0.00 0.00 3.41
7247 7913 7.984050 TGTTTGTTGACAATGTCCATATTTTGT 59.016 29.630 11.24 0.00 35.55 2.83
7252 7918 7.098477 CCAATGTTTGTTGACAATGTCCATAT 58.902 34.615 11.24 0.00 35.55 1.78
7253 7919 6.041409 ACCAATGTTTGTTGACAATGTCCATA 59.959 34.615 11.24 0.00 35.55 2.74
7266 7932 2.159114 GCAGACCACACCAATGTTTGTT 60.159 45.455 0.00 0.00 36.72 2.83
7291 7959 6.146510 AGCACAAATGTCATTAACTTTGCATG 59.853 34.615 14.31 0.00 33.20 4.06
7302 7970 1.274167 CAGGCCAGCACAAATGTCATT 59.726 47.619 5.01 0.00 0.00 2.57
7303 7971 0.892755 CAGGCCAGCACAAATGTCAT 59.107 50.000 5.01 0.00 0.00 3.06
7304 7972 1.180456 CCAGGCCAGCACAAATGTCA 61.180 55.000 5.01 0.00 0.00 3.58
7305 7973 0.895100 TCCAGGCCAGCACAAATGTC 60.895 55.000 5.01 0.00 0.00 3.06
7306 7974 0.469705 TTCCAGGCCAGCACAAATGT 60.470 50.000 5.01 0.00 0.00 2.71
7307 7975 0.245539 CTTCCAGGCCAGCACAAATG 59.754 55.000 5.01 0.00 0.00 2.32
7308 7976 0.112995 TCTTCCAGGCCAGCACAAAT 59.887 50.000 5.01 0.00 0.00 2.32
7309 7977 0.106268 TTCTTCCAGGCCAGCACAAA 60.106 50.000 5.01 0.00 0.00 2.83
7310 7978 0.823356 GTTCTTCCAGGCCAGCACAA 60.823 55.000 5.01 0.00 0.00 3.33
7311 7979 1.228245 GTTCTTCCAGGCCAGCACA 60.228 57.895 5.01 0.00 0.00 4.57
7312 7980 1.228245 TGTTCTTCCAGGCCAGCAC 60.228 57.895 5.01 0.00 0.00 4.40
7313 7981 1.073722 CTGTTCTTCCAGGCCAGCA 59.926 57.895 5.01 0.00 0.00 4.41
7314 7982 0.250901 TTCTGTTCTTCCAGGCCAGC 60.251 55.000 5.01 0.00 33.14 4.85
7315 7983 1.202806 TGTTCTGTTCTTCCAGGCCAG 60.203 52.381 5.01 0.00 33.14 4.85
7316 7984 0.843309 TGTTCTGTTCTTCCAGGCCA 59.157 50.000 5.01 0.00 33.14 5.36
7317 7985 1.981256 TTGTTCTGTTCTTCCAGGCC 58.019 50.000 0.00 0.00 33.14 5.19
7318 7986 4.037923 TGATTTTGTTCTGTTCTTCCAGGC 59.962 41.667 0.00 0.00 33.14 4.85
7319 7987 5.772825 TGATTTTGTTCTGTTCTTCCAGG 57.227 39.130 0.00 0.00 33.14 4.45
7320 7988 6.145048 GCATTGATTTTGTTCTGTTCTTCCAG 59.855 38.462 0.00 0.00 0.00 3.86
7321 7989 5.984926 GCATTGATTTTGTTCTGTTCTTCCA 59.015 36.000 0.00 0.00 0.00 3.53
7322 7990 6.218746 AGCATTGATTTTGTTCTGTTCTTCC 58.781 36.000 0.00 0.00 0.00 3.46
7323 7991 7.436080 TGAAGCATTGATTTTGTTCTGTTCTTC 59.564 33.333 0.00 0.00 0.00 2.87
7324 7992 7.267128 TGAAGCATTGATTTTGTTCTGTTCTT 58.733 30.769 0.00 0.00 0.00 2.52
