Multiple sequence alignment - TraesCS5B01G046800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G046800 chr5B 100.000 8988 0 0 1 8988 52315590 52324577 0.000000e+00 16598.0
1 TraesCS5B01G046800 chr5B 96.367 6056 169 20 264 6282 535103909 535097868 0.000000e+00 9917.0
2 TraesCS5B01G046800 chr5B 96.875 1056 27 3 7014 8065 535097869 535096816 0.000000e+00 1762.0
3 TraesCS5B01G046800 chr5B 93.679 617 33 2 2 618 679851622 679851012 0.000000e+00 918.0
4 TraesCS5B01G046800 chr5B 89.532 363 34 3 6332 6691 33888698 33889059 2.960000e-124 457.0
5 TraesCS5B01G046800 chr5B 88.366 361 38 3 6335 6692 31435495 31435136 1.790000e-116 431.0
6 TraesCS5B01G046800 chr5B 83.702 362 43 4 6332 6691 321208460 321208807 2.420000e-85 327.0
7 TraesCS5B01G046800 chrUn 95.339 5406 189 16 2695 8062 73440559 73445939 0.000000e+00 8528.0
8 TraesCS5B01G046800 chrUn 94.767 1414 63 3 1 1414 73439160 73440562 0.000000e+00 2191.0
9 TraesCS5B01G046800 chr5A 96.479 4828 143 14 1073 5875 32955199 32950374 0.000000e+00 7949.0
10 TraesCS5B01G046800 chr5A 96.516 2153 62 4 5919 8062 32948595 32946447 0.000000e+00 3548.0
11 TraesCS5B01G046800 chr5A 97.456 511 13 0 8406 8916 38996652 38997162 0.000000e+00 872.0
12 TraesCS5B01G046800 chr5A 97.260 511 14 0 8406 8916 39113712 39114222 0.000000e+00 867.0
13 TraesCS5B01G046800 chr5A 89.377 706 46 10 3898 4582 10046590 10045893 0.000000e+00 861.0
14 TraesCS5B01G046800 chr5A 96.020 201 7 1 8088 8287 38979223 38979423 8.700000e-85 326.0
15 TraesCS5B01G046800 chr5A 92.647 136 5 4 8277 8409 38996386 38996519 3.310000e-44 191.0
16 TraesCS5B01G046800 chr5A 93.750 112 3 3 8277 8386 39113408 39113517 2.010000e-36 165.0
17 TraesCS5B01G046800 chr5A 91.071 112 7 3 3498 3608 696955264 696955373 2.020000e-31 148.0
18 TraesCS5B01G046800 chr5A 90.826 109 9 1 8302 8409 39113471 39113579 2.620000e-30 145.0
19 TraesCS5B01G046800 chr5A 100.000 55 0 0 5871 5925 32948663 32948609 1.600000e-17 102.0
20 TraesCS5B01G046800 chr3A 97.065 3782 102 5 2100 5874 336007343 336003564 0.000000e+00 6360.0
21 TraesCS5B01G046800 chr3A 94.058 2171 73 20 5919 8079 335998957 335996833 0.000000e+00 3243.0
22 TraesCS5B01G046800 chr3A 94.500 1800 83 9 1704 3494 58067626 58069418 0.000000e+00 2761.0
23 TraesCS5B01G046800 chr3A 93.777 691 32 2 3 693 14806872 14806193 0.000000e+00 1027.0
24 TraesCS5B01G046800 chr2B 97.016 3519 90 10 264 3770 657485174 657481659 0.000000e+00 5903.0
25 TraesCS5B01G046800 chr2B 95.546 2447 78 8 3859 6282 657481659 657479221 0.000000e+00 3886.0
26 TraesCS5B01G046800 chr2B 96.961 1053 25 3 7014 8062 657479222 657478173 0.000000e+00 1760.0
27 TraesCS5B01G046800 chr2B 96.005 826 32 1 7229 8054 145373651 145372827 0.000000e+00 1341.0
28 TraesCS5B01G046800 chr2B 93.721 653 38 1 1 653 703587361 703588010 0.000000e+00 976.0
29 TraesCS5B01G046800 chr2B 96.000 75 3 0 8914 8988 316312273 316312199 1.230000e-23 122.0
30 TraesCS5B01G046800 chr2B 90.566 53 1 3 4583 4635 686093053 686093005 5.820000e-07 67.6
31 TraesCS5B01G046800 chr6B 96.674 3518 96 12 264 3770 151881351 151884858 0.000000e+00 5829.0
32 TraesCS5B01G046800 chr6B 96.440 3118 92 10 1197 4300 80798629 80801741 0.000000e+00 5125.0
33 TraesCS5B01G046800 chr6B 96.025 2415 73 4 3890 6282 151884866 151887279 0.000000e+00 3906.0
34 TraesCS5B01G046800 chr6B 96.961 1053 26 3 7014 8062 151887278 151888328 0.000000e+00 1762.0
35 TraesCS5B01G046800 chr6B 96.727 947 30 1 264 1209 80789149 80790095 0.000000e+00 1576.0
36 TraesCS5B01G046800 chr6B 95.588 408 15 1 1 408 80788458 80788054 0.000000e+00 651.0
37 TraesCS5B01G046800 chr6B 96.401 389 11 1 7014 7402 80802092 80802477 9.840000e-179 638.0
38 TraesCS5B01G046800 chr6B 94.879 371 19 0 8406 8776 91136587 91136217 1.680000e-161 580.0
39 TraesCS5B01G046800 chr6B 94.857 350 17 1 5933 6282 80801745 80802093 6.140000e-151 545.0
40 TraesCS5B01G046800 chr6B 82.883 333 38 14 8088 8406 91137051 91136724 1.910000e-71 281.0
41 TraesCS5B01G046800 chr6B 98.101 158 1 1 8767 8924 91130851 91130696 3.200000e-69 274.0
42 TraesCS5B01G046800 chr6B 89.000 100 6 5 8892 8988 522064413 522064510 1.590000e-22 119.0
43 TraesCS5B01G046800 chr6B 88.119 101 7 5 8892 8988 57029042 57028943 2.050000e-21 115.0
44 TraesCS5B01G046800 chr2A 96.520 3506 108 9 264 3760 441100712 441104212 0.000000e+00 5786.0
45 TraesCS5B01G046800 chr2A 96.017 2410 72 5 3896 6282 441104212 441106620 0.000000e+00 3897.0
46 TraesCS5B01G046800 chr2A 96.783 1057 28 3 7014 8066 441106619 441107673 0.000000e+00 1759.0
47 TraesCS5B01G046800 chr2A 92.000 50 4 0 8875 8924 652161962 652161913 4.500000e-08 71.3
48 TraesCS5B01G046800 chr7A 93.824 1781 93 13 1726 3494 107709781 107711556 0.000000e+00 2663.0
49 TraesCS5B01G046800 chr7A 93.146 1780 106 10 1726 3492 107679146 107680922 0.000000e+00 2597.0
50 TraesCS5B01G046800 chr7A 96.315 1004 29 2 689 1692 107677929 107678924 0.000000e+00 1642.0
51 TraesCS5B01G046800 chr1B 95.839 1490 52 6 2012 3494 328622239 328620753 0.000000e+00 2399.0
52 TraesCS5B01G046800 chr1B 92.771 83 2 4 8906 8988 670092588 670092510 5.700000e-22 117.0
53 TraesCS5B01G046800 chr1D 93.658 1419 67 14 6372 7776 2454960 2456369 0.000000e+00 2100.0
54 TraesCS5B01G046800 chr1D 81.522 92 13 3 8098 8188 229620321 229620409 1.250000e-08 73.1
55 TraesCS5B01G046800 chr7B 97.512 1005 23 2 689 1692 472920178 472919175 0.000000e+00 1716.0
56 TraesCS5B01G046800 chr7B 97.512 1005 23 2 689 1692 606364579 606365582 0.000000e+00 1716.0
57 TraesCS5B01G046800 chr7B 94.048 84 1 4 8905 8988 736735640 736735561 3.410000e-24 124.0
58 TraesCS5B01G046800 chr6D 95.094 693 27 2 1 693 232760935 232760250 0.000000e+00 1085.0
59 TraesCS5B01G046800 chr6D 94.228 693 31 2 1 693 439863356 439864039 0.000000e+00 1050.0
60 TraesCS5B01G046800 chr7D 94.805 693 27 1 1 693 105871941 105872624 0.000000e+00 1072.0
61 TraesCS5B01G046800 chr7D 89.010 828 58 10 3774 4582 287708659 287707846 0.000000e+00 994.0
