Multiple sequence alignment - TraesCS5B01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G043700 chr5B 100.000 3641 0 0 1 3641 48862075 48858435 0.000000e+00 6724
1 TraesCS5B01G043700 chr5B 95.333 150 7 0 325 474 242138552 242138701 4.700000e-59 239
2 TraesCS5B01G043700 chr5B 94.771 153 8 0 322 474 602841675 602841827 4.700000e-59 239
3 TraesCS5B01G043700 chr5D 92.659 1948 112 13 902 2842 46713057 46714980 0.000000e+00 2776
4 TraesCS5B01G043700 chr5D 88.720 461 47 5 3128 3586 510977895 510978352 3.180000e-155 558
5 TraesCS5B01G043700 chr5D 88.017 242 19 4 475 716 46688253 46688484 9.960000e-71 278
6 TraesCS5B01G043700 chr5D 86.364 176 15 7 2963 3132 9076255 9076083 2.230000e-42 183
7 TraesCS5B01G043700 chr5D 100.000 99 0 0 812 910 46711355 46711453 2.230000e-42 183
8 TraesCS5B01G043700 chr6A 90.609 2087 105 25 614 2676 99969291 99967272 0.000000e+00 2684
9 TraesCS5B01G043700 chr6A 98.693 153 2 0 325 477 136546818 136546666 4.630000e-69 272
10 TraesCS5B01G043700 chr6A 84.932 219 5 7 2 194 99972096 99971880 2.870000e-46 196
11 TraesCS5B01G043700 chr6A 88.235 136 10 2 492 621 99969745 99969610 1.350000e-34 158
12 TraesCS5B01G043700 chr6B 92.218 1722 80 11 959 2668 157864851 157863172 0.000000e+00 2388
13 TraesCS5B01G043700 chr6B 88.144 194 14 6 2948 3132 716017839 716018032 4.730000e-54 222
14 TraesCS5B01G043700 chr4A 81.935 1561 208 45 1127 2629 564951398 564952942 0.000000e+00 1253
15 TraesCS5B01G043700 chr4D 81.865 1555 214 40 1127 2629 37289601 37288063 0.000000e+00 1247
16 TraesCS5B01G043700 chr4D 84.043 658 85 17 2937 3585 19295871 19295225 1.860000e-172 616
17 TraesCS5B01G043700 chr4D 91.150 452 32 6 3128 3576 439129353 439128907 1.120000e-169 606
18 TraesCS5B01G043700 chr4D 87.831 189 16 4 2950 3132 439129488 439129301 7.920000e-52 215
19 TraesCS5B01G043700 chr4B 83.156 1407 186 30 1126 2494 54330867 54329474 0.000000e+00 1238
20 TraesCS5B01G043700 chr4B 82.633 1405 187 32 1128 2488 54517124 54518515 0.000000e+00 1190
21 TraesCS5B01G043700 chr4B 74.125 657 122 27 1998 2614 54521497 54522145 1.020000e-55 228
22 TraesCS5B01G043700 chr6D 93.651 693 37 6 2950 3641 32057486 32056800 0.000000e+00 1029
23 TraesCS5B01G043700 chr3D 80.228 966 164 22 1135 2088 115606620 115607570 0.000000e+00 701
24 TraesCS5B01G043700 chr3D 78.706 958 172 26 1138 2088 115634699 115635631 8.640000e-171 610
25 TraesCS5B01G043700 chr3D 85.354 198 19 7 2937 3125 209695472 209695276 2.870000e-46 196
26 TraesCS5B01G043700 chr2D 95.413 436 19 1 3206 3641 642409242 642409676 0.000000e+00 693
27 TraesCS5B01G043700 chr2D 88.428 458 48 4 3128 3585 222643459 222643911 6.870000e-152 547
28 TraesCS5B01G043700 chr2D 91.803 244 17 3 2940 3183 642407209 642407449 1.620000e-88 337
29 TraesCS5B01G043700 chr2D 86.387 191 16 9 2950 3132 81839317 81839129 2.220000e-47 200
30 TraesCS5B01G043700 chr3A 79.368 1013 178 25 1135 2133 111824504 111825499 0.000000e+00 684
31 TraesCS5B01G043700 chr3A 79.101 957 170 24 1138 2088 111961994 111962926 1.840000e-177 632
32 TraesCS5B01G043700 chr3A 85.281 462 51 11 3128 3585 40844980 40844532 9.210000e-126 460
33 TraesCS5B01G043700 chr3B 79.731 967 167 24 1135 2088 169135094 169136044 0.000000e+00 673
34 TraesCS5B01G043700 chr3B 99.351 154 1 0 324 477 40214248 40214095 2.770000e-71 279
35 TraesCS5B01G043700 chr7A 91.410 454 31 7 3128 3576 158306061 158305611 1.860000e-172 616
36 TraesCS5B01G043700 chr7A 88.482 191 14 6 2950 3132 158306196 158306006 1.320000e-54 224
37 TraesCS5B01G043700 chr7D 85.714 462 56 8 3128 3585 83323915 83323460 2.540000e-131 479
38 TraesCS5B01G043700 chr1D 85.778 450 54 8 3134 3577 475705832 475705387 5.510000e-128 468
39 TraesCS5B01G043700 chr1D 92.308 143 11 0 2940 3082 460986290 460986148 1.710000e-48 204
40 TraesCS5B01G043700 chr1A 98.710 155 1 1 321 474 340411799 340411953 1.290000e-69 274
41 TraesCS5B01G043700 chr1A 95.395 152 7 0 325 476 45587417 45587266 3.630000e-60 243
42 TraesCS5B01G043700 chr1A 95.333 150 7 0 325 474 552838267 552838118 4.700000e-59 239
43 TraesCS5B01G043700 chr7B 95.425 153 7 0 322 474 577232626 577232778 1.010000e-60 244
44 TraesCS5B01G043700 chr7B 95.395 152 7 0 325 476 271250013 271250164 3.630000e-60 243
45 TraesCS5B01G043700 chr7B 95.333 150 7 0 325 474 77430158 77430009 4.700000e-59 239
46 TraesCS5B01G043700 chr2B 96.000 150 6 0 325 474 452597429 452597578 1.010000e-60 244


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G043700 chr5B 48858435 48862075 3640 True 6724.000000 6724 100.000000 1 3641 1 chr5B.!!$R1 3640
1 TraesCS5B01G043700 chr5D 46711355 46714980 3625 False 1479.500000 2776 96.329500 812 2842 2 chr5D.!!$F3 2030
2 TraesCS5B01G043700 chr6A 99967272 99972096 4824 True 1012.666667 2684 87.925333 2 2676 3 chr6A.!!$R2 2674
3 TraesCS5B01G043700 chr6B 157863172 157864851 1679 True 2388.000000 2388 92.218000 959 2668 1 chr6B.!!$R1 1709
4 TraesCS5B01G043700 chr4A 564951398 564952942 1544 False 1253.000000 1253 81.935000 1127 2629 1 chr4A.!!$F1 1502
5 TraesCS5B01G043700 chr4D 37288063 37289601 1538 True 1247.000000 1247 81.865000 1127 2629 1 chr4D.!!$R2 1502
6 TraesCS5B01G043700 chr4D 19295225 19295871 646 True 616.000000 616 84.043000 2937 3585 1 chr4D.!!$R1 648
7 TraesCS5B01G043700 chr4D 439128907 439129488 581 True 410.500000 606 89.490500 2950 3576 2 chr4D.!!$R3 626
8 TraesCS5B01G043700 chr4B 54329474 54330867 1393 True 1238.000000 1238 83.156000 1126 2494 1 chr4B.!!$R1 1368
9 TraesCS5B01G043700 chr4B 54517124 54522145 5021 False 709.000000 1190 78.379000 1128 2614 2 chr4B.!!$F1 1486
10 TraesCS5B01G043700 chr6D 32056800 32057486 686 True 1029.000000 1029 93.651000 2950 3641 1 chr6D.!!$R1 691
11 TraesCS5B01G043700 chr3D 115606620 115607570 950 False 701.000000 701 80.228000 1135 2088 1 chr3D.!!$F1 953
12 TraesCS5B01G043700 chr3D 115634699 115635631 932 False 610.000000 610 78.706000 1138 2088 1 chr3D.!!$F2 950
13 TraesCS5B01G043700 chr2D 642407209 642409676 2467 False 515.000000 693 93.608000 2940 3641 2 chr2D.!!$F2 701
14 TraesCS5B01G043700 chr3A 111824504 111825499 995 False 684.000000 684 79.368000 1135 2133 1 chr3A.!!$F1 998
15 TraesCS5B01G043700 chr3A 111961994 111962926 932 False 632.000000 632 79.101000 1138 2088 1 chr3A.!!$F2 950
16 TraesCS5B01G043700 chr3B 169135094 169136044 950 False 673.000000 673 79.731000 1135 2088 1 chr3B.!!$F1 953
17 TraesCS5B01G043700 chr7A 158305611 158306196 585 True 420.000000 616 89.946000 2950 3576 2 chr7A.!!$R1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 4944 0.032678 ACACGCAGTCAGGACTCAAG 59.967 55.0 0.0 0.0 41.61 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2823 7554 0.107945 ATTCTCCGCAGTCAAGAGCC 60.108 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.412386 AGACACTTGTGGCCAAATCTAC 58.588 45.455 7.24 0.00 0.00 2.59
