Multiple sequence alignment - TraesCS5B01G045800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G045800 | chr5B | 100.000 | 3480 | 0 | 0 | 1 | 3480 | 51063368 | 51059889 | 0.000000e+00 | 6427.0 |
1 | TraesCS5B01G045800 | chr5B | 95.802 | 1453 | 50 | 3 | 886 | 2331 | 50529911 | 50531359 | 0.000000e+00 | 2335.0 |
2 | TraesCS5B01G045800 | chr5B | 84.165 | 1263 | 172 | 18 | 1054 | 2306 | 48981044 | 48979800 | 0.000000e+00 | 1199.0 |
3 | TraesCS5B01G045800 | chr5B | 83.525 | 1220 | 168 | 18 | 1104 | 2303 | 48931306 | 48930100 | 0.000000e+00 | 1109.0 |
4 | TraesCS5B01G045800 | chr5B | 82.324 | 1239 | 158 | 28 | 1095 | 2311 | 50226679 | 50227878 | 0.000000e+00 | 1018.0 |
5 | TraesCS5B01G045800 | chr5B | 92.455 | 729 | 15 | 8 | 2756 | 3451 | 50531944 | 50532665 | 0.000000e+00 | 1005.0 |
6 | TraesCS5B01G045800 | chr5B | 93.803 | 355 | 14 | 6 | 2405 | 2752 | 50531487 | 50531840 | 8.560000e-146 | 527.0 |
7 | TraesCS5B01G045800 | chr5B | 88.498 | 313 | 30 | 2 | 2191 | 2503 | 50805539 | 50805845 | 1.180000e-99 | 374.0 |
8 | TraesCS5B01G045800 | chr5B | 88.312 | 231 | 25 | 2 | 4 | 234 | 51147740 | 51147512 | 3.420000e-70 | 276.0 |
9 | TraesCS5B01G045800 | chr5B | 86.486 | 148 | 17 | 3 | 2572 | 2716 | 50853295 | 50853442 | 3.600000e-35 | 159.0 |
10 | TraesCS5B01G045800 | chr5B | 92.000 | 100 | 8 | 0 | 2407 | 2506 | 50805486 | 50805387 | 1.300000e-29 | 141.0 |
11 | TraesCS5B01G045800 | chr5B | 90.909 | 99 | 7 | 2 | 303 | 400 | 638930519 | 638930422 | 7.840000e-27 | 132.0 |
12 | TraesCS5B01G045800 | chr5D | 89.571 | 1889 | 127 | 37 | 883 | 2716 | 48315253 | 48313380 | 0.000000e+00 | 2333.0 |
13 | TraesCS5B01G045800 | chr5D | 83.714 | 1271 | 169 | 27 | 1054 | 2306 | 46847654 | 46846404 | 0.000000e+00 | 1166.0 |
14 | TraesCS5B01G045800 | chr5D | 83.266 | 1231 | 152 | 26 | 1095 | 2311 | 47280669 | 47281859 | 0.000000e+00 | 1083.0 |
15 | TraesCS5B01G045800 | chr5D | 83.156 | 1223 | 163 | 29 | 1105 | 2303 | 46732753 | 46731550 | 0.000000e+00 | 1077.0 |
16 | TraesCS5B01G045800 | chr5D | 82.405 | 682 | 58 | 25 | 1871 | 2506 | 48033611 | 48034276 | 3.950000e-149 | 538.0 |
17 | TraesCS5B01G045800 | chr5D | 93.294 | 343 | 23 | 0 | 1536 | 1878 | 48032280 | 48032622 | 1.110000e-139 | 507.0 |
18 | TraesCS5B01G045800 | chr5D | 81.981 | 616 | 70 | 20 | 1913 | 2503 | 47916498 | 47917097 | 5.220000e-133 | 484.0 |
19 | TraesCS5B01G045800 | chr5D | 86.318 | 402 | 42 | 7 | 885 | 1284 | 48021440 | 48021830 | 3.210000e-115 | 425.0 |
20 | TraesCS5B01G045800 | chr5D | 86.726 | 226 | 28 | 2 | 1 | 226 | 48020726 | 48020949 | 2.070000e-62 | 250.0 |
21 | TraesCS5B01G045800 | chr5D | 82.213 | 253 | 21 | 18 | 3026 | 3271 | 48034982 | 48035217 | 2.740000e-46 | 196.0 |
22 | TraesCS5B01G045800 | chr5D | 80.000 | 240 | 25 | 13 | 596 | 812 | 48315491 | 48315252 | 4.650000e-34 | 156.0 |
23 | TraesCS5B01G045800 | chr5D | 94.444 | 90 | 5 | 0 | 302 | 391 | 293405673 | 293405762 | 4.680000e-29 | 139.0 |
24 | TraesCS5B01G045800 | chr5D | 80.412 | 97 | 14 | 3 | 498 | 589 | 366913994 | 366914090 | 6.230000e-08 | 69.4 |
25 | TraesCS5B01G045800 | chr5A | 90.293 | 1329 | 76 | 17 | 1180 | 2471 | 38055694 | 38054382 | 0.000000e+00 | 1690.0 |
26 | TraesCS5B01G045800 | chr5A | 84.444 | 900 | 122 | 11 | 1409 | 2306 | 37780630 | 37779747 | 0.000000e+00 | 870.0 |
27 | TraesCS5B01G045800 | chr5A | 85.586 | 222 | 16 | 12 | 3026 | 3242 | 37997350 | 37997560 | 5.850000e-53 | 219.0 |
28 | TraesCS5B01G045800 | chr5A | 84.076 | 157 | 7 | 13 | 936 | 1081 | 37997061 | 37997210 | 6.060000e-28 | 135.0 |
29 | TraesCS5B01G045800 | chr5A | 82.143 | 112 | 8 | 3 | 600 | 699 | 37996936 | 37997047 | 6.190000e-13 | 86.1 |
30 | TraesCS5B01G045800 | chr5A | 100.000 | 29 | 0 | 0 | 1077 | 1105 | 37997192 | 37997220 | 2.000000e-03 | 54.7 |
31 | TraesCS5B01G045800 | chr4A | 95.556 | 90 | 4 | 0 | 306 | 395 | 488112417 | 488112506 | 1.010000e-30 | 145.0 |
32 | TraesCS5B01G045800 | chr4A | 93.548 | 93 | 6 | 0 | 307 | 399 | 537597921 | 537598013 | 4.680000e-29 | 139.0 |
33 | TraesCS5B01G045800 | chr7D | 95.402 | 87 | 4 | 0 | 307 | 393 | 343752012 | 343751926 | 4.680000e-29 | 139.0 |
34 | TraesCS5B01G045800 | chr1A | 92.632 | 95 | 7 | 0 | 304 | 398 | 115948014 | 115948108 | 1.680000e-28 | 137.0 |
35 | TraesCS5B01G045800 | chr1A | 90.909 | 55 | 5 | 0 | 538 | 592 | 377221553 | 377221499 | 1.340000e-09 | 75.0 |
36 | TraesCS5B01G045800 | chr2A | 94.318 | 88 | 5 | 0 | 304 | 391 | 685469228 | 685469141 | 6.060000e-28 | 135.0 |
37 | TraesCS5B01G045800 | chr7B | 91.000 | 100 | 8 | 1 | 306 | 405 | 199270365 | 199270463 | 2.180000e-27 | 134.0 |
38 | TraesCS5B01G045800 | chr7B | 77.093 | 227 | 31 | 12 | 2586 | 2799 | 13705423 | 13705205 | 1.020000e-20 | 111.0 |
39 | TraesCS5B01G045800 | chr6B | 94.253 | 87 | 5 | 0 | 306 | 392 | 688544516 | 688544430 | 2.180000e-27 | 134.0 |
40 | TraesCS5B01G045800 | chr6B | 75.113 | 221 | 36 | 8 | 386 | 589 | 63401621 | 63401839 | 6.190000e-13 | 86.1 |
41 | TraesCS5B01G045800 | chr3B | 75.122 | 205 | 34 | 16 | 2756 | 2954 | 45154037 | 45153844 | 2.880000e-11 | 80.5 |
42 | TraesCS5B01G045800 | chr1B | 89.655 | 58 | 3 | 2 | 1024 | 1081 | 523237228 | 523237282 | 1.730000e-08 | 71.3 |
43 | TraesCS5B01G045800 | chr1B | 89.091 | 55 | 3 | 1 | 1027 | 1081 | 523230239 | 523230290 | 8.060000e-07 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G045800 | chr5B | 51059889 | 51063368 | 3479 | True | 6427.000000 | 6427 | 100.000000 | 1 | 3480 | 1 | chr5B.!!$R4 | 3479 |
1 | TraesCS5B01G045800 | chr5B | 50529911 | 50532665 | 2754 | False | 1289.000000 | 2335 | 94.020000 | 886 | 3451 | 3 | chr5B.!!$F4 | 2565 |
2 | TraesCS5B01G045800 | chr5B | 48979800 | 48981044 | 1244 | True | 1199.000000 | 1199 | 84.165000 | 1054 | 2306 | 1 | chr5B.!!$R2 | 1252 |
3 | TraesCS5B01G045800 | chr5B | 48930100 | 48931306 | 1206 | True | 1109.000000 | 1109 | 83.525000 | 1104 | 2303 | 1 | chr5B.!!$R1 | 1199 |
4 | TraesCS5B01G045800 | chr5B | 50226679 | 50227878 | 1199 | False | 1018.000000 | 1018 | 82.324000 | 1095 | 2311 | 1 | chr5B.!!$F1 | 1216 |