62 TraesCS5B01G046800 chr7D 86.310 336 41 5 3596 3928 376561540 376561207 2.390000e-95 361.0
63 TraesCS5B01G046800 chr4A 87.638 542 59 4 155 693 646649134 646649670 2.760000e-174 623.0
64 TraesCS5B01G046800 chr4A 90.566 53 1 3 4583 4635 593756798 593756750 5.820000e-07 67.6
65 TraesCS5B01G046800 chr5D 98.008 251 5 0 8666 8916 49690290 49690540 3.850000e-118 436.0
66 TraesCS5B01G046800 chr5D 96.035 227 9 0 8406 8632 49690063 49690289 3.960000e-98 370.0
67 TraesCS5B01G046800 chr5D 97.015 201 5 1 8088 8287 49671977 49672177 4.020000e-88 337.0
68 TraesCS5B01G046800 chr5D 85.366 123 6 1 8277 8387 49689773 49689895 5.700000e-22 117.0
69 TraesCS5B01G046800 chr5D 100.000 30 0 0 8127 8156 494763953 494763982 1.000000e-03 56.5
70 TraesCS5B01G046800 chr1A 87.258 361 44 2 6332 6691 518506101 518506460 2.340000e-110 411.0
71 TraesCS5B01G046800 chr1A 89.474 95 7 3 8895 8988 504300553 504300461 5.700000e-22 117.0
72 TraesCS5B01G046800 chr3B 89.109 303 31 2 7772 8073 729975426 729975727 8.520000e-100 375.0
73 TraesCS5B01G046800 chr3B 82.895 228 31 7 6473 6692 821242876 821243103 1.980000e-46 198.0
74 TraesCS5B01G046800 chr2D 88.265 196 20 2 6498 6692 126122870 126123063 1.950000e-56 231.0
75 TraesCS5B01G046800 chr4B 96.000 75 3 0 8914 8988 106088122 106088196 1.230000e-23 122.0
76 TraesCS5B01G046800 chr4B 94.937 79 2 2 8911 8988 149153863 149153786 1.230000e-23 122.0
77 TraesCS5B01G046800 chr4B 89.247 93 4 5 8897 8988 447791801 447791714 2.650000e-20 111.0
78 TraesCS5B01G046800 chr4B 94.737 38 1 1 5920 5957 247571439 247571403 3.510000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G046800 chr5B 52315590 52324577 8987 False 16598.000000 16598 100.000000 1 8988 1 chr5B.!!$F2 8987
1 TraesCS5B01G046800 chr5B 535096816 535103909 7093 True 5839.500000 9917 96.621000 264 8065 2 chr5B.!!$R3 7801
2 TraesCS5B01G046800 chr5B 679851012 679851622 610 True 918.000000 918 93.679000 2 618 1 chr5B.!!$R2 616
3 TraesCS5B01G046800 chrUn 73439160 73445939 6779 False 5359.500000 8528 95.053000 1 8062 2 chrUn.!!$F1 8061
4 TraesCS5B01G046800 chr5A 32946447 32955199 8752 True 3866.333333 7949 97.665000 1073 8062 3 chr5A.!!$R2 6989
5 TraesCS5B01G046800 chr5A 10045893 10046590 697 True 861.000000 861 89.377000 3898 4582 1 chr5A.!!$R1 684
6 TraesCS5B01G046800 chr5A 38996386 38997162 776 False 531.500000 872 95.051500 8277 8916 2 chr5A.!!$F3 639
7 TraesCS5B01G046800 chr5A 39113408 39114222 814 False 392.333333 867 93.945333 8277 8916 3 chr5A.!!$F4 639
8 TraesCS5B01G046800 chr3A 336003564 336007343 3779 True 6360.000000 6360 97.065000 2100 5874 1 chr3A.!!$R3 3774
9 TraesCS5B01G046800 chr3A 335996833 335998957 2124 True 3243.000000 3243 94.058000 5919 8079 1 chr3A.!!$R2 2160
10 TraesCS5B01G046800 chr3A 58067626 58069418 1792 False 2761.000000 2761 94.500000 1704 3494 1 chr3A.!!$F1 1790
11 TraesCS5B01G046800 chr3A 14806193 14806872 679 True 1027.000000 1027 93.777000 3 693 1 chr3A.!!$R1 690
12 TraesCS5B01G046800 chr2B 657478173 657485174 7001 True 3849.666667 5903 96.507667 264 8062 3 chr2B.!!$R4 7798
13 TraesCS5B01G046800 chr2B 145372827 145373651 824 True 1341.000000 1341 96.005000 7229 8054 1 chr2B.!!$R1 825
14 TraesCS5B01G046800 chr2B 703587361 703588010 649 False 976.000000 976 93.721000 1 653 1 chr2B.!!$F1 652
15 TraesCS5B01G046800 chr6B 151881351 151888328 6977 False 3832.333333 5829 96.553333 264 8062 3 chr6B.!!$F4 7798
16 TraesCS5B01G046800 chr6B 80798629 80802477 3848 False 2102.666667 5125 95.899333 1197 7402 3 chr6B.!!$F3 6205
17 TraesCS5B01G046800 chr6B 80789149 80790095 946 False 1576.000000 1576 96.727000 264 1209 1 chr6B.!!$F1 945
18 TraesCS5B01G046800 chr6B 91136217 91137051 834 True 430.500000 580 88.881000 8088 8776 2 chr6B.!!$R4 688
19 TraesCS5B01G046800 chr2A 441100712 441107673 6961 False 3814.000000 5786 96.440000 264 8066 3 chr2A.!!$F1 7802
20 TraesCS5B01G046800 chr7A 107709781 107711556 1775 False 2663.000000 2663 93.824000 1726 3494 1 chr7A.!!$F1 1768
21 TraesCS5B01G046800 chr7A 107677929 107680922 2993 False 2119.500000 2597 94.730500 689 3492 2 chr7A.!!$F2 2803
22 TraesCS5B01G046800 chr1B 328620753 328622239 1486 True 2399.000000 2399 95.839000 2012 3494 1 chr1B.!!$R1 1482
23 TraesCS5B01G046800 chr1D 2454960 2456369 1409 False 2100.000000 2100 93.658000 6372 7776 1 chr1D.!!$F1 1404
24 TraesCS5B01G046800 chr7B 472919175 472920178 1003 True 1716.000000 1716 97.512000 689 1692 1 chr7B.!!$R1 1003
25 TraesCS5B01G046800 chr7B 606364579 606365582 1003 False 1716.000000 1716 97.512000 689 1692 1 chr7B.!!$F1 1003
26 TraesCS5B01G046800 chr6D 232760250 232760935 685 True 1085.000000 1085 95.094000 1 693 1 chr6D.!!$R1 692
27 TraesCS5B01G046800 chr6D 439863356 439864039 683 False 1050.000000 1050 94.228000 1 693 1 chr6D.!!$F1 692
28 TraesCS5B01G046800 chr7D 105871941 105872624 683 False 1072.000000 1072 94.805000 1 693 1 chr7D.!!$F1 692
29 TraesCS5B01G046800 chr7D 287707846 287708659 813 True 994.000000 994 89.010000 3774 4582 1 chr7D.!!$R1 808
30 TraesCS5B01G046800 chr4A 646649134 646649670 536 False 623.000000 623 87.638000 155 693 1 chr4A.!!$F1 538
31 TraesCS5B01G046800 chr5D 49689773 49690540 767 False 307.666667 436 93.136333 8277 8916 3 chr5D.!!$F3 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 308 0.165944 GACGGGCGAAGACATTGTTG 59.834 55.000 0.00 0.0 37.00 3.33 F
416 435 0.760945 GGGGATGGAGGACTGACGAT 60.761 60.000 0.00 0.0 0.00 3.73 F
419 438 2.307768 GGATGGAGGACTGACGATGTA 58.692 52.381 0.00 0.0 0.00 2.29 F
2135 2365 1.220206 CCACTCGATTCTGCTGGCT 59.780 57.895 0.00 0.0 0.00 4.75 F
2649 2880 0.884514 GAAGCAAGAAGGTTGAGGCC 59.115 55.000 0.00 0.0 38.24 5.19 F
3333 3589 0.856982 AACCCCATCCTGGTTGTTCA 59.143 50.000 4.19 0.0 44.30 3.18 F
3989 4387 4.647564 AGTCTCAACTCACCATTGGATT 57.352 40.909 10.37 0.0 0.00 3.01 F
5597 6024 0.036732 TGCAAATGAGAAGGGCGACT 59.963 50.000 0.00 0.0 0.00 4.18 F