122 127 2.220824 TGCGATGAGAACAACGTTCTTG 59.779 45.455 10.51 0.00 42.66 3.02
131 136 2.383298 CAACGTTCTTGTTGCATCGT 57.617 45.000 0.00 0.00 42.34 3.73
132 137 3.513462 CAACGTTCTTGTTGCATCGTA 57.487 42.857 0.00 0.00 42.34 3.43
133 138 3.215244 CAACGTTCTTGTTGCATCGTAC 58.785 45.455 0.00 0.00 42.34 3.67
134 139 2.750948 ACGTTCTTGTTGCATCGTACT 58.249 42.857 0.00 0.00 0.00 2.73
135 140 3.904571 ACGTTCTTGTTGCATCGTACTA 58.095 40.909 0.00 0.00 0.00 1.82
182 209 1.818959 GCCAATGGCCAAGCAACTGA 61.819 55.000 14.47 0.00 44.06 3.41
194 221 4.489810 CAAGCAACTGACTCTAGTAGGTG 58.510 47.826 0.00 0.00 32.39 4.00
195 222 3.768878 AGCAACTGACTCTAGTAGGTGT 58.231 45.455 0.00 0.00 31.87 4.16
196 223 3.508012 AGCAACTGACTCTAGTAGGTGTG 59.492 47.826 0.00 0.00 31.87 3.82
197 224 3.839293 CAACTGACTCTAGTAGGTGTGC 58.161 50.000 0.00 0.00 0.00 4.57
199 226 2.225041 ACTGACTCTAGTAGGTGTGCCA 60.225 50.000 0.00 0.00 37.19 4.92
200 227 3.027412 CTGACTCTAGTAGGTGTGCCAT 58.973 50.000 0.00 0.00 37.19 4.40
201 228 3.441101 TGACTCTAGTAGGTGTGCCATT 58.559 45.455 0.00 0.00 37.19 3.16
202 229 3.195610 TGACTCTAGTAGGTGTGCCATTG 59.804 47.826 0.00 0.00 37.19 2.82
203 230 2.093447 ACTCTAGTAGGTGTGCCATTGC 60.093 50.000 0.00 0.00 37.19 3.56
213 2249 4.487412 GCCATTGCACTCCGCTGC 62.487 66.667 0.00 0.00 43.06 5.25
227 2263 4.673375 CTGCCTGCCTGCCTGGTT 62.673 66.667 0.00 0.00 38.35 3.67
228 2264 4.666253 TGCCTGCCTGCCTGGTTC 62.666 66.667 0.00 0.00 38.35 3.62
230 2266 3.655211 CCTGCCTGCCTGGTTCCT 61.655 66.667 0.00 0.00 38.35 3.36
231 2267 2.360852 CTGCCTGCCTGGTTCCTG 60.361 66.667 0.00 0.00 38.35 3.86
232 2268 4.666253 TGCCTGCCTGGTTCCTGC 62.666 66.667 0.00 0.00 38.35 4.85
233 2269 4.666253 GCCTGCCTGGTTCCTGCA 62.666 66.667 0.00 6.49 38.35 4.41
235 2271 3.060615 CTGCCTGGTTCCTGCAGC 61.061 66.667 8.66 0.00 45.09 5.25
249 2285 2.046892 CAGCGGTGCACCTAAGCT 60.047 61.111 32.28 28.67 38.90 3.74
287 2323 2.266055 GGAGCTAGCTGTTGCCGT 59.734 61.111 24.99 0.00 40.80 5.68
288 2324 1.376037 GGAGCTAGCTGTTGCCGTT 60.376 57.895 24.99 0.00 40.80 4.44
289 2325 0.108329 GGAGCTAGCTGTTGCCGTTA 60.108 55.000 24.99 0.00 40.80 3.18
290 2326 1.000145 GAGCTAGCTGTTGCCGTTAC 59.000 55.000 24.99 0.00 40.80 2.50
291 2327 0.391263 AGCTAGCTGTTGCCGTTACC 60.391 55.000 18.57 0.00 40.80 2.85
292 2328 1.366854 GCTAGCTGTTGCCGTTACCC 61.367 60.000 7.70 0.00 40.80 3.69
293 2329 0.249398 CTAGCTGTTGCCGTTACCCT 59.751 55.000 0.00 0.00 40.80 4.34
294 2330 0.688487 TAGCTGTTGCCGTTACCCTT 59.312 50.000 0.00 0.00 40.80 3.95
295 2331 0.179001 AGCTGTTGCCGTTACCCTTT 60.179 50.000 0.00 0.00 40.80 3.11
296 2332 0.039527 GCTGTTGCCGTTACCCTTTG 60.040 55.000 0.00 0.00 0.00 2.77
297 2333 1.314730 CTGTTGCCGTTACCCTTTGT 58.685 50.000 0.00 0.00 0.00 2.83
298 2334 2.496111 CTGTTGCCGTTACCCTTTGTA 58.504 47.619 0.00 0.00 0.00 2.41
312 2348 2.009774 CTTTGTAGCCGCAGCAGTAAT 58.990 47.619 0.00 0.00 43.56 1.89
320 2356 0.500178 CGCAGCAGTAATCGATCGTG 59.500 55.000 15.94 6.65 0.00 4.35
321 2357 0.230769 GCAGCAGTAATCGATCGTGC 59.769 55.000 15.94 16.63 0.00 5.34
324 2360 2.217393 CAGCAGTAATCGATCGTGCTTC 59.783 50.000 22.88 6.43 41.72 3.86
325 2361 1.188138 GCAGTAATCGATCGTGCTTCG 59.812 52.381 15.94 2.65 41.41 3.79
335 2371 2.060326 TCGTGCTTCGAAACTACTGG 57.940 50.000 0.00 0.00 45.98 4.00
336 2372 1.068474 CGTGCTTCGAAACTACTGGG 58.932 55.000 0.00 0.00 42.86 4.45
337 2373 0.796927 GTGCTTCGAAACTACTGGGC 59.203 55.000 0.00 0.00 0.00 5.36
338 2374 0.669318 TGCTTCGAAACTACTGGGCG 60.669 55.000 0.00 0.00 0.00 6.13
339 2375 1.359459 GCTTCGAAACTACTGGGCGG 61.359 60.000 0.00 0.00 0.00 6.13
340 2376 0.245539 CTTCGAAACTACTGGGCGGA 59.754 55.000 0.00 0.00 0.00 5.54
341 2377 0.037975 TTCGAAACTACTGGGCGGAC 60.038 55.000 0.00 0.00 0.00 4.79
342 2378 1.804326 CGAAACTACTGGGCGGACG 60.804 63.158 0.00 0.00 0.00 4.79
343 2379 1.588082 GAAACTACTGGGCGGACGA 59.412 57.895 0.00 0.00 0.00 4.20
344 2380 0.735287 GAAACTACTGGGCGGACGAC 60.735 60.000 0.00 0.00 0.00 4.34
345 2381 1.466025 AAACTACTGGGCGGACGACA 61.466 55.000 0.00 0.00 0.00 4.35
346 2382 1.874345 AACTACTGGGCGGACGACAG 61.874 60.000 12.91 12.91 38.19 3.51
347 2383 2.282674 TACTGGGCGGACGACAGT 60.283 61.111 20.31 20.31 46.30 3.55
348 2384 2.543687 CTACTGGGCGGACGACAGTG 62.544 65.000 23.23 14.03 44.48 3.66
361 2397 4.077184 CAGTGCCCGCCCGAACTA 62.077 66.667 0.00 0.00 0.00 2.24
362 2398 3.081409 AGTGCCCGCCCGAACTAT 61.081 61.111 0.00 0.00 0.00 2.12
363 2399 2.895372 GTGCCCGCCCGAACTATG 60.895 66.667 0.00 0.00 0.00 2.23
364 2400 4.849310 TGCCCGCCCGAACTATGC 62.849 66.667 0.00 0.00 0.00 3.14
365 2401 4.849310 GCCCGCCCGAACTATGCA 62.849 66.667 0.00 0.00 0.00 3.96
366 2402 2.895372 CCCGCCCGAACTATGCAC 60.895 66.667 0.00 0.00 0.00 4.57
367 2403 3.261951 CCGCCCGAACTATGCACG 61.262 66.667 0.00 0.00 0.00 5.34
368 2404 2.202690 CGCCCGAACTATGCACGA 60.203 61.111 0.00 0.00 0.00 4.35
369 2405 1.591594 CGCCCGAACTATGCACGAT 60.592 57.895 0.00 0.00 0.00 3.73
370 2406 1.821241 CGCCCGAACTATGCACGATG 61.821 60.000 0.00 0.00 0.00 3.84
371 2407 1.498865 GCCCGAACTATGCACGATGG 61.499 60.000 0.00 0.00 0.00 3.51
372 2408 1.498865 CCCGAACTATGCACGATGGC 61.499 60.000 0.00 0.00 0.00 4.40
373 2409 0.530650 CCGAACTATGCACGATGGCT 60.531 55.000 0.00 0.00 34.04 4.75
374 2410 0.578683 CGAACTATGCACGATGGCTG 59.421 55.000 0.00 0.00 34.04 4.85
375 2411 1.802508 CGAACTATGCACGATGGCTGA 60.803 52.381 0.00 0.00 34.04 4.26
376 2412 2.487934 GAACTATGCACGATGGCTGAT 58.512 47.619 0.00 0.00 34.04 2.90
377 2413 2.627515 ACTATGCACGATGGCTGATT 57.372 45.000 0.00 0.00 34.04 2.57
378 2414 2.216046 ACTATGCACGATGGCTGATTG 58.784 47.619 0.00 0.00 34.04 2.67
379 2415 2.158914 ACTATGCACGATGGCTGATTGA 60.159 45.455 0.00 0.00 34.04 2.57
380 2416 1.753930 ATGCACGATGGCTGATTGAA 58.246 45.000 0.00 0.00 34.04 2.69
381 2417 0.804364 TGCACGATGGCTGATTGAAC 59.196 50.000 0.00 0.00 34.04 3.18
382 2418 0.247814 GCACGATGGCTGATTGAACG 60.248 55.000 0.00 0.00 0.00 3.95
383 2419 0.374758 CACGATGGCTGATTGAACGG 59.625 55.000 0.00 0.00 0.00 4.44
384 2420 1.353103 CGATGGCTGATTGAACGGC 59.647 57.895 0.00 0.00 40.94 5.68
385 2421 1.091771 CGATGGCTGATTGAACGGCT 61.092 55.000 0.00 0.00 41.36 5.52
386 2422 1.098050 GATGGCTGATTGAACGGCTT 58.902 50.000 0.00 0.00 41.36 4.35
387 2423 0.813184 ATGGCTGATTGAACGGCTTG 59.187 50.000 0.00 0.00 41.36 4.01
388 2424 0.250684 TGGCTGATTGAACGGCTTGA 60.251 50.000 0.00 0.00 41.36 3.02
389 2425 1.098050 GGCTGATTGAACGGCTTGAT 58.902 50.000 0.00 0.00 41.36 2.57
390 2426 2.288666 GGCTGATTGAACGGCTTGATA 58.711 47.619 0.00 0.00 41.36 2.15
391 2427 2.032178 GGCTGATTGAACGGCTTGATAC 59.968 50.000 0.00 0.00 41.36 2.24