5 | TraesCS5B01G045800 | chr5D | 48313380 | 48315491 | 2111 | True | 1244.500000 | 2333 | 84.785500 | 596 | 2716 | 2 | chr5D.!!$R3 | 2120 |
6 | TraesCS5B01G045800 | chr5D | 46846404 | 46847654 | 1250 | True | 1166.000000 | 1166 | 83.714000 | 1054 | 2306 | 1 | chr5D.!!$R2 | 1252 |
7 | TraesCS5B01G045800 | chr5D | 47280669 | 47281859 | 1190 | False | 1083.000000 | 1083 | 83.266000 | 1095 | 2311 | 1 | chr5D.!!$F1 | 1216 |
8 | TraesCS5B01G045800 | chr5D | 46731550 | 46732753 | 1203 | True | 1077.000000 | 1077 | 83.156000 | 1105 | 2303 | 1 | chr5D.!!$R1 | 1198 |
9 | TraesCS5B01G045800 | chr5D | 47916498 | 47917097 | 599 | False | 484.000000 | 484 | 81.981000 | 1913 | 2503 | 1 | chr5D.!!$F2 | 590 |
10 | TraesCS5B01G045800 | chr5D | 48032280 | 48035217 | 2937 | False | 413.666667 | 538 | 85.970667 | 1536 | 3271 | 3 | chr5D.!!$F6 | 1735 |
11 | TraesCS5B01G045800 | chr5D | 48020726 | 48021830 | 1104 | False | 337.500000 | 425 | 86.522000 | 1 | 1284 | 2 | chr5D.!!$F5 | 1283 |
12 | TraesCS5B01G045800 | chr5A | 38054382 | 38055694 | 1312 | True | 1690.000000 | 1690 | 90.293000 | 1180 | 2471 | 1 | chr5A.!!$R2 | 1291 |
13 | TraesCS5B01G045800 | chr5A | 37779747 | 37780630 | 883 | True | 870.000000 | 870 | 84.444000 | 1409 | 2306 | 1 | chr5A.!!$R1 | 897 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
170 | 171 | 0.106708 | GACATATGGCGAGGCTCCAA | 59.893 | 55.0 | 9.32 | 0.0 | 37.13 | 3.53 | F |
275 | 276 | 0.173255 | CCATGGCGTGTTTGATTCCC | 59.827 | 55.0 | 0.00 | 0.0 | 0.00 | 3.97 | F |
740 | 789 | 0.462047 | ACGATTCTCCGCATGTTCCC | 60.462 | 55.0 | 0.00 | 0.0 | 0.00 | 3.97 | F |
746 | 795 | 0.811281 | CTCCGCATGTTCCCCTTTTC | 59.189 | 55.0 | 0.00 | 0.0 | 0.00 | 2.29 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1300 | 1390 | 2.031163 | GACCTTGCTGCTGTCCGT | 59.969 | 61.111 | 0.0 | 0.0 | 0.00 | 4.69 | R |
2150 | 3273 | 3.758023 | CCTTGATGTAAATGACACTGGCA | 59.242 | 43.478 | 0.0 | 0.0 | 42.17 | 4.92 | R |
2414 | 3601 | 2.548057 | ACAGCGTCAATTCGACACAAAT | 59.452 | 40.909 | 8.2 | 0.0 | 45.70 | 2.32 | R |
2682 | 3972 | 4.141711 | GCTAGAATCATACCCAGTCACCAA | 60.142 | 45.833 | 0.0 | 0.0 | 0.00 | 3.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 6.018507 | GCCAAGATTCATGCAATTAATCCAAC | 60.019 | 38.462 | 12.73 | 1.70 | 37.59 | 3.77 |
26 | 27 | 6.199531 | CCAAGATTCATGCAATTAATCCAACG | 59.800 | 38.462 | 12.73 | 0.00 | 37.59 | 4.10 |
34 | 35 | 3.181500 | GCAATTAATCCAACGGTCCACTC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
36 | 37 | 1.548081 | TAATCCAACGGTCCACTCGA | 58.452 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
38 | 39 | 1.183030 | ATCCAACGGTCCACTCGACA | 61.183 | 55.000 | 0.00 | 0.00 | 43.95 | 4.35 |
40 | 41 | 0.320421 | CCAACGGTCCACTCGACATT | 60.320 | 55.000 | 0.00 | 0.00 | 43.95 | 2.71 |
41 | 42 | 1.508632 | CAACGGTCCACTCGACATTT | 58.491 | 50.000 | 0.00 | 0.00 | 43.95 | 2.32 |
46 | 47 | 1.079503 | GTCCACTCGACATTTGCTCC | 58.920 | 55.000 | 0.00 | 0.00 | 41.54 | 4.70 |
52 | 53 | 4.549458 | CACTCGACATTTGCTCCAAAATT | 58.451 | 39.130 | 0.00 | 0.00 | 36.90 | 1.82 |
58 | 59 | 5.294734 | ACATTTGCTCCAAAATTGTTCCT | 57.705 | 34.783 | 0.00 | 0.00 | 36.90 | 3.36 |
63 | 64 | 3.826157 | TGCTCCAAAATTGTTCCTACCAG | 59.174 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
120 | 121 | 8.665643 | TGATCTTGATGCAAATTTCTGTTTTT | 57.334 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
121 | 122 | 8.552865 | TGATCTTGATGCAAATTTCTGTTTTTG | 58.447 | 29.630 | 0.00 | 0.00 | 36.21 | 2.44 |
122 | 123 | 8.665643 | ATCTTGATGCAAATTTCTGTTTTTGA | 57.334 | 26.923 | 0.00 | 0.00 | 35.34 | 2.69 |
131 | 132 | 9.213819 | GCAAATTTCTGTTTTTGAGAAATGTTC | 57.786 | 29.630 | 8.17 | 0.00 | 45.35 | 3.18 |
134 | 135 | 7.504922 | TTTCTGTTTTTGAGAAATGTTCGTG | 57.495 | 32.000 | 0.00 | 0.00 | 35.07 | 4.35 |
168 | 169 | 4.683432 | GACATATGGCGAGGCTCC | 57.317 | 61.111 | 9.32 | 1.49 | 0.00 | 4.70 |
170 | 171 | 0.106708 | GACATATGGCGAGGCTCCAA | 59.893 | 55.000 | 9.32 | 0.00 | 37.13 | 3.53 |
213 | 214 | 9.738832 | CAAAATGTGATGATGCTAAATGTATGA | 57.261 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
214 | 215 | 9.740239 | AAAATGTGATGATGCTAAATGTATGAC | 57.260 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
217 | 218 | 6.018832 | TGTGATGATGCTAAATGTATGACACG | 60.019 | 38.462 | 0.00 | 0.00 | 0.00 | 4.49 |
220 | 221 | 4.808895 | TGATGCTAAATGTATGACACGGTC | 59.191 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
226 | 227 | 6.037172 | GCTAAATGTATGACACGGTCAGAATT | 59.963 | 38.462 | 11.50 | 8.44 | 46.04 | 2.17 |
227 | 228 | 6.817765 | AAATGTATGACACGGTCAGAATTT | 57.182 | 33.333 | 11.50 | 12.33 | 46.04 | 1.82 |
228 | 229 | 6.817765 | AATGTATGACACGGTCAGAATTTT | 57.182 | 33.333 | 11.50 | 1.58 | 46.04 | 1.82 |
229 | 230 | 5.605564 | TGTATGACACGGTCAGAATTTTG | 57.394 | 39.130 | 11.50 | 0.00 | 46.04 | 2.44 |
230 | 231 | 4.454161 | TGTATGACACGGTCAGAATTTTGG | 59.546 | 41.667 | 11.50 | 0.00 | 46.04 | 3.28 |
231 | 232 | 1.606668 | TGACACGGTCAGAATTTTGGC | 59.393 | 47.619 | 3.02 | 0.00 | 37.67 | 4.52 |
232 | 233 | 1.606668 | GACACGGTCAGAATTTTGGCA | 59.393 | 47.619 | 2.74 | 0.00 | 32.09 | 4.92 |
233 | 234 | 2.228822 | GACACGGTCAGAATTTTGGCAT | 59.771 | 45.455 | 2.74 | 0.00 | 32.09 | 4.40 |
234 | 235 | 2.627699 | ACACGGTCAGAATTTTGGCATT | 59.372 | 40.909 | 2.74 | 0.00 | 0.00 | 3.56 |
235 | 236 | 2.988493 | CACGGTCAGAATTTTGGCATTG | 59.012 | 45.455 | 2.74 | 0.00 | 0.00 | 2.82 |
236 | 237 | 2.890311 | ACGGTCAGAATTTTGGCATTGA | 59.110 | 40.909 | 2.74 | 0.00 | 0.00 | 2.57 |
237 | 238 | 3.511146 | ACGGTCAGAATTTTGGCATTGAT | 59.489 | 39.130 | 2.74 | 0.00 | 0.00 | 2.57 |
238 | 239 | 4.704540 | ACGGTCAGAATTTTGGCATTGATA | 59.295 | 37.500 | 2.74 | 0.00 | 0.00 | 2.15 |
239 | 240 | 5.360714 | ACGGTCAGAATTTTGGCATTGATAT | 59.639 | 36.000 | 2.74 | 0.00 | 0.00 | 1.63 |
240 | 241 | 5.916883 | CGGTCAGAATTTTGGCATTGATATC | 59.083 | 40.000 | 2.74 | 0.00 | 0.00 | 1.63 |