6470 8634 0.250209 AGCAGCGGCCATCTATGAAG 60.250 55.000 4.82 0.0 42.56 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 1679 0.451383 GAGCGTTGCAACATGCCATA 59.549 50.000 28.01 0.00 44.23 2.74 R
1976 2206 1.113253 CGTGATGTCGTCGTAGATGC 58.887 55.000 0.00 0.00 44.51 3.91 R
2255 2485 2.028020 AGGTTCTCACAACCCGAATCTC 60.028 50.000 0.00 0.00 41.18 2.75 R
3290 3546 1.066502 GGTTTGGGAGCTGAGAGAGTC 60.067 57.143 0.00 0.00 0.00 3.36 R
4103 4506 2.094700 GTGAATCCTGCTGTGTAGACGA 60.095 50.000 0.00 0.00 0.00 4.20 R
4178 4591 5.391312 TGCTTTTTCTCTTATTGGGCTTC 57.609 39.130 0.00 0.00 0.00 3.86 R
5739 6166 0.606604 TCCCTTAGAGTTGGTCGTGC 59.393 55.000 0.00 0.00 0.00 5.34 R
6945 9109 0.250901 AGGAAGATGTGCACACCACC 60.251 55.000 24.37 19.68 44.01 4.61 R
8077 11004 0.242825 GTGTCGTGATCCAGAACCGA 59.757 55.000 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.735772 GCCGCCCCTCTGATTCTGA 61.736 63.158 0.00 0.00 0.00 3.27
246 250 0.910088 GGTGGAGAAGTAGGGGCAGT 60.910 60.000 0.00 0.00 0.00 4.40
300 304 1.445582 GACGACGGGCGAAGACATT 60.446 57.895 11.73 0.00 44.57 2.71
304 308 0.165944 GACGGGCGAAGACATTGTTG 59.834 55.000 0.00 0.00 37.00 3.33
305 309 1.234615 ACGGGCGAAGACATTGTTGG 61.235 55.000 0.00 0.00 37.00 3.77
306 310 1.212751 GGGCGAAGACATTGTTGGC 59.787 57.895 0.00 0.00 37.00 4.52
416 435 0.760945 GGGGATGGAGGACTGACGAT 60.761 60.000 0.00 0.00 0.00 3.73
419 438 2.307768 GGATGGAGGACTGACGATGTA 58.692 52.381 0.00 0.00 0.00 2.29
526 545 3.411517 AGATCAAGCACCCGGGGG 61.412 66.667 27.92 25.22 42.03 5.40
698 717 5.887598 TCATTATCCCCATGCTTGTATATGC 59.112 40.000 0.00 0.00 0.00 3.14
739 758 8.545229 TTTTGGTTTGCATTAGATTTGTATGG 57.455 30.769 0.00 0.00 0.00 2.74
784 803 4.293494 TCAGTGGCATCTTCTCTTAGGAT 58.707 43.478 0.00 0.00 0.00 3.24
861 880 7.912056 TTTCTGTAGAGAAATTGATCCAGTG 57.088 36.000 10.82 0.00 42.23 3.66
1248 1268 6.657836 ACAAAGTTACTACTGTTGTCACAC 57.342 37.500 8.86 1.76 33.94 3.82
1652 1679 7.339466 CCCTTGTTAGTATGTTTTCCAAGCTAT 59.661 37.037 0.00 0.00 0.00 2.97
1767 1996 9.003658 CAGGACTAAGAAAATACATGTTTGACT 57.996 33.333 2.30 0.00 0.00 3.41
1781 2010 6.094603 ACATGTTTGACTCTATTTGAGATGGC 59.905 38.462 0.00 0.00 45.39 4.40
1976 2206 2.940890 TACTACGACTACCGGCGGGG 62.941 65.000 31.78 23.64 43.93 5.73
2020 2250 4.570663 CCATCCTCGTCGACGCCC 62.571 72.222 32.19 0.00 39.60 6.13
2110 2340 4.225942 ACAGCTCCAATTCATGTTCCTCTA 59.774 41.667 0.00 0.00 0.00 2.43
2135 2365 1.220206 CCACTCGATTCTGCTGGCT 59.780 57.895 0.00 0.00 0.00 4.75
2255 2485 1.387756 GTTCCGTTCGTGTATGTTCGG 59.612 52.381 0.00 0.00 39.40 4.30
2338 2568 5.479724 TGGATTTGTTTCTCCATGCATAACA 59.520 36.000 7.70 7.70 36.63 2.41
2345 2575 7.319646 TGTTTCTCCATGCATAACAAATTACC 58.680 34.615 9.07 0.00 0.00 2.85
2423 2653 3.713858 TGGCTTGTGTTCTGAATGTTG 57.286 42.857 0.00 0.00 0.00 3.33
2442 2672 5.432645 TGTTGATTCAGGTGTACAGAACAA 58.567 37.500 0.00 2.27 40.63 2.83
2649 2880 0.884514 GAAGCAAGAAGGTTGAGGCC 59.115 55.000 0.00 0.00 38.24 5.19
2947 3203 5.755861 GCTTAGGTGATTCCTCATGTTCTAC 59.244 44.000 0.00 0.00 44.42 2.59
3188 3444 5.991606 TGCATATAAGAATCGAGGACCTTTG 59.008 40.000 0.00 0.00 0.00 2.77
3290 3546 2.186903 CGGTTGTCCCTCCCATCG 59.813 66.667 0.00 0.00 0.00 3.84
3320 3576 1.551329 GCTCCCAAACCATTAACCCCA 60.551 52.381 0.00 0.00 0.00 4.96
3333 3589 0.856982 AACCCCATCCTGGTTGTTCA 59.143 50.000 4.19 0.00 44.30 3.18
3342 3598 7.728083 CCCCATCCTGGTTGTTCATATATTTTA 59.272 37.037 4.19 0.00 35.17 1.52
3487 3745 5.664294 ATGCATTGGTCTTTTCTGCAATA 57.336 34.783 0.00 0.00 45.03 1.90
3605 3863 9.710900 CCATGCTTGTACAGAGACATATAATAA 57.289 33.333 0.00 0.00 0.00 1.40
3607 3865 9.712305 ATGCTTGTACAGAGACATATAATAACC 57.288 33.333 0.00 0.00 0.00 2.85
3608 3866 8.924303 TGCTTGTACAGAGACATATAATAACCT 58.076 33.333 0.00 0.00 0.00 3.50
3609 3867 9.765795 GCTTGTACAGAGACATATAATAACCTT 57.234 33.333 0.00 0.00 0.00 3.50
3989 4387 4.647564 AGTCTCAACTCACCATTGGATT 57.352 40.909 10.37 0.00 0.00 3.01
4103 4506 6.143915 TCTACTCTTTTACCAGGCTATCCAT 58.856 40.000 0.00 0.00 33.74 3.41
4178 4591 7.067372 TGGATGTTTTTGGAACTATAGCATCAG 59.933 37.037 0.00 0.00 33.86 2.90
4707 5130 5.793817 TCTACGTACCACTGTGTAACTCTA 58.206 41.667 7.08 0.00 38.04 2.43
4716 5139 4.762765 CACTGTGTAACTCTAGAGTGAGGT 59.237 45.833 25.83 12.70 41.58 3.85
4721 5144 9.175312 CTGTGTAACTCTAGAGTGAGGTAATTA 57.825 37.037 25.83 9.15 41.58 1.40
5255 5682 3.447586 AGCACGAGGATAGCTTTTGAGTA 59.552 43.478 0.00 0.00 34.37 2.59
5458 5885 8.842280 ACCACATAAAACGAAGAAATAGACAAA 58.158 29.630 0.00 0.00 0.00 2.83
5597 6024 0.036732 TGCAAATGAGAAGGGCGACT 59.963 50.000 0.00 0.00 0.00 4.18
5739 6166 2.360553 AGATGTGTGACAGCTTCTCG 57.639 50.000 0.00 0.00 43.03 4.04
5748 6175 1.664649 CAGCTTCTCGCACGACCAA 60.665 57.895 0.00 0.00 42.61 3.67
5825 6252 1.227089 CGAATCTGACTGCCGAGGG 60.227 63.158 0.00 0.00 0.00 4.30
6015 8178 3.499737 GTGCAGCAGCGCCGTATT 61.500 61.111 2.29 0.00 45.39 1.89
6046 8210 2.243056 TGCATCGCACGACAAACAT 58.757 47.368 0.00 0.00 31.71 2.71
6071 8235 2.106418 GCGGTCGTCAAACAAAGAAAC 58.894 47.619 0.00 0.00 0.00 2.78
6116 8280 3.998341 GCATTCTGGTGTTCATTTTGCAT 59.002 39.130 0.00 0.00 0.00 3.96
6175 8339 3.612247 TTGCGAGGCTTGCCTCTCC 62.612 63.158 31.15 23.55 34.91 3.71
6328 8492 7.926018 GGGCATGTACGTATTATCATATCATCA 59.074 37.037 0.00 0.00 0.00 3.07
6350 8514 1.283347 TCAAGCTCTCAAGGATGGCT 58.717 50.000 0.00 0.00 34.52 4.75
6352 8516 2.125773 AAGCTCTCAAGGATGGCTTG 57.874 50.000 0.00 0.00 40.95 4.01
6418 8582 5.587844 AGCTGATTGTATGGAGTTGATTGAC 59.412 40.000 0.00 0.00 0.00 3.18
6470 8634 0.250209 AGCAGCGGCCATCTATGAAG 60.250 55.000 4.82 0.00 42.56 3.02
6476 8640 2.880890 GCGGCCATCTATGAAGAATGTT 59.119 45.455 2.24 0.00 34.73 2.71
6478 8642 3.499918 CGGCCATCTATGAAGAATGTTCC 59.500 47.826 2.24 0.00 34.73 3.62
6479 8643 4.723309 GGCCATCTATGAAGAATGTTCCT 58.277 43.478 0.00 0.00 34.73 3.36
6480 8644 5.136105 GGCCATCTATGAAGAATGTTCCTT 58.864 41.667 0.00 0.00 34.73 3.36
6481 8645 5.240403 GGCCATCTATGAAGAATGTTCCTTC 59.760 44.000 0.00 0.00 40.19 3.46
6482 8646 5.240403 GCCATCTATGAAGAATGTTCCTTCC 59.760 44.000 0.00 0.00 39.30 3.46
