Multiple sequence alignment - TraesCS5B01G043800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G043800 chr5B 100.000 4494 0 0 1 4494 48875375 48870882 0.000000e+00 8299.0
1 TraesCS5B01G043800 chr5D 93.135 2185 88 34 1557 3693 46611495 46613665 0.000000e+00 3147.0
2 TraesCS5B01G043800 chr5D 82.217 1344 188 30 1120 2430 48656700 48658025 0.000000e+00 1110.0
3 TraesCS5B01G043800 chr5D 92.925 735 25 7 818 1527 46610766 46611498 0.000000e+00 1044.0
4 TraesCS5B01G043800 chr5D 91.954 522 34 6 3869 4388 46613661 46614176 0.000000e+00 725.0
5 TraesCS5B01G043800 chr5D 92.560 457 26 6 4040 4492 46336058 46335606 0.000000e+00 649.0
6 TraesCS5B01G043800 chr5D 90.717 237 18 3 4257 4492 46343846 46343613 3.380000e-81 313.0
7 TraesCS5B01G043800 chr5D 78.934 394 63 9 2008 2400 46606944 46607318 2.680000e-62 250.0
8 TraesCS5B01G043800 chr5D 88.095 126 11 3 552 675 390419540 390419663 3.620000e-31 147.0
9 TraesCS5B01G043800 chr5D 93.056 72 5 0 2481 2552 48659887 48659958 6.150000e-19 106.0
10 TraesCS5B01G043800 chr5D 93.846 65 4 0 4417 4481 46614167 46614231 1.030000e-16 99.0
11 TraesCS5B01G043800 chr5D 94.444 36 2 0 2857 2892 48660456 48660491 6.280000e-04 56.5
12 TraesCS5B01G043800 chr5A 91.953 1603 83 17 1255 2839 37641530 37639956 0.000000e+00 2204.0
13 TraesCS5B01G043800 chr5A 81.355 1373 201 34 1216 2552 38118654 38120007 0.000000e+00 1066.0
14 TraesCS5B01G043800 chr5A 89.892 554 38 12 3948 4492 37637157 37636613 0.000000e+00 697.0
15 TraesCS5B01G043800 chr5A 91.494 482 27 6 2832 3300 37638230 37637750 0.000000e+00 651.0
16 TraesCS5B01G043800 chr5A 92.208 308 22 1 3374 3679 37637754 37637447 6.900000e-118 435.0
17 TraesCS5B01G043800 chr5A 78.008 241 34 13 3006 3244 38120399 38120622 2.820000e-27 134.0
18 TraesCS5B01G043800 chr3A 87.861 692 53 14 1 674 128721000 128720322 0.000000e+00 784.0
19 TraesCS5B01G043800 chr3A 90.000 190 16 3 3682 3871 732419649 732419463 4.490000e-60 243.0
20 TraesCS5B01G043800 chr3A 79.913 229 35 5 2215 2439 196001980 196001759 1.670000e-34 158.0
21 TraesCS5B01G043800 chr3A 85.577 104 12 3 576 677 128834298 128834400 6.150000e-19 106.0
22 TraesCS5B01G043800 chr6B 91.577 558 37 9 1 555 637853026 637853576 0.000000e+00 761.0
23 TraesCS5B01G043800 chr6B 82.110 218 31 7 2225 2439 334886593 334886381 3.570000e-41 180.0
24 TraesCS5B01G043800 chr6D 90.519 559 42 9 1 555 53760467 53761018 0.000000e+00 728.0
25 TraesCS5B01G043800 chr6D 88.830 188 18 3 3686 3872 4031477 4031292 1.260000e-55 228.0
26 TraesCS5B01G043800 chr6D 82.114 123 16 6 564 683 450531049 450530930 2.860000e-17 100.0
27 TraesCS5B01G043800 chr2A 90.926 540 43 5 1 536 767802504 767803041 0.000000e+00 721.0
28 TraesCS5B01G043800 chr1A 91.767 498 33 5 1 498 389766662 389767151 0.000000e+00 686.0
29 TraesCS5B01G043800 chr1B 92.009 463 34 3 1 463 307134579 307135038 0.000000e+00 647.0
30 TraesCS5B01G043800 chr1B 85.165 182 23 4 2222 2400 345543604 345543424 2.760000e-42 183.0
31 TraesCS5B01G043800 chr1B 86.087 115 11 5 564 676 538885310 538885421 7.900000e-23 119.0
32 TraesCS5B01G043800 chr1B 84.071 113 14 4 564 675 644618620 644618511 6.150000e-19 106.0
33 TraesCS5B01G043800 chr3D 88.368 533 52 8 1 530 104828193 104827668 2.280000e-177 632.0
34 TraesCS5B01G043800 chr3D 76.975 443 64 28 1 433 75137481 75137895 7.570000e-53 219.0
35 TraesCS5B01G043800 chr3D 78.571 140 25 5 408 543 300687866 300688004 2.230000e-13 87.9
36 TraesCS5B01G043800 chr7B 76.571 700 103 44 1 673 93310502 93311167 1.210000e-85 327.0
37 TraesCS5B01G043800 chr7B 95.376 173 7 1 3693 3865 129311030 129311201 1.590000e-69 274.0
38 TraesCS5B01G043800 chr4D 78.613 519 67 32 1 503 508234027 508233537 2.030000e-78 303.0
39 TraesCS5B01G043800 chr4D 77.798 545 80 30 14 533 439219792 439219264 9.450000e-77 298.0
40 TraesCS5B01G043800 chr4D 90.698 172 12 3 3693 3861 17560455 17560285 4.520000e-55 226.0
41 TraesCS5B01G043800 chr4D 83.186 113 17 2 564 675 488768600 488768711 7.950000e-18 102.0
42 TraesCS5B01G043800 chr7D 77.273 572 86 34 4 544 30239548 30240106 3.400000e-76 296.0
43 TraesCS5B01G043800 chr7D 92.398 171 9 3 3694 3861 52354929 52355098 1.620000e-59 241.0
44 TraesCS5B01G043800 chr7D 89.714 175 16 2 3693 3867 518927985 518927813 5.850000e-54 222.0
45 TraesCS5B01G043800 chr7D 86.139 101 11 3 577 676 517106709 517106807 6.150000e-19 106.0
46 TraesCS5B01G043800 chr2D 81.818 374 41 19 1 368 39390312 39390664 5.690000e-74 289.0
47 TraesCS5B01G043800 chr7A 94.767 172 9 0 3694 3865 60050801 60050972 7.410000e-68 268.0
48 TraesCS5B01G043800 chr7A 93.605 172 11 0 3694 3865 59927405 59927576 1.600000e-64 257.0
49 TraesCS5B01G043800 chr7A 81.517 211 31 7 2223 2430 586470695 586470900 2.780000e-37 167.0
50 TraesCS5B01G043800 chr4A 93.023 172 11 1 3694 3865 625795516 625795686 2.680000e-62 250.0
51 TraesCS5B01G043800 chr1D 76.268 493 64 31 2215 2677 328156911 328156442 3.520000e-51 213.0
52 TraesCS5B01G043800 chr1D 83.065 124 17 4 564 684 436145364 436145242 4.750000e-20 110.0
53 TraesCS5B01G043800 chr3B 82.258 124 20 2 554 676 807155831 807155709 6.150000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G043800 chr5B 48870882 48875375 4493 True 8299.000000 8299 100.000000 1 4494 1 chr5B.!!$R1 4493
1 TraesCS5B01G043800 chr5D 46606944 46614231 7287 False 1053.000000 3147 90.158800 818 4481 5 chr5D.!!$F2 3663
2 TraesCS5B01G043800 chr5D 48656700 48660491 3791 False 424.166667 1110 89.905667 1120 2892 3 chr5D.!!$F3 1772
3 TraesCS5B01G043800 chr5A 37636613 37641530 4917 True 996.750000 2204 91.386750 1255 4492 4 chr5A.!!$R1 3237
4 TraesCS5B01G043800 chr5A 38118654 38120622 1968 False 600.000000 1066 79.681500 1216 3244 2 chr5A.!!$F1 2028
5 TraesCS5B01G043800 chr3A 128720322 128721000 678 True 784.000000 784 87.861000 1 674 1 chr3A.!!$R1 673
6 TraesCS5B01G043800 chr6B 637853026 637853576 550 False 761.000000 761 91.577000 1 555 1 chr6B.!!$F1 554
7 TraesCS5B01G043800 chr6D 53760467 53761018 551 False 728.000000 728 90.519000 1 555 1 chr6D.!!$F1 554
8 TraesCS5B01G043800 chr2A 767802504 767803041 537 False 721.000000 721 90.926000 1 536 1 chr2A.!!$F1 535