241 | 242 | 6.459985 | CGGTCAGAATTTTGGCATTGATATCA | 60.460 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
242 | 243 | 7.267128 | GGTCAGAATTTTGGCATTGATATCAA | 58.733 | 34.615 | 20.07 | 20.07 | 40.51 | 2.57 |
243 | 244 | 7.765360 | GGTCAGAATTTTGGCATTGATATCAAA | 59.235 | 33.333 | 21.50 | 4.31 | 39.55 | 2.69 |
244 | 245 | 9.321562 | GTCAGAATTTTGGCATTGATATCAAAT | 57.678 | 29.630 | 21.50 | 6.49 | 39.55 | 2.32 |
245 | 246 | 9.320352 | TCAGAATTTTGGCATTGATATCAAATG | 57.680 | 29.630 | 21.50 | 18.71 | 39.55 | 2.32 |
246 | 247 | 9.320352 | CAGAATTTTGGCATTGATATCAAATGA | 57.680 | 29.630 | 21.50 | 0.00 | 39.55 | 2.57 |
247 | 248 | 9.893634 | AGAATTTTGGCATTGATATCAAATGAA | 57.106 | 25.926 | 21.50 | 9.66 | 39.55 | 2.57 |
250 | 251 | 8.843885 | TTTTGGCATTGATATCAAATGAAACA | 57.156 | 26.923 | 21.50 | 14.98 | 39.55 | 2.83 |
251 | 252 | 9.451002 | TTTTGGCATTGATATCAAATGAAACAT | 57.549 | 25.926 | 21.50 | 0.24 | 39.55 | 2.71 |
252 | 253 | 9.451002 | TTTGGCATTGATATCAAATGAAACATT | 57.549 | 25.926 | 21.50 | 0.00 | 39.55 | 2.71 |
253 | 254 | 9.451002 | TTGGCATTGATATCAAATGAAACATTT | 57.549 | 25.926 | 21.50 | 4.22 | 39.55 | 2.32 |
254 | 255 | 9.100554 | TGGCATTGATATCAAATGAAACATTTC | 57.899 | 29.630 | 21.50 | 0.00 | 39.55 | 2.17 |
255 | 256 | 9.321562 | GGCATTGATATCAAATGAAACATTTCT | 57.678 | 29.630 | 21.50 | 0.00 | 39.55 | 2.52 |
261 | 262 | 9.472361 | GATATCAAATGAAACATTTCTCCATGG | 57.528 | 33.333 | 4.97 | 4.97 | 38.02 | 3.66 |
262 | 263 | 5.481105 | TCAAATGAAACATTTCTCCATGGC | 58.519 | 37.500 | 6.96 | 0.00 | 38.02 | 4.40 |
263 | 264 | 3.788333 | ATGAAACATTTCTCCATGGCG | 57.212 | 42.857 | 6.96 | 0.00 | 38.02 | 5.69 |
264 | 265 | 2.513753 | TGAAACATTTCTCCATGGCGT | 58.486 | 42.857 | 6.96 | 0.00 | 38.02 | 5.68 |
265 | 266 | 2.228582 | TGAAACATTTCTCCATGGCGTG | 59.771 | 45.455 | 6.96 | 0.00 | 38.02 | 5.34 |
266 | 267 | 1.909700 | AACATTTCTCCATGGCGTGT | 58.090 | 45.000 | 6.96 | 0.00 | 0.00 | 4.49 |
267 | 268 | 1.909700 | ACATTTCTCCATGGCGTGTT | 58.090 | 45.000 | 6.96 | 0.00 | 0.00 | 3.32 |
268 | 269 | 2.238521 | ACATTTCTCCATGGCGTGTTT | 58.761 | 42.857 | 6.96 | 0.00 | 0.00 | 2.83 |
269 | 270 | 2.030007 | ACATTTCTCCATGGCGTGTTTG | 60.030 | 45.455 | 6.96 | 2.97 | 0.00 | 2.93 |
270 | 271 | 1.974265 | TTTCTCCATGGCGTGTTTGA | 58.026 | 45.000 | 6.96 | 0.00 | 0.00 | 2.69 |
271 | 272 | 2.198827 | TTCTCCATGGCGTGTTTGAT | 57.801 | 45.000 | 6.96 | 0.00 | 0.00 | 2.57 |
272 | 273 | 2.198827 | TCTCCATGGCGTGTTTGATT | 57.801 | 45.000 | 6.96 | 0.00 | 0.00 | 2.57 |
273 | 274 | 2.083774 | TCTCCATGGCGTGTTTGATTC | 58.916 | 47.619 | 6.96 | 0.00 | 0.00 | 2.52 |
274 | 275 | 1.133025 | CTCCATGGCGTGTTTGATTCC | 59.867 | 52.381 | 6.96 | 0.00 | 0.00 | 3.01 |
275 | 276 | 0.173255 | CCATGGCGTGTTTGATTCCC | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
276 | 277 | 0.887247 | CATGGCGTGTTTGATTCCCA | 59.113 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
277 | 278 | 1.271934 | CATGGCGTGTTTGATTCCCAA | 59.728 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
278 | 279 | 1.626686 | TGGCGTGTTTGATTCCCAAT | 58.373 | 45.000 | 0.00 | 0.00 | 34.23 | 3.16 |
279 | 280 | 1.967066 | TGGCGTGTTTGATTCCCAATT | 59.033 | 42.857 | 0.00 | 0.00 | 34.23 | 2.32 |
280 | 281 | 2.366916 | TGGCGTGTTTGATTCCCAATTT | 59.633 | 40.909 | 0.00 | 0.00 | 34.23 | 1.82 |
287 | 288 | 6.571344 | CGTGTTTGATTCCCAATTTATGTGGA | 60.571 | 38.462 | 0.00 | 0.00 | 38.54 | 4.02 |
289 | 290 | 5.596836 | TTGATTCCCAATTTATGTGGAGC | 57.403 | 39.130 | 0.00 | 0.00 | 38.54 | 4.70 |
298 | 299 | 1.288508 | TTATGTGGAGCAGGCCCCAT | 61.289 | 55.000 | 0.00 | 3.70 | 34.58 | 4.00 |
299 | 300 | 1.288508 | TATGTGGAGCAGGCCCCATT | 61.289 | 55.000 | 0.00 | 0.00 | 34.58 | 3.16 |
306 | 307 | 1.202769 | AGCAGGCCCCATTGCAAAAT | 61.203 | 50.000 | 16.24 | 0.00 | 42.67 | 1.82 |
307 | 308 | 0.540923 | GCAGGCCCCATTGCAAAATA | 59.459 | 50.000 | 1.71 | 0.00 | 40.02 | 1.40 |
308 | 309 | 1.743431 | GCAGGCCCCATTGCAAAATAC | 60.743 | 52.381 | 1.71 | 0.00 | 40.02 | 1.89 |
309 | 310 | 1.832998 | CAGGCCCCATTGCAAAATACT | 59.167 | 47.619 | 1.71 | 0.00 | 0.00 | 2.12 |
310 | 311 | 3.030291 | CAGGCCCCATTGCAAAATACTA | 58.970 | 45.455 | 1.71 | 0.00 | 0.00 | 1.82 |
311 | 312 | 3.031013 | AGGCCCCATTGCAAAATACTAC | 58.969 | 45.455 | 1.71 | 0.00 | 0.00 | 2.73 |
312 | 313 | 2.102420 | GGCCCCATTGCAAAATACTACC | 59.898 | 50.000 | 1.71 | 0.00 | 0.00 | 3.18 |
313 | 314 | 3.031013 | GCCCCATTGCAAAATACTACCT | 58.969 | 45.455 | 1.71 | 0.00 | 0.00 | 3.08 |
314 | 315 | 3.068165 | GCCCCATTGCAAAATACTACCTC | 59.932 | 47.826 | 1.71 | 0.00 | 0.00 | 3.85 |
315 | 316 | 3.636764 | CCCCATTGCAAAATACTACCTCC | 59.363 | 47.826 | 1.71 | 0.00 | 0.00 | 4.30 |
316 | 317 | 4.277476 | CCCATTGCAAAATACTACCTCCA | 58.723 | 43.478 | 1.71 | 0.00 | 0.00 | 3.86 |
317 | 318 | 4.895297 | CCCATTGCAAAATACTACCTCCAT | 59.105 | 41.667 | 1.71 | 0.00 | 0.00 | 3.41 |
318 | 319 | 6.068010 | CCCATTGCAAAATACTACCTCCATA | 58.932 | 40.000 | 1.71 | 0.00 | 0.00 | 2.74 |
319 | 320 | 6.549364 | CCCATTGCAAAATACTACCTCCATAA | 59.451 | 38.462 | 1.71 | 0.00 | 0.00 | 1.90 |
320 | 321 | 7.069331 | CCCATTGCAAAATACTACCTCCATAAA | 59.931 | 37.037 | 1.71 | 0.00 | 0.00 | 1.40 |
321 | 322 | 7.920682 | CCATTGCAAAATACTACCTCCATAAAC | 59.079 | 37.037 | 1.71 | 0.00 | 0.00 | 2.01 |
322 | 323 | 8.686334 | CATTGCAAAATACTACCTCCATAAACT | 58.314 | 33.333 | 1.71 | 0.00 | 0.00 | 2.66 |
323 | 324 | 9.914834 | ATTGCAAAATACTACCTCCATAAACTA | 57.085 | 29.630 | 1.71 | 0.00 | 0.00 | 2.24 |
324 | 325 | 9.742144 | TTGCAAAATACTACCTCCATAAACTAA | 57.258 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
325 | 326 | 9.914834 | TGCAAAATACTACCTCCATAAACTAAT | 57.085 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
406 | 407 | 9.545105 | CAGAGAGAGTAGAATGCAATAGAAAAT | 57.455 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
426 | 427 | 8.084073 | AGAAAATTATCACATTTATGCCCATCG | 58.916 | 33.333 | 0.00 | 0.00 | 0.00 | 3.84 |
428 | 429 | 7.994425 | AATTATCACATTTATGCCCATCGTA | 57.006 | 32.000 | 0.00 | 0.00 | 0.00 | 3.43 |
443 | 444 | 3.373748 | CCATCGTACATTGCTTGTGCTAA | 59.626 | 43.478 | 3.49 | 0.00 | 38.66 | 3.09 |