6483 8647 6.599445 CCATCTATGAAGAATGTTCCTTCCT 58.401 40.000 0.00 0.00 39.30 3.36
6484 8648 7.059156 CCATCTATGAAGAATGTTCCTTCCTT 58.941 38.462 0.00 0.00 39.30 3.36
6493 8657 8.533569 AAGAATGTTCCTTCCTTAGTTGAAAA 57.466 30.769 0.00 0.00 0.00 2.29
6561 8725 1.652619 GACGGACGTTTTAGCTAGCAC 59.347 52.381 18.83 5.09 0.00 4.40
6630 8794 5.793026 TTCTTGTTGATGTTTTGGCAAAC 57.207 34.783 13.10 8.70 42.49 2.93
6785 8949 9.582648 AACAATTACCACTTTTTCCTACATAGT 57.417 29.630 0.00 0.00 0.00 2.12
6899 9063 7.872211 AATTATTTCGAGAAAACGTTATCGC 57.128 32.000 19.69 4.18 45.77 4.58
6900 9064 4.914312 ATTTCGAGAAAACGTTATCGCA 57.086 36.364 19.69 10.74 45.77 5.10
6901 9065 4.914312 TTTCGAGAAAACGTTATCGCAT 57.086 36.364 19.69 0.00 45.77 4.73
6902 9066 4.914312 TTCGAGAAAACGTTATCGCATT 57.086 36.364 19.69 3.41 45.77 3.56
6903 9067 4.914312 TCGAGAAAACGTTATCGCATTT 57.086 36.364 19.69 2.75 45.77 2.32
6904 9068 5.272167 TCGAGAAAACGTTATCGCATTTT 57.728 34.783 19.69 2.09 45.77 1.82
6905 9069 5.681880 TCGAGAAAACGTTATCGCATTTTT 58.318 33.333 19.69 1.43 45.77 1.94
6906 9070 6.819437 TCGAGAAAACGTTATCGCATTTTTA 58.181 32.000 19.69 4.48 45.77 1.52
6907 9071 7.289395 TCGAGAAAACGTTATCGCATTTTTAA 58.711 30.769 19.69 3.93 45.77 1.52
6908 9072 7.476183 TCGAGAAAACGTTATCGCATTTTTAAG 59.524 33.333 19.69 0.00 45.77 1.85
6909 9073 7.476183 CGAGAAAACGTTATCGCATTTTTAAGA 59.524 33.333 14.78 0.00 41.11 2.10
6910 9074 9.109533 GAGAAAACGTTATCGCATTTTTAAGAA 57.890 29.630 0.00 0.00 41.18 2.52
6911 9075 9.453325 AGAAAACGTTATCGCATTTTTAAGAAA 57.547 25.926 0.00 0.00 41.18 2.52
6912 9076 9.494679 GAAAACGTTATCGCATTTTTAAGAAAC 57.505 29.630 0.00 0.00 41.18 2.78
6913 9077 8.563289 AAACGTTATCGCATTTTTAAGAAACA 57.437 26.923 0.00 0.00 41.18 2.83
6914 9078 8.563289 AACGTTATCGCATTTTTAAGAAACAA 57.437 26.923 0.00 0.00 41.18 2.83
6915 9079 8.736751 ACGTTATCGCATTTTTAAGAAACAAT 57.263 26.923 0.00 0.00 41.18 2.71
6916 9080 9.187455 ACGTTATCGCATTTTTAAGAAACAATT 57.813 25.926 0.00 0.00 41.18 2.32
6917 9081 9.446927 CGTTATCGCATTTTTAAGAAACAATTG 57.553 29.630 3.24 3.24 0.00 2.32
6918 9082 9.249844 GTTATCGCATTTTTAAGAAACAATTGC 57.750 29.630 5.05 0.00 0.00 3.56
6919 9083 6.221858 TCGCATTTTTAAGAAACAATTGCC 57.778 33.333 5.05 0.00 0.00 4.52
6920 9084 5.755375 TCGCATTTTTAAGAAACAATTGCCA 59.245 32.000 5.05 0.00 0.00 4.92
6921 9085 6.426328 TCGCATTTTTAAGAAACAATTGCCAT 59.574 30.769 5.05 0.00 0.00 4.40
6922 9086 7.600375 TCGCATTTTTAAGAAACAATTGCCATA 59.400 29.630 5.05 0.00 0.00 2.74
6923 9087 8.389603 CGCATTTTTAAGAAACAATTGCCATAT 58.610 29.630 5.05 0.00 0.00 1.78
6933 9097 9.553064 AGAAACAATTGCCATATTTTGTTTACA 57.447 25.926 5.05 0.00 46.56 2.41
6934 9098 9.592720 GAAACAATTGCCATATTTTGTTTACAC 57.407 29.630 5.05 0.00 46.56 2.90
6935 9099 8.668510 AACAATTGCCATATTTTGTTTACACA 57.331 26.923 5.05 0.00 38.72 3.72
6936 9100 8.309163 ACAATTGCCATATTTTGTTTACACAG 57.691 30.769 5.05 0.00 33.22 3.66
6937 9101 6.966435 ATTGCCATATTTTGTTTACACAGC 57.034 33.333 0.00 0.00 33.22 4.40
6938 9102 4.815269 TGCCATATTTTGTTTACACAGCC 58.185 39.130 0.00 0.00 33.22 4.85
6939 9103 4.281941 TGCCATATTTTGTTTACACAGCCA 59.718 37.500 0.00 0.00 33.22 4.75
6940 9104 4.625311 GCCATATTTTGTTTACACAGCCAC 59.375 41.667 0.00 0.00 33.22 5.01
6941 9105 5.167845 CCATATTTTGTTTACACAGCCACC 58.832 41.667 0.00 0.00 33.22 4.61
6942 9106 2.853731 TTTTGTTTACACAGCCACCG 57.146 45.000 0.00 0.00 33.22 4.94
6943 9107 2.039818 TTTGTTTACACAGCCACCGA 57.960 45.000 0.00 0.00 33.22 4.69
6944 9108 2.264005 TTGTTTACACAGCCACCGAT 57.736 45.000 0.00 0.00 33.22 4.18
6945 9109 1.518325 TGTTTACACAGCCACCGATG 58.482 50.000 0.00 0.00 0.00 3.84
6956 9120 2.281484 ACCGATGGTGGTGTGCAC 60.281 61.111 10.75 10.75 41.85 4.57
6957 9121 2.281414 CCGATGGTGGTGTGCACA 60.281 61.111 17.42 17.42 0.00 4.57
6958 9122 1.675310 CCGATGGTGGTGTGCACAT 60.675 57.895 24.69 5.25 0.00 3.21
6959 9123 1.647545 CCGATGGTGGTGTGCACATC 61.648 60.000 24.69 24.07 37.08 3.06
6960 9124 0.674581 CGATGGTGGTGTGCACATCT 60.675 55.000 29.24 10.55 38.01 2.90
6961 9125 1.538047 GATGGTGGTGTGCACATCTT 58.462 50.000 29.24 12.61 37.37 2.40
6962 9126 1.470098 GATGGTGGTGTGCACATCTTC 59.530 52.381 29.24 20.99 37.37 2.87
6963 9127 0.537143 TGGTGGTGTGCACATCTTCC 60.537 55.000 29.24 27.61 0.00 3.46
6964 9128 0.250901 GGTGGTGTGCACATCTTCCT 60.251 55.000 29.24 0.00 0.00 3.36
6965 9129 1.003118 GGTGGTGTGCACATCTTCCTA 59.997 52.381 29.24 8.95 0.00 2.94
6966 9130 2.356125 GGTGGTGTGCACATCTTCCTAT 60.356 50.000 29.24 0.00 0.00 2.57
6967 9131 2.679837 GTGGTGTGCACATCTTCCTATG 59.320 50.000 29.24 0.00 0.00 2.23
6968 9132 2.571202 TGGTGTGCACATCTTCCTATGA 59.429 45.455 29.24 5.00 0.00 2.15
6969 9133 3.201290 GGTGTGCACATCTTCCTATGAG 58.799 50.000 24.69 0.00 0.00 2.90
6970 9134 3.118629 GGTGTGCACATCTTCCTATGAGA 60.119 47.826 24.69 0.00 0.00 3.27
6971 9135 4.507710 GTGTGCACATCTTCCTATGAGAA 58.492 43.478 24.69 0.00 0.00 2.87
6972 9136 4.331168 GTGTGCACATCTTCCTATGAGAAC 59.669 45.833 24.69 0.00 0.00 3.01
6973 9137 4.223700 TGTGCACATCTTCCTATGAGAACT 59.776 41.667 17.42 0.00 29.91 3.01
6974 9138 5.181748 GTGCACATCTTCCTATGAGAACTT 58.818 41.667 13.17 0.00 0.00 2.66
6975 9139 5.293079 GTGCACATCTTCCTATGAGAACTTC 59.707 44.000 13.17 0.00 0.00 3.01
6976 9140 4.813697 GCACATCTTCCTATGAGAACTTCC 59.186 45.833 0.00 0.00 0.00 3.46
6977 9141 5.046529 CACATCTTCCTATGAGAACTTCCG 58.953 45.833 0.00 0.00 0.00 4.30
6978 9142 4.956700 ACATCTTCCTATGAGAACTTCCGA 59.043 41.667 0.00 0.00 0.00 4.55
6979 9143 5.422331 ACATCTTCCTATGAGAACTTCCGAA 59.578 40.000 0.00 0.00 0.00 4.30
6980 9144 6.098982 ACATCTTCCTATGAGAACTTCCGAAT 59.901 38.462 0.00 0.00 0.00 3.34
6981 9145 7.287927 ACATCTTCCTATGAGAACTTCCGAATA 59.712 37.037 0.00 0.00 0.00 1.75
6982 9146 7.841282 TCTTCCTATGAGAACTTCCGAATAT 57.159 36.000 0.00 0.00 0.00 1.28
6983 9147 8.251383 TCTTCCTATGAGAACTTCCGAATATT 57.749 34.615 0.00 0.00 0.00 1.28
6984 9148 8.705594 TCTTCCTATGAGAACTTCCGAATATTT 58.294 33.333 0.00 0.00 0.00 1.40
6985 9149 9.331282 CTTCCTATGAGAACTTCCGAATATTTT 57.669 33.333 0.00 0.00 0.00 1.82