9 TraesCS5B01G043800 chr3D 104827668 104828193 525 True 632.000000 632 88.368000 1 530 1 chr3D.!!$R1 529
10 TraesCS5B01G043800 chr7B 93310502 93311167 665 False 327.000000 327 76.571000 1 673 1 chr7B.!!$F1 672
11 TraesCS5B01G043800 chr4D 439219264 439219792 528 True 298.000000 298 77.798000 14 533 1 chr4D.!!$R2 519
12 TraesCS5B01G043800 chr7D 30239548 30240106 558 False 296.000000 296 77.273000 4 544 1 chr7D.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
791 858 0.108804 GTGGATTTGGACGAGCTCGA 60.109 55.0 40.58 19.92 43.02 4.04 F
1028 4057 0.036010 CAACCTCTACACCCCTGCAG 60.036 60.0 6.78 6.78 0.00 4.41 F
2368 5496 0.240945 GCTTGTACCATGCGTGCTTT 59.759 50.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2458 7378 1.199789 CAGCACTCGCAGCCAAATTTA 59.800 47.619 0.0 0.0 42.27 1.40 R
2551 7497 2.557056 TGCTTGAGTGAACGCTACTAGT 59.443 45.455 0.0 0.0 0.00 2.57 R
3868 10803 0.031585 GGCCGAGGTTTTCCAAACAC 59.968 55.000 0.0 0.0 43.73 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
411 452 2.368878 AGGAGAGGGGAATGGGGC 60.369 66.667 0.00 0.00 0.00 5.80
507 548 2.599139 TACAGCCTACCGCCAGGGAT 62.599 60.000 3.06 0.00 43.47 3.85
524 566 1.482741 GGATAGTGGAGGTAGGGGGAC 60.483 61.905 0.00 0.00 0.00 4.46
527 569 2.948354 TGGAGGTAGGGGGACGGA 60.948 66.667 0.00 0.00 0.00 4.69
532 580 4.874533 GTAGGGGGACGGAGGGGG 62.875 77.778 0.00 0.00 0.00 5.40
572 639 1.301953 GTTCAGGGTTACCGCCGTT 60.302 57.895 0.00 0.00 43.47 4.44
592 659 1.522569 CCCCTGGCGGTAAGAGAAG 59.477 63.158 0.00 0.00 0.00 2.85
602 669 2.362717 CGGTAAGAGAAGGGGTCAGATC 59.637 54.545 0.00 0.00 0.00 2.75
642 709 2.362717 AGGGTCCGATCTCGATTTTCTC 59.637 50.000 0.22 0.00 43.02 2.87
665 732 3.242804 CGCTAAAAGGGTCAAAACACGAA 60.243 43.478 0.00 0.00 32.44 3.85
676 743 2.939103 CAAAACACGAAATTTTGCCCCA 59.061 40.909 5.27 0.00 39.46 4.96
677 744 2.524569 AACACGAAATTTTGCCCCAG 57.475 45.000 5.27 0.00 0.00 4.45
679 746 0.670239 CACGAAATTTTGCCCCAGCC 60.670 55.000 5.27 0.00 38.69 4.85
681 748 1.079197 GAAATTTTGCCCCAGCCGG 60.079 57.895 0.00 0.00 38.69 6.13
703 770 2.025441 GCGCGCTTTCAACCACAA 59.975 55.556 26.67 0.00 0.00 3.33
705 772 1.063327 CGCGCTTTCAACCACAACA 59.937 52.632 5.56 0.00 0.00 3.33
706 773 1.199852 CGCGCTTTCAACCACAACAC 61.200 55.000 5.56 0.00 0.00 3.32
707 774 0.869880 GCGCTTTCAACCACAACACC 60.870 55.000 0.00 0.00 0.00 4.16
710 777 1.203523 GCTTTCAACCACAACACCACA 59.796 47.619 0.00 0.00 0.00 4.17
711 778 2.874849 CTTTCAACCACAACACCACAC 58.125 47.619 0.00 0.00 0.00 3.82
712 779 1.911057 TTCAACCACAACACCACACA 58.089 45.000 0.00 0.00 0.00 3.72
713 780 1.169577 TCAACCACAACACCACACAC 58.830 50.000 0.00 0.00 0.00 3.82
714 781 1.173043 CAACCACAACACCACACACT 58.827 50.000 0.00 0.00 0.00 3.55
715 782 1.132262 CAACCACAACACCACACACTC 59.868 52.381 0.00 0.00 0.00 3.51
716 783 0.618458 ACCACAACACCACACACTCT 59.382 50.000 0.00 0.00 0.00 3.24
717 784 1.299541 CCACAACACCACACACTCTC 58.700 55.000 0.00 0.00 0.00 3.20
718 785 0.930310 CACAACACCACACACTCTCG 59.070 55.000 0.00 0.00 0.00 4.04
719 786 0.810031 ACAACACCACACACTCTCGC 60.810 55.000 0.00 0.00 0.00 5.03
720 787 1.227556 AACACCACACACTCTCGCC 60.228 57.895 0.00 0.00 0.00 5.54
721 788 2.357517 CACCACACACTCTCGCCC 60.358 66.667 0.00 0.00 0.00 6.13
722 789 2.842462 ACCACACACTCTCGCCCA 60.842 61.111 0.00 0.00 0.00 5.36
723 790 2.047844 CCACACACTCTCGCCCAG 60.048 66.667 0.00 0.00 0.00 4.45
724 791 2.740055 CACACACTCTCGCCCAGC 60.740 66.667 0.00 0.00 0.00 4.85
725 792 2.919856 ACACACTCTCGCCCAGCT 60.920 61.111 0.00 0.00 0.00 4.24
726 793 2.125753 CACACTCTCGCCCAGCTC 60.126 66.667 0.00 0.00 0.00 4.09
728 795 3.073735 CACTCTCGCCCAGCTCCT 61.074 66.667 0.00 0.00 0.00 3.69
729 796 1.754621 CACTCTCGCCCAGCTCCTA 60.755 63.158 0.00 0.00 0.00 2.94
730 797 1.454847 ACTCTCGCCCAGCTCCTAG 60.455 63.158 0.00 0.00 0.00 3.02
731 798 2.123683 TCTCGCCCAGCTCCTAGG 60.124 66.667 0.82 0.82 0.00 3.02
737 804 4.860881 CCAGCTCCTAGGGGCGGA 62.861 72.222 32.67 0.93 0.00 5.54
738 805 2.525381 CAGCTCCTAGGGGCGGAT 60.525 66.667 28.02 8.15 0.00 4.18
740 807 2.143419 AGCTCCTAGGGGCGGATTG 61.143 63.158 28.01 0.46 0.00 2.67
741 808 2.140792 GCTCCTAGGGGCGGATTGA 61.141 63.158 20.25 0.00 0.00 2.57
742 809 2.053618 CTCCTAGGGGCGGATTGAG 58.946 63.158 9.46 0.00 0.00 3.02
744 811 2.029666 CTAGGGGCGGATTGAGCG 59.970 66.667 0.00 0.00 35.00 5.03
745 812 4.235762 TAGGGGCGGATTGAGCGC 62.236 66.667 0.00 0.00 45.25 5.92
752 819 3.567797 GGATTGAGCGCGTGCCTC 61.568 66.667 19.02 14.66 44.31 4.70
754 821 4.742201 ATTGAGCGCGTGCCTCGT 62.742 61.111 19.02 0.00 44.31 4.18
766 833 4.148825 CCTCGTCGCCTTCCCCTG 62.149 72.222 0.00 0.00 0.00 4.45
767 834 3.068691 CTCGTCGCCTTCCCCTGA 61.069 66.667 0.00 0.00 0.00 3.86
768 835 3.358076 CTCGTCGCCTTCCCCTGAC 62.358 68.421 0.00 0.00 0.00 3.51
769 836 4.796231 CGTCGCCTTCCCCTGACG 62.796 72.222 0.00 0.00 46.57 4.35
770 837 4.452733 GTCGCCTTCCCCTGACGG 62.453 72.222 0.00 0.00 33.10 4.79
774 841 4.760047 CCTTCCCCTGACGGCGTG 62.760 72.222 21.19 3.16 0.00 5.34
775 842 4.760047 CTTCCCCTGACGGCGTGG 62.760 72.222 21.19 14.16 0.00 4.94
778 845 4.096003 CCCCTGACGGCGTGGATT 62.096 66.667 21.19 0.00 0.00 3.01
780 847 2.398554 CCCTGACGGCGTGGATTTG 61.399 63.158 21.19 0.00 0.00 2.32
782 849 1.375396 CTGACGGCGTGGATTTGGA 60.375 57.895 21.19 0.00 0.00 3.53
783 850 1.635663 CTGACGGCGTGGATTTGGAC 61.636 60.000 21.19 0.00 0.00 4.02
785 852 2.433491 CGGCGTGGATTTGGACGA 60.433 61.111 0.00 0.00 37.81 4.20
786 853 2.452813 CGGCGTGGATTTGGACGAG 61.453 63.158 0.00 0.00 37.81 4.18
787 854 2.750888 GGCGTGGATTTGGACGAGC 61.751 63.158 0.00 0.00 37.81 5.03
790 857 1.413767 CGTGGATTTGGACGAGCTCG 61.414 60.000 33.45 33.45 46.33 5.03
791 858 0.108804 GTGGATTTGGACGAGCTCGA 60.109 55.000 40.58 19.92 43.02 4.04
792 859 0.173481 TGGATTTGGACGAGCTCGAG 59.827 55.000 40.58 15.25 43.02 4.04
793 860 1.148759 GGATTTGGACGAGCTCGAGC 61.149 60.000 40.58 30.01 43.02 5.03
803 870 2.343758 GCTCGAGCTGTCCACCAA 59.656 61.111 29.88 0.00 38.21 3.67
804 871 2.029844 GCTCGAGCTGTCCACCAAC 61.030 63.158 29.88 0.00 38.21 3.77
805 872 1.367471 CTCGAGCTGTCCACCAACA 59.633 57.895 0.00 0.00 0.00 3.33
811 878 1.669115 CTGTCCACCAACAGCGAGG 60.669 63.158 0.00 0.00 40.18 4.63
812 879 2.099652 CTGTCCACCAACAGCGAGGA 62.100 60.000 0.00 0.00 40.18 3.71
