Multiple sequence alignment - TraesCS5B01G043400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G043400 chr5B 100.000 4508 0 0 1 4508 48416812 48421319 0.000000e+00 8325.0
1 TraesCS5B01G043400 chr5B 85.851 1258 106 35 2733 3970 6853987 6852782 0.000000e+00 1271.0
2 TraesCS5B01G043400 chr5B 91.750 897 62 10 741 1626 6836749 6835854 0.000000e+00 1236.0
3 TraesCS5B01G043400 chr5B 91.518 896 66 10 741 1626 24629638 24628743 0.000000e+00 1225.0
4 TraesCS5B01G043400 chr5B 88.990 990 73 20 732 1687 24675826 24674839 0.000000e+00 1192.0
5 TraesCS5B01G043400 chr5B 89.430 965 72 17 732 1667 6856107 6855144 0.000000e+00 1190.0
6 TraesCS5B01G043400 chr5B 81.794 1483 167 63 1 1430 48323108 48321676 0.000000e+00 1147.0
7 TraesCS5B01G043400 chr5B 80.923 1127 142 37 2750 3842 48317943 48316856 0.000000e+00 822.0
8 TraesCS5B01G043400 chr5B 82.647 899 107 30 2853 3732 24627538 24626670 0.000000e+00 750.0
9 TraesCS5B01G043400 chr5B 83.715 743 102 14 2821 3552 6669210 6669944 0.000000e+00 684.0
10 TraesCS5B01G043400 chr5B 82.685 797 80 33 3194 3970 24666694 24665936 0.000000e+00 654.0
11 TraesCS5B01G043400 chr5B 82.999 747 98 20 2821 3552 24391454 24392186 0.000000e+00 649.0
12 TraesCS5B01G043400 chr5B 83.878 490 36 20 184 644 6837297 6836822 1.160000e-115 427.0
13 TraesCS5B01G043400 chr5B 80.369 596 74 18 237 793 6856757 6856166 3.250000e-111 412.0
14 TraesCS5B01G043400 chr5B 78.707 634 80 25 237 819 24676501 24675872 5.510000e-99 372.0
15 TraesCS5B01G043400 chr5B 85.241 332 31 9 217 531 24640406 24640076 4.350000e-85 326.0
16 TraesCS5B01G043400 chr5B 84.291 261 34 7 1948 2207 462121562 462121308 9.680000e-62 248.0
17 TraesCS5B01G043400 chr5B 88.824 170 17 2 1900 2068 6835681 6835513 1.640000e-49 207.0
18 TraesCS5B01G043400 chr5B 88.554 166 17 2 1904 2068 24628565 24628401 2.750000e-47 200.0
19 TraesCS5B01G043400 chr5B 83.957 187 24 5 1984 2168 6674421 6674603 1.670000e-39 174.0
20 TraesCS5B01G043400 chr5B 93.162 117 7 1 1 116 6837420 6837304 2.160000e-38 171.0
21 TraesCS5B01G043400 chr5B 89.844 128 11 2 1 128 24676694 24676569 3.610000e-36 163.0
22 TraesCS5B01G043400 chr5B 88.281 128 13 2 1 128 6856953 6856828 7.810000e-33 152.0
23 TraesCS5B01G043400 chr5B 75.269 186 42 2 4156 4339 87981972 87982155 8.030000e-13 86.1
24 TraesCS5B01G043400 chr5B 89.231 65 5 1 4151 4213 20702829 20702893 3.740000e-11 80.5
25 TraesCS5B01G043400 chr5B 94.118 51 3 0 4163 4213 585262631 585262581 1.340000e-10 78.7
26 TraesCS5B01G043400 chr5B 88.525 61 5 1 4153 4213 418194605 418194547 6.260000e-09 73.1
27 TraesCS5B01G043400 chr4A 92.967 1948 87 19 2241 4170 17803502 17805417 0.000000e+00 2793.0
28 TraesCS5B01G043400 chr4A 95.286 1506 41 9 184 1675 17801667 17803156 0.000000e+00 2361.0