392 2428 2.677836 GCTGATTGAACGGCTTGATACA 59.322 45.455 0.00 0.00 38.89 2.29
393 2429 3.242543 GCTGATTGAACGGCTTGATACAG 60.243 47.826 0.00 0.00 38.89 2.74
394 2430 3.935203 CTGATTGAACGGCTTGATACAGT 59.065 43.478 0.00 0.00 0.00 3.55
395 2431 5.079689 TGATTGAACGGCTTGATACAGTA 57.920 39.130 0.00 0.00 0.00 2.74
396 2432 5.670485 TGATTGAACGGCTTGATACAGTAT 58.330 37.500 0.00 0.00 0.00 2.12
397 2433 6.811954 TGATTGAACGGCTTGATACAGTATA 58.188 36.000 0.00 0.00 0.00 1.47
398 2434 7.441836 TGATTGAACGGCTTGATACAGTATAT 58.558 34.615 0.00 0.00 0.00 0.86
399 2435 7.598869 TGATTGAACGGCTTGATACAGTATATC 59.401 37.037 0.00 0.00 0.00 1.63
400 2436 6.650427 TGAACGGCTTGATACAGTATATCT 57.350 37.500 0.00 0.00 0.00 1.98
401 2437 7.050970 TGAACGGCTTGATACAGTATATCTT 57.949 36.000 0.00 0.00 0.00 2.40
402 2438 6.923508 TGAACGGCTTGATACAGTATATCTTG 59.076 38.462 0.00 0.00 0.00 3.02
403 2439 6.406692 ACGGCTTGATACAGTATATCTTGT 57.593 37.500 0.00 0.00 0.00 3.16
404 2440 6.216569 ACGGCTTGATACAGTATATCTTGTG 58.783 40.000 0.00 0.00 0.00 3.33
405 2441 6.183360 ACGGCTTGATACAGTATATCTTGTGT 60.183 38.462 0.00 0.00 0.00 3.72
406 2442 7.013942 ACGGCTTGATACAGTATATCTTGTGTA 59.986 37.037 0.00 0.00 0.00 2.90
407 2443 7.865889 CGGCTTGATACAGTATATCTTGTGTAA 59.134 37.037 0.00 0.00 0.00 2.41
408 2444 9.542462 GGCTTGATACAGTATATCTTGTGTAAA 57.458 33.333 0.00 0.00 0.00 2.01
414 2450 9.692749 ATACAGTATATCTTGTGTAAATGGACG 57.307 33.333 0.00 0.00 0.00 4.79
415 2451 7.553334 ACAGTATATCTTGTGTAAATGGACGT 58.447 34.615 0.00 0.00 0.00 4.34
416 2452 7.705325 ACAGTATATCTTGTGTAAATGGACGTC 59.295 37.037 7.13 7.13 0.00 4.34
417 2453 7.921214 CAGTATATCTTGTGTAAATGGACGTCT 59.079 37.037 16.46 0.00 0.00 4.18
418 2454 8.475639 AGTATATCTTGTGTAAATGGACGTCTT 58.524 33.333 16.46 4.56 0.00 3.01
419 2455 5.862924 ATCTTGTGTAAATGGACGTCTTG 57.137 39.130 16.46 0.00 0.00 3.02
420 2456 4.951254 TCTTGTGTAAATGGACGTCTTGA 58.049 39.130 16.46 0.00 0.00 3.02
421 2457 5.547465 TCTTGTGTAAATGGACGTCTTGAT 58.453 37.500 16.46 2.50 0.00 2.57
422 2458 5.408299 TCTTGTGTAAATGGACGTCTTGATG 59.592 40.000 16.46 0.00 0.00 3.07
423 2459 4.000325 TGTGTAAATGGACGTCTTGATGG 59.000 43.478 16.46 0.00 0.00 3.51
424 2460 3.374058 GTGTAAATGGACGTCTTGATGGG 59.626 47.826 16.46 0.00 0.00 4.00
425 2461 2.879103 AAATGGACGTCTTGATGGGT 57.121 45.000 16.46 0.00 0.00 4.51
426 2462 3.992943 AAATGGACGTCTTGATGGGTA 57.007 42.857 16.46 0.00 0.00 3.69
427 2463 3.543680 AATGGACGTCTTGATGGGTAG 57.456 47.619 16.46 0.00 0.00 3.18
428 2464 0.535335 TGGACGTCTTGATGGGTAGC 59.465 55.000 16.46 0.00 0.00 3.58
429 2465 0.535335 GGACGTCTTGATGGGTAGCA 59.465 55.000 16.46 0.00 0.00 3.49
430 2466 1.139058 GGACGTCTTGATGGGTAGCAT 59.861 52.381 16.46 0.00 0.00 3.79
431 2467 2.474816 GACGTCTTGATGGGTAGCATC 58.525 52.381 8.70 0.00 0.00 3.91
432 2468 1.202417 ACGTCTTGATGGGTAGCATCG 60.202 52.381 0.00 0.00 32.04 3.84
433 2469 1.202417 CGTCTTGATGGGTAGCATCGT 60.202 52.381 0.00 0.00 32.04 3.73
434 2470 2.205074 GTCTTGATGGGTAGCATCGTG 58.795 52.381 0.00 0.00 32.04 4.35
435 2471 1.831106 TCTTGATGGGTAGCATCGTGT 59.169 47.619 0.00 0.00 32.04 4.49
436 2472 1.935873 CTTGATGGGTAGCATCGTGTG 59.064 52.381 0.00 0.00 32.04 3.82
437 2473 0.901827 TGATGGGTAGCATCGTGTGT 59.098 50.000 0.00 0.00 32.04 3.72
438 2474 2.104170 TGATGGGTAGCATCGTGTGTA 58.896 47.619 0.00 0.00 32.04 2.90
439 2475 2.498078 TGATGGGTAGCATCGTGTGTAA 59.502 45.455 0.00 0.00 32.04 2.41
440 2476 3.055747 TGATGGGTAGCATCGTGTGTAAA 60.056 43.478 0.00 0.00 32.04 2.01
441 2477 3.620427 TGGGTAGCATCGTGTGTAAAT 57.380 42.857 0.00 0.00 0.00 1.40
442 2478 3.527533 TGGGTAGCATCGTGTGTAAATC 58.472 45.455 0.00 0.00 0.00 2.17
443 2479 2.538449 GGGTAGCATCGTGTGTAAATCG 59.462 50.000 0.00 0.00 0.00 3.34
444 2480 3.184541 GGTAGCATCGTGTGTAAATCGT 58.815 45.455 0.00 0.00 0.00 3.73
445 2481 3.242248 GGTAGCATCGTGTGTAAATCGTC 59.758 47.826 0.00 0.00 0.00 4.20
446 2482 2.268298 AGCATCGTGTGTAAATCGTCC 58.732 47.619 0.00 0.00 0.00 4.79
447 2483 1.996898 GCATCGTGTGTAAATCGTCCA 59.003 47.619 0.00 0.00 0.00 4.02
448 2484 2.607635 GCATCGTGTGTAAATCGTCCAT 59.392 45.455 0.00 0.00 0.00 3.41
449 2485 3.799963 GCATCGTGTGTAAATCGTCCATA 59.200 43.478 0.00 0.00 0.00 2.74
450 2486 4.317839 GCATCGTGTGTAAATCGTCCATAC 60.318 45.833 0.00 0.00 0.00 2.39
451 2487 4.707030 TCGTGTGTAAATCGTCCATACT 57.293 40.909 0.00 0.00 0.00 2.12
452 2488 5.063180 TCGTGTGTAAATCGTCCATACTT 57.937 39.130 0.00 0.00 0.00 2.24
453 2489 4.860352 TCGTGTGTAAATCGTCCATACTTG 59.140 41.667 0.00 0.00 0.00 3.16
454 2490 4.624024 CGTGTGTAAATCGTCCATACTTGT 59.376 41.667 0.00 0.00 0.00 3.16
455 2491 5.220154 CGTGTGTAAATCGTCCATACTTGTC 60.220 44.000 0.00 0.00 0.00 3.18
456 2492 4.860352 TGTGTAAATCGTCCATACTTGTCG 59.140 41.667 0.00 0.00 0.00 4.35
457 2493 4.860907 GTGTAAATCGTCCATACTTGTCGT 59.139 41.667 0.00 0.00 0.00 4.34
458 2494 4.860352 TGTAAATCGTCCATACTTGTCGTG 59.140 41.667 0.00 0.00 0.00 4.35
459 2495 3.587797 AATCGTCCATACTTGTCGTGT 57.412 42.857 0.00 0.00 0.00 4.49
460 2496 2.341318 TCGTCCATACTTGTCGTGTG 57.659 50.000 0.00 0.00 34.81 3.82
461 2497 1.610038 TCGTCCATACTTGTCGTGTGT 59.390 47.619 0.00 0.00 33.34 3.72
462 2498 2.813172 TCGTCCATACTTGTCGTGTGTA 59.187 45.455 0.00 0.00 33.34 2.90
463 2499 3.441222 TCGTCCATACTTGTCGTGTGTAT 59.559 43.478 0.00 0.00 33.34 2.29
464 2500 4.635324 TCGTCCATACTTGTCGTGTGTATA 59.365 41.667 0.00 0.00 33.34 1.47
465 2501 4.968181 CGTCCATACTTGTCGTGTGTATAG 59.032 45.833 0.00 0.00 33.34 1.31
466 2502 4.738740 GTCCATACTTGTCGTGTGTATAGC 59.261 45.833 0.00 0.00 33.34 2.97
467 2503 4.399934 TCCATACTTGTCGTGTGTATAGCA 59.600 41.667 0.00 0.00 33.34 3.49
468 2504 4.740205 CCATACTTGTCGTGTGTATAGCAG 59.260 45.833 0.00 0.00 33.34 4.24
469 2505 2.607187 ACTTGTCGTGTGTATAGCAGC 58.393 47.619 0.00 0.00 0.00 5.25
470 2506 1.583856 CTTGTCGTGTGTATAGCAGCG 59.416 52.381 0.00 0.00 0.00 5.18
471 2507 0.524414 TGTCGTGTGTATAGCAGCGT 59.476 50.000 0.00 0.00 0.00 5.07
472 2508 1.068125 TGTCGTGTGTATAGCAGCGTT 60.068 47.619 0.00 0.00 0.00 4.84
473 2509 1.582502 GTCGTGTGTATAGCAGCGTTC 59.417 52.381 0.00 0.00 0.00 3.95
474 2510 1.200484 TCGTGTGTATAGCAGCGTTCA 59.800 47.619 0.00 0.00 0.00 3.18
475 2511 2.159296 TCGTGTGTATAGCAGCGTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
476 2512 2.216488 CGTGTGTATAGCAGCGTTCATC 59.784 50.000 0.00 0.00 0.00 2.92
477 2513 2.216488 GTGTGTATAGCAGCGTTCATCG 59.784 50.000 0.00 0.00 43.12 3.84
480 2516 1.190323 GTATAGCAGCGTTCATCGTGC 59.810 52.381 0.00 0.00 42.31 5.34
483 2519 1.207593 GCAGCGTTCATCGTGCTTT 59.792 52.632 0.00 0.00 40.50 3.51
492 2528 0.609131 CATCGTGCTTTGGGGGTCTT 60.609 55.000 0.00 0.00 0.00 3.01
493 2529 0.609131 ATCGTGCTTTGGGGGTCTTG 60.609 55.000 0.00 0.00 0.00 3.02
495 2531 0.250553 CGTGCTTTGGGGGTCTTGTA 60.251 55.000 0.00 0.00 0.00 2.41