813 880 1.374758 GTCCACCAACAGCGAGGAG 60.375 63.158 0.00 0.00 0.00 3.69
814 881 1.837051 TCCACCAACAGCGAGGAGT 60.837 57.895 0.00 0.00 0.00 3.85
817 884 2.743928 CCAACAGCGAGGAGTGGC 60.744 66.667 0.00 0.00 0.00 5.01
818 885 2.031012 CAACAGCGAGGAGTGGCA 59.969 61.111 0.00 0.00 0.00 4.92
819 886 2.031163 AACAGCGAGGAGTGGCAC 59.969 61.111 10.29 10.29 0.00 5.01
821 888 2.031012 CAGCGAGGAGTGGCACAA 59.969 61.111 21.41 0.00 44.16 3.33
826 3832 1.813513 CGAGGAGTGGCACAAGAATT 58.186 50.000 21.41 0.00 44.16 2.17
847 3853 1.674441 CATTCATGGCTTGCATCGACT 59.326 47.619 0.00 0.00 0.00 4.18
854 3860 2.100584 TGGCTTGCATCGACTTGTTTTT 59.899 40.909 0.00 0.00 0.00 1.94
871 3877 7.836685 ACTTGTTTTTAAATTGGAAAATGGGGT 59.163 29.630 0.00 0.41 0.00 4.95
875 3881 5.662674 TTAAATTGGAAAATGGGGTACGG 57.337 39.130 0.00 0.00 0.00 4.02
905 3912 8.828644 TGGATTCAAATTTCAAATTGACACAAG 58.171 29.630 0.00 0.00 35.42 3.16
952 3969 5.070446 GTCAAAAAGGAGGGAAAAGACCAAT 59.930 40.000 0.00 0.00 0.00 3.16
953 3970 5.070313 TCAAAAAGGAGGGAAAAGACCAATG 59.930 40.000 0.00 0.00 0.00 2.82
954 3971 4.469469 AAAGGAGGGAAAAGACCAATGA 57.531 40.909 0.00 0.00 0.00 2.57
955 3972 3.728385 AGGAGGGAAAAGACCAATGAG 57.272 47.619 0.00 0.00 0.00 2.90
956 3973 2.095461 GGAGGGAAAAGACCAATGAGC 58.905 52.381 0.00 0.00 0.00 4.26
957 3974 1.740025 GAGGGAAAAGACCAATGAGCG 59.260 52.381 0.00 0.00 0.00 5.03
959 3976 0.811281 GGAAAAGACCAATGAGCGGG 59.189 55.000 0.00 0.00 0.00 6.13
960 3977 0.171231 GAAAAGACCAATGAGCGGGC 59.829 55.000 0.00 0.00 0.00 6.13
961 3978 0.539438 AAAAGACCAATGAGCGGGCA 60.539 50.000 0.00 0.00 31.91 5.36
962 3979 1.244019 AAAGACCAATGAGCGGGCAC 61.244 55.000 0.00 0.00 31.91 5.01
963 3980 3.499737 GACCAATGAGCGGGCACG 61.500 66.667 2.50 2.50 44.63 5.34
1028 4057 0.036010 CAACCTCTACACCCCTGCAG 60.036 60.000 6.78 6.78 0.00 4.41
1147 4176 2.363147 GCTCCCTCTCCACCGTCT 60.363 66.667 0.00 0.00 0.00 4.18
1160 4189 2.752238 CGTCTCCTCCTCGCACCT 60.752 66.667 0.00 0.00 0.00 4.00
1419 4490 1.299648 CCTCATCAACGCCAGGGAA 59.700 57.895 0.00 0.00 0.00 3.97
1542 4646 3.607661 GAGGATCCCCGCGAGTCC 61.608 72.222 8.23 9.34 37.58 3.85
1543 4647 4.144727 AGGATCCCCGCGAGTCCT 62.145 66.667 8.23 11.68 36.29 3.85
1544 4648 3.917760 GGATCCCCGCGAGTCCTG 61.918 72.222 8.23 0.00 0.00 3.86
1545 4649 3.917760 GATCCCCGCGAGTCCTGG 61.918 72.222 8.23 0.00 0.00 4.45
1546 4650 4.458829 ATCCCCGCGAGTCCTGGA 62.459 66.667 8.23 3.66 0.00 3.86
1547 4651 3.976490 ATCCCCGCGAGTCCTGGAA 62.976 63.158 8.23 0.00 0.00 3.53
1548 4652 4.452733 CCCCGCGAGTCCTGGAAC 62.453 72.222 8.23 0.00 0.00 3.62
1549 4653 4.452733 CCCGCGAGTCCTGGAACC 62.453 72.222 8.23 0.00 0.00 3.62
1550 4654 3.382832 CCGCGAGTCCTGGAACCT 61.383 66.667 8.23 0.00 0.00 3.50
1551 4655 2.182030 CGCGAGTCCTGGAACCTC 59.818 66.667 0.00 0.66 0.00 3.85
1552 4656 2.636412 CGCGAGTCCTGGAACCTCA 61.636 63.158 0.00 0.00 0.00 3.86
1553 4657 1.079750 GCGAGTCCTGGAACCTCAC 60.080 63.158 13.03 1.85 0.00 3.51
1554 4658 1.592223 CGAGTCCTGGAACCTCACC 59.408 63.158 13.03 0.00 0.00 4.02
1555 4659 1.592223 GAGTCCTGGAACCTCACCG 59.408 63.158 0.00 0.00 0.00 4.94
1556 4660 2.047179 GTCCTGGAACCTCACCGC 60.047 66.667 0.00 0.00 0.00 5.68
1557 4661 3.319198 TCCTGGAACCTCACCGCC 61.319 66.667 0.00 0.00 0.00 6.13
1558 4662 4.760047 CCTGGAACCTCACCGCCG 62.760 72.222 0.00 0.00 0.00 6.46
1559 4663 3.691342 CTGGAACCTCACCGCCGA 61.691 66.667 0.00 0.00 0.00 5.54
1777 4896 2.375345 TTCCTCCCGGAGATTGGCC 61.375 63.158 16.69 0.00 41.25 5.36
2220 5348 4.101448 AAGAGGCCGCCGCAGATT 62.101 61.111 16.13 0.00 36.38 2.40
2368 5496 0.240945 GCTTGTACCATGCGTGCTTT 59.759 50.000 0.00 0.00 0.00 3.51
2373 5501 0.250510 TACCATGCGTGCTTTCACCA 60.251 50.000 0.00 0.00 40.04 4.17
2402 7302 2.270434 TCAAGCCAGATCCCTACCTT 57.730 50.000 0.00 0.00 0.00 3.50
2416 7316 4.438346 CCTTCGGCAGGTAATCGG 57.562 61.111 0.00 0.00 37.99 4.18
2458 7378 3.944015 GAGGCTTGTGCATTTCAGATAGT 59.056 43.478 0.00 0.00 41.91 2.12
2500 7442 1.917872 TTGTTGGTAGGATTGGTGCC 58.082 50.000 0.00 0.00 0.00 5.01
2682 7858 6.013206 TGGCACATACTCTTCTTTTAGGGTTA 60.013 38.462 0.00 0.00 29.85 2.85
2683 7859 6.882678 GGCACATACTCTTCTTTTAGGGTTAA 59.117 38.462 0.00 0.00 29.85 2.01
2684 7860 7.392393 GGCACATACTCTTCTTTTAGGGTTAAA 59.608 37.037 0.00 0.00 29.85 1.52
2780 7956 3.988379 AAATAATGTATGTGCGCCCAG 57.012 42.857 4.18 0.00 0.00 4.45
2800 7976 4.637534 CCAGGAACTATGTTCATTCACAGG 59.362 45.833 11.75 0.00 36.02 4.00
3163 10090 9.490379 TCAGTTCTGGATCTTTTCTTTAGTAAC 57.510 33.333 0.00 0.00 0.00 2.50
3274 10207 0.466189 GGTATGGTGCATGGTCTGGG 60.466 60.000 0.00 0.00 0.00 4.45
3285 10218 0.392706 TGGTCTGGGCATATGCTACG 59.607 55.000 26.12 14.41 41.70 3.51
3342 10275 1.078143 CCAGTCTAAGGCAGCACCC 60.078 63.158 0.00 0.00 40.58 4.61
3369 10302 8.722342 TGCTTCTTTTTCGTAATTATGTTGAC 57.278 30.769 4.63 0.00 0.00 3.18
3465 10398 3.129988 CCTCTCCATGACTTCAAAATGGC 59.870 47.826 0.00 0.00 40.62 4.40
3517 10450 7.552459 AGCTAGAATTCTTCTGAGAAAGTACC 58.448 38.462 14.36 0.00 44.61 3.34
3532 10465 8.098912 TGAGAAAGTACCCAAGGTATTTCTTAC 58.901 37.037 20.15 14.15 40.95 2.34
3556 10490 7.551585 ACCAGAGTAGATTCTGATGTAGTTTG 58.448 38.462 3.76 0.00 45.95 2.93
3571 10506 9.214957 TGATGTAGTTTGTCCTGTTTTACTATG 57.785 33.333 0.00 0.00 0.00 2.23
3579 10514 8.492673 TTGTCCTGTTTTACTATGTCATGATC 57.507 34.615 0.00 0.00 0.00 2.92
3641 10576 9.910511 GAGCATGCTAAAATGAAAACAATAATG 57.089 29.630 22.74 0.00 0.00 1.90
3686 10621 5.302360 TCTTTAGTGTTGGTAGCGTTGAAT 58.698 37.500 0.00 0.00 0.00 2.57
3687 10622 5.761234 TCTTTAGTGTTGGTAGCGTTGAATT 59.239 36.000 0.00 0.00 0.00 2.17
3693 10628 3.889196 TGGTAGCGTTGAATTGTGTTC 57.111 42.857 0.00 0.00 0.00 3.18
3694 10629 3.206964 TGGTAGCGTTGAATTGTGTTCA 58.793 40.909 0.00 0.00 0.00 3.18
3695 10630 3.628032 TGGTAGCGTTGAATTGTGTTCAA 59.372 39.130 0.00 0.00 36.21 2.69
3696 10631 4.277174 TGGTAGCGTTGAATTGTGTTCAAT 59.723 37.500 6.50 0.00 44.94 2.57
3697 10632 4.616802 GGTAGCGTTGAATTGTGTTCAATG 59.383 41.667 15.01 15.01 42.60 2.82
3698 10633 4.305989 AGCGTTGAATTGTGTTCAATGT 57.694 36.364 18.51 7.72 43.62 2.71
3699 10634 4.681744 AGCGTTGAATTGTGTTCAATGTT 58.318 34.783 18.51 12.83 43.62 2.71
3700 10635 5.108517 AGCGTTGAATTGTGTTCAATGTTT 58.891 33.333 18.51 9.05 43.62 2.83