29 TraesCS5B01G043400 chr4A 88.785 963 75 20 732 1667 17852014 17852970 0.000000e+00 1149.0
30 TraesCS5B01G043400 chr4A 84.820 863 100 26 533 1377 17847786 17846937 0.000000e+00 839.0
31 TraesCS5B01G043400 chr4A 80.940 1128 150 33 2749 3842 17846378 17845282 0.000000e+00 832.0
32 TraesCS5B01G043400 chr4A 83.985 818 84 27 522 1317 17759971 17759179 0.000000e+00 741.0
33 TraesCS5B01G043400 chr4A 97.191 356 10 0 1824 2179 17803146 17803501 1.790000e-168 603.0
34 TraesCS5B01G043400 chr4A 84.870 423 32 13 1 422 17760859 17760468 9.090000e-107 398.0
35 TraesCS5B01G043400 chr4A 78.989 633 82 21 216 816 17851352 17851965 7.070000e-103 385.0
36 TraesCS5B01G043400 chr4A 83.165 297 45 4 4167 4461 556761898 556761605 2.670000e-67 267.0
37 TraesCS5B01G043400 chr4A 96.581 117 3 1 1 116 17801545 17801661 4.600000e-45 193.0
38 TraesCS5B01G043400 chr4A 81.407 199 35 1 2013 2211 240370522 240370718 1.300000e-35 161.0
39 TraesCS5B01G043400 chr4A 87.500 128 14 2 1 128 17851174 17851299 3.630000e-31 147.0
40 TraesCS5B01G043400 chr4A 94.444 36 2 0 4424 4459 521034776 521034741 6.300000e-04 56.5
41 TraesCS5B01G043400 chr5A 92.248 1935 96 20 2256 4170 3980869 3978969 0.000000e+00 2693.0
42 TraesCS5B01G043400 chr5A 91.069 851 63 9 2806 3648 4047652 4048497 0.000000e+00 1138.0
43 TraesCS5B01G043400 chr5A 88.242 876 57 18 732 1567 4044338 4045207 0.000000e+00 1005.0
44 TraesCS5B01G043400 chr5A 82.597 1132 129 38 2670 3780 4610261 4611345 0.000000e+00 937.0
45 TraesCS5B01G043400 chr5A 84.524 840 106 20 533 1357 4035119 4034289 0.000000e+00 809.0
46 TraesCS5B01G043400 chr5A 88.950 362 39 1 1904 2265 3981640 3981280 3.200000e-121 446.0
47 TraesCS5B01G043400 chr5A 77.133 844 113 42 1 816 4043498 4044289 2.510000e-112 416.0
48 TraesCS5B01G043400 chr5A 82.766 499 43 15 178 644 3983112 3982625 5.430000e-109 405.0
49 TraesCS5B01G043400 chr5A 78.743 668 91 27 168 810 4007050 4007691 2.530000e-107 399.0
50 TraesCS5B01G043400 chr5A 86.800 250 18 9 178 413 4035559 4035311 9.620000e-67 265.0
51 TraesCS5B01G043400 chr5A 96.053 152 5 1 1671 1822 470679251 470679401 3.480000e-61 246.0
52 TraesCS5B01G043400 chr5A 84.071 226 32 4 1943 2167 485847147 485847369 9.820000e-52 215.0
53 TraesCS5B01G043400 chr5A 88.034 117 12 1 48 164 4006964 4007078 2.190000e-28 137.0
54 TraesCS5B01G043400 chr3B 83.984 743 100 14 2821 3552 62670627 62671361 0.000000e+00 695.0
55 TraesCS5B01G043400 chr3B 90.706 269 21 2 4190 4456 271191060 271190794 5.550000e-94 355.0
56 TraesCS5B01G043400 chr3B 96.000 50 2 0 4164 4213 76678178 76678227 1.040000e-11 82.4
57 TraesCS5B01G043400 chrUn 89.963 269 23 2 4190 4456 66416288 66416554 1.200000e-90 344.0
58 TraesCS5B01G043400 chrUn 86.942 291 35 3 4168 4456 87983401 87983112 1.560000e-84 324.0