448 | 449 | 5.023920 | CGTACATTGCTTGTGCTAATTGAG | 58.976 | 41.667 | 3.49 | 0.00 | 38.66 | 3.02 |
457 | 458 | 5.122869 | GCTTGTGCTAATTGAGTGAGATTCA | 59.877 | 40.000 | 0.00 | 0.00 | 36.03 | 2.57 |
459 | 460 | 9.911857 | GCTTGTGCTAATTGAGTGAGATTCACG | 62.912 | 44.444 | 3.77 | 0.00 | 43.13 | 4.35 |
490 | 491 | 8.925161 | TTTTATTGCATAGGTTGTTTAGCATC | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
491 | 492 | 7.637631 | TTATTGCATAGGTTGTTTAGCATCA | 57.362 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
493 | 494 | 3.947196 | TGCATAGGTTGTTTAGCATCAGG | 59.053 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
499 | 500 | 0.676466 | TGTTTAGCATCAGGGCACGG | 60.676 | 55.000 | 0.00 | 0.00 | 35.83 | 4.94 |
508 | 520 | 2.035626 | AGGGCACGGTTCCCATTG | 59.964 | 61.111 | 18.25 | 0.00 | 46.36 | 2.82 |
514 | 526 | 1.871822 | GCACGGTTCCCATTGTTTTGG | 60.872 | 52.381 | 0.00 | 0.00 | 36.46 | 3.28 |
515 | 527 | 1.683917 | CACGGTTCCCATTGTTTTGGA | 59.316 | 47.619 | 0.00 | 0.00 | 39.25 | 3.53 |
516 | 528 | 2.298729 | CACGGTTCCCATTGTTTTGGAT | 59.701 | 45.455 | 0.00 | 0.00 | 39.25 | 3.41 |
519 | 531 | 5.358442 | CACGGTTCCCATTGTTTTGGATATA | 59.642 | 40.000 | 0.00 | 0.00 | 39.25 | 0.86 |
520 | 532 | 5.952947 | ACGGTTCCCATTGTTTTGGATATAA | 59.047 | 36.000 | 0.00 | 0.00 | 39.25 | 0.98 |
521 | 533 | 6.127563 | ACGGTTCCCATTGTTTTGGATATAAC | 60.128 | 38.462 | 0.00 | 0.00 | 39.25 | 1.89 |
522 | 534 | 6.127591 | CGGTTCCCATTGTTTTGGATATAACA | 60.128 | 38.462 | 0.00 | 0.00 | 39.25 | 2.41 |
525 | 537 | 8.962679 | GTTCCCATTGTTTTGGATATAACACTA | 58.037 | 33.333 | 0.00 | 0.00 | 39.25 | 2.74 |
526 | 538 | 8.746052 | TCCCATTGTTTTGGATATAACACTAG | 57.254 | 34.615 | 0.00 | 0.00 | 39.25 | 2.57 |
527 | 539 | 8.333235 | TCCCATTGTTTTGGATATAACACTAGT | 58.667 | 33.333 | 0.00 | 0.00 | 39.25 | 2.57 |
529 | 541 | 9.396022 | CCATTGTTTTGGATATAACACTAGTCT | 57.604 | 33.333 | 0.00 | 0.00 | 39.25 | 3.24 |
568 | 580 | 4.209080 | GTCAAAAGCCGAAACTCAATTTGG | 59.791 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
588 | 600 | 1.994779 | GCAATGCTATTTGGCACACAC | 59.005 | 47.619 | 0.00 | 0.00 | 45.36 | 3.82 |
589 | 601 | 2.609350 | CAATGCTATTTGGCACACACC | 58.391 | 47.619 | 0.00 | 0.00 | 45.36 | 4.16 |
590 | 602 | 1.921982 | ATGCTATTTGGCACACACCA | 58.078 | 45.000 | 0.00 | 0.00 | 45.36 | 4.17 |
594 | 626 | 3.380954 | TGCTATTTGGCACACACCATATG | 59.619 | 43.478 | 0.00 | 0.00 | 40.13 | 1.78 |
694 | 737 | 1.065199 | ACCCATGCCTATGTGACACTG | 60.065 | 52.381 | 7.20 | 0.00 | 32.21 | 3.66 |
700 | 743 | 2.015588 | GCCTATGTGACACTGCTGCAT | 61.016 | 52.381 | 1.31 | 0.00 | 0.00 | 3.96 |
701 | 744 | 1.669265 | CCTATGTGACACTGCTGCATG | 59.331 | 52.381 | 1.31 | 6.66 | 0.00 | 4.06 |
702 | 745 | 2.624636 | CTATGTGACACTGCTGCATGA | 58.375 | 47.619 | 1.31 | 0.00 | 0.00 | 3.07 |
703 | 746 | 2.124277 | ATGTGACACTGCTGCATGAT | 57.876 | 45.000 | 1.31 | 0.00 | 0.00 | 2.45 |
704 | 747 | 1.161843 | TGTGACACTGCTGCATGATG | 58.838 | 50.000 | 1.31 | 4.96 | 0.00 | 3.07 |
705 | 748 | 1.270947 | TGTGACACTGCTGCATGATGA | 60.271 | 47.619 | 1.31 | 0.00 | 0.00 | 2.92 |
720 | 769 | 1.002134 | ATGACGGGCCCACAAGAAG | 60.002 | 57.895 | 24.92 | 5.71 | 0.00 | 2.85 |
730 | 779 | 2.622436 | CCCACAAGAAGACGATTCTCC | 58.378 | 52.381 | 7.85 | 0.00 | 0.00 | 3.71 |
740 | 789 | 0.462047 | ACGATTCTCCGCATGTTCCC | 60.462 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
746 | 795 | 0.811281 | CTCCGCATGTTCCCCTTTTC | 59.189 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
757 | 806 | 5.313712 | TGTTCCCCTTTTCTATTGACAGTC | 58.686 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
761 | 810 | 6.369629 | TCCCCTTTTCTATTGACAGTCAAAA | 58.630 | 36.000 | 19.92 | 7.39 | 40.12 | 2.44 |
762 | 811 | 7.010160 | TCCCCTTTTCTATTGACAGTCAAAAT | 58.990 | 34.615 | 19.92 | 7.32 | 40.12 | 1.82 |
777 | 835 | 7.138736 | ACAGTCAAAATATCTTCACAAAACCG | 58.861 | 34.615 | 0.00 | 0.00 | 0.00 | 4.44 |
786 | 844 | 3.882888 | TCTTCACAAAACCGCTCTGAAAT | 59.117 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
800 | 863 | 6.146184 | CCGCTCTGAAATTATATGTACCACAG | 59.854 | 42.308 | 0.00 | 0.00 | 0.00 | 3.66 |
813 | 876 | 6.726490 | ATGTACCACAGTTCCGATATTACT | 57.274 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
814 | 877 | 6.140303 | TGTACCACAGTTCCGATATTACTC | 57.860 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
815 | 878 | 5.889853 | TGTACCACAGTTCCGATATTACTCT | 59.110 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
816 | 879 | 5.517322 | ACCACAGTTCCGATATTACTCTC | 57.483 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
817 | 880 | 5.202004 | ACCACAGTTCCGATATTACTCTCT | 58.798 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
818 | 881 | 5.299782 | ACCACAGTTCCGATATTACTCTCTC | 59.700 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
819 | 882 | 5.278561 | CCACAGTTCCGATATTACTCTCTCC | 60.279 | 48.000 | 0.00 | 0.00 | 0.00 | 3.71 |
820 | 883 | 4.515944 | ACAGTTCCGATATTACTCTCTCCG | 59.484 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
821 | 884 | 4.515944 | CAGTTCCGATATTACTCTCTCCGT | 59.484 | 45.833 | 0.00 | 0.00 | 0.00 | 4.69 |
822 | 885 | 5.008811 | CAGTTCCGATATTACTCTCTCCGTT | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 4.44 |
823 | 886 | 5.239087 | AGTTCCGATATTACTCTCTCCGTTC | 59.761 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
824 | 887 | 4.070716 | TCCGATATTACTCTCTCCGTTCC | 58.929 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
825 | 888 | 3.120269 | CCGATATTACTCTCTCCGTTCCG | 60.120 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
826 | 889 | 3.744942 | CGATATTACTCTCTCCGTTCCGA | 59.255 | 47.826 | 0.00 | 0.00 | 0.00 | 4.55 |
827 | 890 | 4.212847 | CGATATTACTCTCTCCGTTCCGAA | 59.787 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
828 | 891 | 5.106634 | CGATATTACTCTCTCCGTTCCGAAT | 60.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.34 |
829 | 892 | 6.568081 | CGATATTACTCTCTCCGTTCCGAATT | 60.568 | 42.308 | 0.00 | 0.00 | 0.00 | 2.17 |