3701 10636 5.580297 AGCGTTGAATTGTGTTCAATGTTTT 59.420 32.000 18.51 7.29 43.62 2.43
3702 10637 6.754209 AGCGTTGAATTGTGTTCAATGTTTTA 59.246 30.769 18.51 0.00 43.62 1.52
3703 10638 7.276658 AGCGTTGAATTGTGTTCAATGTTTTAA 59.723 29.630 18.51 0.00 43.62 1.52
3704 10639 7.900352 GCGTTGAATTGTGTTCAATGTTTTAAA 59.100 29.630 18.51 0.00 43.62 1.52
3705 10640 9.913451 CGTTGAATTGTGTTCAATGTTTTAAAT 57.087 25.926 12.33 0.00 42.60 1.40
3709 10644 9.726034 GAATTGTGTTCAATGTTTTAAATAGCG 57.274 29.630 0.00 0.00 42.60 4.26
3710 10645 7.630470 TTGTGTTCAATGTTTTAAATAGCGG 57.370 32.000 0.00 0.00 0.00 5.52
3711 10646 6.153067 TGTGTTCAATGTTTTAAATAGCGGG 58.847 36.000 0.00 0.00 0.00 6.13
3712 10647 5.061684 GTGTTCAATGTTTTAAATAGCGGGC 59.938 40.000 0.00 0.00 0.00 6.13
3713 10648 5.047660 TGTTCAATGTTTTAAATAGCGGGCT 60.048 36.000 0.00 0.00 0.00 5.19
3714 10649 6.151312 TGTTCAATGTTTTAAATAGCGGGCTA 59.849 34.615 2.42 2.42 0.00 3.93
3715 10650 6.952773 TCAATGTTTTAAATAGCGGGCTAT 57.047 33.333 7.36 7.36 40.63 2.97
3716 10651 6.734137 TCAATGTTTTAAATAGCGGGCTATG 58.266 36.000 13.53 0.00 39.03 2.23
3717 10652 4.561735 TGTTTTAAATAGCGGGCTATGC 57.438 40.909 13.53 2.55 39.03 3.14
3733 10668 3.583086 GCCAAATAGCGGCGGACC 61.583 66.667 9.78 0.00 40.35 4.46
3734 10669 2.189521 CCAAATAGCGGCGGACCT 59.810 61.111 9.78 0.00 0.00 3.85
3735 10670 1.887707 CCAAATAGCGGCGGACCTC 60.888 63.158 9.78 0.00 0.00 3.85
3736 10671 1.153449 CAAATAGCGGCGGACCTCA 60.153 57.895 9.78 0.00 0.00 3.86
3737 10672 0.742990 CAAATAGCGGCGGACCTCAA 60.743 55.000 9.78 0.00 0.00 3.02
3738 10673 0.035820 AAATAGCGGCGGACCTCAAA 60.036 50.000 9.78 0.00 0.00 2.69
3739 10674 0.035820 AATAGCGGCGGACCTCAAAA 60.036 50.000 9.78 0.00 0.00 2.44
3740 10675 0.180406 ATAGCGGCGGACCTCAAAAT 59.820 50.000 9.78 0.00 0.00 1.82
3741 10676 0.461339 TAGCGGCGGACCTCAAAATC 60.461 55.000 9.78 0.00 0.00 2.17
3742 10677 2.038269 GCGGCGGACCTCAAAATCA 61.038 57.895 9.78 0.00 0.00 2.57
3743 10678 1.982073 GCGGCGGACCTCAAAATCAG 61.982 60.000 9.78 0.00 0.00 2.90
3744 10679 1.803289 GGCGGACCTCAAAATCAGC 59.197 57.895 0.00 0.00 35.57 4.26
3745 10680 0.678048 GGCGGACCTCAAAATCAGCT 60.678 55.000 0.00 0.00 36.44 4.24
3746 10681 1.406887 GGCGGACCTCAAAATCAGCTA 60.407 52.381 0.00 0.00 36.44 3.32
3747 10682 2.565841 GCGGACCTCAAAATCAGCTAT 58.434 47.619 0.00 0.00 33.80 2.97
3748 10683 3.494398 GGCGGACCTCAAAATCAGCTATA 60.494 47.826 0.00 0.00 36.44 1.31
3749 10684 3.743396 GCGGACCTCAAAATCAGCTATAG 59.257 47.826 0.00 0.00 33.80 1.31
3750 10685 3.743396 CGGACCTCAAAATCAGCTATAGC 59.257 47.826 17.33 17.33 42.49 2.97
3757 10692 1.938585 AATCAGCTATAGCGGGGCTA 58.061 50.000 22.31 5.82 45.55 3.93
3764 10699 2.678934 TAGCGGGGCTATAGCGGG 60.679 66.667 18.30 10.71 43.26 6.13
3767 10702 2.678934 CGGGGCTATAGCGGGCTA 60.679 66.667 18.30 2.42 43.26 3.93
3768 10703 2.058595 CGGGGCTATAGCGGGCTAT 61.059 63.158 18.30 16.61 43.26 2.97
3769 10704 0.754217 CGGGGCTATAGCGGGCTATA 60.754 60.000 18.30 17.02 43.26 1.31
3775 10710 3.701532 CTATAGCGGGCTATAGCAGAC 57.298 52.381 26.16 13.55 46.26 3.51
3776 10711 2.223803 ATAGCGGGCTATAGCAGACT 57.776 50.000 25.53 19.33 44.36 3.24
3777 10712 2.873094 TAGCGGGCTATAGCAGACTA 57.127 50.000 25.53 18.41 44.36 2.59
3778 10713 2.223803 AGCGGGCTATAGCAGACTAT 57.776 50.000 25.53 4.03 44.36 2.12
3779 10714 2.530701 AGCGGGCTATAGCAGACTATT 58.469 47.619 25.53 2.19 44.36 1.73
3780 10715 2.900546 AGCGGGCTATAGCAGACTATTT 59.099 45.455 25.53 0.64 44.36 1.40
3781 10716 4.087182 AGCGGGCTATAGCAGACTATTTA 58.913 43.478 25.53 0.00 44.36 1.40
3782 10717 4.712337 AGCGGGCTATAGCAGACTATTTAT 59.288 41.667 25.53 0.00 44.36 1.40
3783 10718 5.892119 AGCGGGCTATAGCAGACTATTTATA 59.108 40.000 25.53 0.00 44.36 0.98
3784 10719 5.978322 GCGGGCTATAGCAGACTATTTATAC 59.022 44.000 25.53 3.85 44.36 1.47
3785 10720 6.405508 GCGGGCTATAGCAGACTATTTATACA 60.406 42.308 25.53 0.00 44.36 2.29
3786 10721 7.684670 GCGGGCTATAGCAGACTATTTATACAT 60.685 40.741 25.53 0.00 44.36 2.29
3787 10722 7.649705 CGGGCTATAGCAGACTATTTATACATG 59.350 40.741 25.53 0.00 44.36 3.21
3788 10723 8.696374 GGGCTATAGCAGACTATTTATACATGA 58.304 37.037 25.53 0.00 44.36 3.07
3795 10730 9.632638 AGCAGACTATTTATACATGAAACCATT 57.367 29.630 0.00 0.00 0.00 3.16
3801 10736 9.825972 CTATTTATACATGAAACCATTTAGCGG 57.174 33.333 0.00 0.00 0.00 5.52
3802 10737 2.939460 ACATGAAACCATTTAGCGGC 57.061 45.000 0.00 0.00 0.00 6.53
3803 10738 2.166829 ACATGAAACCATTTAGCGGCA 58.833 42.857 0.00 0.00 0.00 5.69
3804 10739 2.094752 ACATGAAACCATTTAGCGGCAC 60.095 45.455 0.00 0.00 0.00 5.01
3805 10740 0.885196 TGAAACCATTTAGCGGCACC 59.115 50.000 1.45 0.00 0.00 5.01
3806 10741 0.172578 GAAACCATTTAGCGGCACCC 59.827 55.000 1.45 0.00 0.00 4.61
3807 10742 0.251608 AAACCATTTAGCGGCACCCT 60.252 50.000 1.45 0.00 0.00 4.34
3808 10743 0.965363 AACCATTTAGCGGCACCCTG 60.965 55.000 1.45 0.00 0.00 4.45
3809 10744 2.774799 CCATTTAGCGGCACCCTGC 61.775 63.158 1.45 0.00 44.08 4.85
3810 10745 1.750399 CATTTAGCGGCACCCTGCT 60.750 57.895 1.45 2.32 44.28 4.24
3817 10752 3.369921 GGCACCCTGCTGAAAAGG 58.630 61.111 0.00 0.00 44.28 3.11
3818 10753 2.653115 GCACCCTGCTGAAAAGGC 59.347 61.111 0.00 0.00 40.96 4.35
3819 10754 1.905354 GCACCCTGCTGAAAAGGCT 60.905 57.895 0.00 0.00 40.96 4.58
3820 10755 0.609131 GCACCCTGCTGAAAAGGCTA 60.609 55.000 0.00 0.00 40.96 3.93
3821 10756 1.957113 GCACCCTGCTGAAAAGGCTAT 60.957 52.381 0.00 0.00 40.96 2.97
3822 10757 2.683742 GCACCCTGCTGAAAAGGCTATA 60.684 50.000 0.00 0.00 40.96 1.31
3823 10758 3.209410 CACCCTGCTGAAAAGGCTATAG 58.791 50.000 0.00 0.00 33.07 1.31
3824 10759 2.225467 CCCTGCTGAAAAGGCTATAGC 58.775 52.381 16.78 16.78 41.14 2.97
3825 10760 2.421952 CCCTGCTGAAAAGGCTATAGCA 60.422 50.000 25.53 12.30 44.36 3.49
3826 10761 3.484407 CCTGCTGAAAAGGCTATAGCAT 58.516 45.455 25.53 17.00 42.74 3.79
3827 10762 3.252701 CCTGCTGAAAAGGCTATAGCATG 59.747 47.826 25.53 8.08 42.74 4.06
3828 10763 3.216800 TGCTGAAAAGGCTATAGCATGG 58.783 45.455 25.53 9.07 44.36 3.66
3829 10764 2.030451 GCTGAAAAGGCTATAGCATGGC 60.030 50.000 25.53 14.30 44.36 4.40
3830 10765 3.484407 CTGAAAAGGCTATAGCATGGCT 58.516 45.455 25.53 10.92 44.36 4.75
3831 10766 4.645535 CTGAAAAGGCTATAGCATGGCTA 58.354 43.478 25.53 6.75 45.55 3.93