59 TraesCS5B01G043400 chr6B 89.591 269 24 3 4190 4456 508787865 508787599 5.590000e-89 339.0
60 TraesCS5B01G043400 chr2B 89.591 269 24 2 4190 4456 700390651 700390917 5.590000e-89 339.0
61 TraesCS5B01G043400 chr2B 95.973 149 6 0 1674 1822 312294655 312294507 4.510000e-60 243.0
62 TraesCS5B01G043400 chr2B 94.444 54 3 0 4160 4213 500939537 500939590 2.890000e-12 84.2
63 TraesCS5B01G043400 chr2B 92.857 56 3 1 4158 4213 777385615 777385561 3.740000e-11 80.5
64 TraesCS5B01G043400 chr7D 86.268 284 35 3 4169 4451 10119866 10120146 5.670000e-79 305.0
65 TraesCS5B01G043400 chr3D 86.861 274 28 6 4169 4437 554058383 554058113 2.640000e-77 300.0
66 TraesCS5B01G043400 chr3D 95.973 149 6 0 1674 1822 507038581 507038729 4.510000e-60 243.0
67 TraesCS5B01G043400 chr7A 84.247 292 43 2 4166 4456 515174865 515174576 9.550000e-72 281.0
68 TraesCS5B01G043400 chr2A 83.959 293 39 6 4169 4456 303859439 303859150 1.600000e-69 274.0
69 TraesCS5B01G043400 chr2A 95.395 152 6 1 1671 1822 700986237 700986087 1.620000e-59 241.0
70 TraesCS5B01G043400 chr2A 94.268 157 7 2 1667 1822 722494951 722495106 5.830000e-59 239.0
71 TraesCS5B01G043400 chr2A 95.238 126 6 0 4310 4435 43946649 43946524 2.750000e-47 200.0
72 TraesCS5B01G043400 chr2A 93.130 131 9 0 4309 4439 157931449 157931579 4.600000e-45 193.0
73 TraesCS5B01G043400 chr2A 91.912 136 10 1 4311 4445 249722834 249722969 5.950000e-44 189.0
74 TraesCS5B01G043400 chr1B 99.329 149 1 0 1674 1822 347665511 347665659 2.070000e-68 270.0
75 TraesCS5B01G043400 chr1A 94.340 159 9 0 1664 1822 254349086 254348928 1.250000e-60 244.0
76 TraesCS5B01G043400 chr2D 95.364 151 7 0 1672 1822 27073490 27073340 1.620000e-59 241.0
77 TraesCS5B01G043400 chr2D 95.364 151 6 1 1672 1822 73737372 73737223 5.830000e-59 239.0
78 TraesCS5B01G043400 chr5D 84.834 211 27 5 1943 2152 384873399 384873605 1.640000e-49 207.0
79 TraesCS5B01G043400 chr4D 85.638 188 25 1 2024 2211 206061703 206061518 3.560000e-46 196.0
80 TraesCS5B01G043400 chr4B 80.476 210 36 4 2013 2222 258770695 258770899 6.040000e-34 156.0
81 TraesCS5B01G043400 chr3A 97.826 46 1 0 4168 4213 1003756 1003711 3.740000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G043400 chr5B 48416812 48421319 4507 False 8325.000000 8325 100.000000 1 4508 1 chr5B.!!$F5 4507
1 TraesCS5B01G043400 chr5B 48316856 48323108 6252 True 984.500000 1147 81.358500 1 3842 2 chr5B.!!$R10 3841
2 TraesCS5B01G043400 chr5B 6852782 6856953 4171 True 756.250000 1271 85.982750 1 3970 4 chr5B.!!$R7 3969
3 TraesCS5B01G043400 chr5B 24626670 24629638 2968 True 725.000000 1225 87.573000 741 3732 3 chr5B.!!$R8 2991
4 TraesCS5B01G043400 chr5B 6669210 6669944 734 False 684.000000 684 83.715000 2821 3552 1 chr5B.!!$F1 731