7325 7993 6.808829 TGAAGCATTGATTTTGTTCTGTTCT 58.191 32.000 0.00 0.00 0.00 3.01
7326 7994 7.467557 TTGAAGCATTGATTTTGTTCTGTTC 57.532 32.000 0.00 0.00 0.00 3.18
7327 7995 7.846644 TTTGAAGCATTGATTTTGTTCTGTT 57.153 28.000 0.00 0.00 0.00 3.16
7328 7996 7.846644 TTTTGAAGCATTGATTTTGTTCTGT 57.153 28.000 0.00 0.00 0.00 3.41
7329 7997 9.165014 CATTTTTGAAGCATTGATTTTGTTCTG 57.835 29.630 0.00 0.00 0.00 3.02
7330 7998 7.858879 GCATTTTTGAAGCATTGATTTTGTTCT 59.141 29.630 0.00 0.00 0.00 3.01
7331 7999 7.858879 AGCATTTTTGAAGCATTGATTTTGTTC 59.141 29.630 0.00 0.00 0.00 3.18
7332 8000 7.708998 AGCATTTTTGAAGCATTGATTTTGTT 58.291 26.923 0.00 0.00 0.00 2.83
7333 8001 7.266922 AGCATTTTTGAAGCATTGATTTTGT 57.733 28.000 0.00 0.00 0.00 2.83
7334 8002 8.568732 AAAGCATTTTTGAAGCATTGATTTTG 57.431 26.923 0.00 0.00 31.62 2.44
7363 8031 2.682155 TGCTTCAAAAAGGCCGTTTT 57.318 40.000 21.79 21.79 40.26 2.43
7364 8032 2.547855 GGATGCTTCAAAAAGGCCGTTT 60.548 45.455 11.18 11.18 32.79 3.60
7365 8033 1.000843 GGATGCTTCAAAAAGGCCGTT 59.999 47.619 0.00 0.00 32.79 4.44
7366 8034 0.603065 GGATGCTTCAAAAAGGCCGT 59.397 50.000 0.00 0.00 32.79 5.68
7367 8035 0.890683 AGGATGCTTCAAAAAGGCCG 59.109 50.000 0.00 0.00 32.79 6.13
7368 8036 3.407424 AAAGGATGCTTCAAAAAGGCC 57.593 42.857 0.00 0.00 32.79 5.19
7369 8037 4.635223 AGAAAAGGATGCTTCAAAAAGGC 58.365 39.130 0.00 0.00 32.79 4.35
7370 8038 6.512253 GCAAAGAAAAGGATGCTTCAAAAAGG 60.512 38.462 0.00 0.00 35.93 3.11
7371 8039 6.424683 GCAAAGAAAAGGATGCTTCAAAAAG 58.575 36.000 0.00 0.00 35.93 2.27
7372 8040 5.296531 GGCAAAGAAAAGGATGCTTCAAAAA 59.703 36.000 0.00 0.00 38.79 1.94
7373 8041 4.815846 GGCAAAGAAAAGGATGCTTCAAAA 59.184 37.500 0.00 0.00 38.79 2.44
7374 8042 4.101430 AGGCAAAGAAAAGGATGCTTCAAA 59.899 37.500 0.00 0.00 38.79 2.69
7375 8043 3.642848 AGGCAAAGAAAAGGATGCTTCAA 59.357 39.130 0.00 0.00 38.79 2.69
7376 8044 3.233507 AGGCAAAGAAAAGGATGCTTCA 58.766 40.909 0.00 0.00 38.79 3.02
7377 8045 3.949842 AGGCAAAGAAAAGGATGCTTC 57.050 42.857 0.00 0.00 38.79 3.86
7378 8046 4.666512 TCTAGGCAAAGAAAAGGATGCTT 58.333 39.130 0.00 0.00 38.79 3.91
7379 8047 4.268359 CTCTAGGCAAAGAAAAGGATGCT 58.732 43.478 0.00 0.00 38.79 3.79