496 2532 1.534729 GTGCTTTGGGGGTCTTGTAG 58.465 55.000 0.00 0.00 0.00 2.74
497 2533 1.145571 TGCTTTGGGGGTCTTGTAGT 58.854 50.000 0.00 0.00 0.00 2.73
526 2566 4.640771 TTTAGCTGTTGTTGATCCTCCT 57.359 40.909 0.00 0.00 0.00 3.69
540 2580 4.103785 TGATCCTCCTGAATTCCTTCATCC 59.896 45.833 2.27 0.00 40.52 3.51
559 2599 4.235079 TCCATGTAGGATCTTGGTTTGG 57.765 45.455 0.00 0.00 43.07 3.28
569 2609 0.249573 CTTGGTTTGGTTGCTGCCTG 60.250 55.000 0.00 0.00 0.00 4.85
600 2646 4.516698 TGCTTGTCCTCAAAGATGAAAGAC 59.483 41.667 0.00 0.00 38.50 3.01
692 3064 3.128589 GCTCGATTTTTCATTGGTAGGCA 59.871 43.478 0.00 0.00 0.00 4.75
695 3067 4.155826 TCGATTTTTCATTGGTAGGCACTG 59.844 41.667 0.00 0.00 41.52 3.66
699 3071 0.618458 TCATTGGTAGGCACTGGACC 59.382 55.000 0.00 0.00 41.52 4.46
707 3079 4.436998 GCACTGGACCGGGAGACG 62.437 72.222 6.32 0.00 43.80 4.18
740 3112 1.145377 GTCCGTATGGCCACCGATT 59.855 57.895 24.16 4.60 34.14 3.34
741 3113 0.463116 GTCCGTATGGCCACCGATTT 60.463 55.000 24.16 3.84 34.14 2.17
742 3114 0.179067 TCCGTATGGCCACCGATTTC 60.179 55.000 24.16 0.00 34.14 2.17
743 3115 0.462937 CCGTATGGCCACCGATTTCA 60.463 55.000 24.16 0.00 0.00 2.69
744 3116 0.655733 CGTATGGCCACCGATTTCAC 59.344 55.000 19.23 2.40 0.00 3.18
745 3117 0.655733 GTATGGCCACCGATTTCACG 59.344 55.000 8.16 0.00 0.00 4.35
753 3125 3.453559 CCGATTTCACGGCCTTAGT 57.546 52.632 0.00 0.00 46.20 2.24
756 3128 2.159572 CCGATTTCACGGCCTTAGTTTG 60.160 50.000 0.00 0.00 46.20 2.93
763 3135 4.138290 TCACGGCCTTAGTTTGAATTTGA 58.862 39.130 0.00 0.00 0.00 2.69
769 3141 6.089417 CGGCCTTAGTTTGAATTTGAATCAAC 59.911 38.462 0.00 0.00 36.57 3.18
770 3142 6.368791 GGCCTTAGTTTGAATTTGAATCAACC 59.631 38.462 0.00 0.00 36.57 3.77
774 3146 9.492973 CTTAGTTTGAATTTGAATCAACCCAAT 57.507 29.630 0.00 0.00 36.57 3.16
775 3147 7.733402 AGTTTGAATTTGAATCAACCCAATG 57.267 32.000 0.00 0.00 36.57 2.82
776 3148 6.711645 AGTTTGAATTTGAATCAACCCAATGG 59.288 34.615 0.00 0.00 36.57 3.16
777 3149 6.430962 TTGAATTTGAATCAACCCAATGGA 57.569 33.333 0.00 0.00 32.10 3.41
778 3150 6.430962 TGAATTTGAATCAACCCAATGGAA 57.569 33.333 0.00 0.00 34.81 3.53
779 3151 6.465948 TGAATTTGAATCAACCCAATGGAAG 58.534 36.000 0.00 0.00 34.81 3.46
780 3152 6.269538 TGAATTTGAATCAACCCAATGGAAGA 59.730 34.615 0.00 0.00 34.81 2.87
781 3153 5.467035 TTTGAATCAACCCAATGGAAGAC 57.533 39.130 0.00 0.00 34.81 3.01
782 3154 3.430453 TGAATCAACCCAATGGAAGACC 58.570 45.455 0.00 0.00 34.81 3.85
803 3175 8.298729 AGACCTTGAATTTTGAAAGACTTTCT 57.701 30.769 24.60 7.75 40.32 2.52
945 4939 1.446272 GGCTACACGCAGTCAGGAC 60.446 63.158 0.00 0.00 41.61 3.85
946 4940 1.587054 GCTACACGCAGTCAGGACT 59.413 57.895 0.00 0.00 41.61 3.85
947 4941 0.456995 GCTACACGCAGTCAGGACTC 60.457 60.000 0.00 0.00 41.61 3.36
948 4942 0.881796 CTACACGCAGTCAGGACTCA 59.118 55.000 0.00 0.00 41.61 3.41
949 4943 1.269723 CTACACGCAGTCAGGACTCAA 59.730 52.381 0.00 0.00 41.61 3.02
950 4944 0.032678 ACACGCAGTCAGGACTCAAG 59.967 55.000 0.00 0.00 41.61 3.02
951 4945 0.315251 CACGCAGTCAGGACTCAAGA 59.685 55.000 0.00 0.00 41.61 3.02
952 4946 0.315568 ACGCAGTCAGGACTCAAGAC 59.684 55.000 0.00 0.00 40.20 3.01
953 4947 0.600557 CGCAGTCAGGACTCAAGACT 59.399 55.000 0.00 0.00 42.97 3.24
954 4948 1.402194 CGCAGTCAGGACTCAAGACTC 60.402 57.143 0.00 0.00 40.42 3.36
984 4981 1.300963 GGCATTGCCTCCACTCTGA 59.699 57.895 20.66 0.00 46.69 3.27
1053 5053 1.352622 TTTGTCTGGTCCCAGCCACT 61.353 55.000 8.53 0.00 43.31 4.00
1090 5090 1.529865 GTAATCTACGCAAATCCCCGC 59.470 52.381 0.00 0.00 0.00 6.13
1096 5096 3.564027 GCAAATCCCCGCTCGACG 61.564 66.667 0.00 0.00 43.15 5.12
1473 5493 0.614979 AGGACATCACCAGGTACGCT 60.615 55.000 0.00 0.00 0.00 5.07
1515 5541 4.052229 ACCCTCGCCGTCTTCGTG 62.052 66.667 0.00 0.00 35.01 4.35
1695 5743 0.687354 ACAAGATCCAGAACGCCACT 59.313 50.000 0.00 0.00 0.00 4.00
1899 5952 2.656069 CCCCGTCATCTTCACCGGT 61.656 63.158 0.00 0.00 38.79 5.28
1914 5967 3.728373 GGTGGCATCGACCCCCTT 61.728 66.667 0.00 0.00 0.00 3.95
2190 6273 4.390556 AGCAGGGAGGTCTCGGCT 62.391 66.667 0.00 0.00 0.00 5.52
2471 6572 2.939353 GGGGCCCAGGTACCAGTT 60.939 66.667 26.86 0.00 0.00 3.16
2596 7019 0.735978 CAGCGGTTACAGCATCGTGA 60.736 55.000 10.40 0.00 37.01 4.35
2648 7071 2.279741 GCCATTGCGTTGATCTACAGA 58.720 47.619 8.04 0.00 0.00 3.41
2676 7099 5.061179 AGCAAGAAATAAAGTGTACGGTGT 58.939 37.500 0.00 0.00 0.00 4.16
2724 7150 4.902443 TTTGAAAAGCAATGACGTACCA 57.098 36.364 0.00 0.00 36.15 3.25
2725 7151 5.446143 TTTGAAAAGCAATGACGTACCAT 57.554 34.783 0.00 0.00 36.15 3.55
2726 7152 6.561737 TTTGAAAAGCAATGACGTACCATA 57.438 33.333 0.00 0.00 36.15 2.74
2727 7153 6.751514 TTGAAAAGCAATGACGTACCATAT 57.248 33.333 0.00 0.00 0.00 1.78
2732 7463 9.562583 GAAAAGCAATGACGTACCATATTTTTA 57.437 29.630 0.00 0.00 0.00 1.52
2763 7494 2.767505 CCCGGACAGTTCCTATATTGC 58.232 52.381 0.73 0.00 40.23 3.56
2766 7497 3.393800 CGGACAGTTCCTATATTGCCAG 58.606 50.000 0.00 0.00 40.23 4.85
2773 7504 7.573710 ACAGTTCCTATATTGCCAGTTTATGA 58.426 34.615 0.00 0.00 0.00 2.15
2779 7510 6.428159 CCTATATTGCCAGTTTATGACAGTCC 59.572 42.308 0.00 0.00 0.00 3.85
2799 7530 2.616960 CACAACAAGCCTACGAGCATA 58.383 47.619 0.00 0.00 34.23 3.14
2803 7534 2.893637 ACAAGCCTACGAGCATACAAG 58.106 47.619 0.00 0.00 34.23 3.16
2813 7544 1.394917 GAGCATACAAGCCAACGACAG 59.605 52.381 0.00 0.00 34.23 3.51
2823 7554 2.930040 AGCCAACGACAGAATACAATCG 59.070 45.455 0.00 0.00 40.39 3.34
2833 7564 4.081420 ACAGAATACAATCGGCTCTTGACT 60.081 41.667 3.34 0.00 0.00 3.41
2842 7573 0.107945 GGCTCTTGACTGCGGAGAAT 60.108 55.000 12.26 0.00 0.00 2.40
2844 7575 1.404717 GCTCTTGACTGCGGAGAATGA 60.405 52.381 12.26 5.47 0.00 2.57
2845 7576 2.538437 CTCTTGACTGCGGAGAATGAG 58.462 52.381 12.26 11.22 0.00 2.90
2846 7577 1.205655 TCTTGACTGCGGAGAATGAGG 59.794 52.381 12.26 0.00 0.00 3.86
2847 7578 1.205655 CTTGACTGCGGAGAATGAGGA 59.794 52.381 12.26 0.00 0.00 3.71
2849 7580 1.833630 TGACTGCGGAGAATGAGGAAT 59.166 47.619 12.26 0.00 0.00 3.01
2850 7581 2.159043 TGACTGCGGAGAATGAGGAATC 60.159 50.000 12.26 0.00 0.00 2.52
2851 7582 1.833630 ACTGCGGAGAATGAGGAATCA 59.166 47.619 12.26 0.00 0.00 2.57
2852 7583 2.437281 ACTGCGGAGAATGAGGAATCAT 59.563 45.455 12.26 0.00 0.00 2.45
2854 7585 4.101585 ACTGCGGAGAATGAGGAATCATTA 59.898 41.667 12.26 0.00 40.08 1.90
2855 7586 4.380531 TGCGGAGAATGAGGAATCATTAC 58.619 43.478 3.58 2.38 40.08 1.89
2857 7588 4.999950 GCGGAGAATGAGGAATCATTACAT 59.000 41.667 3.58 0.00 40.08 2.29
2858 7589 6.166279 GCGGAGAATGAGGAATCATTACATA 58.834 40.000 3.58 0.00 40.08 2.29
2859 7590 6.091441 GCGGAGAATGAGGAATCATTACATAC 59.909 42.308 3.58 0.00 40.08 2.39
2862 7593 9.566432 GGAGAATGAGGAATCATTACATACTTT 57.434 33.333 3.58 0.00 40.08 2.66
2871 7602 9.434559 GGAATCATTACATACTTTAGTTTTCGC 57.565 33.333 0.00 0.00 0.00 4.70