5 TraesCS5B01G043400 chr5B 24665936 24666694 758 True 654.000000 654 82.685000 3194 3970 1 chr5B.!!$R2 776
6 TraesCS5B01G043400 chr5B 24391454 24392186 732 False 649.000000 649 82.999000 2821 3552 1 chr5B.!!$F4 731
7 TraesCS5B01G043400 chr5B 24674839 24676694 1855 True 575.666667 1192 85.847000 1 1687 3 chr5B.!!$R9 1686
8 TraesCS5B01G043400 chr5B 6835513 6837420 1907 True 510.250000 1236 89.403500 1 2068 4 chr5B.!!$R6 2067
9 TraesCS5B01G043400 chr4A 17801545 17805417 3872 False 1487.500000 2793 95.506250 1 4170 4 chr4A.!!$F2 4169
10 TraesCS5B01G043400 chr4A 17845282 17847786 2504 True 835.500000 839 82.880000 533 3842 2 chr4A.!!$R4 3309
11 TraesCS5B01G043400 chr4A 17759179 17760859 1680 True 569.500000 741 84.427500 1 1317 2 chr4A.!!$R3 1316
12 TraesCS5B01G043400 chr4A 17851174 17852970 1796 False 560.333333 1149 85.091333 1 1667 3 chr4A.!!$F3 1666
13 TraesCS5B01G043400 chr5A 3978969 3983112 4143 True 1181.333333 2693 87.988000 178 4170 3 chr5A.!!$R1 3992
14 TraesCS5B01G043400 chr5A 4610261 4611345 1084 False 937.000000 937 82.597000 2670 3780 1 chr5A.!!$F1 1110
15 TraesCS5B01G043400 chr5A 4043498 4048497 4999 False 853.000000 1138 85.481333 1 3648 3 chr5A.!!$F5 3647
16 TraesCS5B01G043400 chr5A 4034289 4035559 1270 True 537.000000 809 85.662000 178 1357 2 chr5A.!!$R2 1179
17 TraesCS5B01G043400 chr5A 4006964 4007691 727 False 268.000000 399 83.388500 48 810 2 chr5A.!!$F4 762
18 TraesCS5B01G043400 chr3B 62670627 62671361 734 False 695.000000 695 83.984000 2821 3552 1 chr3B.!!$F1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 802 0.036732 TGTGTGCTGGCCTTTCCTAG 59.963 55.000 3.32 0.0 35.26 3.02 F
1061 1819 2.241160 TGGCCATGGTGATGATAATGC 58.759 47.619 14.67 0.0 0.00 3.56 F
1520 2346 3.186283 TGGGTGCTGAGTAGGGATTAAA 58.814 45.455 0.00 0.0 0.00 1.52 F
3364 8920 1.676006 CCATCCATTCCTTTGTACCGC 59.324 52.381 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 5925 2.336478 CGTCTCTCGACCACCTGCT 61.336 63.158 0.0 0.0 42.86 4.24 R
2768 8103 4.524328 CCCTTCCACAATAAGCAGTCTTTT 59.476 41.667 0.0 0.0 33.85 2.27 R
3438 8994 3.102052 ACGGTGCTTCGTTCTTCTTTA 57.898 42.857 0.0 0.0 40.85 1.85 R
4311 9905 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 160 4.391869 TGCTTTGCAGCCTCTCTG 57.608 55.556 0.00 0.00 46.74 3.35
159 161 1.453235 TGCTTTGCAGCCTCTCTGT 59.547 52.632 0.00 0.00 46.74 3.41
160 162 0.179009 TGCTTTGCAGCCTCTCTGTT 60.179 50.000 0.00 0.00 46.74 3.16
161 163 0.957362 GCTTTGCAGCCTCTCTGTTT 59.043 50.000 0.00 0.00 44.66 2.83
162 164 1.339291 GCTTTGCAGCCTCTCTGTTTT 59.661 47.619 0.00 0.00 44.66 2.43
163 165 2.861360 GCTTTGCAGCCTCTCTGTTTTG 60.861 50.000 0.00 0.00 44.66 2.44
164 166 2.346766 TTGCAGCCTCTCTGTTTTGA 57.653 45.000 0.00 0.00 44.66 2.69