7380 8048 3.181492 GCTCTAGGCAAAGAAAAGGATGC 60.181 47.826 0.00 0.00 41.35 3.91
7381 8049 4.629251 GCTCTAGGCAAAGAAAAGGATG 57.371 45.455 0.00 0.00 41.35 3.51
7394 8062 7.230309 AGGAAAATCTTTCATAATGCTCTAGGC 59.770 37.037 1.88 0.00 42.22 3.93
7395 8063 8.688747 AGGAAAATCTTTCATAATGCTCTAGG 57.311 34.615 1.88 0.00 0.00 3.02
7416 8084 9.308000 ACCTATGTGTGAAATTTCATAAAGGAA 57.692 29.630 29.25 13.80 39.73 3.36
7417 8085 8.739039 CACCTATGTGTGAAATTTCATAAAGGA 58.261 33.333 29.25 15.40 39.73 3.36
7418 8086 8.739039 TCACCTATGTGTGAAATTTCATAAAGG 58.261 33.333 23.05 24.31 42.06 3.11
7505 8173 8.015658 GCGTTTGAACAATAAATGAGAAGTAGT 58.984 33.333 0.00 0.00 0.00 2.73
7506 8174 7.481798 GGCGTTTGAACAATAAATGAGAAGTAG 59.518 37.037 0.00 0.00 0.00 2.57
7507 8175 7.041030 TGGCGTTTGAACAATAAATGAGAAGTA 60.041 33.333 0.00 0.00 0.00 2.24
7508 8176 6.149633 GGCGTTTGAACAATAAATGAGAAGT 58.850 36.000 0.00 0.00 0.00 3.01
7509 8177 6.148948 TGGCGTTTGAACAATAAATGAGAAG 58.851 36.000 0.00 0.00 0.00 2.85
7510 8178 6.016693 TCTGGCGTTTGAACAATAAATGAGAA 60.017 34.615 0.00 0.00 0.00 2.87
7511 8179 5.471797 TCTGGCGTTTGAACAATAAATGAGA 59.528 36.000 0.00 0.00 0.00 3.27
7512 8180 5.698832 TCTGGCGTTTGAACAATAAATGAG 58.301 37.500 0.00 0.00 0.00 2.90
7513 8181 5.697473 TCTGGCGTTTGAACAATAAATGA 57.303 34.783 0.00 0.00 0.00 2.57
7514 8182 6.585702 TCATTCTGGCGTTTGAACAATAAATG 59.414 34.615 0.00 0.00 0.00 2.32
7515 8183 6.686630 TCATTCTGGCGTTTGAACAATAAAT 58.313 32.000 0.00 0.00 0.00 1.40
7516 8184 6.078202 TCATTCTGGCGTTTGAACAATAAA 57.922 33.333 0.00 0.00 0.00 1.40
7517 8185 5.697473 TCATTCTGGCGTTTGAACAATAA 57.303 34.783 0.00 0.00 0.00 1.40
7518 8186 5.895636 ATCATTCTGGCGTTTGAACAATA 57.104 34.783 0.00 0.00 0.00 1.90
7519 8187 4.789012 ATCATTCTGGCGTTTGAACAAT 57.211 36.364 0.00 0.00 0.00 2.71
7520 8188 5.000591 TCTATCATTCTGGCGTTTGAACAA 58.999 37.500 0.00 0.00 0.00 2.83
7521 8189 4.574892 TCTATCATTCTGGCGTTTGAACA 58.425 39.130 0.00 0.00 0.00 3.18
7522 8190 5.324697 GTTCTATCATTCTGGCGTTTGAAC 58.675 41.667 0.00 0.00 0.00 3.18
7523 8191 4.394920 GGTTCTATCATTCTGGCGTTTGAA 59.605 41.667 0.00 0.00 0.00 2.69
7524 8192 3.938963 GGTTCTATCATTCTGGCGTTTGA 59.061 43.478 0.00 0.00 0.00 2.69