6986 9150 9.681062 TTCCTATGAGAACTTCCGAATATTTTT 57.319 29.630 0.00 0.00 0.00 1.94
7101 10014 2.749280 AGCCCAAACTAAAGCATTGC 57.251 45.000 0.00 0.00 0.00 3.56
7132 10050 4.627284 TTTAAAAGGTCATCCCACGAGA 57.373 40.909 0.00 0.00 34.66 4.04
7751 10678 1.144936 GCAGAGTCTATTGGGCGCT 59.855 57.895 7.64 0.00 0.00 5.92
7994 10921 9.923786 GTGTTCGTGTTATATTGTTTATGCATA 57.076 29.630 1.16 1.16 0.00 3.14
8070 10997 5.007385 CGGGCACTGTACTAATAAAGACT 57.993 43.478 0.00 0.00 0.00 3.24
8071 10998 6.140303 CGGGCACTGTACTAATAAAGACTA 57.860 41.667 0.00 0.00 0.00 2.59
8072 10999 6.567050 CGGGCACTGTACTAATAAAGACTAA 58.433 40.000 0.00 0.00 0.00 2.24
8073 11000 7.208080 CGGGCACTGTACTAATAAAGACTAAT 58.792 38.462 0.00 0.00 0.00 1.73
8074 11001 7.169308 CGGGCACTGTACTAATAAAGACTAATG 59.831 40.741 0.00 0.00 0.00 1.90
8075 11002 8.202137 GGGCACTGTACTAATAAAGACTAATGA 58.798 37.037 0.00 0.00 0.00 2.57
8076 11003 9.595823 GGCACTGTACTAATAAAGACTAATGAA 57.404 33.333 0.00 0.00 0.00 2.57
8086 11013 8.438676 AATAAAGACTAATGAATCGGTTCTGG 57.561 34.615 10.29 0.00 35.33 3.86
8102 11029 2.143122 TCTGGATCACGACACTTTTGC 58.857 47.619 0.00 0.00 0.00 3.68
8103 11030 1.872952 CTGGATCACGACACTTTTGCA 59.127 47.619 0.00 0.00 0.00 4.08
8110 11037 3.057174 TCACGACACTTTTGCAAAAAGGT 60.057 39.130 23.92 22.52 0.00 3.50
8112 11039 3.057174 ACGACACTTTTGCAAAAAGGTCA 60.057 39.130 32.67 14.43 33.85 4.02
8120 11047 6.654582 ACTTTTGCAAAAAGGTCATCTTGTTT 59.345 30.769 23.92 0.00 35.55 2.83
8156 11083 2.093447 CCGCAGTCCCTCTTTAAGTGAT 60.093 50.000 0.00 0.00 0.00 3.06
8204 11132 4.934356 ACAAATAAGCCCTTGGATCTGAA 58.066 39.130 0.00 0.00 0.00 3.02
8222 11150 3.699134 AAGAATTCCGCCCGGCTCC 62.699 63.158 8.05 0.00 34.68 4.70
8326 11301 4.451150 GTCCATCGGCTCCACGCA 62.451 66.667 0.00 0.00 41.67 5.24
8329 11304 4.457496 CATCGGCTCCACGCACCT 62.457 66.667 0.00 0.00 41.67 4.00
8432 11594 1.648467 GCGTGCTTCCATGACTTCCC 61.648 60.000 0.00 0.00 0.00 3.97
8489 11651 2.311294 GCGTCAATGGCTCGCTATT 58.689 52.632 9.90 0.00 45.29 1.73
8588 11750 2.037121 TCTTCAATCAGTTCCACGAGCA 59.963 45.455 0.00 0.00 0.00 4.26
8628 11790 5.721000 TCCCATGGTAATCAGCAATTTCTTT 59.279 36.000 11.73 0.00 35.40 2.52
8757 11919 8.364142 ACTGCTACCAAATTACTAATTTTGCAA 58.636 29.630 0.00 0.00 38.97 4.08
8758 11920 9.202273 CTGCTACCAAATTACTAATTTTGCAAA 57.798 29.630 8.05 8.05 38.97 3.68
8831 11993 9.476202 GAAAACCAAATGGAATATACAATAGGC 57.524 33.333 6.42 0.00 38.94 3.93
8880 12042 7.994334 ACTGAGGTTACCAAACATTTAGTACAA 59.006 33.333 3.51 0.00 37.34 2.41
8883 12045 8.522542 AGGTTACCAAACATTTAGTACAACAA 57.477 30.769 3.51 0.00 37.34 2.83
8916 12078 1.632409 CATCCCCCATCCATCTACAGG 59.368 57.143 0.00 0.00 0.00 4.00
8917 12079 0.768221 TCCCCCATCCATCTACAGGC 60.768 60.000 0.00 0.00 0.00 4.85
8918 12080 1.061905 CCCCCATCCATCTACAGGCA 61.062 60.000 0.00 0.00 0.00 4.75
8919 12081 0.109342 CCCCATCCATCTACAGGCAC 59.891 60.000 0.00 0.00 0.00 5.01
8920 12082 0.109342 CCCATCCATCTACAGGCACC 59.891 60.000 0.00 0.00 0.00 5.01
8921 12083 0.839277 CCATCCATCTACAGGCACCA 59.161 55.000 0.00 0.00 0.00 4.17
8922 12084 1.202734 CCATCCATCTACAGGCACCAG 60.203 57.143 0.00 0.00 0.00 4.00
8923 12085 0.471617 ATCCATCTACAGGCACCAGC 59.528 55.000 0.00 0.00 41.10 4.85
8924 12086 0.618680 TCCATCTACAGGCACCAGCT 60.619 55.000 0.00 0.00 41.70 4.24
8925 12087 1.123077 CCATCTACAGGCACCAGCTA 58.877 55.000 0.00 0.00 41.70 3.32
8926 12088 1.696336 CCATCTACAGGCACCAGCTAT 59.304 52.381 0.00 0.00 41.70 2.97
8927 12089 2.289320 CCATCTACAGGCACCAGCTATC 60.289 54.545 0.00 0.00 41.70 2.08
8928 12090 1.032794 TCTACAGGCACCAGCTATCG 58.967 55.000 0.00 0.00 41.70 2.92
8929 12091 0.032678 CTACAGGCACCAGCTATCGG 59.967 60.000 0.00 0.00 41.70 4.18
8930 12092 0.686441 TACAGGCACCAGCTATCGGT 60.686 55.000 0.00 0.00 41.70 4.69
8937 12099 2.851263 ACCAGCTATCGGTGTCAAAA 57.149 45.000 0.00 0.00 36.93 2.44
8938 12100 2.423577 ACCAGCTATCGGTGTCAAAAC 58.576 47.619 0.00 0.00 36.93 2.43
8939 12101 1.737793 CCAGCTATCGGTGTCAAAACC 59.262 52.381 0.00 0.00 36.93 3.27
8945 12107 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
8946 12108 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
8947 12109 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
8948 12110 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
8949 12111 0.250553 TGTCAAAACCGGCGGATCTT 60.251 50.000 35.78 19.22 0.00 2.40
8950 12112 0.168128 GTCAAAACCGGCGGATCTTG 59.832 55.000 35.78 28.08 0.00 3.02
8951 12113 0.958382 TCAAAACCGGCGGATCTTGG 60.958 55.000 35.78 19.19 0.00 3.61
8952 12114 1.677633 AAAACCGGCGGATCTTGGG 60.678 57.895 35.78 2.92 0.00 4.12
8953 12115 2.420466 AAAACCGGCGGATCTTGGGT 62.420 55.000 35.78 3.72 0.00 4.51
8954 12116 1.555477 AAACCGGCGGATCTTGGGTA 61.555 55.000 35.78 0.00 0.00 3.69
8955 12117 1.968050 AACCGGCGGATCTTGGGTAG 61.968 60.000 35.78 0.55 0.00 3.18
8956 12118 2.421739 CGGCGGATCTTGGGTAGG 59.578 66.667 0.00 0.00 0.00 3.18
8957 12119 2.829592 GGCGGATCTTGGGTAGGG 59.170 66.667 0.00 0.00 0.00 3.53
8958 12120 2.819284 GGCGGATCTTGGGTAGGGG 61.819 68.421 0.00 0.00 0.00 4.79
8959 12121 2.819284 GCGGATCTTGGGTAGGGGG 61.819 68.421 0.00 0.00 0.00 5.40
8960 12122 1.384082 CGGATCTTGGGTAGGGGGT 60.384 63.158 0.00 0.00 0.00 4.95
8961 12123 1.408453 CGGATCTTGGGTAGGGGGTC 61.408 65.000 0.00 0.00 0.00 4.46
8962 12124 1.060743 GGATCTTGGGTAGGGGGTCC 61.061 65.000 0.00 0.00 0.00 4.46
8963 12125 1.005690 ATCTTGGGTAGGGGGTCCC 59.994 63.158 0.00 0.00 45.90 4.46
8972 12134 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
8974 12136 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
8975 12137 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
8976 12138 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
8977 12139 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
8978 12140 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
8979 12141 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
8980 12142 1.805945 CCGAACTGTGCGTCTAGGC 60.806 63.158 7.51 0.00 0.00 3.93