165 167 2.346766 TGCAGCCTCTCTGTTTTGAA 57.653 45.000 0.00 0.00 44.66 2.69
166 168 2.867624 TGCAGCCTCTCTGTTTTGAAT 58.132 42.857 0.00 0.00 44.66 2.57
167 169 2.816087 TGCAGCCTCTCTGTTTTGAATC 59.184 45.455 0.00 0.00 44.66 2.52
168 170 2.816087 GCAGCCTCTCTGTTTTGAATCA 59.184 45.455 0.00 0.00 44.66 2.57
169 171 3.119919 GCAGCCTCTCTGTTTTGAATCAG 60.120 47.826 0.00 0.00 44.66 2.90
170 172 3.080319 AGCCTCTCTGTTTTGAATCAGC 58.920 45.455 0.00 0.00 0.00 4.26
171 173 2.163211 GCCTCTCTGTTTTGAATCAGCC 59.837 50.000 0.00 0.00 0.00 4.85
172 174 3.683802 CCTCTCTGTTTTGAATCAGCCT 58.316 45.455 0.00 0.00 0.00 4.58
173 175 3.439476 CCTCTCTGTTTTGAATCAGCCTG 59.561 47.826 0.00 0.00 0.00 4.85
174 176 3.415212 TCTCTGTTTTGAATCAGCCTGG 58.585 45.455 0.00 0.00 0.00 4.45
175 177 1.888512 TCTGTTTTGAATCAGCCTGGC 59.111 47.619 11.65 11.65 0.00 4.85
176 178 1.891150 CTGTTTTGAATCAGCCTGGCT 59.109 47.619 17.22 17.22 40.77 4.75
177 179 2.298163 CTGTTTTGAATCAGCCTGGCTT 59.702 45.455 20.79 4.37 36.40 4.35
178 180 2.036217 TGTTTTGAATCAGCCTGGCTTG 59.964 45.455 20.79 14.65 36.40 4.01
179 181 0.604578 TTTGAATCAGCCTGGCTTGC 59.395 50.000 20.79 4.70 36.40 4.01
180 182 0.540133 TTGAATCAGCCTGGCTTGCA 60.540 50.000 20.79 7.84 36.40 4.08
181 183 1.246056 TGAATCAGCCTGGCTTGCAC 61.246 55.000 20.79 11.67 36.40 4.57
205 210 6.953520 ACCCTCTGTTTTGGATTTGATTGATA 59.046 34.615 0.00 0.00 0.00 2.15
206 211 7.454380 ACCCTCTGTTTTGGATTTGATTGATAA 59.546 33.333 0.00 0.00 0.00 1.75
291 332 0.613260 CTTCTGGGTCGATTGGGACA 59.387 55.000 0.00 0.00 38.70 4.02
502 618 8.757982 ATCTCCGGTGTAAATCTAACTAGTTA 57.242 34.615 14.52 14.52 0.00 2.24
540 798 2.307934 TTTTTGTGTGCTGGCCTTTC 57.692 45.000 3.32 0.00 0.00 2.62
541 799 0.463620 TTTTGTGTGCTGGCCTTTCC 59.536 50.000 3.32 0.00 0.00 3.13
544 802 0.036732 TGTGTGCTGGCCTTTCCTAG 59.963 55.000 3.32 0.00 35.26 3.02
846 1601 6.895756 TCTACTATCAGCCCCATTACGATATT 59.104 38.462 0.00 0.00 0.00 1.28
861 1616 9.162793 CATTACGATATTGCTTTCTTGAATGTC 57.837 33.333 0.00 0.00 0.00 3.06
1061 1819 2.241160 TGGCCATGGTGATGATAATGC 58.759 47.619 14.67 0.00 0.00 3.56
1319 2104 7.656948 TCAATTGTTTGGATTCATGGAAGAAAC 59.343 33.333 5.13 0.00 33.44 2.78
1472 2288 6.471146 TGCCCACTTTTATGCAATTTAACAT 58.529 32.000 0.00 0.00 0.00 2.71
1520 2346 3.186283 TGGGTGCTGAGTAGGGATTAAA 58.814 45.455 0.00 0.00 0.00 1.52
1606 4109 6.100404 TCTGAATTTCTTTTCCATGTTGGG 57.900 37.500 0.00 0.00 38.32 4.12
1675 5198 8.712363 CAAATGCACCACATCAGTATATAGTAC 58.288 37.037 0.00 0.00 38.34 2.73
1676 5199 7.782897 ATGCACCACATCAGTATATAGTACT 57.217 36.000 0.00 0.00 31.52 2.73
1677 5200 7.215719 TGCACCACATCAGTATATAGTACTC 57.784 40.000 0.00 0.00 0.00 2.59
1678 5201 6.208797 TGCACCACATCAGTATATAGTACTCC 59.791 42.308 0.00 0.00 0.00 3.85
1679 5202 6.350277 GCACCACATCAGTATATAGTACTCCC 60.350 46.154 0.00 0.00 0.00 4.30