830 | 893 | 7.360691 | CGATATTACTCTCTCCGTTCCGAATTA | 60.361 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
831 | 894 | 3.779271 | ACTCTCTCCGTTCCGAATTAC | 57.221 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
832 | 895 | 3.354467 | ACTCTCTCCGTTCCGAATTACT | 58.646 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
833 | 896 | 4.521146 | ACTCTCTCCGTTCCGAATTACTA | 58.479 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
834 | 897 | 4.335037 | ACTCTCTCCGTTCCGAATTACTAC | 59.665 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
835 | 898 | 4.521146 | TCTCTCCGTTCCGAATTACTACT | 58.479 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
836 | 899 | 4.946157 | TCTCTCCGTTCCGAATTACTACTT | 59.054 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
837 | 900 | 6.115446 | TCTCTCCGTTCCGAATTACTACTTA | 58.885 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
838 | 901 | 6.769822 | TCTCTCCGTTCCGAATTACTACTTAT | 59.230 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
839 | 902 | 6.963796 | TCTCCGTTCCGAATTACTACTTATC | 58.036 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
840 | 903 | 6.769822 | TCTCCGTTCCGAATTACTACTTATCT | 59.230 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
841 | 904 | 7.284034 | TCTCCGTTCCGAATTACTACTTATCTT | 59.716 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
842 | 905 | 7.198390 | TCCGTTCCGAATTACTACTTATCTTG | 58.802 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
843 | 906 | 7.067372 | TCCGTTCCGAATTACTACTTATCTTGA | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
844 | 907 | 7.703621 | CCGTTCCGAATTACTACTTATCTTGAA | 59.296 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
845 | 908 | 9.245962 | CGTTCCGAATTACTACTTATCTTGAAT | 57.754 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
871 | 934 | 8.762481 | TTGTCTAGATACATATGTACCACAGT | 57.238 | 34.615 | 17.69 | 0.83 | 32.72 | 3.55 |
872 | 935 | 8.392372 | TGTCTAGATACATATGTACCACAGTC | 57.608 | 38.462 | 17.69 | 10.23 | 32.72 | 3.51 |
873 | 936 | 8.218488 | TGTCTAGATACATATGTACCACAGTCT | 58.782 | 37.037 | 17.69 | 16.26 | 32.72 | 3.24 |
874 | 937 | 9.722184 | GTCTAGATACATATGTACCACAGTCTA | 57.278 | 37.037 | 17.69 | 16.48 | 32.72 | 2.59 |
878 | 941 | 9.588096 | AGATACATATGTACCACAGTCTATTGA | 57.412 | 33.333 | 17.69 | 0.00 | 32.72 | 2.57 |
879 | 942 | 9.627395 | GATACATATGTACCACAGTCTATTGAC | 57.373 | 37.037 | 17.69 | 0.00 | 37.10 | 3.18 |
880 | 943 | 7.418337 | ACATATGTACCACAGTCTATTGACA | 57.582 | 36.000 | 6.56 | 0.00 | 45.20 | 3.58 |
881 | 944 | 7.492524 | ACATATGTACCACAGTCTATTGACAG | 58.507 | 38.462 | 6.56 | 4.19 | 45.20 | 3.51 |
882 | 945 | 7.124298 | ACATATGTACCACAGTCTATTGACAGT | 59.876 | 37.037 | 6.56 | 4.84 | 45.20 | 3.55 |
883 | 946 | 8.630037 | CATATGTACCACAGTCTATTGACAGTA | 58.370 | 37.037 | 9.96 | 3.44 | 45.20 | 2.74 |
884 | 947 | 6.510879 | TGTACCACAGTCTATTGACAGTAG | 57.489 | 41.667 | 9.96 | 3.69 | 45.20 | 2.57 |
969 | 1032 | 1.227853 | GGGAAGACTGCACACCGTT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
970 | 1033 | 1.228657 | GGGAAGACTGCACACCGTTC | 61.229 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
982 | 1053 | 1.068127 | ACACCGTTCACAGGACTACAC | 59.932 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
1010 | 1081 | 2.315176 | CCAAACATCCACCACTCCAAA | 58.685 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
1751 | 1856 | 3.119096 | GGAGACGGTTGCCTTCGC | 61.119 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
2150 | 3273 | 1.228003 | AGATCGCCGTCCTCTCGAT | 60.228 | 57.895 | 0.00 | 0.00 | 44.44 | 3.59 |
2324 | 3456 | 1.071471 | GGCAGCGGCAGGTATGTAT | 59.929 | 57.895 | 11.88 | 0.00 | 43.71 | 2.29 |
2341 | 3489 | 5.568620 | ATGTATTCACCTACCAATCTCCC | 57.431 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2345 | 3495 | 3.042059 | TCACCTACCAATCTCCCTACC | 57.958 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2411 | 3598 | 8.038944 | AGAAGATTTTGAATTGTTCATGGATGG | 58.961 | 33.333 | 0.00 | 0.00 | 39.84 | 3.51 |
2414 | 3601 | 9.204337 | AGATTTTGAATTGTTCATGGATGGATA | 57.796 | 29.630 | 0.00 | 0.00 | 39.84 | 2.59 |
2682 | 3972 | 9.522804 | GATGATCTGTTTAGTTTCGTCTAGAAT | 57.477 | 33.333 | 0.00 | 0.00 | 38.86 | 2.40 |
2737 | 4028 | 7.630513 | GCTTATGCATCTCTAGGTCTATTCTCC | 60.631 | 44.444 | 0.19 | 0.00 | 39.41 | 3.71 |
2753 | 4044 | 9.988815 | GTCTATTCTCCAATCTAATGCTTCTTA | 57.011 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2799 | 4191 | 4.334759 | GTCATCCATTCACATTGTCAGGAG | 59.665 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
2800 | 4192 | 3.354948 | TCCATTCACATTGTCAGGAGG | 57.645 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
2801 | 4193 | 2.912295 | TCCATTCACATTGTCAGGAGGA | 59.088 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
2860 | 4253 | 8.044060 | TGATCGCTCTTGTCTTTTTATGAAAT | 57.956 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
2974 | 4497 | 9.143155 | AGTAAACATAACTGACTTCCCATTTTT | 57.857 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
3009 | 4532 | 0.304098 | TGTGGTTACGCGGTTTTTCG | 59.696 | 50.000 | 12.47 | 0.00 | 0.00 | 3.46 |
3023 | 4546 | 4.149747 | CGGTTTTTCGATTTTCCACATTGG | 59.850 | 41.667 | 0.00 | 0.00 | 39.43 | 3.16 |
3066 | 4589 | 4.809426 | GGTAGTCAAACGTCCCTGATATTG | 59.191 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
3264 | 4791 | 5.457140 | CGCTCAGATTAGGAGATTCAGTAC | 58.543 | 45.833 | 0.00 | 0.00 | 34.24 | 2.73 |
3313 | 4841 | 2.550606 | CTGGCGGCAGTTTGTTAAAGTA | 59.449 | 45.455 | 29.42 | 0.00 | 0.00 | 2.24 |
3337 | 4865 | 6.083487 | TCATTTTGGAGGAAATCTGGAGAT | 57.917 | 37.500 | 0.00 | 0.00 | 36.07 | 2.75 |
3451 | 4995 | 6.264518 | AGACATGATTAAATCAGCATGCATGA | 59.735 | 34.615 | 30.64 | 19.63 | 43.53 | 3.07 |
3452 | 4996 | 6.993079 | ACATGATTAAATCAGCATGCATGAT | 58.007 | 32.000 | 30.64 | 22.50 | 43.53 | 2.45 |
3453 | 4997 | 7.441836 | ACATGATTAAATCAGCATGCATGATT | 58.558 | 30.769 | 30.64 | 26.27 | 46.69 | 2.57 |
3454 | 4998 | 8.581578 | ACATGATTAAATCAGCATGCATGATTA | 58.418 | 29.630 | 29.28 | 16.57 | 44.57 | 1.75 |