3839 10774 2.286826 TAGCATGGCTATAGCGGGG 58.713 57.895 18.30 10.64 43.26 5.73
3840 10775 1.899437 TAGCATGGCTATAGCGGGGC 61.899 60.000 18.30 18.97 43.26 5.80
3841 10776 3.072476 CATGGCTATAGCGGGGCT 58.928 61.111 18.30 0.00 43.26 5.19
3842 10777 1.899437 GCATGGCTATAGCGGGGCTA 61.899 60.000 18.30 0.00 45.55 3.93
3863 10798 7.845066 GCTATAGCCGGCTATTTAAAACTAT 57.155 36.000 44.65 26.21 39.65 2.12
3864 10799 7.685594 GCTATAGCCGGCTATTTAAAACTATG 58.314 38.462 44.65 24.19 39.65 2.23
3865 10800 7.548075 GCTATAGCCGGCTATTTAAAACTATGA 59.452 37.037 44.65 25.48 39.65 2.15
3866 10801 9.601217 CTATAGCCGGCTATTTAAAACTATGAT 57.399 33.333 44.65 25.13 39.65 2.45
3867 10802 8.863872 ATAGCCGGCTATTTAAAACTATGATT 57.136 30.769 37.79 15.38 35.92 2.57
3868 10803 6.970484 AGCCGGCTATTTAAAACTATGATTG 58.030 36.000 31.86 0.00 0.00 2.67
3869 10804 6.546034 AGCCGGCTATTTAAAACTATGATTGT 59.454 34.615 31.86 0.00 0.00 2.71
3870 10805 6.636850 GCCGGCTATTTAAAACTATGATTGTG 59.363 38.462 22.15 0.00 0.00 3.33
3871 10806 7.681065 GCCGGCTATTTAAAACTATGATTGTGT 60.681 37.037 22.15 0.00 0.00 3.72
3872 10807 8.188139 CCGGCTATTTAAAACTATGATTGTGTT 58.812 33.333 0.00 0.00 0.00 3.32
3873 10808 9.567848 CGGCTATTTAAAACTATGATTGTGTTT 57.432 29.630 0.00 0.00 35.71 2.83
3916 10851 2.094659 CGGCAGCCGTGTAGTCAAG 61.095 63.158 26.69 0.00 42.73 3.02
3917 10852 1.004918 GGCAGCCGTGTAGTCAAGT 60.005 57.895 0.00 0.00 0.00 3.16
3919 10854 0.319555 GCAGCCGTGTAGTCAAGTGA 60.320 55.000 0.00 0.00 0.00 3.41
3920 10855 1.419374 CAGCCGTGTAGTCAAGTGAC 58.581 55.000 3.12 3.12 45.08 3.67
3945 10880 2.232452 ACAGCTTCTATGTGACTTCGCT 59.768 45.455 0.00 0.00 0.00 4.93
3954 11090 7.329588 TCTATGTGACTTCGCTACTAAATGA 57.670 36.000 0.00 0.00 0.00 2.57
4029 11170 3.657038 TAGAGGAAGGGAGCGCCGT 62.657 63.158 2.29 0.00 33.83 5.68
4154 11296 1.573829 CGTTCATGGTTCCCGTGGTG 61.574 60.000 2.79 0.00 40.65 4.17
4167 11309 1.291877 CGTGGTGCTGCTGTTAGTCC 61.292 60.000 0.00 0.00 0.00 3.85
4248 11393 8.148351 ACACAGACTCAAGTACAATAGCTTTAA 58.852 33.333 0.00 0.00 0.00 1.52
4282 11427 8.246430 AGTACATCCATTAGAACGATAAAGGA 57.754 34.615 0.00 0.00 37.05 3.36
4382 11527 9.162764 GTGTATATATTGCTCGGGTAATTGATT 57.837 33.333 3.26 0.00 0.00 2.57
4388 11533 3.559655 TGCTCGGGTAATTGATTGATTCG 59.440 43.478 0.00 0.00 0.00 3.34
4396 11541 2.595124 TTGATTGATTCGCCGCTAGA 57.405 45.000 0.00 0.00 0.00 2.43
4402 11547 3.446310 TGATTCGCCGCTAGATTTACA 57.554 42.857 0.00 0.00 0.00 2.41
4403 11548 3.990092 TGATTCGCCGCTAGATTTACAT 58.010 40.909 0.00 0.00 0.00 2.29
4409 11554 8.718102 ATTCGCCGCTAGATTTACATATAAAT 57.282 30.769 0.00 0.00 42.55 1.40
4410 11555 7.520119 TCGCCGCTAGATTTACATATAAATG 57.480 36.000 0.00 0.00 40.42 2.32
4415 11560 9.639601 CCGCTAGATTTACATATAAATGTCTCA 57.360 33.333 0.00 0.00 42.92 3.27
4450 11595 0.864455 GTTCTCACTGACTGCACTGC 59.136 55.000 0.00 0.00 0.00 4.40
4459 11604 0.670546 GACTGCACTGCGAGGCTTAA 60.671 55.000 0.00 0.00 0.00 1.85
4492 11637 8.404000 GTCACTGATGATATTTTCTTGCTGATT 58.596 33.333 0.00 0.00 37.14 2.57
4493 11638 8.618677 TCACTGATGATATTTTCTTGCTGATTC 58.381 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
507 548 1.616921 CGTCCCCCTACCTCCACTA 59.383 63.158 0.00 0.00 0.00 2.74
544 592 2.045536 CCCTGAACAGCAGCCCTC 60.046 66.667 0.00 0.00 43.50 4.30
586 653 3.481559 TTGAGATCTGACCCCTTCTCT 57.518 47.619 0.00 0.00 36.43 3.10
614 681 1.065701 CGAGATCGGACCCTAGTTGTG 59.934 57.143 0.00 0.00 35.37 3.33
616 683 1.676746 TCGAGATCGGACCCTAGTTG 58.323 55.000 1.91 0.00 40.29 3.16
627 694 2.126914 AGCGGAGAAAATCGAGATCG 57.873 50.000 0.00 0.00 41.45 3.69
642 709 2.603652 CGTGTTTTGACCCTTTTAGCGG 60.604 50.000 0.00 0.00 0.00 5.52
686 753 2.025441 TTGTGGTTGAAAGCGCGC 59.975 55.556 26.66 26.66 39.60 6.86
687 754 1.063327 TGTTGTGGTTGAAAGCGCG 59.937 52.632 0.00 0.00 39.60 6.86
688 755 0.869880 GGTGTTGTGGTTGAAAGCGC 60.870 55.000 0.00 0.00 37.42 5.92
689 756 0.453793 TGGTGTTGTGGTTGAAAGCG 59.546 50.000 0.00 0.00 0.00 4.68
690 757 1.203523 TGTGGTGTTGTGGTTGAAAGC 59.796 47.619 0.00 0.00 0.00 3.51
691 758 2.230025 TGTGTGGTGTTGTGGTTGAAAG 59.770 45.455 0.00 0.00 0.00 2.62
692 759 2.029828 GTGTGTGGTGTTGTGGTTGAAA 60.030 45.455 0.00 0.00 0.00 2.69
693 760 1.542030 GTGTGTGGTGTTGTGGTTGAA 59.458 47.619 0.00 0.00 0.00 2.69
695 762 1.132262 GAGTGTGTGGTGTTGTGGTTG 59.868 52.381 0.00 0.00 0.00 3.77
696 763 1.004277 AGAGTGTGTGGTGTTGTGGTT 59.996 47.619 0.00 0.00 0.00 3.67
697 764 0.618458 AGAGTGTGTGGTGTTGTGGT 59.382 50.000 0.00 0.00 0.00 4.16
698 765 1.299541 GAGAGTGTGTGGTGTTGTGG 58.700 55.000 0.00 0.00 0.00 4.17
699 766 0.930310 CGAGAGTGTGTGGTGTTGTG 59.070 55.000 0.00 0.00 0.00 3.33
700 767 0.810031 GCGAGAGTGTGTGGTGTTGT 60.810 55.000 0.00 0.00 0.00 3.32
701 768 1.498865 GGCGAGAGTGTGTGGTGTTG 61.499 60.000 0.00 0.00 0.00 3.33
703 770 2.421739 GGCGAGAGTGTGTGGTGT 59.578 61.111 0.00 0.00 0.00 4.16
705 772 2.842462 TGGGCGAGAGTGTGTGGT 60.842 61.111 0.00 0.00 0.00 4.16
706 773 2.047844 CTGGGCGAGAGTGTGTGG 60.048 66.667 0.00 0.00 0.00 4.17
707 774 2.740055 GCTGGGCGAGAGTGTGTG 60.740 66.667 0.00 0.00 0.00 3.82
710 777 2.500815 TAGGAGCTGGGCGAGAGTGT 62.501 60.000 0.00 0.00 0.00 3.55
711 778 1.733402 CTAGGAGCTGGGCGAGAGTG 61.733 65.000 0.00 0.00 0.00 3.51
712 779 1.454847 CTAGGAGCTGGGCGAGAGT 60.455 63.158 0.00 0.00 0.00 3.24
713 780 2.199652 CCTAGGAGCTGGGCGAGAG 61.200 68.421 1.05 0.00 0.00 3.20
714 781 2.123683 CCTAGGAGCTGGGCGAGA 60.124 66.667 1.05 0.00 0.00 4.04
715 782 3.230245 CCCTAGGAGCTGGGCGAG 61.230 72.222 11.48 0.00 36.61 5.03
716 783 4.860881 CCCCTAGGAGCTGGGCGA 62.861 72.222 11.48 0.00 42.03 5.54
720 787 4.860881 TCCGCCCCTAGGAGCTGG 62.861 72.222 14.01 15.43 33.19 4.85
721 788 2.143419 AATCCGCCCCTAGGAGCTG 61.143 63.158 14.01 7.06 41.66 4.24
722 789 2.143419 CAATCCGCCCCTAGGAGCT 61.143 63.158 14.01 0.00 41.66 4.09
723 790 2.105806 CTCAATCCGCCCCTAGGAGC 62.106 65.000 11.48 8.07 41.66 4.70
724 791 2.053618 CTCAATCCGCCCCTAGGAG 58.946 63.158 11.48 0.00 41.66 3.69
725 792 2.140792 GCTCAATCCGCCCCTAGGA 61.141 63.158 11.48 0.00 42.69 2.94
726 793 2.427753 GCTCAATCCGCCCCTAGG 59.572 66.667 0.06 0.06 0.00 3.02
728 795 4.235762 GCGCTCAATCCGCCCCTA 62.236 66.667 0.00 0.00 45.30 3.53