2872 7603 9.434559 GAATCATTACATACTTTAGTTTTCGCC 57.565 33.333 0.00 0.00 0.00 5.54
2873 7604 7.311364 TCATTACATACTTTAGTTTTCGCCC 57.689 36.000 0.00 0.00 0.00 6.13
2878 7609 6.232692 ACATACTTTAGTTTTCGCCCTTGTA 58.767 36.000 0.00 0.00 0.00 2.41
2879 7610 6.148315 ACATACTTTAGTTTTCGCCCTTGTAC 59.852 38.462 0.00 0.00 0.00 2.90
2880 7611 4.711399 ACTTTAGTTTTCGCCCTTGTACT 58.289 39.130 0.00 0.00 0.00 2.73
2882 7613 5.008316 ACTTTAGTTTTCGCCCTTGTACTTG 59.992 40.000 0.00 0.00 0.00 3.16
2883 7614 3.202829 AGTTTTCGCCCTTGTACTTGA 57.797 42.857 0.00 0.00 0.00 3.02
2884 7615 3.139077 AGTTTTCGCCCTTGTACTTGAG 58.861 45.455 0.00 0.00 0.00 3.02
2886 7617 2.450609 TTCGCCCTTGTACTTGAGAC 57.549 50.000 0.00 0.00 0.00 3.36
2888 7619 1.689813 TCGCCCTTGTACTTGAGACAA 59.310 47.619 0.00 0.00 35.55 3.18
2889 7620 2.103432 TCGCCCTTGTACTTGAGACAAA 59.897 45.455 0.00 0.00 36.41 2.83
2890 7621 2.480419 CGCCCTTGTACTTGAGACAAAG 59.520 50.000 0.00 0.00 36.41 2.77
2891 7622 2.226674 GCCCTTGTACTTGAGACAAAGC 59.773 50.000 0.00 0.00 36.41 3.51
2892 7623 3.476552 CCCTTGTACTTGAGACAAAGCA 58.523 45.455 0.00 0.00 36.41 3.91
2893 7624 3.882888 CCCTTGTACTTGAGACAAAGCAA 59.117 43.478 0.00 0.00 36.41 3.91
2894 7625 4.023707 CCCTTGTACTTGAGACAAAGCAAG 60.024 45.833 0.00 0.00 45.27 4.01
2896 7627 3.540617 TGTACTTGAGACAAAGCAAGCA 58.459 40.909 0.00 0.00 43.99 3.91
2897 7628 3.944650 TGTACTTGAGACAAAGCAAGCAA 59.055 39.130 0.00 0.00 43.99 3.91
2899 7630 2.223665 ACTTGAGACAAAGCAAGCAAGC 60.224 45.455 0.00 0.00 43.99 4.01
2901 7632 0.670162 GAGACAAAGCAAGCAAGCCA 59.330 50.000 0.00 0.00 34.23 4.75
2905 7636 1.139455 ACAAAGCAAGCAAGCCATGTT 59.861 42.857 0.00 0.00 32.09 2.71
2906 7637 1.529438 CAAAGCAAGCAAGCCATGTTG 59.471 47.619 0.00 0.00 34.23 3.33
2907 7638 1.042229 AAGCAAGCAAGCCATGTTGA 58.958 45.000 0.45 0.00 34.23 3.18
2910 7641 1.000060 GCAAGCAAGCCATGTTGAGAA 60.000 47.619 0.45 0.00 0.00 2.87
2911 7642 2.546373 GCAAGCAAGCCATGTTGAGAAA 60.546 45.455 0.45 0.00 0.00 2.52
2912 7643 3.314553 CAAGCAAGCCATGTTGAGAAAG 58.685 45.455 0.45 0.00 0.00 2.62
2914 7645 1.271656 GCAAGCCATGTTGAGAAAGCT 59.728 47.619 0.45 0.00 0.00 3.74
2916 7647 3.129988 GCAAGCCATGTTGAGAAAGCTAT 59.870 43.478 0.45 0.00 0.00 2.97
2918 7649 5.338365 CAAGCCATGTTGAGAAAGCTATTC 58.662 41.667 0.00 0.00 0.00 1.75
2919 7650 4.853007 AGCCATGTTGAGAAAGCTATTCT 58.147 39.130 9.89 9.89 0.00 2.40
2920 7651 5.259632 AGCCATGTTGAGAAAGCTATTCTT 58.740 37.500 11.00 0.00 36.34 2.52
2921 7652 6.418101 AGCCATGTTGAGAAAGCTATTCTTA 58.582 36.000 11.00 6.02 33.88 2.10
2922 7653 7.059156 AGCCATGTTGAGAAAGCTATTCTTAT 58.941 34.615 11.00 4.13 33.88 1.73
2923 7654 7.228308 AGCCATGTTGAGAAAGCTATTCTTATC 59.772 37.037 11.00 7.90 33.88 1.75
2924 7655 7.012704 GCCATGTTGAGAAAGCTATTCTTATCA 59.987 37.037 11.00 11.71 33.88 2.15
2925 7656 8.557864 CCATGTTGAGAAAGCTATTCTTATCAG 58.442 37.037 11.00 7.56 34.28 2.90
2926 7657 7.545362 TGTTGAGAAAGCTATTCTTATCAGC 57.455 36.000 11.00 6.53 34.28 4.26
2927 7658 6.256539 TGTTGAGAAAGCTATTCTTATCAGCG 59.743 38.462 11.00 0.00 40.29 5.18
2928 7659 5.907207 TGAGAAAGCTATTCTTATCAGCGT 58.093 37.500 11.00 0.00 40.29 5.07
2929 7660 5.980116 TGAGAAAGCTATTCTTATCAGCGTC 59.020 40.000 11.00 0.00 40.29 5.19
2930 7661 5.907207 AGAAAGCTATTCTTATCAGCGTCA 58.093 37.500 5.61 0.00 40.29 4.35
2932 7663 6.818644 AGAAAGCTATTCTTATCAGCGTCAAA 59.181 34.615 5.61 0.00 40.29 2.69
2933 7664 6.985188 AAGCTATTCTTATCAGCGTCAAAA 57.015 33.333 0.00 0.00 40.29 2.44
2935 7666 7.009568 AGCTATTCTTATCAGCGTCAAAAAG 57.990 36.000 0.00 0.00 40.29 2.27
3086 8374 2.768344 GCTCCTTCCCATCCCCGA 60.768 66.667 0.00 0.00 0.00 5.14
3155 8497 4.457257 CAGGCCTTTCCTCTCTACAAAAAG 59.543 45.833 0.00 0.00 45.52 2.27
3195 8586 8.261522 ACTAAAAAGCCCTATTTTTGTTGTGAA 58.738 29.630 7.28 0.00 41.29 3.18
3247 10708 3.977134 AATGCCATGGTATTGTGCAAA 57.023 38.095 25.26 0.00 35.30 3.68
3394 10919 9.730420 GTTATACGCAAATTTACCATCTTCAAT 57.270 29.630 0.00 0.00 0.00 2.57
3441 10966 3.118261 CCCATGGCAGCTAAGAGAAGTTA 60.118 47.826 6.09 0.00 0.00 2.24
3599 11191 4.124970 GAGTAAAACCCTCGTGTCACTTT 58.875 43.478 0.65 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.610040 TGGCCACAAGTGTCTAGTATG 57.390 47.619 0.00 0.00 0.00 2.39
122 127 2.030457 GTGGCACATAGTACGATGCAAC 59.970 50.000 13.86 9.94 44.52 4.17
133 138 5.265596 CTGCAAGAAGCTGTGGCACATAG 62.266 52.174 22.35 11.77 44.19 2.23
134 139 1.167851 GCAAGAAGCTGTGGCACATA 58.832 50.000 22.35 0.00 40.30 2.29
135 140 0.824595 TGCAAGAAGCTGTGGCACAT 60.825 50.000 22.35 6.31 43.32 3.21
174 201 3.508012 CACACCTACTAGAGTCAGTTGCT 59.492 47.826 0.00 0.00 0.00 3.91
213 2249 3.655211 AGGAACCAGGCAGGCAGG 61.655 66.667 3.51 3.51 43.14 4.85
222 2258 3.052082 CACCGCTGCAGGAACCAG 61.052 66.667 17.12 0.00 34.73 4.00
231 2267 2.852495 TAGCTTAGGTGCACCGCTGC 62.852 60.000 33.93 31.62 44.52 5.25
232 2268 0.807667 CTAGCTTAGGTGCACCGCTG 60.808 60.000 33.93 25.73 42.08 5.18
233 2269 1.517832 CTAGCTTAGGTGCACCGCT 59.482 57.895 31.04 31.04 42.08 5.52
234 2270 2.174319 GCTAGCTTAGGTGCACCGC 61.174 63.158 29.68 25.68 42.08 5.68
235 2271 0.391130 TTGCTAGCTTAGGTGCACCG 60.391 55.000 29.68 17.12 42.08 4.94
265 2301 4.821589 AACAGCTAGCTCCGCCGC 62.822 66.667 16.15 0.00 0.00 6.53
280 2316 1.198408 GCTACAAAGGGTAACGGCAAC 59.802 52.381 0.00 0.00 37.60 4.17
282 2318 0.321830 GGCTACAAAGGGTAACGGCA 60.322 55.000 0.00 0.00 37.60 5.69
287 2323 0.675522 GCTGCGGCTACAAAGGGTAA 60.676 55.000 11.21 0.00 35.22 2.85
288 2324 1.078708 GCTGCGGCTACAAAGGGTA 60.079 57.895 11.21 0.00 35.22 3.69
289 2325 2.359975 GCTGCGGCTACAAAGGGT 60.360 61.111 11.21 0.00 35.22 4.34
290 2326 2.359850 TGCTGCGGCTACAAAGGG 60.360 61.111 20.27 0.00 39.59 3.95
291 2327 0.391130 TACTGCTGCGGCTACAAAGG 60.391 55.000 20.27 2.85 39.59 3.11
292 2328 1.438651 TTACTGCTGCGGCTACAAAG 58.561 50.000 20.27 9.75 39.59 2.77
293 2329 2.006888 GATTACTGCTGCGGCTACAAA 58.993 47.619 20.27 8.25 39.59 2.83
294 2330 1.651987 GATTACTGCTGCGGCTACAA 58.348 50.000 20.27 9.74 39.59 2.41
295 2331 0.527600 CGATTACTGCTGCGGCTACA 60.528 55.000 20.27 0.00 39.59 2.74
296 2332 0.248907 TCGATTACTGCTGCGGCTAC 60.249 55.000 20.27 2.93 39.59 3.58
297 2333 0.673985 ATCGATTACTGCTGCGGCTA 59.326 50.000 20.27 0.00 39.59 3.93
298 2334 0.598680 GATCGATTACTGCTGCGGCT 60.599 55.000 20.27 1.00 39.59 5.52
320 2356 1.359459 CCGCCCAGTAGTTTCGAAGC 61.359 60.000 3.49 3.49 0.00 3.86
321 2357 0.245539 TCCGCCCAGTAGTTTCGAAG 59.754 55.000 0.00 0.00 0.00 3.79
324 2360 1.804326 CGTCCGCCCAGTAGTTTCG 60.804 63.158 0.00 0.00 0.00 3.46
325 2361 0.735287 GTCGTCCGCCCAGTAGTTTC 60.735 60.000 0.00 0.00 0.00 2.78
326 2362 1.291272 GTCGTCCGCCCAGTAGTTT 59.709 57.895 0.00 0.00 0.00 2.66