3455 | 4999 | 9.418045 | CATGATTAAATCAGCATGCATGATTAA | 57.582 | 29.630 | 29.28 | 24.25 | 44.57 | 1.40 |
3456 | 5000 | 9.990360 | ATGATTAAATCAGCATGCATGATTAAA | 57.010 | 25.926 | 29.28 | 22.20 | 44.57 | 1.52 |
3457 | 5001 | 9.471084 | TGATTAAATCAGCATGCATGATTAAAG | 57.529 | 29.630 | 29.28 | 12.19 | 44.57 | 1.85 |
3458 | 5002 | 9.687210 | GATTAAATCAGCATGCATGATTAAAGA | 57.313 | 29.630 | 29.28 | 17.29 | 44.57 | 2.52 |
3460 | 5004 | 9.872721 | TTAAATCAGCATGCATGATTAAAGAAA | 57.127 | 25.926 | 29.28 | 20.33 | 44.57 | 2.52 |
3461 | 5005 | 8.780846 | AAATCAGCATGCATGATTAAAGAAAA | 57.219 | 26.923 | 29.28 | 2.08 | 44.57 | 2.29 |
3462 | 5006 | 8.780846 | AATCAGCATGCATGATTAAAGAAAAA | 57.219 | 26.923 | 30.64 | 1.04 | 43.75 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
15 | 16 | 2.498481 | TCGAGTGGACCGTTGGATTAAT | 59.502 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
25 | 26 | 0.670546 | AGCAAATGTCGAGTGGACCG | 60.671 | 55.000 | 2.56 | 0.00 | 45.46 | 4.79 |
26 | 27 | 1.079503 | GAGCAAATGTCGAGTGGACC | 58.920 | 55.000 | 2.56 | 0.00 | 45.46 | 4.46 |
34 | 35 | 4.150451 | GGAACAATTTTGGAGCAAATGTCG | 59.850 | 41.667 | 0.00 | 0.00 | 33.19 | 4.35 |
36 | 37 | 5.294734 | AGGAACAATTTTGGAGCAAATGT | 57.705 | 34.783 | 0.00 | 0.00 | 33.19 | 2.71 |
38 | 39 | 5.306678 | TGGTAGGAACAATTTTGGAGCAAAT | 59.693 | 36.000 | 0.00 | 0.00 | 33.19 | 2.32 |
40 | 41 | 4.219115 | TGGTAGGAACAATTTTGGAGCAA | 58.781 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
41 | 42 | 3.826157 | CTGGTAGGAACAATTTTGGAGCA | 59.174 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
46 | 47 | 6.158598 | CCAATGTCTGGTAGGAACAATTTTG | 58.841 | 40.000 | 0.00 | 0.00 | 40.78 | 2.44 |
101 | 102 | 8.489990 | TTTCTCAAAAACAGAAATTTGCATCA | 57.510 | 26.923 | 0.00 | 0.00 | 35.40 | 3.07 |
103 | 104 | 8.895737 | ACATTTCTCAAAAACAGAAATTTGCAT | 58.104 | 25.926 | 0.00 | 0.00 | 44.67 | 3.96 |
110 | 111 | 7.061673 | CACACGAACATTTCTCAAAAACAGAAA | 59.938 | 33.333 | 0.00 | 0.00 | 42.63 | 2.52 |
114 | 115 | 4.560819 | GCACACGAACATTTCTCAAAAACA | 59.439 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
120 | 121 | 2.286950 | GCTTGCACACGAACATTTCTCA | 60.287 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
121 | 122 | 2.286950 | TGCTTGCACACGAACATTTCTC | 60.287 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
122 | 123 | 1.675483 | TGCTTGCACACGAACATTTCT | 59.325 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
131 | 132 | 2.177531 | GCTCCATGCTTGCACACG | 59.822 | 61.111 | 0.00 | 0.00 | 38.95 | 4.49 |
189 | 190 | 8.905850 | TGTCATACATTTAGCATCATCACATTT | 58.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
213 | 214 | 1.686355 | TGCCAAAATTCTGACCGTGT | 58.314 | 45.000 | 0.00 | 0.00 | 0.00 | 4.49 |
214 | 215 | 2.988493 | CAATGCCAAAATTCTGACCGTG | 59.012 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
217 | 218 | 6.808829 | TGATATCAATGCCAAAATTCTGACC | 58.191 | 36.000 | 1.98 | 0.00 | 0.00 | 4.02 |
220 | 221 | 9.320352 | TCATTTGATATCAATGCCAAAATTCTG | 57.680 | 29.630 | 18.61 | 0.00 | 35.55 | 3.02 |
226 | 227 | 9.451002 | AATGTTTCATTTGATATCAATGCCAAA | 57.549 | 25.926 | 18.61 | 12.01 | 35.55 | 3.28 |
227 | 228 | 9.451002 | AAATGTTTCATTTGATATCAATGCCAA | 57.549 | 25.926 | 18.61 | 4.17 | 35.55 | 4.52 |
228 | 229 | 9.100554 | GAAATGTTTCATTTGATATCAATGCCA | 57.899 | 29.630 | 18.61 | 14.12 | 37.15 | 4.92 |
229 | 230 | 9.321562 | AGAAATGTTTCATTTGATATCAATGCC | 57.678 | 29.630 | 18.61 | 10.26 | 39.61 | 4.40 |
235 | 236 | 9.472361 | CCATGGAGAAATGTTTCATTTGATATC | 57.528 | 33.333 | 5.56 | 0.00 | 39.61 | 1.63 |
236 | 237 | 7.929785 | GCCATGGAGAAATGTTTCATTTGATAT | 59.070 | 33.333 | 18.40 | 0.83 | 39.61 | 1.63 |
237 | 238 | 7.267128 | GCCATGGAGAAATGTTTCATTTGATA | 58.733 | 34.615 | 18.40 | 0.00 | 39.61 | 2.15 |
238 | 239 | 6.110707 | GCCATGGAGAAATGTTTCATTTGAT | 58.889 | 36.000 | 18.40 | 1.96 | 39.61 | 2.57 |
239 | 240 | 5.481105 | GCCATGGAGAAATGTTTCATTTGA | 58.519 | 37.500 | 18.40 | 0.00 | 39.61 | 2.69 |
240 | 241 | 4.327898 | CGCCATGGAGAAATGTTTCATTTG | 59.672 | 41.667 | 18.40 | 0.00 | 39.61 | 2.32 |
241 | 242 | 4.021192 | ACGCCATGGAGAAATGTTTCATTT | 60.021 | 37.500 | 23.45 | 7.32 | 39.61 | 2.32 |
242 | 243 | 3.511146 | ACGCCATGGAGAAATGTTTCATT | 59.489 | 39.130 | 23.45 | 0.00 | 39.61 | 2.57 |
243 | 244 | 3.091545 | ACGCCATGGAGAAATGTTTCAT | 58.908 | 40.909 | 23.45 | 0.00 | 39.61 | 2.57 |
244 | 245 | 2.228582 | CACGCCATGGAGAAATGTTTCA | 59.771 | 45.455 | 23.45 | 0.00 | 39.61 | 2.69 |
245 | 246 | 2.228822 | ACACGCCATGGAGAAATGTTTC | 59.771 | 45.455 | 23.45 | 0.00 | 37.45 | 2.78 |
246 | 247 | 2.238521 | ACACGCCATGGAGAAATGTTT | 58.761 | 42.857 | 23.45 | 0.00 | 0.00 | 2.83 |
247 | 248 | 1.909700 | ACACGCCATGGAGAAATGTT | 58.090 | 45.000 | 23.45 | 0.00 | 0.00 | 2.71 |
248 | 249 | 1.909700 | AACACGCCATGGAGAAATGT | 58.090 | 45.000 | 23.45 | 13.20 | 0.00 | 2.71 |
249 | 250 | 2.228582 | TCAAACACGCCATGGAGAAATG | 59.771 | 45.455 | 23.45 | 12.51 | 0.00 | 2.32 |
250 | 251 | 2.513753 | TCAAACACGCCATGGAGAAAT | 58.486 | 42.857 | 23.45 | 3.77 | 0.00 | 2.17 |
251 | 252 | 1.974265 | TCAAACACGCCATGGAGAAA | 58.026 | 45.000 | 23.45 | 0.00 | 0.00 | 2.52 |
252 | 253 | 2.198827 | ATCAAACACGCCATGGAGAA | 57.801 | 45.000 | 23.45 | 0.60 | 0.00 | 2.87 |
253 | 254 | 2.083774 | GAATCAAACACGCCATGGAGA | 58.916 | 47.619 | 23.45 | 0.00 | 0.00 | 3.71 |
254 | 255 | 1.133025 | GGAATCAAACACGCCATGGAG | 59.867 | 52.381 | 18.40 | 16.40 | 0.00 | 3.86 |
255 | 256 | 1.173043 | GGAATCAAACACGCCATGGA | 58.827 | 50.000 | 18.40 | 0.00 | 0.00 | 3.41 |
256 | 257 | 0.173255 | GGGAATCAAACACGCCATGG | 59.827 | 55.000 | 7.63 | 7.63 | 0.00 | 3.66 |
257 | 258 | 0.887247 | TGGGAATCAAACACGCCATG | 59.113 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
258 | 259 | 1.626686 | TTGGGAATCAAACACGCCAT | 58.373 | 45.000 | 0.00 | 0.00 | 31.46 | 4.40 |
259 | 260 | 1.626686 | ATTGGGAATCAAACACGCCA | 58.373 | 45.000 | 0.00 | 0.00 | 39.05 | 5.69 |
260 | 261 | 2.741759 | AATTGGGAATCAAACACGCC | 57.258 | 45.000 | 0.00 | 0.00 | 39.05 | 5.68 |