7525 8193 3.689161 TGGTTCTATCATTCTGGCGTTTG 59.311 43.478 0.00 0.00 0.00 2.93
7526 8194 3.950397 TGGTTCTATCATTCTGGCGTTT 58.050 40.909 0.00 0.00 0.00 3.60
7527 8195 3.627395 TGGTTCTATCATTCTGGCGTT 57.373 42.857 0.00 0.00 0.00 4.84
7528 8196 3.845781 ATGGTTCTATCATTCTGGCGT 57.154 42.857 0.00 0.00 0.00 5.68
7529 8197 5.505173 AAAATGGTTCTATCATTCTGGCG 57.495 39.130 0.00 0.00 34.15 5.69
7530 8198 7.373493 CCATAAAATGGTTCTATCATTCTGGC 58.627 38.462 0.00 0.00 45.54 4.85
7545 8213 9.624463 ACAATTTTGTCCCGGACCATAAAATGG 62.624 40.741 20.00 19.39 46.86 3.16
7546 8214 4.792521 TTTTGTCCCGGACCATAAAATG 57.207 40.909 15.24 0.00 0.00 2.32
7547 8215 5.247337 ACAATTTTGTCCCGGACCATAAAAT 59.753 36.000 15.24 15.79 36.50 1.82
7548 8216 4.589374 ACAATTTTGTCCCGGACCATAAAA 59.411 37.500 15.24 14.35 36.50 1.52
7549 8217 4.153411 ACAATTTTGTCCCGGACCATAAA 58.847 39.130 15.24 12.31 36.50 1.40
7550 8218 3.768878 ACAATTTTGTCCCGGACCATAA 58.231 40.909 15.24 6.81 36.50 1.90
7551 8219 3.443145 ACAATTTTGTCCCGGACCATA 57.557 42.857 15.24 0.00 36.50 2.74
7552 8220 2.302587 ACAATTTTGTCCCGGACCAT 57.697 45.000 15.24 1.89 36.50 3.55
7553 8221 1.957877 GAACAATTTTGTCCCGGACCA 59.042 47.619 15.24 0.46 41.31 4.02
7554 8222 2.030274 CAGAACAATTTTGTCCCGGACC 60.030 50.000 15.24 0.00 41.31 4.46
7555 8223 2.621526 ACAGAACAATTTTGTCCCGGAC 59.378 45.455 10.96 10.96 41.31 4.79
7556 8224 2.938838 ACAGAACAATTTTGTCCCGGA 58.061 42.857 0.73 0.00 41.31 5.14
7557 8225 4.839668 TTACAGAACAATTTTGTCCCGG 57.160 40.909 0.00 0.00 41.31 5.73
7558 8226 7.141100 ACTATTACAGAACAATTTTGTCCCG 57.859 36.000 0.00 0.00 41.31 5.14
7559 8227 9.191995 CAAACTATTACAGAACAATTTTGTCCC 57.808 33.333 0.00 0.00 41.31 4.46
7560 8228 9.744468 ACAAACTATTACAGAACAATTTTGTCC 57.256 29.630 0.00 0.00 41.31 4.02
7562 8230 9.744468 GGACAAACTATTACAGAACAATTTTGT 57.256 29.630 0.00 0.00 44.72 2.83
7563 8231 9.743057 TGGACAAACTATTACAGAACAATTTTG 57.257 29.630 0.00 0.00 0.00 2.44
7568 8236 9.743057 CAATTTGGACAAACTATTACAGAACAA 57.257 29.630 0.00 0.00 32.51 2.83
7569 8237 8.908903 ACAATTTGGACAAACTATTACAGAACA 58.091 29.630 0.00 0.00 32.51 3.18
7570 8238 9.180678 CACAATTTGGACAAACTATTACAGAAC 57.819 33.333 0.00 0.00 32.51 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.