327 2363 1.874345 CTGTCGTCCGCCCAGTAGTT 61.874 60.000 0.00 0.00 0.00 2.24
328 2364 2.282674 TGTCGTCCGCCCAGTAGT 60.283 61.111 0.00 0.00 0.00 2.73
329 2365 2.341101 ACTGTCGTCCGCCCAGTAG 61.341 63.158 9.18 0.00 37.66 2.57
330 2366 2.282674 ACTGTCGTCCGCCCAGTA 60.283 61.111 9.18 0.00 37.66 2.74
331 2367 3.991051 CACTGTCGTCCGCCCAGT 61.991 66.667 6.17 6.17 39.93 4.00
344 2380 3.385749 ATAGTTCGGGCGGGCACTG 62.386 63.158 3.27 0.00 38.10 3.66
345 2381 3.081409 ATAGTTCGGGCGGGCACT 61.081 61.111 3.27 0.85 0.00 4.40
346 2382 2.895372 CATAGTTCGGGCGGGCAC 60.895 66.667 3.27 0.00 0.00 5.01
347 2383 4.849310 GCATAGTTCGGGCGGGCA 62.849 66.667 3.27 0.00 0.00 5.36
348 2384 4.849310 TGCATAGTTCGGGCGGGC 62.849 66.667 0.00 0.00 0.00 6.13
349 2385 2.895372 GTGCATAGTTCGGGCGGG 60.895 66.667 0.00 0.00 0.00 6.13
350 2386 2.971428 ATCGTGCATAGTTCGGGCGG 62.971 60.000 0.00 0.00 0.00 6.13
351 2387 1.591594 ATCGTGCATAGTTCGGGCG 60.592 57.895 0.00 0.00 0.00 6.13
352 2388 1.498865 CCATCGTGCATAGTTCGGGC 61.499 60.000 0.00 0.00 0.00 6.13
353 2389 1.498865 GCCATCGTGCATAGTTCGGG 61.499 60.000 0.00 0.00 0.00 5.14
354 2390 0.530650 AGCCATCGTGCATAGTTCGG 60.531 55.000 0.00 0.00 0.00 4.30
355 2391 0.578683 CAGCCATCGTGCATAGTTCG 59.421 55.000 0.00 0.00 0.00 3.95
356 2392 1.939974 TCAGCCATCGTGCATAGTTC 58.060 50.000 0.00 0.00 0.00 3.01
357 2393 2.615447 CAATCAGCCATCGTGCATAGTT 59.385 45.455 0.00 0.00 0.00 2.24
358 2394 2.158914 TCAATCAGCCATCGTGCATAGT 60.159 45.455 0.00 0.00 0.00 2.12
359 2395 2.486918 TCAATCAGCCATCGTGCATAG 58.513 47.619 0.00 0.00 0.00 2.23
360 2396 2.613595 GTTCAATCAGCCATCGTGCATA 59.386 45.455 0.00 0.00 0.00 3.14
361 2397 1.402968 GTTCAATCAGCCATCGTGCAT 59.597 47.619 0.00 0.00 0.00 3.96
362 2398 0.804364 GTTCAATCAGCCATCGTGCA 59.196 50.000 0.00 0.00 0.00 4.57
363 2399 0.247814 CGTTCAATCAGCCATCGTGC 60.248 55.000 0.00 0.00 0.00 5.34
364 2400 0.374758 CCGTTCAATCAGCCATCGTG 59.625 55.000 0.00 0.00 0.00 4.35
365 2401 1.369091 GCCGTTCAATCAGCCATCGT 61.369 55.000 0.00 0.00 0.00 3.73
366 2402 1.091771 AGCCGTTCAATCAGCCATCG 61.092 55.000 0.00 0.00 0.00 3.84
367 2403 1.098050 AAGCCGTTCAATCAGCCATC 58.902 50.000 0.00 0.00 0.00 3.51
368 2404 0.813184 CAAGCCGTTCAATCAGCCAT 59.187 50.000 0.00 0.00 0.00 4.40
369 2405 0.250684 TCAAGCCGTTCAATCAGCCA 60.251 50.000 0.00 0.00 0.00 4.75
370 2406 1.098050 ATCAAGCCGTTCAATCAGCC 58.902 50.000 0.00 0.00 0.00 4.85
371 2407 2.677836 TGTATCAAGCCGTTCAATCAGC 59.322 45.455 0.00 0.00 0.00 4.26
372 2408 3.935203 ACTGTATCAAGCCGTTCAATCAG 59.065 43.478 0.00 0.00 0.00 2.90
373 2409 3.937814 ACTGTATCAAGCCGTTCAATCA 58.062 40.909 0.00 0.00 0.00 2.57
374 2410 7.815068 AGATATACTGTATCAAGCCGTTCAATC 59.185 37.037 3.09 0.00 0.00 2.67
375 2411 7.671302 AGATATACTGTATCAAGCCGTTCAAT 58.329 34.615 3.09 0.00 0.00 2.57
376 2412 7.050970 AGATATACTGTATCAAGCCGTTCAA 57.949 36.000 3.09 0.00 0.00 2.69
377 2413 6.650427 AGATATACTGTATCAAGCCGTTCA 57.350 37.500 3.09 0.00 0.00 3.18
378 2414 6.924060 ACAAGATATACTGTATCAAGCCGTTC 59.076 38.462 3.09 0.00 0.00 3.95
379 2415 6.701841 CACAAGATATACTGTATCAAGCCGTT 59.298 38.462 3.09 0.00 0.00 4.44
380 2416 6.183360 ACACAAGATATACTGTATCAAGCCGT 60.183 38.462 3.09 0.00 0.00 5.68
381 2417 6.216569 ACACAAGATATACTGTATCAAGCCG 58.783 40.000 3.09 0.00 0.00 5.52
382 2418 9.542462 TTTACACAAGATATACTGTATCAAGCC 57.458 33.333 3.09 0.00 0.00 4.35
388 2424 9.692749 CGTCCATTTACACAAGATATACTGTAT 57.307 33.333 5.53 5.53 0.00 2.29
389 2425 8.689061 ACGTCCATTTACACAAGATATACTGTA 58.311 33.333 0.00 0.00 0.00 2.74
390 2426 7.553334 ACGTCCATTTACACAAGATATACTGT 58.447 34.615 0.00 0.00 0.00 3.55
391 2427 7.921214 AGACGTCCATTTACACAAGATATACTG 59.079 37.037 13.01 0.00 0.00 2.74
392 2428 8.008513 AGACGTCCATTTACACAAGATATACT 57.991 34.615 13.01 0.00 0.00 2.12
393 2429 8.540492 CAAGACGTCCATTTACACAAGATATAC 58.460 37.037 13.01 0.00 0.00 1.47
394 2430 8.471609 TCAAGACGTCCATTTACACAAGATATA 58.528 33.333 13.01 0.00 0.00 0.86
395 2431 7.327975 TCAAGACGTCCATTTACACAAGATAT 58.672 34.615 13.01 0.00 0.00 1.63
396 2432 6.693466 TCAAGACGTCCATTTACACAAGATA 58.307 36.000 13.01 0.00 0.00 1.98
397 2433 5.547465 TCAAGACGTCCATTTACACAAGAT 58.453 37.500 13.01 0.00 0.00 2.40
398 2434 4.951254 TCAAGACGTCCATTTACACAAGA 58.049 39.130 13.01 0.00 0.00 3.02
399 2435 5.390885 CCATCAAGACGTCCATTTACACAAG 60.391 44.000 13.01 0.00 0.00 3.16
400 2436 4.454161 CCATCAAGACGTCCATTTACACAA 59.546 41.667 13.01 0.00 0.00 3.33
401 2437 4.000325 CCATCAAGACGTCCATTTACACA 59.000 43.478 13.01 0.00 0.00 3.72
402 2438 3.374058 CCCATCAAGACGTCCATTTACAC 59.626 47.826 13.01 0.00 0.00 2.90
403 2439 3.008594 ACCCATCAAGACGTCCATTTACA 59.991 43.478 13.01 0.00 0.00 2.41
404 2440 3.606687 ACCCATCAAGACGTCCATTTAC 58.393 45.455 13.01 0.00 0.00 2.01
405 2441 3.992943 ACCCATCAAGACGTCCATTTA 57.007 42.857 13.01 0.00 0.00 1.40
406 2442 2.879103 ACCCATCAAGACGTCCATTT 57.121 45.000 13.01 0.00 0.00 2.32
407 2443 2.420129 GCTACCCATCAAGACGTCCATT 60.420 50.000 13.01 0.00 0.00 3.16
408 2444 1.139058 GCTACCCATCAAGACGTCCAT 59.861 52.381 13.01 0.00 0.00 3.41
409 2445 0.535335 GCTACCCATCAAGACGTCCA 59.465 55.000 13.01 0.00 0.00 4.02
410 2446 0.535335 TGCTACCCATCAAGACGTCC 59.465 55.000 13.01 0.00 0.00 4.79
411 2447 2.604046 ATGCTACCCATCAAGACGTC 57.396 50.000 7.70 7.70 0.00 4.34
419 2455 2.882927 TACACACGATGCTACCCATC 57.117 50.000 0.00 0.00 45.58 3.51
420 2456 3.620427 TTTACACACGATGCTACCCAT 57.380 42.857 0.00 0.00 36.70 4.00
421 2457 3.527533 GATTTACACACGATGCTACCCA 58.472 45.455 0.00 0.00 0.00 4.51
422 2458 2.538449 CGATTTACACACGATGCTACCC 59.462 50.000 0.00 0.00 0.00 3.69
423 2459 3.184541 ACGATTTACACACGATGCTACC 58.815 45.455 0.00 0.00 0.00 3.18
424 2460 3.242248 GGACGATTTACACACGATGCTAC 59.758 47.826 0.00 0.00 0.00 3.58
425 2461 3.119424 TGGACGATTTACACACGATGCTA 60.119 43.478 0.00 0.00 0.00 3.49
426 2462 2.268298 GGACGATTTACACACGATGCT 58.732 47.619 0.00 0.00 0.00 3.79
427 2463 1.996898 TGGACGATTTACACACGATGC 59.003 47.619 0.00 0.00 0.00 3.91
428 2464 5.041287 AGTATGGACGATTTACACACGATG 58.959 41.667 0.00 0.00 0.00 3.84
429 2465 5.258456 AGTATGGACGATTTACACACGAT 57.742 39.130 0.00 0.00 0.00 3.73
430 2466 4.707030 AGTATGGACGATTTACACACGA 57.293 40.909 0.00 0.00 0.00 4.35
431 2467 4.624024 ACAAGTATGGACGATTTACACACG 59.376 41.667 0.00 0.00 0.00 4.49
432 2468 5.220154 CGACAAGTATGGACGATTTACACAC 60.220 44.000 0.00 0.00 34.21 3.82
433 2469 4.860352 CGACAAGTATGGACGATTTACACA 59.140 41.667 0.00 0.00 34.21 3.72
434 2470 4.860907 ACGACAAGTATGGACGATTTACAC 59.139 41.667 0.00 0.00 35.53 2.90
435 2471 4.860352 CACGACAAGTATGGACGATTTACA 59.140 41.667 0.00 0.00 35.53 2.41
436 2472 4.860907 ACACGACAAGTATGGACGATTTAC 59.139 41.667 0.00 0.00 35.53 2.01
437 2473 4.860352 CACACGACAAGTATGGACGATTTA 59.140 41.667 0.00 0.00 35.53 1.40