261 | 262 | 5.062058 | CACATAAATTGGGAATCAAACACGC | 59.938 | 40.000 | 0.00 | 0.00 | 39.05 | 5.34 |
262 | 263 | 5.576384 | CCACATAAATTGGGAATCAAACACG | 59.424 | 40.000 | 0.00 | 0.00 | 39.05 | 4.49 |
263 | 264 | 6.696411 | TCCACATAAATTGGGAATCAAACAC | 58.304 | 36.000 | 0.00 | 0.00 | 39.05 | 3.32 |
264 | 265 | 6.574073 | GCTCCACATAAATTGGGAATCAAACA | 60.574 | 38.462 | 0.00 | 0.00 | 39.05 | 2.83 |
265 | 266 | 5.812127 | GCTCCACATAAATTGGGAATCAAAC | 59.188 | 40.000 | 0.00 | 0.00 | 39.05 | 2.93 |
266 | 267 | 5.483231 | TGCTCCACATAAATTGGGAATCAAA | 59.517 | 36.000 | 0.00 | 0.00 | 39.05 | 2.69 |
267 | 268 | 5.022122 | TGCTCCACATAAATTGGGAATCAA | 58.978 | 37.500 | 0.00 | 0.00 | 40.01 | 2.57 |
268 | 269 | 4.608269 | TGCTCCACATAAATTGGGAATCA | 58.392 | 39.130 | 0.00 | 0.00 | 34.56 | 2.57 |
269 | 270 | 4.038402 | CCTGCTCCACATAAATTGGGAATC | 59.962 | 45.833 | 0.00 | 0.00 | 34.56 | 2.52 |
270 | 271 | 3.962718 | CCTGCTCCACATAAATTGGGAAT | 59.037 | 43.478 | 0.00 | 0.00 | 34.56 | 3.01 |
271 | 272 | 3.364549 | CCTGCTCCACATAAATTGGGAA | 58.635 | 45.455 | 0.00 | 0.00 | 34.56 | 3.97 |
272 | 273 | 2.949963 | GCCTGCTCCACATAAATTGGGA | 60.950 | 50.000 | 0.00 | 0.00 | 34.56 | 4.37 |
273 | 274 | 1.410153 | GCCTGCTCCACATAAATTGGG | 59.590 | 52.381 | 0.00 | 0.00 | 34.56 | 4.12 |
274 | 275 | 1.410153 | GGCCTGCTCCACATAAATTGG | 59.590 | 52.381 | 0.00 | 0.00 | 35.18 | 3.16 |
275 | 276 | 1.410153 | GGGCCTGCTCCACATAAATTG | 59.590 | 52.381 | 0.84 | 0.00 | 0.00 | 2.32 |
276 | 277 | 1.689258 | GGGGCCTGCTCCACATAAATT | 60.689 | 52.381 | 0.84 | 0.00 | 36.36 | 1.82 |
277 | 278 | 0.106015 | GGGGCCTGCTCCACATAAAT | 60.106 | 55.000 | 0.84 | 0.00 | 36.36 | 1.40 |
278 | 279 | 1.306296 | GGGGCCTGCTCCACATAAA | 59.694 | 57.895 | 0.84 | 0.00 | 36.36 | 1.40 |
279 | 280 | 1.928046 | TGGGGCCTGCTCCACATAA | 60.928 | 57.895 | 6.65 | 0.00 | 42.59 | 1.90 |
280 | 281 | 2.286045 | TGGGGCCTGCTCCACATA | 60.286 | 61.111 | 6.65 | 0.00 | 42.59 | 2.29 |
287 | 288 | 1.202769 | ATTTTGCAATGGGGCCTGCT | 61.203 | 50.000 | 16.14 | 0.00 | 39.38 | 4.24 |
289 | 290 | 1.832998 | AGTATTTTGCAATGGGGCCTG | 59.167 | 47.619 | 0.84 | 0.00 | 0.00 | 4.85 |
298 | 299 | 9.742144 | TTAGTTTATGGAGGTAGTATTTTGCAA | 57.258 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
299 | 300 | 9.914834 | ATTAGTTTATGGAGGTAGTATTTTGCA | 57.085 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
371 | 372 | 8.972127 | TGCATTCTACTCTCTCTGTAAACTAAT | 58.028 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
372 | 373 | 8.349568 | TGCATTCTACTCTCTCTGTAAACTAA | 57.650 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
373 | 374 | 7.939784 | TGCATTCTACTCTCTCTGTAAACTA | 57.060 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
374 | 375 | 6.842437 | TGCATTCTACTCTCTCTGTAAACT | 57.158 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
375 | 376 | 9.243637 | CTATTGCATTCTACTCTCTCTGTAAAC | 57.756 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
376 | 377 | 9.190317 | TCTATTGCATTCTACTCTCTCTGTAAA | 57.810 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
377 | 378 | 8.753497 | TCTATTGCATTCTACTCTCTCTGTAA | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
378 | 379 | 8.753497 | TTCTATTGCATTCTACTCTCTCTGTA | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
379 | 380 | 7.652524 | TTCTATTGCATTCTACTCTCTCTGT | 57.347 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
380 | 381 | 8.939201 | TTTTCTATTGCATTCTACTCTCTCTG | 57.061 | 34.615 | 0.00 | 0.00 | 0.00 | 3.35 |
406 | 407 | 6.292150 | TGTACGATGGGCATAAATGTGATAA | 58.708 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
408 | 409 | 4.713553 | TGTACGATGGGCATAAATGTGAT | 58.286 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
409 | 410 | 4.143986 | TGTACGATGGGCATAAATGTGA | 57.856 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
412 | 413 | 4.022935 | AGCAATGTACGATGGGCATAAATG | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
420 | 421 | 1.202177 | GCACAAGCAATGTACGATGGG | 60.202 | 52.381 | 0.00 | 0.00 | 41.46 | 4.00 |
426 | 427 | 5.796935 | CACTCAATTAGCACAAGCAATGTAC | 59.203 | 40.000 | 0.00 | 0.00 | 41.46 | 2.90 |
428 | 429 | 4.520111 | TCACTCAATTAGCACAAGCAATGT | 59.480 | 37.500 | 0.00 | 0.00 | 45.34 | 2.71 |
448 | 449 | 8.600625 | TGCAATAAAATACTACGTGAATCTCAC | 58.399 | 33.333 | 0.00 | 0.00 | 43.65 | 3.51 |
457 | 458 | 8.726870 | ACAACCTATGCAATAAAATACTACGT | 57.273 | 30.769 | 0.00 | 0.00 | 0.00 | 3.57 |
485 | 486 | 2.045926 | GAACCGTGCCCTGATGCT | 60.046 | 61.111 | 0.00 | 0.00 | 0.00 | 3.79 |
499 | 500 | 7.836842 | AGTGTTATATCCAAAACAATGGGAAC | 58.163 | 34.615 | 0.00 | 0.00 | 41.05 | 3.62 |
519 | 531 | 8.147058 | CAGCCTCATATTATGAAGACTAGTGTT | 58.853 | 37.037 | 4.69 | 4.69 | 39.11 | 3.32 |
520 | 532 | 7.288852 | ACAGCCTCATATTATGAAGACTAGTGT | 59.711 | 37.037 | 0.00 | 0.00 | 39.11 | 3.55 |
521 | 533 | 7.665690 | ACAGCCTCATATTATGAAGACTAGTG | 58.334 | 38.462 | 0.00 | 2.47 | 39.11 | 2.74 |
522 | 534 | 7.507277 | TGACAGCCTCATATTATGAAGACTAGT | 59.493 | 37.037 | 7.73 | 0.00 | 39.11 | 2.57 |
525 | 537 | 6.737720 | TGACAGCCTCATATTATGAAGACT | 57.262 | 37.500 | 7.73 | 3.17 | 39.11 | 3.24 |
526 | 538 | 7.792374 | TTTGACAGCCTCATATTATGAAGAC | 57.208 | 36.000 | 7.73 | 1.13 | 39.11 | 3.01 |
527 | 539 | 7.012704 | GCTTTTGACAGCCTCATATTATGAAGA | 59.987 | 37.037 | 7.73 | 0.00 | 39.11 | 2.87 |
529 | 541 | 7.031226 | GCTTTTGACAGCCTCATATTATGAA | 57.969 | 36.000 | 7.73 | 0.00 | 39.11 | 2.57 |
530 | 542 | 6.624352 | GCTTTTGACAGCCTCATATTATGA | 57.376 | 37.500 | 6.23 | 6.23 | 37.76 | 2.15 |
555 | 567 | 6.973229 | AATAGCATTGCCAAATTGAGTTTC | 57.027 | 33.333 | 4.70 | 0.00 | 0.00 | 2.78 |
568 | 580 | 1.994779 | GTGTGTGCCAAATAGCATTGC | 59.005 | 47.619 | 0.00 | 0.00 | 46.24 | 3.56 |
588 | 600 | 8.587608 | AGTATGGAAATAAATGGTTGCATATGG | 58.412 | 33.333 | 4.56 | 0.00 | 39.33 | 2.74 |
641 | 673 | 5.856986 | GGCCGAAGAAGTTTTGAATTTAGTC | 59.143 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
694 | 737 | 3.589881 | GGCCCGTCATCATGCAGC | 61.590 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