8981 12143 2.152699 CGAACTGTGCGTCTAGGCG 61.153 63.158 13.55 13.55 35.06 5.52
8982 12144 1.805945 GAACTGTGCGTCTAGGCGG 60.806 63.158 19.86 3.85 35.06 6.13
8983 12145 2.209064 GAACTGTGCGTCTAGGCGGA 62.209 60.000 19.86 14.02 35.06 5.54
8984 12146 1.605058 AACTGTGCGTCTAGGCGGAT 61.605 55.000 19.86 0.00 34.24 4.18
8985 12147 1.589993 CTGTGCGTCTAGGCGGATG 60.590 63.158 19.86 9.25 34.24 3.51
8986 12148 2.279517 GTGCGTCTAGGCGGATGG 60.280 66.667 19.86 0.00 34.24 3.51
8987 12149 2.758327 TGCGTCTAGGCGGATGGT 60.758 61.111 19.86 0.00 35.06 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.823330 GAGTCGGATGGCGTCGGT 61.823 66.667 13.17 0.00 0.00 4.69
216 220 0.106419 TTCTCCACCCAAGCGGTTTT 60.106 50.000 0.00 0.00 45.36 2.43
217 221 0.537371 CTTCTCCACCCAAGCGGTTT 60.537 55.000 0.00 0.00 45.36 3.27
218 222 1.073199 CTTCTCCACCCAAGCGGTT 59.927 57.895 0.00 0.00 45.36 4.44
457 476 2.765807 CTGGGATGGGCGTCCTCT 60.766 66.667 7.97 0.00 38.38 3.69
698 717 4.813027 ACCAAAAACAGATGCATTGCTAG 58.187 39.130 10.49 0.00 0.00 3.42
765 784 4.100808 ACTGATCCTAAGAGAAGATGCCAC 59.899 45.833 0.00 0.00 0.00 5.01
784 803 1.010046 AGGATCTCCCCCATCAACTGA 59.990 52.381 0.00 0.00 36.42 3.41
967 986 4.454161 TGTTCATGGAATTTACACCTGACG 59.546 41.667 0.00 0.00 0.00 4.35
1552 1578 7.435488 CGGAGTACTTGAAGTATAATCCAGTTG 59.565 40.741 22.69 10.82 33.70 3.16
1652 1679 0.451383 GAGCGTTGCAACATGCCATA 59.549 50.000 28.01 0.00 44.23 2.74
1767 1996 2.775418 TGAGGGGCCATCTCAAATAGA 58.225 47.619 20.14 0.00 38.20 1.98
1781 2010 3.365265 GCGTGGCTGTTTGAGGGG 61.365 66.667 0.00 0.00 0.00 4.79
1802 2031 2.839098 CAGGGGTCAGCAGGTGTT 59.161 61.111 0.00 0.00 0.00 3.32
1890 2119 4.008933 GCCTCCGTGTGCTCCACT 62.009 66.667 5.72 0.00 42.20 4.00
1976 2206 1.113253 CGTGATGTCGTCGTAGATGC 58.887 55.000 0.00 0.00 44.51 3.91
2020 2250 2.825836 GGCGAGGATGGTGCTTGG 60.826 66.667 0.00 0.00 0.00 3.61
2022 2252 4.115199 GGGGCGAGGATGGTGCTT 62.115 66.667 0.00 0.00 0.00 3.91
2110 2340 3.438087 CAGCAGAATCGAGTGGAACAAAT 59.562 43.478 0.00 0.00 44.16 2.32
2255 2485 2.028020 AGGTTCTCACAACCCGAATCTC 60.028 50.000 0.00 0.00 41.18 2.75
2338 2568 8.692710 GGAAAGGGAGATTTTTATCGGTAATTT 58.307 33.333 0.00 0.00 0.00 1.82
2345 2575 6.116126 ACAGAGGAAAGGGAGATTTTTATCG 58.884 40.000 0.00 0.00 0.00 2.92
2423 2653 5.294552 GCCTATTGTTCTGTACACCTGAATC 59.705 44.000 0.00 0.00 36.21 2.52
2442 2672 2.775384 TCACCCCATACTTTTCGCCTAT 59.225 45.455 0.00 0.00 0.00 2.57
2631 2862 0.890996 CGGCCTCAACCTTCTTGCTT 60.891 55.000 0.00 0.00 0.00 3.91
2649 2880 4.865365 GGAAGATAGAGACAAACCTGAACG 59.135 45.833 0.00 0.00 0.00 3.95
2687 2919 0.466922 CATCCATGAGACAAGGGGGC 60.467 60.000 0.00 0.00 0.00 5.80
2947 3203 6.525121 TTTCTATTTTCTATGCGATCCACG 57.475 37.500 0.00 0.00 45.66 4.94
3188 3444 5.578853 TGATCATCATCATGCATCCACTGC 61.579 45.833 0.00 0.00 41.67 4.40
3213 3469 2.044832 GATGATGTGCTGCTCGGTGC 62.045 60.000 0.00 0.00 43.25 5.01
3290 3546 1.066502 GGTTTGGGAGCTGAGAGAGTC 60.067 57.143 0.00 0.00 0.00 3.36
3342 3598 9.133627 GTGCATTGGTAAAAACAAAACAAAAAT 57.866 25.926 0.00 0.00 0.00 1.82
3487 3745 8.691661 AACAAGTTATGACTTAGGAACAACAT 57.308 30.769 2.09 0.00 44.14 2.71
3605 3863 5.070047 CCTACCTATGGAACGAATGTAAGGT 59.930 44.000 0.00 0.00 39.38 3.50
3606 3864 5.070047 ACCTACCTATGGAACGAATGTAAGG 59.930 44.000 0.00 0.00 0.00 2.69
3607 3865 5.983720 CACCTACCTATGGAACGAATGTAAG 59.016 44.000 0.00 0.00 0.00 2.34
3608 3866 5.422970 ACACCTACCTATGGAACGAATGTAA 59.577 40.000 0.00 0.00 0.00 2.41
3609 3867 4.957954 ACACCTACCTATGGAACGAATGTA 59.042 41.667 0.00 0.00 0.00 2.29
3708 3966 7.416438 GCATACTGGTATGTTGTACACTCTAGT 60.416 40.741 18.24 1.20 43.57 2.57
4103 4506 2.094700 GTGAATCCTGCTGTGTAGACGA 60.095 50.000 0.00 0.00 0.00 4.20
4178 4591 5.391312 TGCTTTTTCTCTTATTGGGCTTC 57.609 39.130 0.00 0.00 0.00 3.86
5337 5764 5.899547 GGGGGAATTACCTGATGAAAATTCT 59.100 40.000 6.68 0.00 38.06 2.40
5418 5845 7.518052 CGTTTTATGTGGTGTTCGTTTAGGTTA 60.518 37.037 0.00 0.00 0.00 2.85
5424 5851 4.879104 TCGTTTTATGTGGTGTTCGTTT 57.121 36.364 0.00 0.00 0.00 3.60
5458 5885 5.010282 GGTGGATTCCTGATTACTGTTTGT 58.990 41.667 3.95 0.00 0.00 2.83
5530 5957 2.185350 CCGCTCGAGCTGTTCCAT 59.815 61.111 32.88 0.00 39.32 3.41
5550 5977 2.057408 AGCTCTGCCTCCTTCCTCG 61.057 63.158 0.00 0.00 0.00 4.63
5597 6024 0.691078 GTGGTGGCCTCATCTCCCTA 60.691 60.000 3.32 0.00 0.00 3.53
5625 6052 2.264166 GCGCTGCTGACTCTCCTT 59.736 61.111 0.00 0.00 0.00 3.36
5739 6166 0.606604 TCCCTTAGAGTTGGTCGTGC 59.393 55.000 0.00 0.00 0.00 5.34
5748 6175 1.361543 TGGCACTACCTCCCTTAGAGT 59.638 52.381 0.00 0.00 41.47 3.24
5830 6257 4.457496 CCACGCACCCGCAGATCT 62.457 66.667 0.00 0.00 38.40 2.75
6046 8210 4.558178 TCTTTGTTTGACGACCGCTTATA 58.442 39.130 0.00 0.00 0.00 0.98
6102 8266 2.867429 CGAGGGATGCAAAATGAACAC 58.133 47.619 0.00 0.00 0.00 3.32
6116 8280 0.255033 TAGTAGACTGCAGCGAGGGA 59.745 55.000 15.27 0.00 0.00 4.20
6175 8339 4.335874 ACGTACTGTACATAGGAGAGCAAG 59.664 45.833 17.35 0.00 0.00 4.01
6328 8492 2.617532 GCCATCCTTGAGAGCTTGAACT 60.618 50.000 0.00 0.00 0.00 3.01
6350 8514 2.223803 ATGGTACCCGCCAAAATCAA 57.776 45.000 10.07 0.00 42.48 2.57
6352 8516 1.136110 CCAATGGTACCCGCCAAAATC 59.864 52.381 10.07 0.00 42.48 2.17
6368 8532 4.207165 AGAATTACGTTATGGCAGCCAAT 58.793 39.130 20.84 9.89 36.95 3.16
6418 8582 3.284793 TTACCCCCATTGACCATTACG 57.715 47.619 0.00 0.00 0.00 3.18
6470 8634 9.764363 AAATTTTCAACTAAGGAAGGAACATTC 57.236 29.630 0.00 0.00 0.00 2.67
6476 8640 9.421399 AGAAGAAAATTTTCAACTAAGGAAGGA 57.579 29.630 28.00 0.00 39.61 3.36
6542 8706 1.706443 GTGCTAGCTAAAACGTCCGT 58.294 50.000 17.23 0.00 0.00 4.69
6606 8770 5.793026 TTGCCAAAACATCAACAAGAAAC 57.207 34.783 0.00 0.00 0.00 2.78
6630 8794 3.079578 AGGCTCAAATATGGATGCATCG 58.920 45.455 20.15 4.96 0.00 3.84
6692 8856 7.633193 AAACAACACAAGTAAACTGATGGTA 57.367 32.000 0.00 0.00 0.00 3.25
6731 8895 5.381757 ACAATTTGGTAAGTGCTCCTAACA 58.618 37.500 0.78 0.00 32.78 2.41