735 802 3.567797 GAGGCACGCGCTCAATCC 61.568 66.667 5.73 0.00 38.60 3.01
749 816 4.148825 CAGGGGAAGGCGACGAGG 62.149 72.222 0.00 0.00 0.00 4.63
750 817 3.068691 TCAGGGGAAGGCGACGAG 61.069 66.667 0.00 0.00 0.00 4.18
752 819 4.796231 CGTCAGGGGAAGGCGACG 62.796 72.222 0.00 0.00 44.34 5.12
763 830 2.398554 CCAAATCCACGCCGTCAGG 61.399 63.158 0.00 0.00 41.62 3.86
764 831 1.375396 TCCAAATCCACGCCGTCAG 60.375 57.895 0.00 0.00 0.00 3.51
766 833 2.736682 CGTCCAAATCCACGCCGTC 61.737 63.158 0.00 0.00 0.00 4.79
767 834 2.740826 CGTCCAAATCCACGCCGT 60.741 61.111 0.00 0.00 0.00 5.68
768 835 2.433491 TCGTCCAAATCCACGCCG 60.433 61.111 0.00 0.00 35.93 6.46
769 836 2.750888 GCTCGTCCAAATCCACGCC 61.751 63.158 0.00 0.00 35.93 5.68
770 837 1.696832 GAGCTCGTCCAAATCCACGC 61.697 60.000 0.00 0.00 35.93 5.34
773 840 0.173481 CTCGAGCTCGTCCAAATCCA 59.827 55.000 33.33 11.82 40.80 3.41
774 841 1.148759 GCTCGAGCTCGTCCAAATCC 61.149 60.000 33.33 11.55 40.80 3.01
775 842 2.292803 GCTCGAGCTCGTCCAAATC 58.707 57.895 33.33 7.90 40.80 2.17
786 853 2.029844 GTTGGTGGACAGCTCGAGC 61.030 63.158 30.01 30.01 42.49 5.03
787 854 0.668706 CTGTTGGTGGACAGCTCGAG 60.669 60.000 8.45 8.45 40.43 4.04
795 862 1.374758 CTCCTCGCTGTTGGTGGAC 60.375 63.158 0.00 0.00 0.00 4.02
796 863 1.837051 ACTCCTCGCTGTTGGTGGA 60.837 57.895 0.00 0.00 0.00 4.02
797 864 1.669115 CACTCCTCGCTGTTGGTGG 60.669 63.158 0.00 0.00 0.00 4.61
799 866 2.743718 CCACTCCTCGCTGTTGGT 59.256 61.111 0.00 0.00 0.00 3.67
800 867 2.743928 GCCACTCCTCGCTGTTGG 60.744 66.667 0.00 0.00 0.00 3.77
802 869 2.031163 GTGCCACTCCTCGCTGTT 59.969 61.111 0.00 0.00 0.00 3.16
803 870 2.721971 CTTGTGCCACTCCTCGCTGT 62.722 60.000 0.00 0.00 0.00 4.40
804 871 2.031012 TTGTGCCACTCCTCGCTG 59.969 61.111 0.00 0.00 0.00 5.18
805 872 1.758440 TTCTTGTGCCACTCCTCGCT 61.758 55.000 0.00 0.00 0.00 4.93
806 873 0.674895 ATTCTTGTGCCACTCCTCGC 60.675 55.000 0.00 0.00 0.00 5.03
807 874 1.734465 GAATTCTTGTGCCACTCCTCG 59.266 52.381 0.00 0.00 0.00 4.63
808 875 2.783135 TGAATTCTTGTGCCACTCCTC 58.217 47.619 7.05 0.00 0.00 3.71
811 878 4.771590 TGAATGAATTCTTGTGCCACTC 57.228 40.909 7.05 0.00 37.67 3.51
812 879 4.081862 CCATGAATGAATTCTTGTGCCACT 60.082 41.667 7.05 0.00 39.15 4.00
813 880 4.178540 CCATGAATGAATTCTTGTGCCAC 58.821 43.478 7.05 0.00 39.15 5.01
814 881 3.368635 GCCATGAATGAATTCTTGTGCCA 60.369 43.478 7.05 0.00 39.15 4.92
817 884 4.328983 GCAAGCCATGAATGAATTCTTGTG 59.671 41.667 7.05 9.37 39.15 3.33
818 885 4.020928 TGCAAGCCATGAATGAATTCTTGT 60.021 37.500 7.05 0.00 39.15 3.16
819 886 4.500127 TGCAAGCCATGAATGAATTCTTG 58.500 39.130 7.05 10.47 39.97 3.02
821 888 4.499188 CGATGCAAGCCATGAATGAATTCT 60.499 41.667 7.05 0.00 37.67 2.40
826 3832 1.672363 GTCGATGCAAGCCATGAATGA 59.328 47.619 0.00 0.00 33.29 2.57
847 3853 9.121658 GTACCCCATTTTCCAATTTAAAAACAA 57.878 29.630 0.00 0.00 30.20 2.83
854 3860 4.675038 ACCGTACCCCATTTTCCAATTTA 58.325 39.130 0.00 0.00 0.00 1.40
871 3877 8.894768 ATTTGAAATTTGAATCCAAAACCGTA 57.105 26.923 0.00 0.00 44.49 4.02
905 3912 0.096976 GCTGTGTGTGTGTGTGTGAC 59.903 55.000 0.00 0.00 0.00 3.67
957 3974 4.389576 CTGCGACTTTGCGTGCCC 62.390 66.667 0.00 0.00 37.81 5.36
959 3976 2.127609 GTCTGCGACTTTGCGTGC 60.128 61.111 0.00 0.00 37.81 5.34
960 3977 1.202568 CTGTCTGCGACTTTGCGTG 59.797 57.895 9.49 0.00 37.81 5.34
961 3978 1.956170 CCTGTCTGCGACTTTGCGT 60.956 57.895 9.49 0.00 37.81 5.24
962 3979 1.956170 ACCTGTCTGCGACTTTGCG 60.956 57.895 9.49 0.00 37.81 4.85
963 3980 1.160329 ACACCTGTCTGCGACTTTGC 61.160 55.000 9.49 0.00 33.15 3.68
964 3981 1.792949 GTACACCTGTCTGCGACTTTG 59.207 52.381 9.49 6.69 33.15 2.77
981 4010 1.267121 TTGGCTCCTGGAGACTGTAC 58.733 55.000 28.95 9.44 38.75 2.90
1028 4057 1.732732 CGTAGCCTGTACACTGCAGTC 60.733 57.143 18.64 6.75 32.41 3.51
1147 4176 2.439701 CGGTAGGTGCGAGGAGGA 60.440 66.667 0.00 0.00 0.00 3.71
1160 4189 3.943691 GGGTGTGGTGGCACGGTA 61.944 66.667 12.17 0.00 40.08 4.02
1372 4443 2.895680 GGAGATGCTGGAGACGCA 59.104 61.111 0.00 0.00 42.31 5.24
1527 4631 3.917760 CAGGACTCGCGGGGATCC 61.918 72.222 12.42 9.64 0.00 3.36
1528 4632 3.917760 CCAGGACTCGCGGGGATC 61.918 72.222 12.42 0.00 0.00 3.36
1529 4633 3.976490 TTCCAGGACTCGCGGGGAT 62.976 63.158 12.42 0.00 0.00 3.85
1530 4634 4.689549 TTCCAGGACTCGCGGGGA 62.690 66.667 12.42 3.63 0.00 4.81
1531 4635 4.452733 GTTCCAGGACTCGCGGGG 62.453 72.222 12.42 4.49 0.00 5.73
1532 4636 4.452733 GGTTCCAGGACTCGCGGG 62.453 72.222 3.27 3.27 0.00 6.13
1533 4637 3.358076 GAGGTTCCAGGACTCGCGG 62.358 68.421 6.13 0.00 0.00 6.46
1534 4638 2.182030 GAGGTTCCAGGACTCGCG 59.818 66.667 0.00 0.00 0.00 5.87
1535 4639 1.079750 GTGAGGTTCCAGGACTCGC 60.080 63.158 5.16 5.16 35.01 5.03
1536 4640 1.592223 GGTGAGGTTCCAGGACTCG 59.408 63.158 0.00 0.00 34.03 4.18
1537 4641 1.592223 CGGTGAGGTTCCAGGACTC 59.408 63.158 0.00 0.00 0.00 3.36
1538 4642 2.584391 GCGGTGAGGTTCCAGGACT 61.584 63.158 0.00 0.00 0.00 3.85
1539 4643 2.047179 GCGGTGAGGTTCCAGGAC 60.047 66.667 0.00 0.00 0.00 3.85
1540 4644 3.319198 GGCGGTGAGGTTCCAGGA 61.319 66.667 0.00 0.00 0.00 3.86
1541 4645 4.760047 CGGCGGTGAGGTTCCAGG 62.760 72.222 0.00 0.00 0.00 4.45
1542 4646 3.691342 TCGGCGGTGAGGTTCCAG 61.691 66.667 7.21 0.00 0.00 3.86
1543 4647 3.998672 GTCGGCGGTGAGGTTCCA 61.999 66.667 7.21 0.00 0.00 3.53
1544 4648 3.310860 ATGTCGGCGGTGAGGTTCC 62.311 63.158 7.21 0.00 0.00 3.62
1545 4649 2.100631 CATGTCGGCGGTGAGGTTC 61.101 63.158 7.21 0.00 0.00 3.62
1546 4650 2.047274 CATGTCGGCGGTGAGGTT 60.047 61.111 7.21 0.00 0.00 3.50
1547 4651 4.082523 CCATGTCGGCGGTGAGGT 62.083 66.667 7.21 0.00 0.00 3.85
1548 4652 3.723235 CTCCATGTCGGCGGTGAGG 62.723 68.421 7.21 4.97 33.14 3.86
1549 4653 2.202797 CTCCATGTCGGCGGTGAG 60.203 66.667 7.21 2.41 33.14 3.51
1550 4654 3.770040 CCTCCATGTCGGCGGTGA 61.770 66.667 7.21 0.00 34.60 4.02
1555 4659 4.899239 CTCGGCCTCCATGTCGGC 62.899 72.222 12.71 12.71 45.55 5.54
1556 4660 4.899239 GCTCGGCCTCCATGTCGG 62.899 72.222 0.00 0.00 0.00 4.79
1777 4896 2.113139 AAGCACCAACTCCCACCG 59.887 61.111 0.00 0.00 0.00 4.94
1864 4983 2.997897 GTCGACCCACCAGAGCCT 60.998 66.667 3.51 0.00 0.00 4.58
1866 4985 2.997897 AGGTCGACCCACCAGAGC 60.998 66.667 30.82 2.55 39.16 4.09
2402 7302 1.514087 GTGACCGATTACCTGCCGA 59.486 57.895 0.00 0.00 0.00 5.54