700 | 743 | 1.773856 | TTCTTGTGGGCCCGTCATCA | 61.774 | 55.000 | 19.37 | 8.29 | 0.00 | 3.07 |
701 | 744 | 1.002624 | TTCTTGTGGGCCCGTCATC | 60.003 | 57.895 | 19.37 | 5.54 | 0.00 | 2.92 |
702 | 745 | 1.002134 | CTTCTTGTGGGCCCGTCAT | 60.002 | 57.895 | 19.37 | 0.00 | 0.00 | 3.06 |
703 | 746 | 2.144078 | TCTTCTTGTGGGCCCGTCA | 61.144 | 57.895 | 19.37 | 16.51 | 0.00 | 4.35 |
704 | 747 | 1.671379 | GTCTTCTTGTGGGCCCGTC | 60.671 | 63.158 | 19.37 | 13.77 | 0.00 | 4.79 |
705 | 748 | 2.430367 | GTCTTCTTGTGGGCCCGT | 59.570 | 61.111 | 19.37 | 0.00 | 0.00 | 5.28 |
720 | 769 | 0.931005 | GGAACATGCGGAGAATCGTC | 59.069 | 55.000 | 0.00 | 0.00 | 34.37 | 4.20 |
730 | 779 | 3.694072 | TCAATAGAAAAGGGGAACATGCG | 59.306 | 43.478 | 0.00 | 0.00 | 0.00 | 4.73 |
757 | 806 | 6.306356 | CAGAGCGGTTTTGTGAAGATATTTTG | 59.694 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
761 | 810 | 4.832248 | TCAGAGCGGTTTTGTGAAGATAT | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.63 |
762 | 811 | 4.265904 | TCAGAGCGGTTTTGTGAAGATA | 57.734 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
765 | 821 | 3.691049 | TTTCAGAGCGGTTTTGTGAAG | 57.309 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
767 | 823 | 5.957842 | ATAATTTCAGAGCGGTTTTGTGA | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 3.58 |
777 | 835 | 8.438676 | AACTGTGGTACATATAATTTCAGAGC | 57.561 | 34.615 | 0.00 | 0.00 | 44.52 | 4.09 |
800 | 863 | 5.435820 | AACGGAGAGAGTAATATCGGAAC | 57.564 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
845 | 908 | 9.197306 | ACTGTGGTACATATGTATCTAGACAAA | 57.803 | 33.333 | 24.94 | 12.09 | 44.52 | 2.83 |
846 | 909 | 8.762481 | ACTGTGGTACATATGTATCTAGACAA | 57.238 | 34.615 | 24.94 | 7.34 | 44.52 | 3.18 |
847 | 910 | 8.218488 | AGACTGTGGTACATATGTATCTAGACA | 58.782 | 37.037 | 24.94 | 19.83 | 44.52 | 3.41 |
848 | 911 | 8.624367 | AGACTGTGGTACATATGTATCTAGAC | 57.376 | 38.462 | 24.94 | 20.92 | 44.52 | 2.59 |
852 | 915 | 9.588096 | TCAATAGACTGTGGTACATATGTATCT | 57.412 | 33.333 | 23.34 | 18.97 | 44.52 | 1.98 |
853 | 916 | 9.627395 | GTCAATAGACTGTGGTACATATGTATC | 57.373 | 37.037 | 18.27 | 17.98 | 40.79 | 2.24 |
854 | 917 | 9.143155 | TGTCAATAGACTGTGGTACATATGTAT | 57.857 | 33.333 | 18.27 | 1.53 | 43.27 | 2.29 |
855 | 918 | 8.528044 | TGTCAATAGACTGTGGTACATATGTA | 57.472 | 34.615 | 11.62 | 11.62 | 43.27 | 2.29 |
856 | 919 | 7.418337 | TGTCAATAGACTGTGGTACATATGT | 57.582 | 36.000 | 13.93 | 13.93 | 43.27 | 2.29 |
857 | 920 | 7.936950 | CTGTCAATAGACTGTGGTACATATG | 57.063 | 40.000 | 0.00 | 0.00 | 43.27 | 1.78 |
868 | 931 | 7.386299 | AGTTTGCTTTCTACTGTCAATAGACTG | 59.614 | 37.037 | 0.00 | 0.00 | 45.20 | 3.51 |
869 | 932 | 7.386299 | CAGTTTGCTTTCTACTGTCAATAGACT | 59.614 | 37.037 | 0.00 | 0.00 | 45.20 | 3.24 |
870 | 933 | 7.513968 | CAGTTTGCTTTCTACTGTCAATAGAC | 58.486 | 38.462 | 0.00 | 0.00 | 45.19 | 2.59 |
871 | 934 | 7.658179 | CAGTTTGCTTTCTACTGTCAATAGA | 57.342 | 36.000 | 0.00 | 0.00 | 35.65 | 1.98 |
879 | 942 | 5.527582 | ACCAAGTACAGTTTGCTTTCTACTG | 59.472 | 40.000 | 0.00 | 0.00 | 43.72 | 2.74 |
880 | 943 | 5.681639 | ACCAAGTACAGTTTGCTTTCTACT | 58.318 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
881 | 944 | 6.373186 | AACCAAGTACAGTTTGCTTTCTAC | 57.627 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
882 | 945 | 7.399245 | AAAACCAAGTACAGTTTGCTTTCTA | 57.601 | 32.000 | 8.79 | 0.00 | 36.36 | 2.10 |
883 | 946 | 5.914898 | AAACCAAGTACAGTTTGCTTTCT | 57.085 | 34.783 | 7.61 | 0.00 | 34.97 | 2.52 |
884 | 947 | 6.961359 | AAAAACCAAGTACAGTTTGCTTTC | 57.039 | 33.333 | 8.79 | 0.00 | 36.36 | 2.62 |
909 | 972 | 6.649155 | AGGTTGCAACTTTAATTCCAAGTTT | 58.351 | 32.000 | 27.64 | 0.00 | 41.58 | 2.66 |
982 | 1053 | 1.156736 | GTGGATGTTTGGGTGACTCG | 58.843 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1300 | 1390 | 2.031163 | GACCTTGCTGCTGTCCGT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
2150 | 3273 | 3.758023 | CCTTGATGTAAATGACACTGGCA | 59.242 | 43.478 | 0.00 | 0.00 | 42.17 | 4.92 |
2237 | 3360 | 5.213675 | ACAAGAGAAAAGTACTCGTCTTCG | 58.786 | 41.667 | 9.10 | 4.87 | 39.12 | 3.79 |
2324 | 3456 | 3.013648 | AGGTAGGGAGATTGGTAGGTGAA | 59.986 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2341 | 3489 | 5.291971 | AGCAAATGCAAAACTGAAAGGTAG | 58.708 | 37.500 | 8.28 | 0.00 | 45.16 | 3.18 |
2345 | 3495 | 5.721876 | TCAAGCAAATGCAAAACTGAAAG | 57.278 | 34.783 | 8.28 | 0.00 | 45.16 | 2.62 |
2411 | 3598 | 4.957967 | CAGCGTCAATTCGACACAAATATC | 59.042 | 41.667 | 8.20 | 0.00 | 45.70 | 1.63 |
2414 | 3601 | 2.548057 | ACAGCGTCAATTCGACACAAAT | 59.452 | 40.909 | 8.20 | 0.00 | 45.70 | 2.32 |
2682 | 3972 | 4.141711 | GCTAGAATCATACCCAGTCACCAA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
2737 | 4028 | 9.745880 | ATCAGCAAATTAAGAAGCATTAGATTG | 57.254 | 29.630 | 0.00 | 0.00 | 0.00 | 2.67 |
2753 | 4044 | 7.994911 | TGACTAATAGTGGATGATCAGCAAATT | 59.005 | 33.333 | 13.85 | 8.56 | 0.00 | 1.82 |
2754 | 4045 | 7.512130 | TGACTAATAGTGGATGATCAGCAAAT | 58.488 | 34.615 | 13.85 | 2.93 | 0.00 | 2.32 |
2799 | 4191 | 9.196552 | CATGGAAAAATAAAACTTCTTCAGTCC | 57.803 | 33.333 | 0.00 | 0.00 | 32.94 | 3.85 |
2800 | 4192 | 9.750125 | ACATGGAAAAATAAAACTTCTTCAGTC | 57.250 | 29.630 | 0.00 | 0.00 | 32.94 | 3.51 |
2892 | 4360 | 9.474920 | TGTTTGGAAATAACAAGCTTAATTCAG | 57.525 | 29.630 | 0.00 | 0.00 | 32.89 | 3.02 |
3009 | 4532 | 4.082125 | AGACTGACCCAATGTGGAAAATC | 58.918 | 43.478 | 0.00 | 0.00 | 40.96 | 2.17 |
3023 | 4546 | 2.558359 | CCCAACATGGAAAAGACTGACC | 59.442 | 50.000 | 0.00 | 0.00 | 40.96 | 4.02 |
3066 | 4589 | 4.745125 | GGAACCTGAAAAGTAAAGCAAAGC | 59.255 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3313 | 4841 | 6.083487 | TCTCCAGATTTCCTCCAAAATGAT | 57.917 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
3328 | 4856 | 2.305927 | ACGAACCCAAACATCTCCAGAT | 59.694 | 45.455 | 0.00 | 0.00 | 34.56 | 2.90 |
3337 | 4865 | 4.927978 | AATTCATCAACGAACCCAAACA | 57.072 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.