438 2474 3.678072 CACACGACAAGTATGGACGATTT 59.322 43.478 0.00 0.00 35.53 2.17
439 2475 3.250744 CACACGACAAGTATGGACGATT 58.749 45.455 0.00 0.00 35.53 3.34
440 2476 2.230508 ACACACGACAAGTATGGACGAT 59.769 45.455 0.00 0.00 35.53 3.73
441 2477 1.610038 ACACACGACAAGTATGGACGA 59.390 47.619 0.00 0.00 35.53 4.20
442 2478 2.060326 ACACACGACAAGTATGGACG 57.940 50.000 0.00 0.00 36.83 4.79
443 2479 4.738740 GCTATACACACGACAAGTATGGAC 59.261 45.833 0.00 0.00 29.90 4.02
444 2480 4.399934 TGCTATACACACGACAAGTATGGA 59.600 41.667 0.00 0.00 29.90 3.41
445 2481 4.678622 TGCTATACACACGACAAGTATGG 58.321 43.478 0.00 0.00 29.90 2.74
446 2482 4.207224 GCTGCTATACACACGACAAGTATG 59.793 45.833 0.00 0.00 32.49 2.39
447 2483 4.360563 GCTGCTATACACACGACAAGTAT 58.639 43.478 0.00 0.00 33.41 2.12
448 2484 3.729762 CGCTGCTATACACACGACAAGTA 60.730 47.826 0.00 0.00 0.00 2.24
449 2485 2.607187 GCTGCTATACACACGACAAGT 58.393 47.619 0.00 0.00 0.00 3.16
450 2486 1.583856 CGCTGCTATACACACGACAAG 59.416 52.381 0.00 0.00 0.00 3.16
451 2487 1.068125 ACGCTGCTATACACACGACAA 60.068 47.619 0.00 0.00 0.00 3.18
452 2488 0.524414 ACGCTGCTATACACACGACA 59.476 50.000 0.00 0.00 0.00 4.35
453 2489 1.582502 GAACGCTGCTATACACACGAC 59.417 52.381 0.00 0.00 0.00 4.34
454 2490 1.200484 TGAACGCTGCTATACACACGA 59.800 47.619 0.00 0.00 0.00 4.35
455 2491 1.624487 TGAACGCTGCTATACACACG 58.376 50.000 0.00 0.00 0.00 4.49
456 2492 2.216488 CGATGAACGCTGCTATACACAC 59.784 50.000 0.00 0.00 34.51 3.82
457 2493 2.159296 ACGATGAACGCTGCTATACACA 60.159 45.455 0.00 0.00 46.94 3.72
458 2494 2.216488 CACGATGAACGCTGCTATACAC 59.784 50.000 0.00 0.00 46.94 2.90
459 2495 2.459934 CACGATGAACGCTGCTATACA 58.540 47.619 0.00 0.00 46.94 2.29
460 2496 1.190323 GCACGATGAACGCTGCTATAC 59.810 52.381 0.00 0.00 46.94 1.47
461 2497 1.487482 GCACGATGAACGCTGCTATA 58.513 50.000 0.00 0.00 46.94 1.31
462 2498 2.301505 GCACGATGAACGCTGCTAT 58.698 52.632 0.00 0.00 46.94 2.97
463 2499 3.780693 GCACGATGAACGCTGCTA 58.219 55.556 0.00 0.00 46.94 3.49
464 2500 2.047844 AGCACGATGAACGCTGCT 60.048 55.556 6.42 6.42 45.99 4.24
465 2501 1.061799 CAAAGCACGATGAACGCTGC 61.062 55.000 0.00 0.00 46.94 5.25
466 2502 0.453282 CCAAAGCACGATGAACGCTG 60.453 55.000 0.00 0.00 46.94 5.18
467 2503 1.577328 CCCAAAGCACGATGAACGCT 61.577 55.000 0.00 0.00 46.94 5.07
468 2504 1.154225 CCCAAAGCACGATGAACGC 60.154 57.895 0.00 0.00 46.94 4.84
470 2506 0.893727 ACCCCCAAAGCACGATGAAC 60.894 55.000 0.00 0.00 0.00 3.18
471 2507 0.608035 GACCCCCAAAGCACGATGAA 60.608 55.000 0.00 0.00 0.00 2.57
472 2508 1.002624 GACCCCCAAAGCACGATGA 60.003 57.895 0.00 0.00 0.00 2.92
473 2509 0.609131 AAGACCCCCAAAGCACGATG 60.609 55.000 0.00 0.00 0.00 3.84
474 2510 0.609131 CAAGACCCCCAAAGCACGAT 60.609 55.000 0.00 0.00 0.00 3.73
475 2511 1.228124 CAAGACCCCCAAAGCACGA 60.228 57.895 0.00 0.00 0.00 4.35
476 2512 0.250553 TACAAGACCCCCAAAGCACG 60.251 55.000 0.00 0.00 0.00 5.34
477 2513 1.202891 ACTACAAGACCCCCAAAGCAC 60.203 52.381 0.00 0.00 0.00 4.40
480 2516 2.572104 AGCTACTACAAGACCCCCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
483 2519 1.621622 GGAGCTACTACAAGACCCCCA 60.622 57.143 0.00 0.00 0.00 4.96
526 2566 5.974156 TCCTACATGGATGAAGGAATTCA 57.026 39.130 7.93 0.00 40.56 2.57
540 2580 4.380867 GCAACCAAACCAAGATCCTACATG 60.381 45.833 0.00 0.00 0.00 3.21
575 2615 6.372659 GTCTTTCATCTTTGAGGACAAGCATA 59.627 38.462 0.00 0.00 36.89 3.14
621 2667 4.216257 AGTCGTTGCAACAGCATTTTATCT 59.784 37.500 28.01 8.29 38.23 1.98
622 2668 4.475944 AGTCGTTGCAACAGCATTTTATC 58.524 39.130 28.01 6.40 38.23 1.75
666 3038 3.963129 ACCAATGAAAAATCGAGCCCTA 58.037 40.909 0.00 0.00 0.00 3.53
740 3112 4.580995 TCAAATTCAAACTAAGGCCGTGAA 59.419 37.500 0.00 4.59 33.08 3.18
741 3113 4.138290 TCAAATTCAAACTAAGGCCGTGA 58.862 39.130 0.00 0.00 0.00 4.35
742 3114 4.497473 TCAAATTCAAACTAAGGCCGTG 57.503 40.909 0.00 0.00 0.00 4.94
743 3115 5.242838 TGATTCAAATTCAAACTAAGGCCGT 59.757 36.000 0.00 0.00 0.00 5.68
744 3116 5.708948 TGATTCAAATTCAAACTAAGGCCG 58.291 37.500 0.00 0.00 0.00 6.13
745 3117 6.368791 GGTTGATTCAAATTCAAACTAAGGCC 59.631 38.462 0.00 0.00 0.00 5.19
746 3118 6.368791 GGGTTGATTCAAATTCAAACTAAGGC 59.631 38.462 0.00 0.00 32.21 4.35
747 3119 7.441017 TGGGTTGATTCAAATTCAAACTAAGG 58.559 34.615 0.00 0.00 32.21 2.69
748 3120 8.885494 TTGGGTTGATTCAAATTCAAACTAAG 57.115 30.769 0.00 0.00 30.22 2.18
749 3121 9.270640 CATTGGGTTGATTCAAATTCAAACTAA 57.729 29.630 0.00 3.31 36.33 2.24
750 3122 7.877097 CCATTGGGTTGATTCAAATTCAAACTA 59.123 33.333 0.00 0.00 32.21 2.24
751 3123 6.711645 CCATTGGGTTGATTCAAATTCAAACT 59.288 34.615 0.00 0.00 32.21 2.66
752 3124 6.709846 TCCATTGGGTTGATTCAAATTCAAAC 59.290 34.615 2.09 0.00 34.93 2.93
753 3125 6.835174 TCCATTGGGTTGATTCAAATTCAAA 58.165 32.000 2.09 0.00 34.93 2.69
756 3128 6.591448 GTCTTCCATTGGGTTGATTCAAATTC 59.409 38.462 2.09 0.00 34.93 2.17
763 3135 3.833559 AGGTCTTCCATTGGGTTGATT 57.166 42.857 2.09 0.00 35.89 2.57
769 3141 5.011943 TCAAAATTCAAGGTCTTCCATTGGG 59.988 40.000 2.09 0.00 35.89 4.12
770 3142 6.100404 TCAAAATTCAAGGTCTTCCATTGG 57.900 37.500 0.00 0.00 35.89 3.16
774 3146 6.607198 AGTCTTTCAAAATTCAAGGTCTTCCA 59.393 34.615 0.00 0.00 35.89 3.53
775 3147 7.043961 AGTCTTTCAAAATTCAAGGTCTTCC 57.956 36.000 0.00 0.00 0.00 3.46
776 3148 8.932945 AAAGTCTTTCAAAATTCAAGGTCTTC 57.067 30.769 0.00 0.00 0.00 2.87
777 3149 8.753133 AGAAAGTCTTTCAAAATTCAAGGTCTT 58.247 29.630 23.93 0.00 42.10 3.01
778 3150 8.298729 AGAAAGTCTTTCAAAATTCAAGGTCT 57.701 30.769 23.93 0.00 42.10 3.85
779 3151 9.670719 CTAGAAAGTCTTTCAAAATTCAAGGTC 57.329 33.333 23.93 0.00 42.10 3.85
780 3152 8.633561 CCTAGAAAGTCTTTCAAAATTCAAGGT 58.366 33.333 23.93 4.73 42.10 3.50
781 3153 8.633561 ACCTAGAAAGTCTTTCAAAATTCAAGG 58.366 33.333 23.93 17.36 42.10 3.61
782 3154 9.670719 GACCTAGAAAGTCTTTCAAAATTCAAG 57.329 33.333 23.93 9.68 42.10 3.02
945 4939 2.754552 CTCCTGAGTCCTGAGTCTTGAG 59.245 54.545 3.81 5.57 0.00 3.02
946 4940 2.556336 CCTCCTGAGTCCTGAGTCTTGA 60.556 54.545 3.81 0.30 0.00 3.02
947 4941 1.824230 CCTCCTGAGTCCTGAGTCTTG 59.176 57.143 3.81 0.00 0.00 3.02
948 4942 1.894978 GCCTCCTGAGTCCTGAGTCTT 60.895 57.143 3.81 0.00 0.00 3.01
949 4943 0.324275 GCCTCCTGAGTCCTGAGTCT 60.324 60.000 3.81 0.00 0.00 3.24
950 4944 0.613292 TGCCTCCTGAGTCCTGAGTC 60.613 60.000 5.57 0.00 0.00 3.36
951 4945 0.042431 ATGCCTCCTGAGTCCTGAGT 59.958 55.000 5.57 0.00 0.00 3.41
952 4946 1.134461 CAATGCCTCCTGAGTCCTGAG 60.134 57.143 0.18 0.18 0.00 3.35
953 4947 0.907486 CAATGCCTCCTGAGTCCTGA 59.093 55.000 0.00 0.00 0.00 3.86
954 4948 0.747283 GCAATGCCTCCTGAGTCCTG 60.747 60.000 0.00 0.00 0.00 3.86
984 4981 2.431954 CCATGGTTGAGGCTTGAGAT 57.568 50.000 2.57 0.00 0.00 2.75
1053 5053 0.678684 TACGATGAGGTGAGGCGACA 60.679 55.000 0.00 0.00 0.00 4.35