1680 5203 6.948886 CACCACATCAGTATATAGTACTCCCT 59.051 42.308 0.00 0.00 0.00 4.20
1681 5204 7.121463 CACCACATCAGTATATAGTACTCCCTC 59.879 44.444 0.00 0.00 0.00 4.30
1682 5205 6.603997 CCACATCAGTATATAGTACTCCCTCC 59.396 46.154 0.00 0.00 0.00 4.30
1683 5206 6.316640 CACATCAGTATATAGTACTCCCTCCG 59.683 46.154 0.00 0.00 0.00 4.63
1685 5208 6.445451 TCAGTATATAGTACTCCCTCCGTT 57.555 41.667 0.00 0.00 0.00 4.44
1686 5209 6.471146 TCAGTATATAGTACTCCCTCCGTTC 58.529 44.000 0.00 0.00 0.00 3.95
1688 5211 5.551189 AGTATATAGTACTCCCTCCGTTCCT 59.449 44.000 0.00 0.00 0.00 3.36
1689 5212 6.732862 AGTATATAGTACTCCCTCCGTTCCTA 59.267 42.308 0.00 0.00 0.00 2.94
1690 5213 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
1691 5214 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1692 5215 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1694 5217 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1695 5218 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1697 5220 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1698 5221 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1699 5222 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1700 5223 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1701 5224 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1702 5225 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1704 5227 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1722 5245 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
1724 5247 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
1725 5248 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
1726 5249 5.719563 TGTAGAGATTTCACTATGGACCACA 59.280 40.000 0.00 0.00 0.00 4.17
1727 5250 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
1728 5251 7.563556 TGTAGAGATTTCACTATGGACCACATA 59.436 37.037 0.00 0.00 41.03 2.29
1729 5252 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
1730 5253 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
1743 5323 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
1744 5324 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
1745 5325 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
1746 5326 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
1747 5327 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
1748 5328 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
1749 5329 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1750 5330 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1755 5335 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
1784 5364 8.883731 AGATTCTTTCATTTTACTCCGTATGTG 58.116 33.333 0.00 0.00 0.00 3.21
1785 5365 6.978343 TCTTTCATTTTACTCCGTATGTGG 57.022 37.500 0.00 0.00 0.00 4.17