6832 8996 6.633500 TGCAGTTATCCTAAACAATATGGC 57.367 37.500 0.00 0.00 0.00 4.40
6872 9036 9.467990 CGATAACGTTTTCTCGAAATAATTTGA 57.532 29.630 5.91 0.00 34.17 2.69
6873 9037 8.243786 GCGATAACGTTTTCTCGAAATAATTTG 58.756 33.333 23.23 5.02 41.98 2.32
6874 9038 7.958567 TGCGATAACGTTTTCTCGAAATAATTT 59.041 29.630 23.23 0.00 41.98 1.82
6875 9039 7.457868 TGCGATAACGTTTTCTCGAAATAATT 58.542 30.769 23.23 0.00 41.98 1.40
6876 9040 6.996106 TGCGATAACGTTTTCTCGAAATAAT 58.004 32.000 23.23 2.36 41.98 1.28
6877 9041 6.392353 TGCGATAACGTTTTCTCGAAATAA 57.608 33.333 23.23 0.00 41.98 1.40
6878 9042 6.578020 ATGCGATAACGTTTTCTCGAAATA 57.422 33.333 23.23 11.39 41.98 1.40
6879 9043 4.914312 TGCGATAACGTTTTCTCGAAAT 57.086 36.364 23.23 4.12 41.98 2.17
6880 9044 4.914312 ATGCGATAACGTTTTCTCGAAA 57.086 36.364 23.23 14.42 41.98 3.46
6881 9045 4.914312 AATGCGATAACGTTTTCTCGAA 57.086 36.364 23.23 16.94 41.98 3.71
6882 9046 4.914312 AAATGCGATAACGTTTTCTCGA 57.086 36.364 23.23 13.13 41.98 4.04
6883 9047 5.968251 AAAAATGCGATAACGTTTTCTCG 57.032 34.783 5.91 13.98 41.98 4.04
6884 9048 8.649810 TCTTAAAAATGCGATAACGTTTTCTC 57.350 30.769 5.91 3.69 41.98 2.87
6885 9049 9.453325 TTTCTTAAAAATGCGATAACGTTTTCT 57.547 25.926 5.91 0.00 41.98 2.52
6886 9050 9.494679 GTTTCTTAAAAATGCGATAACGTTTTC 57.505 29.630 5.91 7.48 41.98 2.29
6887 9051 9.021863 TGTTTCTTAAAAATGCGATAACGTTTT 57.978 25.926 5.91 0.00 41.98 2.43
6888 9052 8.563289 TGTTTCTTAAAAATGCGATAACGTTT 57.437 26.923 5.91 0.00 41.98 3.60
6889 9053 8.563289 TTGTTTCTTAAAAATGCGATAACGTT 57.437 26.923 5.88 5.88 41.98 3.99
6890 9054 8.736751 ATTGTTTCTTAAAAATGCGATAACGT 57.263 26.923 0.00 0.00 41.98 3.99
6891 9055 9.446927 CAATTGTTTCTTAAAAATGCGATAACG 57.553 29.630 0.00 0.00 42.93 3.18
6892 9056 9.249844 GCAATTGTTTCTTAAAAATGCGATAAC 57.750 29.630 7.40 0.00 0.00 1.89
6893 9057 8.439286 GGCAATTGTTTCTTAAAAATGCGATAA 58.561 29.630 7.40 0.00 0.00 1.75
6894 9058 7.600375 TGGCAATTGTTTCTTAAAAATGCGATA 59.400 29.630 7.40 0.00 0.00 2.92
6895 9059 6.426328 TGGCAATTGTTTCTTAAAAATGCGAT 59.574 30.769 7.40 0.00 0.00 4.58
6896 9060 5.755375 TGGCAATTGTTTCTTAAAAATGCGA 59.245 32.000 7.40 0.00 0.00 5.10
6897 9061 5.983475 TGGCAATTGTTTCTTAAAAATGCG 58.017 33.333 7.40 0.00 0.00 4.73
6910 9074 8.668510 TGTGTAAACAAAATATGGCAATTGTT 57.331 26.923 7.40 14.33 45.17 2.83
6911 9075 7.095271 GCTGTGTAAACAAAATATGGCAATTGT 60.095 33.333 7.40 0.00 37.59 2.71
6912 9076 7.235777 GCTGTGTAAACAAAATATGGCAATTG 58.764 34.615 0.00 0.00 0.00 2.32
6913 9077 6.371271 GGCTGTGTAAACAAAATATGGCAATT 59.629 34.615 0.00 0.00 0.00 2.32
6914 9078 5.874261 GGCTGTGTAAACAAAATATGGCAAT 59.126 36.000 0.00 0.00 0.00 3.56
6915 9079 5.221521 TGGCTGTGTAAACAAAATATGGCAA 60.222 36.000 0.00 0.00 0.00 4.52
6916 9080 4.281941 TGGCTGTGTAAACAAAATATGGCA 59.718 37.500 0.00 0.00 0.00 4.92
6917 9081 4.625311 GTGGCTGTGTAAACAAAATATGGC 59.375 41.667 0.00 0.00 0.00 4.40
6918 9082 5.167845 GGTGGCTGTGTAAACAAAATATGG 58.832 41.667 0.00 0.00 0.00 2.74
6919 9083 4.856487 CGGTGGCTGTGTAAACAAAATATG 59.144 41.667 0.00 0.00 0.00 1.78
6920 9084 4.762765 TCGGTGGCTGTGTAAACAAAATAT 59.237 37.500 0.00 0.00 0.00 1.28
6921 9085 4.135306 TCGGTGGCTGTGTAAACAAAATA 58.865 39.130 0.00 0.00 0.00 1.40
6922 9086 2.952978 TCGGTGGCTGTGTAAACAAAAT 59.047 40.909 0.00 0.00 0.00 1.82
6923 9087 2.366533 TCGGTGGCTGTGTAAACAAAA 58.633 42.857 0.00 0.00 0.00 2.44
6924 9088 2.039818 TCGGTGGCTGTGTAAACAAA 57.960 45.000 0.00 0.00 0.00 2.83
6925 9089 1.876799 CATCGGTGGCTGTGTAAACAA 59.123 47.619 0.00 0.00 0.00 2.83
6926 9090 1.518325 CATCGGTGGCTGTGTAAACA 58.482 50.000 0.00 0.00 0.00 2.83
6927 9091 0.802494 CCATCGGTGGCTGTGTAAAC 59.198 55.000 0.00 0.00 39.01 2.01
6928 9092 3.241493 CCATCGGTGGCTGTGTAAA 57.759 52.632 0.00 0.00 39.01 2.01
6939 9103 2.281484 GTGCACACCACCATCGGT 60.281 61.111 13.17 0.00 41.07 4.69
6940 9104 1.647545 GATGTGCACACCACCATCGG 61.648 60.000 24.37 0.00 44.01 4.18
6941 9105 0.674581 AGATGTGCACACCACCATCG 60.675 55.000 24.37 0.00 44.01 3.84
6942 9106 1.470098 GAAGATGTGCACACCACCATC 59.530 52.381 24.37 14.78 44.01 3.51
6943 9107 1.538047 GAAGATGTGCACACCACCAT 58.462 50.000 24.37 4.53 44.01 3.55
6944 9108 0.537143 GGAAGATGTGCACACCACCA 60.537 55.000 24.37 0.00 44.01 4.17
6945 9109 0.250901 AGGAAGATGTGCACACCACC 60.251 55.000 24.37 19.68 44.01 4.61
6946 9110 2.472695 TAGGAAGATGTGCACACCAC 57.527 50.000 24.37 16.31 44.90 4.16
6947 9111 2.571202 TCATAGGAAGATGTGCACACCA 59.429 45.455 24.37 9.85 0.00 4.17
6948 9112 3.118629 TCTCATAGGAAGATGTGCACACC 60.119 47.826 24.37 18.79 0.00 4.16
6949 9113 4.128925 TCTCATAGGAAGATGTGCACAC 57.871 45.455 24.37 15.97 0.00 3.82
6950 9114 4.223700 AGTTCTCATAGGAAGATGTGCACA 59.776 41.667 24.08 24.08 0.00 4.57
6951 9115 4.764172 AGTTCTCATAGGAAGATGTGCAC 58.236 43.478 10.75 10.75 0.00 4.57
6952 9116 5.423015 GAAGTTCTCATAGGAAGATGTGCA 58.577 41.667 0.00 0.00 0.00 4.57
6953 9117 4.813697 GGAAGTTCTCATAGGAAGATGTGC 59.186 45.833 2.25 0.00 0.00 4.57
6954 9118 5.046529 CGGAAGTTCTCATAGGAAGATGTG 58.953 45.833 2.25 0.00 0.00 3.21
6955 9119 4.956700 TCGGAAGTTCTCATAGGAAGATGT 59.043 41.667 2.25 0.00 0.00 3.06
6956 9120 5.521906 TCGGAAGTTCTCATAGGAAGATG 57.478 43.478 2.25 0.00 0.00 2.90
6957 9121 6.739331 ATTCGGAAGTTCTCATAGGAAGAT 57.261 37.500 2.25 0.00 0.00 2.40
6958 9122 7.841282 ATATTCGGAAGTTCTCATAGGAAGA 57.159 36.000 2.25 0.00 0.00 2.87
6959 9123 8.894768 AAATATTCGGAAGTTCTCATAGGAAG 57.105 34.615 2.25 0.00 0.00 3.46
6960 9124 9.681062 AAAAATATTCGGAAGTTCTCATAGGAA 57.319 29.630 2.25 0.00 0.00 3.36
7114 10032 3.775316 AGTATCTCGTGGGATGACCTTTT 59.225 43.478 0.00 0.00 41.11 2.27
7192 10110 2.663602 CAGGCATAATCTATCACGCGTC 59.336 50.000 9.86 0.00 0.00 5.19
7279 10197 7.953005 ATACCAACCAATGATTTACATGTCA 57.047 32.000 0.00 0.00 39.39 3.58
7456 10382 7.558161 GCATGAGGCTATTATGTGCAATATA 57.442 36.000 0.00 0.00 40.25 0.86
7751 10678 3.979101 TGTCACTCATACATCCAAGCA 57.021 42.857 0.00 0.00 0.00 3.91
8062 10989 7.792032 TCCAGAACCGATTCATTAGTCTTTAT 58.208 34.615 0.00 0.00 37.29 1.40