2416 7316 3.999663 CTCAATCAGAACAAGGAGGTGAC 59.000 47.826 0.00 0.00 0.00 3.67
2458 7378 1.199789 CAGCACTCGCAGCCAAATTTA 59.800 47.619 0.00 0.00 42.27 1.40
2500 7442 3.525537 AGACGGTGTAAGCAGATCAATG 58.474 45.455 0.00 0.00 0.00 2.82
2550 7496 3.754850 TGCTTGAGTGAACGCTACTAGTA 59.245 43.478 1.89 1.89 0.00 1.82
2551 7497 2.557056 TGCTTGAGTGAACGCTACTAGT 59.443 45.455 0.00 0.00 0.00 2.57
2552 7498 3.217599 TGCTTGAGTGAACGCTACTAG 57.782 47.619 0.00 0.00 0.00 2.57
2733 7909 7.318141 ACTGTTTATCAATTTCAGGCAATGAG 58.682 34.615 0.00 0.00 39.68 2.90
2780 7956 4.330074 CGTCCTGTGAATGAACATAGTTCC 59.670 45.833 7.36 0.00 0.00 3.62
2800 7976 9.746711 GATTGAAATAACATGCATAGATACGTC 57.253 33.333 0.00 0.00 0.00 4.34
2917 9830 6.857964 CAGGAGTGCTTATGTAAAAACAACAG 59.142 38.462 0.00 0.00 0.00 3.16
2953 9871 3.208747 ACTTGGGTGGTCAGTTAACTG 57.791 47.619 26.60 26.60 45.08 3.16
3163 10090 3.751175 TGTTTTACTTCAGATGCCCTTCG 59.249 43.478 0.00 0.00 0.00 3.79
3274 10207 6.816640 TCAGAAATAATACCCGTAGCATATGC 59.183 38.462 20.36 20.36 42.49 3.14
3342 10275 9.340695 TCAACATAATTACGAAAAAGAAGCATG 57.659 29.630 0.00 0.00 0.00 4.06
3369 10302 5.766150 TTCGGTTTGGGCAATTAGATATG 57.234 39.130 0.00 0.00 0.00 1.78
3416 10349 4.641989 CCTACAATGGGAGAAAACATCAGG 59.358 45.833 0.00 0.00 0.00 3.86
3465 10398 1.378882 CGTTGATGATGGCCCAGTGG 61.379 60.000 0.63 0.63 0.00 4.00
3532 10465 7.551585 ACAAACTACATCAGAATCTACTCTGG 58.448 38.462 1.03 0.00 42.68 3.86
3544 10477 7.730364 AGTAAAACAGGACAAACTACATCAG 57.270 36.000 0.00 0.00 0.00 2.90
3556 10490 9.469807 CTAGATCATGACATAGTAAAACAGGAC 57.530 37.037 0.00 0.00 0.00 3.85
3571 10506 9.155975 TCTTAAACAGAAAAGCTAGATCATGAC 57.844 33.333 0.00 0.00 0.00 3.06
3602 10537 2.035704 AGCATGCTCTCGAAGACTATGG 59.964 50.000 16.30 0.00 0.00 2.74
3668 10603 3.003275 CACAATTCAACGCTACCAACACT 59.997 43.478 0.00 0.00 0.00 3.55
3679 10614 9.913451 ATTTAAAACATTGAACACAATTCAACG 57.087 25.926 4.31 0.00 40.70 4.10
3686 10621 6.642950 CCCGCTATTTAAAACATTGAACACAA 59.357 34.615 0.00 0.00 0.00 3.33
3687 10622 6.153067 CCCGCTATTTAAAACATTGAACACA 58.847 36.000 0.00 0.00 0.00 3.72
3693 10628 5.402270 GCATAGCCCGCTATTTAAAACATTG 59.598 40.000 6.48 0.00 37.16 2.82
3694 10629 5.508994 GGCATAGCCCGCTATTTAAAACATT 60.509 40.000 6.48 0.00 44.06 2.71
3695 10630 4.022329 GGCATAGCCCGCTATTTAAAACAT 60.022 41.667 6.48 0.00 44.06 2.71
3696 10631 3.316868 GGCATAGCCCGCTATTTAAAACA 59.683 43.478 6.48 0.00 44.06 2.83
3697 10632 3.897325 GGCATAGCCCGCTATTTAAAAC 58.103 45.455 6.48 0.00 44.06 2.43
3717 10652 1.887707 GAGGTCCGCCGCTATTTGG 60.888 63.158 0.00 0.00 40.50 3.28
3718 10653 0.742990 TTGAGGTCCGCCGCTATTTG 60.743 55.000 0.00 0.00 40.50 2.32
3719 10654 0.035820 TTTGAGGTCCGCCGCTATTT 60.036 50.000 0.00 0.00 40.50 1.40
3720 10655 0.035820 TTTTGAGGTCCGCCGCTATT 60.036 50.000 0.00 0.00 40.50 1.73
3721 10656 0.180406 ATTTTGAGGTCCGCCGCTAT 59.820 50.000 0.00 0.00 40.50 2.97
3722 10657 0.461339 GATTTTGAGGTCCGCCGCTA 60.461 55.000 0.00 0.00 40.50 4.26
3723 10658 1.745489 GATTTTGAGGTCCGCCGCT 60.745 57.895 0.00 0.00 40.50 5.52
3724 10659 1.982073 CTGATTTTGAGGTCCGCCGC 61.982 60.000 0.00 0.00 40.50 6.53
3725 10660 1.982073 GCTGATTTTGAGGTCCGCCG 61.982 60.000 0.00 0.00 40.50 6.46
3726 10661 0.678048 AGCTGATTTTGAGGTCCGCC 60.678 55.000 0.00 0.00 0.00 6.13
3727 10662 2.024176 TAGCTGATTTTGAGGTCCGC 57.976 50.000 0.00 0.00 0.00 5.54
3728 10663 3.743396 GCTATAGCTGATTTTGAGGTCCG 59.257 47.826 17.75 0.00 38.21 4.79
3729 10664 3.743396 CGCTATAGCTGATTTTGAGGTCC 59.257 47.826 21.98 0.00 39.32 4.46
3730 10665 3.743396 CCGCTATAGCTGATTTTGAGGTC 59.257 47.826 21.98 0.00 39.32 3.85
3731 10666 3.495100 CCCGCTATAGCTGATTTTGAGGT 60.495 47.826 21.98 0.00 39.32 3.85
3732 10667 3.070018 CCCGCTATAGCTGATTTTGAGG 58.930 50.000 21.98 11.98 39.32 3.86
3733 10668 3.070018 CCCCGCTATAGCTGATTTTGAG 58.930 50.000 21.98 3.56 39.32 3.02
3734 10669 2.810400 GCCCCGCTATAGCTGATTTTGA 60.810 50.000 21.98 0.00 39.32 2.69
3735 10670 1.537202 GCCCCGCTATAGCTGATTTTG 59.463 52.381 21.98 4.97 39.32 2.44
3736 10671 1.421646 AGCCCCGCTATAGCTGATTTT 59.578 47.619 21.98 1.40 36.99 1.82
3737 10672 1.059913 AGCCCCGCTATAGCTGATTT 58.940 50.000 21.98 2.94 36.99 2.17
3738 10673 1.938585 TAGCCCCGCTATAGCTGATT 58.061 50.000 21.98 7.51 40.44 2.57
3739 10674 3.691820 TAGCCCCGCTATAGCTGAT 57.308 52.632 21.98 11.60 40.44 2.90
3747 10682 2.678934 CCCGCTATAGCCCCGCTA 60.679 66.667 19.00 0.00 45.55 4.26
3750 10685 0.754217 TATAGCCCGCTATAGCCCCG 60.754 60.000 19.00 7.48 39.65 5.73
3751 10686 1.041437 CTATAGCCCGCTATAGCCCC 58.959 60.000 23.85 7.40 46.26 5.80
3756 10691 3.367646 AGTCTGCTATAGCCCGCTATA 57.632 47.619 21.84 14.20 39.65 1.31
3757 10692 2.223803 AGTCTGCTATAGCCCGCTAT 57.776 50.000 21.84 13.46 41.58 2.97
3758 10693 2.873094 TAGTCTGCTATAGCCCGCTA 57.127 50.000 21.84 16.22 41.18 4.26
3759 10694 2.223803 ATAGTCTGCTATAGCCCGCT 57.776 50.000 21.84 17.13 41.18 5.52
3760 10695 3.320673 AAATAGTCTGCTATAGCCCGC 57.679 47.619 21.84 11.17 41.18 6.13
3761 10696 7.096884 TGTATAAATAGTCTGCTATAGCCCG 57.903 40.000 21.84 12.82 41.18 6.13
3762 10697 8.696374 TCATGTATAAATAGTCTGCTATAGCCC 58.304 37.037 21.84 9.81 41.18 5.19
3769 10704 9.632638 AATGGTTTCATGTATAAATAGTCTGCT 57.367 29.630 0.00 0.00 33.18 4.24
3775 10710 9.825972 CCGCTAAATGGTTTCATGTATAAATAG 57.174 33.333 0.00 0.00 33.18 1.73
3776 10711 8.293867 GCCGCTAAATGGTTTCATGTATAAATA 58.706 33.333 0.00 0.00 33.18 1.40
3777 10712 7.145323 GCCGCTAAATGGTTTCATGTATAAAT 58.855 34.615 0.00 0.00 33.18 1.40
3778 10713 6.095580 TGCCGCTAAATGGTTTCATGTATAAA 59.904 34.615 0.00 0.00 33.18 1.40
3779 10714 5.590663 TGCCGCTAAATGGTTTCATGTATAA 59.409 36.000 0.00 0.00 33.18 0.98
3780 10715 5.008217 GTGCCGCTAAATGGTTTCATGTATA 59.992 40.000 0.00 0.00 33.18 1.47
3781 10716 3.951037 TGCCGCTAAATGGTTTCATGTAT 59.049 39.130 0.00 0.00 33.18 2.29
3782 10717 3.127895 GTGCCGCTAAATGGTTTCATGTA 59.872 43.478 0.00 0.00 33.18 2.29
3783 10718 2.094752 GTGCCGCTAAATGGTTTCATGT 60.095 45.455 0.00 0.00 33.18 3.21
3784 10719 2.529151 GTGCCGCTAAATGGTTTCATG 58.471 47.619 0.00 0.00 33.18 3.07
3785 10720 1.476488 GGTGCCGCTAAATGGTTTCAT 59.524 47.619 0.00 0.00 34.56 2.57
3786 10721 0.885196 GGTGCCGCTAAATGGTTTCA 59.115 50.000 0.00 0.00 0.00 2.69