1786 5366 6.469410 TCTTTCATTTTACTCCGTATGTGGT 58.531 36.000 0.00 0.00 0.00 4.16
1788 5368 5.670792 TCATTTTACTCCGTATGTGGTCT 57.329 39.130 0.00 0.00 0.00 3.85
1789 5369 6.778834 TCATTTTACTCCGTATGTGGTCTA 57.221 37.500 0.00 0.00 0.00 2.59
1790 5370 7.356089 TCATTTTACTCCGTATGTGGTCTAT 57.644 36.000 0.00 0.00 0.00 1.98
1793 5373 7.886629 TTTTACTCCGTATGTGGTCTATAGT 57.113 36.000 0.00 0.00 0.00 2.12
1794 5374 6.872628 TTACTCCGTATGTGGTCTATAGTG 57.127 41.667 0.00 0.00 0.00 2.74
1795 5375 5.045012 ACTCCGTATGTGGTCTATAGTGA 57.955 43.478 0.00 0.00 0.00 3.41
1796 5376 5.443283 ACTCCGTATGTGGTCTATAGTGAA 58.557 41.667 0.00 0.00 0.00 3.18
1798 5378 6.550108 ACTCCGTATGTGGTCTATAGTGAAAT 59.450 38.462 0.00 0.00 0.00 2.17
1800 5380 6.776116 TCCGTATGTGGTCTATAGTGAAATCT 59.224 38.462 0.00 0.00 0.00 2.40
1801 5381 7.040617 TCCGTATGTGGTCTATAGTGAAATCTC 60.041 40.741 0.00 0.00 0.00 2.75
1802 5382 7.040340 CCGTATGTGGTCTATAGTGAAATCTCT 60.040 40.741 0.00 0.00 0.00 3.10
1803 5383 8.018520 CGTATGTGGTCTATAGTGAAATCTCTC 58.981 40.741 0.00 0.00 0.00 3.20
1804 5384 6.716934 TGTGGTCTATAGTGAAATCTCTCC 57.283 41.667 0.00 0.00 0.00 3.71
1805 5385 6.194967 TGTGGTCTATAGTGAAATCTCTCCA 58.805 40.000 0.00 0.00 0.00 3.86
1806 5386 6.667848 TGTGGTCTATAGTGAAATCTCTCCAA 59.332 38.462 0.00 0.00 0.00 3.53
1807 5387 7.180229 TGTGGTCTATAGTGAAATCTCTCCAAA 59.820 37.037 0.00 0.00 0.00 3.28
1808 5388 7.708752 GTGGTCTATAGTGAAATCTCTCCAAAG 59.291 40.741 0.00 0.00 0.00 2.77
1809 5389 7.619698 TGGTCTATAGTGAAATCTCTCCAAAGA 59.380 37.037 0.00 0.00 0.00 2.52
1810 5390 7.923878 GGTCTATAGTGAAATCTCTCCAAAGAC 59.076 40.741 0.00 0.00 0.00 3.01
1811 5391 8.691797 GTCTATAGTGAAATCTCTCCAAAGACT 58.308 37.037 0.00 0.00 0.00 3.24
1812 5392 9.261035 TCTATAGTGAAATCTCTCCAAAGACTT 57.739 33.333 0.00 0.00 0.00 3.01
1822 5402 7.366847 TCTCTCCAAAGACTTATATTGAGGG 57.633 40.000 0.00 0.00 0.00 4.30
1824 5404 7.288852 TCTCTCCAAAGACTTATATTGAGGGAG 59.711 40.741 0.00 0.00 39.56 4.30
1825 5405 6.903534 TCTCCAAAGACTTATATTGAGGGAGT 59.096 38.462 0.00 0.00 39.30 3.85
1826 5406 8.065627 TCTCCAAAGACTTATATTGAGGGAGTA 58.934 37.037 0.00 0.00 39.30 2.59
1828 5408 9.892444 TCCAAAGACTTATATTGAGGGAGTATA 57.108 33.333 0.00 0.00 0.00 1.47
2143 5925 5.373222 CGGGAATAGGTGGTTTTCATATCA 58.627 41.667 0.00 0.00 0.00 2.15
2180 6478 3.305964 ACGATTAACTGTCCGATATGCG 58.694 45.455 0.00 0.00 40.47 4.73
2207 6505 9.845305 GAGATTAACTCACCGATATTTTTAACG 57.155 33.333 0.00 0.00 44.36 3.18
2233 6918 8.247562 GGTGCAATTTAATGACCATAAGTTACA 58.752 33.333 0.00 0.00 0.00 2.41
2320 7425 5.212532 TGAACAAGTGGCTGCAATAAATT 57.787 34.783 0.50 0.00 0.00 1.82
2410 7537 7.011763 CGAGAGTACAAAATGGTTCATGATGAT 59.988 37.037 0.00 0.00 0.00 2.45
2463 7611 7.538575 ACTTTATAATTCTGCTTCGCATGTTT 58.461 30.769 0.00 0.00 38.13 2.83