1515 5541 0.670854 GGCTGTTGACGAGGTTCTCC 60.671 60.000 0.00 0.00 0.00 3.71
1749 5797 2.225019 GTGGAACGAGACGTAGAGTTCA 59.775 50.000 22.35 11.63 43.24 3.18
1899 5952 0.399949 ATAGAAGGGGGTCGATGCCA 60.400 55.000 0.00 0.00 0.00 4.92
1914 5967 1.839191 GGTGATGGGCTGCCATAGA 59.161 57.895 22.05 0.87 0.00 1.98
2014 6067 2.243957 TCACAGCGAACGCCAACAG 61.244 57.895 15.44 4.04 43.17 3.16
2019 6072 2.970324 TTGGTCACAGCGAACGCC 60.970 61.111 15.44 0.00 43.17 5.68
2176 6259 2.279408 GGTAGCCGAGACCTCCCT 59.721 66.667 0.00 0.00 33.86 4.20
2190 6273 0.612732 ACGACTTCACCCATCCGGTA 60.613 55.000 0.00 0.00 46.14 4.02
2648 7071 7.040686 ACCGTACACTTTATTTCTTGCTTGATT 60.041 33.333 0.00 0.00 0.00 2.57
2676 7099 2.642807 AGAAACTGCTAGGGCTTTACCA 59.357 45.455 0.00 0.00 42.05 3.25
2703 7129 4.902443 TGGTACGTCATTGCTTTTCAAA 57.098 36.364 0.00 0.00 38.34 2.69
2704 7130 6.751514 ATATGGTACGTCATTGCTTTTCAA 57.248 33.333 0.00 0.00 39.32 2.69
2705 7131 6.751514 AATATGGTACGTCATTGCTTTTCA 57.248 33.333 0.00 0.00 0.00 2.69
2706 7132 8.460831 AAAAATATGGTACGTCATTGCTTTTC 57.539 30.769 0.00 0.00 0.00 2.29
2720 7146 9.226606 CGGGCTTCATCTATTAAAAATATGGTA 57.773 33.333 0.00 0.00 0.00 3.25
2723 7149 8.237267 GTCCGGGCTTCATCTATTAAAAATATG 58.763 37.037 0.00 0.00 0.00 1.78
2724 7150 7.942341 TGTCCGGGCTTCATCTATTAAAAATAT 59.058 33.333 7.97 0.00 0.00 1.28
2725 7151 7.284074 TGTCCGGGCTTCATCTATTAAAAATA 58.716 34.615 7.97 0.00 0.00 1.40
2726 7152 6.126409 TGTCCGGGCTTCATCTATTAAAAAT 58.874 36.000 7.97 0.00 0.00 1.82
2727 7153 5.502079 TGTCCGGGCTTCATCTATTAAAAA 58.498 37.500 7.97 0.00 0.00 1.94
2732 7463 2.119495 ACTGTCCGGGCTTCATCTATT 58.881 47.619 7.97 0.00 0.00 1.73
2738 7469 2.747686 GGAACTGTCCGGGCTTCA 59.252 61.111 7.97 0.00 33.05 3.02
2763 7494 4.133820 TGTTGTGGACTGTCATAAACTGG 58.866 43.478 10.38 0.00 0.00 4.00
2766 7497 4.537015 GCTTGTTGTGGACTGTCATAAAC 58.463 43.478 10.38 10.23 0.00 2.01
2773 7504 1.540363 CGTAGGCTTGTTGTGGACTGT 60.540 52.381 0.00 0.00 0.00 3.55
2779 7510 1.442769 ATGCTCGTAGGCTTGTTGTG 58.557 50.000 0.00 0.00 0.00 3.33
2799 7530 3.120321 TGTATTCTGTCGTTGGCTTGT 57.880 42.857 0.00 0.00 0.00 3.16
2803 7534 2.030457 CCGATTGTATTCTGTCGTTGGC 59.970 50.000 0.00 0.00 32.55 4.52
2813 7544 3.001736 GCAGTCAAGAGCCGATTGTATTC 59.998 47.826 0.00 0.00 0.00 1.75
2823 7554 0.107945 ATTCTCCGCAGTCAAGAGCC 60.108 55.000 0.00 0.00 0.00 4.70
2833 7564 3.565764 AATGATTCCTCATTCTCCGCA 57.434 42.857 0.00 0.00 46.83 5.69
2845 7576 9.434559 GCGAAAACTAAAGTATGTAATGATTCC 57.565 33.333 0.00 0.00 0.00 3.01
2846 7577 9.434559 GGCGAAAACTAAAGTATGTAATGATTC 57.565 33.333 0.00 0.00 0.00 2.52
2847 7578 8.403236 GGGCGAAAACTAAAGTATGTAATGATT 58.597 33.333 0.00 0.00 0.00 2.57
2849 7580 7.107542 AGGGCGAAAACTAAAGTATGTAATGA 58.892 34.615 0.00 0.00 0.00 2.57
2850 7581 7.316544 AGGGCGAAAACTAAAGTATGTAATG 57.683 36.000 0.00 0.00 0.00 1.90
2851 7582 7.392393 ACAAGGGCGAAAACTAAAGTATGTAAT 59.608 33.333 0.00 0.00 0.00 1.89
2852 7583 6.711645 ACAAGGGCGAAAACTAAAGTATGTAA 59.288 34.615 0.00 0.00 0.00 2.41
2854 7585 5.067954 ACAAGGGCGAAAACTAAAGTATGT 58.932 37.500 0.00 0.00 0.00 2.29
2855 7586 5.622770 ACAAGGGCGAAAACTAAAGTATG 57.377 39.130 0.00 0.00 0.00 2.39
2857 7588 5.857268 AGTACAAGGGCGAAAACTAAAGTA 58.143 37.500 0.00 0.00 0.00 2.24
2858 7589 4.711399 AGTACAAGGGCGAAAACTAAAGT 58.289 39.130 0.00 0.00 0.00 2.66
2859 7590 5.237779 TCAAGTACAAGGGCGAAAACTAAAG 59.762 40.000 0.00 0.00 0.00 1.85
2862 7593 4.039488 TCTCAAGTACAAGGGCGAAAACTA 59.961 41.667 0.00 0.00 0.00 2.24
2863 7594 3.139077 CTCAAGTACAAGGGCGAAAACT 58.861 45.455 0.00 0.00 0.00 2.66
2865 7596 3.135994 GTCTCAAGTACAAGGGCGAAAA 58.864 45.455 0.00 0.00 0.00 2.29
2866 7597 2.103432 TGTCTCAAGTACAAGGGCGAAA 59.897 45.455 0.00 0.00 0.00 3.46
2867 7598 1.689813 TGTCTCAAGTACAAGGGCGAA 59.310 47.619 0.00 0.00 0.00 4.70
2868 7599 1.334160 TGTCTCAAGTACAAGGGCGA 58.666 50.000 0.00 0.00 0.00 5.54
2869 7600 2.163818 TTGTCTCAAGTACAAGGGCG 57.836 50.000 0.00 0.00 33.13 6.13
2870 7601 2.226674 GCTTTGTCTCAAGTACAAGGGC 59.773 50.000 0.00 0.00 38.05 5.19
2871 7602 3.476552 TGCTTTGTCTCAAGTACAAGGG 58.523 45.455 0.00 0.00 38.05 3.95
2872 7603 4.555511 GCTTGCTTTGTCTCAAGTACAAGG 60.556 45.833 15.62 0.00 41.15 3.61
2873 7604 4.035558 TGCTTGCTTTGTCTCAAGTACAAG 59.964 41.667 0.00 0.00 41.15 3.16
2878 7609 2.223665 GCTTGCTTGCTTTGTCTCAAGT 60.224 45.455 0.00 0.00 41.15 3.16
2879 7610 2.391879 GCTTGCTTGCTTTGTCTCAAG 58.608 47.619 0.00 0.00 41.79 3.02
2880 7611 1.067516 GGCTTGCTTGCTTTGTCTCAA 59.932 47.619 1.96 0.00 0.00 3.02
2882 7613 0.670162 TGGCTTGCTTGCTTTGTCTC 59.330 50.000 1.96 0.00 0.00 3.36
2883 7614 1.000506 CATGGCTTGCTTGCTTTGTCT 59.999 47.619 1.96 0.00 0.00 3.41
2884 7615 1.269936 ACATGGCTTGCTTGCTTTGTC 60.270 47.619 0.00 0.00 0.00 3.18
2886 7617 1.529438 CAACATGGCTTGCTTGCTTTG 59.471 47.619 0.00 0.00 0.00 2.77
2888 7619 1.000506 CTCAACATGGCTTGCTTGCTT 59.999 47.619 0.00 0.00 0.00 3.91
2889 7620 0.601558 CTCAACATGGCTTGCTTGCT 59.398 50.000 0.00 0.00 0.00 3.91
2890 7621 0.599558 TCTCAACATGGCTTGCTTGC 59.400 50.000 0.00 0.00 0.00 4.01
2891 7622 3.314553 CTTTCTCAACATGGCTTGCTTG 58.685 45.455 0.00 5.14 0.00 4.01
2892 7623 2.288640 GCTTTCTCAACATGGCTTGCTT 60.289 45.455 0.00 0.00 0.00 3.91
2893 7624 1.271656 GCTTTCTCAACATGGCTTGCT 59.728 47.619 0.00 0.00 0.00 3.91
2894 7625 1.271656 AGCTTTCTCAACATGGCTTGC 59.728 47.619 0.00 0.00 0.00 4.01
2896 7627 5.259632 AGAATAGCTTTCTCAACATGGCTT 58.740 37.500 0.00 0.00 0.00 4.35
2897 7628 4.853007 AGAATAGCTTTCTCAACATGGCT 58.147 39.130 0.00 0.00 0.00 4.75
2899 7630 8.442632 TGATAAGAATAGCTTTCTCAACATGG 57.557 34.615 10.34 0.00 38.05 3.66
2901 7632 7.042187 CGCTGATAAGAATAGCTTTCTCAACAT 60.042 37.037 10.34 4.36 38.05 2.71
2905 7636 5.907207 ACGCTGATAAGAATAGCTTTCTCA 58.093 37.500 10.34 5.70 38.05 3.27
2906 7637 5.980116 TGACGCTGATAAGAATAGCTTTCTC 59.020 40.000 10.34 0.00 38.05 2.87
2907 7638 5.907207 TGACGCTGATAAGAATAGCTTTCT 58.093 37.500 0.00 0.00 38.05 2.52
2910 7641 6.985188 TTTTGACGCTGATAAGAATAGCTT 57.015 33.333 0.00 0.00 40.68 3.74
2911 7642 6.037610 CCTTTTTGACGCTGATAAGAATAGCT 59.962 38.462 0.00 0.00 35.36 3.32
2912 7643 6.037172 TCCTTTTTGACGCTGATAAGAATAGC 59.963 38.462 0.00 0.00 0.00 2.97
2914 7645 7.915293 TTCCTTTTTGACGCTGATAAGAATA 57.085 32.000 0.00 0.00 0.00 1.75
2916 7647 6.627395 TTTCCTTTTTGACGCTGATAAGAA 57.373 33.333 0.00 0.00 0.00 2.52
3019 8271 1.568606 GATTTCGTTCGTAGGGAGCC 58.431 55.000 0.00 0.00 0.00 4.70
3155 8497 6.100004 GGCTTTTTAGTTCTTATGGGCTTTC 58.900 40.000 0.00 0.00 0.00 2.62
3195 8586 6.075099 CGTGCAAACGAACAATGTCTATTTTT 60.075 34.615 0.00 0.00 34.64 1.94
3590 11182 0.031178 CCTGCCAGCAAAAGTGACAC 59.969 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.