3787 10722 0.172578 GGGTGCCGCTAAATGGTTTC 59.827 55.000 0.00 0.00 0.00 2.78
3788 10723 0.251608 AGGGTGCCGCTAAATGGTTT 60.252 50.000 0.00 0.00 0.00 3.27
3789 10724 0.965363 CAGGGTGCCGCTAAATGGTT 60.965 55.000 0.00 0.00 0.00 3.67
3790 10725 1.378514 CAGGGTGCCGCTAAATGGT 60.379 57.895 0.00 0.00 0.00 3.55
3791 10726 2.774799 GCAGGGTGCCGCTAAATGG 61.775 63.158 0.00 0.00 37.42 3.16
3792 10727 1.750399 AGCAGGGTGCCGCTAAATG 60.750 57.895 0.00 0.00 46.52 2.32
3793 10728 1.750399 CAGCAGGGTGCCGCTAAAT 60.750 57.895 0.00 0.00 46.52 1.40
3794 10729 2.359850 CAGCAGGGTGCCGCTAAA 60.360 61.111 0.00 0.00 46.52 1.85
3795 10730 2.404566 TTTCAGCAGGGTGCCGCTAA 62.405 55.000 0.00 0.00 46.52 3.09
3796 10731 2.404566 TTTTCAGCAGGGTGCCGCTA 62.405 55.000 0.00 0.00 46.52 4.26
3797 10732 3.790416 TTTTCAGCAGGGTGCCGCT 62.790 57.895 0.00 0.00 46.52 5.52
3798 10733 3.273080 CTTTTCAGCAGGGTGCCGC 62.273 63.158 0.00 0.00 46.52 6.53
3799 10734 2.629656 CCTTTTCAGCAGGGTGCCG 61.630 63.158 0.00 0.00 46.52 5.69
3800 10735 2.935740 GCCTTTTCAGCAGGGTGCC 61.936 63.158 0.00 0.00 46.52 5.01
3801 10736 0.609131 TAGCCTTTTCAGCAGGGTGC 60.609 55.000 2.17 0.00 42.32 5.01
3802 10737 2.134789 ATAGCCTTTTCAGCAGGGTG 57.865 50.000 2.17 0.00 42.32 4.61
3803 10738 2.422093 GCTATAGCCTTTTCAGCAGGGT 60.422 50.000 14.13 0.00 44.56 4.34
3804 10739 2.225467 GCTATAGCCTTTTCAGCAGGG 58.775 52.381 14.13 0.00 34.31 4.45
3805 10740 2.923121 TGCTATAGCCTTTTCAGCAGG 58.077 47.619 21.84 0.00 37.32 4.85
3806 10741 3.252701 CCATGCTATAGCCTTTTCAGCAG 59.747 47.826 21.84 0.00 44.73 4.24
3807 10742 3.216800 CCATGCTATAGCCTTTTCAGCA 58.783 45.455 21.84 2.67 45.51 4.41
3808 10743 2.030451 GCCATGCTATAGCCTTTTCAGC 60.030 50.000 21.84 10.92 41.18 4.26
3809 10744 3.484407 AGCCATGCTATAGCCTTTTCAG 58.516 45.455 21.84 5.16 36.99 3.02
3810 10745 3.582998 AGCCATGCTATAGCCTTTTCA 57.417 42.857 21.84 2.30 36.99 2.69
3821 10756 1.899437 GCCCCGCTATAGCCATGCTA 61.899 60.000 19.00 0.00 45.55 3.49
3822 10757 3.072476 CCCCGCTATAGCCATGCT 58.928 61.111 19.00 0.00 43.41 3.79
3823 10758 1.899437 TAGCCCCGCTATAGCCATGC 61.899 60.000 19.00 16.98 40.44 4.06
3824 10759 2.286826 TAGCCCCGCTATAGCCATG 58.713 57.895 19.00 8.23 40.44 3.66
3825 10760 4.887957 TAGCCCCGCTATAGCCAT 57.112 55.556 19.00 3.44 40.44 4.40
3839 10774 7.548075 TCATAGTTTTAAATAGCCGGCTATAGC 59.452 37.037 41.53 29.09 38.20 2.97
3840 10775 8.997621 TCATAGTTTTAAATAGCCGGCTATAG 57.002 34.615 41.53 22.50 38.20 1.31
3841 10776 9.953565 AATCATAGTTTTAAATAGCCGGCTATA 57.046 29.630 41.53 28.18 38.20 1.31
3842 10777 8.730680 CAATCATAGTTTTAAATAGCCGGCTAT 58.269 33.333 37.79 37.79 40.63 2.97
3843 10778 7.717875 ACAATCATAGTTTTAAATAGCCGGCTA 59.282 33.333 36.88 36.88 0.00 3.93
3844 10779 6.546034 ACAATCATAGTTTTAAATAGCCGGCT 59.454 34.615 34.85 34.85 0.00 5.52
3845 10780 6.636850 CACAATCATAGTTTTAAATAGCCGGC 59.363 38.462 21.89 21.89 0.00 6.13
3846 10781 7.703328 ACACAATCATAGTTTTAAATAGCCGG 58.297 34.615 0.00 0.00 0.00 6.13
3847 10782 9.567848 AAACACAATCATAGTTTTAAATAGCCG 57.432 29.630 0.00 0.00 31.95 5.52
3855 10790 9.535878 GGTTTTCCAAACACAATCATAGTTTTA 57.464 29.630 2.00 0.00 40.31 1.52
3856 10791 8.264347 AGGTTTTCCAAACACAATCATAGTTTT 58.736 29.630 2.00 0.00 43.73 2.43
3857 10792 7.791029 AGGTTTTCCAAACACAATCATAGTTT 58.209 30.769 2.00 0.00 43.73 2.66
3858 10793 7.360113 AGGTTTTCCAAACACAATCATAGTT 57.640 32.000 2.00 0.00 43.73 2.24
3859 10794 6.293955 CGAGGTTTTCCAAACACAATCATAGT 60.294 38.462 2.00 0.00 43.73 2.12
3860 10795 6.086222 CGAGGTTTTCCAAACACAATCATAG 58.914 40.000 2.00 0.00 43.73 2.23
3861 10796 5.048364 CCGAGGTTTTCCAAACACAATCATA 60.048 40.000 2.00 0.00 43.73 2.15
3862 10797 4.261994 CCGAGGTTTTCCAAACACAATCAT 60.262 41.667 2.00 0.00 43.73 2.45
3863 10798 3.067461 CCGAGGTTTTCCAAACACAATCA 59.933 43.478 2.00 0.00 43.73 2.57
3864 10799 3.638484 CCGAGGTTTTCCAAACACAATC 58.362 45.455 2.00 0.00 43.73 2.67
3865 10800 2.223947 GCCGAGGTTTTCCAAACACAAT 60.224 45.455 2.00 0.00 43.73 2.71
3866 10801 1.135333 GCCGAGGTTTTCCAAACACAA 59.865 47.619 2.00 0.00 43.73 3.33
3867 10802 0.741915 GCCGAGGTTTTCCAAACACA 59.258 50.000 2.00 0.00 43.73 3.72
3868 10803 0.031585 GGCCGAGGTTTTCCAAACAC 59.968 55.000 0.00 0.00 43.73 3.32
3869 10804 0.106419 AGGCCGAGGTTTTCCAAACA 60.106 50.000 0.00 0.00 43.73 2.83
3870 10805 0.596577 GAGGCCGAGGTTTTCCAAAC 59.403 55.000 0.00 0.00 43.73 2.93
3871 10806 0.887387 CGAGGCCGAGGTTTTCCAAA 60.887 55.000 0.00 0.00 43.73 3.28
3872 10807 1.302192 CGAGGCCGAGGTTTTCCAA 60.302 57.895 0.00 0.00 43.73 3.53
3873 10808 2.345991 CGAGGCCGAGGTTTTCCA 59.654 61.111 0.00 0.00 43.73 3.53
3916 10851 4.859798 GTCACATAGAAGCTGTGTAGTCAC 59.140 45.833 3.31 0.00 43.53 3.67
3917 10852 4.767409 AGTCACATAGAAGCTGTGTAGTCA 59.233 41.667 3.31 0.00 43.53 3.41
3919 10854 5.620205 CGAAGTCACATAGAAGCTGTGTAGT 60.620 44.000 3.31 0.00 43.53 2.73
3920 10855 4.795795 CGAAGTCACATAGAAGCTGTGTAG 59.204 45.833 3.31 0.00 43.53 2.74
3921 10856 4.733850 CGAAGTCACATAGAAGCTGTGTA 58.266 43.478 3.31 0.00 43.53 2.90
3922 10857 3.579709 CGAAGTCACATAGAAGCTGTGT 58.420 45.455 3.31 0.00 43.53 3.72
3923 10858 2.346847 GCGAAGTCACATAGAAGCTGTG 59.653 50.000 0.00 0.00 44.26 3.66
3931 10866 6.972901 TGTCATTTAGTAGCGAAGTCACATAG 59.027 38.462 0.00 0.00 0.00 2.23
3938 10873 5.109903 GGTGATGTCATTTAGTAGCGAAGT 58.890 41.667 0.00 0.00 0.00 3.01
3971 11107 2.285368 TACAGGTGGGGGCAGGAG 60.285 66.667 0.00 0.00 0.00 3.69
4029 11170 2.445427 CACCTATGCAAATGGTGTGGA 58.555 47.619 20.92 0.00 44.35 4.02
4034 11175 4.207165 GGTATGACACCTATGCAAATGGT 58.793 43.478 0.00 0.00 44.79 3.55
4035 11176 4.836125 GGTATGACACCTATGCAAATGG 57.164 45.455 0.00 0.00 44.79 3.16
4154 11296 0.251165 TTTGGGGGACTAACAGCAGC 60.251 55.000 0.00 0.00 0.00 5.25
4382 11527 3.446310 TGTAAATCTAGCGGCGAATCA 57.554 42.857 12.98 0.00 0.00 2.57
4388 11533 8.480643 AGACATTTATATGTAAATCTAGCGGC 57.519 34.615 4.60 0.00 44.90 6.53
4409 11554 8.262933 AGAACACATAGAATCAATCATGAGACA 58.737 33.333 0.09 0.00 39.39 3.41
4410 11555 8.659925 AGAACACATAGAATCAATCATGAGAC 57.340 34.615 0.09 0.00 39.39 3.36
4450 11595 5.168569 TCAGTGACAAACTATTAAGCCTCG 58.831 41.667 0.00 0.00 36.83 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.