8066 10993 5.363868 TGATCCAGAACCGATTCATTAGTCT 59.636 40.000 0.00 0.00 37.29 3.24
8067 10994 5.463724 GTGATCCAGAACCGATTCATTAGTC 59.536 44.000 0.00 0.00 37.29 2.59
8068 10995 5.360591 GTGATCCAGAACCGATTCATTAGT 58.639 41.667 0.00 0.00 37.29 2.24
8069 10996 4.445718 CGTGATCCAGAACCGATTCATTAG 59.554 45.833 0.00 0.00 37.29 1.73
8070 10997 4.098807 TCGTGATCCAGAACCGATTCATTA 59.901 41.667 0.00 0.00 37.29 1.90
8071 10998 3.118775 TCGTGATCCAGAACCGATTCATT 60.119 43.478 0.00 0.00 37.29 2.57
8072 10999 2.430694 TCGTGATCCAGAACCGATTCAT 59.569 45.455 0.00 0.00 37.29 2.57
8073 11000 1.822371 TCGTGATCCAGAACCGATTCA 59.178 47.619 0.00 0.00 37.29 2.57
8074 11001 2.194271 GTCGTGATCCAGAACCGATTC 58.806 52.381 0.00 0.00 34.78 2.52
8075 11002 1.548719 TGTCGTGATCCAGAACCGATT 59.451 47.619 0.00 0.00 0.00 3.34
8076 11003 1.135083 GTGTCGTGATCCAGAACCGAT 60.135 52.381 0.00 0.00 0.00 4.18
8077 11004 0.242825 GTGTCGTGATCCAGAACCGA 59.757 55.000 0.00 0.00 0.00 4.69
8078 11005 0.243907 AGTGTCGTGATCCAGAACCG 59.756 55.000 0.00 0.00 0.00 4.44
8079 11006 2.457366 AAGTGTCGTGATCCAGAACC 57.543 50.000 0.00 0.00 0.00 3.62
8080 11007 3.607078 GCAAAAGTGTCGTGATCCAGAAC 60.607 47.826 0.00 0.00 0.00 3.01
8081 11008 2.548057 GCAAAAGTGTCGTGATCCAGAA 59.452 45.455 0.00 0.00 0.00 3.02
8082 11009 2.143122 GCAAAAGTGTCGTGATCCAGA 58.857 47.619 0.00 0.00 0.00 3.86
8083 11010 1.872952 TGCAAAAGTGTCGTGATCCAG 59.127 47.619 0.00 0.00 0.00 3.86
8084 11011 1.960417 TGCAAAAGTGTCGTGATCCA 58.040 45.000 0.00 0.00 0.00 3.41
8085 11012 3.347958 TTTGCAAAAGTGTCGTGATCC 57.652 42.857 10.02 0.00 0.00 3.36
8086 11013 4.207019 CCTTTTTGCAAAAGTGTCGTGATC 59.793 41.667 22.78 0.00 0.00 2.92
8102 11029 6.572519 TCCAGAAAACAAGATGACCTTTTTG 58.427 36.000 0.00 0.00 31.42 2.44
8103 11030 6.790232 TCCAGAAAACAAGATGACCTTTTT 57.210 33.333 0.00 0.00 31.42 1.94
8110 11037 5.984926 GTGCAATTTCCAGAAAACAAGATGA 59.015 36.000 0.00 0.00 33.56 2.92
8112 11039 5.299949 GGTGCAATTTCCAGAAAACAAGAT 58.700 37.500 0.00 0.00 33.56 2.40
8120 11047 1.963679 GCGGGTGCAATTTCCAGAA 59.036 52.632 0.00 0.00 42.15 3.02
8170 11098 7.775053 AGGGCTTATTTGTAAAACTGAATCA 57.225 32.000 0.00 0.00 0.00 2.57
8204 11132 2.124695 GAGCCGGGCGGAATTCTT 60.125 61.111 14.39 0.00 37.50 2.52
8487 11649 1.412343 GTGGGAAATATTGCCGGCAAT 59.588 47.619 45.70 45.70 45.31 3.56
8489 11651 1.040339 GGTGGGAAATATTGCCGGCA 61.040 55.000 29.03 29.03 45.31 5.69
8628 11790 1.956297 CAACGGTGGAAAGGTGTACA 58.044 50.000 0.00 0.00 0.00 2.90
8757 11919 3.449737 AGCTGCATGGCATCAAGTATTTT 59.550 39.130 1.02 0.00 38.13 1.82
8758 11920 3.028850 AGCTGCATGGCATCAAGTATTT 58.971 40.909 1.02 0.00 38.13 1.40
8831 11993 1.131883 GCAGCAAGCCTTATCACAGTG 59.868 52.381 0.00 0.00 37.23 3.66
8918 12080 2.423577 GTTTTGACACCGATAGCTGGT 58.576 47.619 0.00 0.00 41.47 4.00
8919 12081 1.737793 GGTTTTGACACCGATAGCTGG 59.262 52.381 0.00 0.00 0.00 4.85
8928 12090 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
8929 12091 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
8930 12092 0.250553 AAGATCCGCCGGTTTTGACA 60.251 50.000 1.63 0.00 0.00 3.58
8931 12093 0.168128 CAAGATCCGCCGGTTTTGAC 59.832 55.000 1.63 0.00 0.00 3.18
8932 12094 0.958382 CCAAGATCCGCCGGTTTTGA 60.958 55.000 1.63 0.00 0.00 2.69
8933 12095 1.506262 CCAAGATCCGCCGGTTTTG 59.494 57.895 1.63 6.54 0.00 2.44
8934 12096 1.677633 CCCAAGATCCGCCGGTTTT 60.678 57.895 1.63 0.00 0.00 2.43
8935 12097 1.555477 TACCCAAGATCCGCCGGTTT 61.555 55.000 1.63 0.00 0.00 3.27
8936 12098 1.968050 CTACCCAAGATCCGCCGGTT 61.968 60.000 1.63 0.00 0.00 4.44
8937 12099 2.364579 TACCCAAGATCCGCCGGT 60.365 61.111 1.63 0.00 0.00 5.28
8938 12100 2.421739 CTACCCAAGATCCGCCGG 59.578 66.667 0.00 0.00 0.00 6.13
8939 12101 2.421739 CCTACCCAAGATCCGCCG 59.578 66.667 0.00 0.00 0.00 6.46
8940 12102 2.819284 CCCCTACCCAAGATCCGCC 61.819 68.421 0.00 0.00 0.00 6.13
8941 12103 2.819284 CCCCCTACCCAAGATCCGC 61.819 68.421 0.00 0.00 0.00 5.54
8942 12104 1.384082 ACCCCCTACCCAAGATCCG 60.384 63.158 0.00 0.00 0.00 4.18
8943 12105 1.060743 GGACCCCCTACCCAAGATCC 61.061 65.000 0.00 0.00 0.00 3.36
8944 12106 1.060743 GGGACCCCCTACCCAAGATC 61.061 65.000 0.00 0.00 44.96 2.75
8945 12107 1.005690 GGGACCCCCTACCCAAGAT 59.994 63.158 0.00 0.00 44.96 2.40
8946 12108 2.457794 GGGACCCCCTACCCAAGA 59.542 66.667 0.00 0.00 44.96 3.02
8947 12109 3.087906 CGGGACCCCCTACCCAAG 61.088 72.222 4.46 0.00 45.83 3.61
8948 12110 3.191186 TTCGGGACCCCCTACCCAA 62.191 63.158 4.46 0.00 45.83 4.12
8949 12111 3.613674 TTCGGGACCCCCTACCCA 61.614 66.667 4.46 0.00 45.83 4.51
8950 12112 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
8951 12113 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
8952 12114 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
8953 12115 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
8954 12116 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
8955 12117 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
8957 12119 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
8958 12120 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
8959 12121 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
8960 12122 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
8961 12123 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
8962 12124 1.805945 GCCTAGACGCACAGTTCGG 60.806 63.158 0.00 0.00 0.00 4.30
8963 12125 2.152699 CGCCTAGACGCACAGTTCG 61.153 63.158 0.00 0.00 0.00 3.95
8964 12126 1.805945 CCGCCTAGACGCACAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
8965 12127 1.605058 ATCCGCCTAGACGCACAGTT 61.605 55.000 0.00 0.00 0.00 3.16
8966 12128 2.052690 ATCCGCCTAGACGCACAGT 61.053 57.895 0.00 0.00 0.00 3.55
8967 12129 1.589993 CATCCGCCTAGACGCACAG 60.590 63.158 0.00 0.00 0.00 3.66
8968 12130 2.494445 CATCCGCCTAGACGCACA 59.506 61.111 0.00 0.00 0.00 4.57
8969 12131 2.279517 CCATCCGCCTAGACGCAC 60.280 66.667 0.00 0.00 0.00 5.34
8970 12132 2.758327 ACCATCCGCCTAGACGCA 60.758 61.111 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.