2548 7736 7.730332 ACAATTTTTCCTGAAACCTAGGAGATT 59.270 33.333 17.98 7.37 44.65 2.40
2653 7846 4.869861 ACAGTCTTTGTGCATTTTTCAACC 59.130 37.500 0.00 0.00 38.99 3.77
2657 7850 6.039616 GTCTTTGTGCATTTTTCAACCACTA 58.960 36.000 0.00 0.00 0.00 2.74
2663 7856 7.215789 TGTGCATTTTTCAACCACTATGAATT 58.784 30.769 0.00 0.00 36.72 2.17
2768 8103 6.946340 TGTTAGATAGAAGCTGAATTCCACA 58.054 36.000 2.27 0.00 0.00 4.17
2774 8109 5.444663 AGAAGCTGAATTCCACAAAAGAC 57.555 39.130 2.27 0.00 0.00 3.01
2919 8438 3.036819 TCTAGAGCCTGCTCATGTTGAT 58.963 45.455 20.38 1.39 44.99 2.57
3150 8673 5.193728 ACAATTGAGGTGGGTGTATTAGGAT 59.806 40.000 13.59 0.00 0.00 3.24
3211 8736 2.202566 GATAGTTGGTAGCTTCACGGC 58.797 52.381 0.00 0.00 0.00 5.68
3307 8863 9.066892 TGCTGAAGTTCATATTTCTGTAAGTTT 57.933 29.630 5.91 0.00 33.76 2.66
3364 8920 1.676006 CCATCCATTCCTTTGTACCGC 59.324 52.381 0.00 0.00 0.00 5.68
3372 8928 5.007332 CCATTCCTTTGTACCGCAGTATTAC 59.993 44.000 0.00 0.00 0.00 1.89
3405 8961 6.230472 TGCTAGCACTAAGAGATTTGTTTCA 58.770 36.000 14.93 0.00 0.00 2.69
3532 9088 5.388408 ACACGTCTCCTCTTTTAACTAGG 57.612 43.478 0.00 0.00 0.00 3.02
3536 9092 3.775866 GTCTCCTCTTTTAACTAGGCCCT 59.224 47.826 0.00 0.00 0.00 5.19
3751 9318 8.366671 AGTATGCTGATATTTTCGGAGTTTAC 57.633 34.615 0.00 0.00 31.81 2.01
3790 9361 3.052036 GGTGTGCAGCAAGTAAATTGTG 58.948 45.455 0.00 0.00 41.29 3.33
3791 9362 3.490761 GGTGTGCAGCAAGTAAATTGTGT 60.491 43.478 0.00 0.00 41.29 3.72
3842 9422 2.957006 AGCAAAGCATCCATCTTCCATC 59.043 45.455 0.00 0.00 0.00 3.51
3861 9441 8.519799 TTCCATCTGTAGACTTGAAAGTTTTT 57.480 30.769 0.00 0.00 39.88 1.94
3864 9444 7.013274 CCATCTGTAGACTTGAAAGTTTTTGGA 59.987 37.037 0.00 0.00 39.88 3.53
3900 9482 5.048504 ACAAGAGATGTATGTTTGTGCTTGG 60.049 40.000 0.00 0.00 41.63 3.61
3925 9516 4.457949 AGGTTTGTCGAACTTTGAGTTGTT 59.542 37.500 2.95 0.00 38.80 2.83
4005 9596 7.866729 TCACGTTGTGTTATGATTTGTTACAT 58.133 30.769 0.00 0.00 34.79 2.29
4011 9602 8.535690 TGTGTTATGATTTGTTACATGTCGTA 57.464 30.769 0.00 0.00 0.00 3.43
4068 9659 3.438087 CAGGCTACTGGATGTTGTTTCTG 59.562 47.826 0.00 0.00 41.13 3.02
4071 9662 3.189287 GCTACTGGATGTTGTTTCTGTGG 59.811 47.826 0.00 0.00 0.00 4.17
4072 9663 3.297134 ACTGGATGTTGTTTCTGTGGT 57.703 42.857 0.00 0.00 0.00 4.16
4073 9664 2.951642 ACTGGATGTTGTTTCTGTGGTG 59.048 45.455 0.00 0.00 0.00 4.17
4074 9665 2.294233 CTGGATGTTGTTTCTGTGGTGG 59.706 50.000 0.00 0.00 0.00 4.61
4075 9666 1.613437 GGATGTTGTTTCTGTGGTGGG 59.387 52.381 0.00 0.00 0.00 4.61
4076 9667 1.000274 GATGTTGTTTCTGTGGTGGGC 60.000 52.381 0.00 0.00 0.00 5.36
4077 9668 1.040339 TGTTGTTTCTGTGGTGGGCC 61.040 55.000 0.00 0.00 0.00 5.80
4094 9685 1.811195 CCGTGGGCGTACTGTGATA 59.189 57.895 0.00 0.00 36.15 2.15
4136 9727 9.104965 CCACATATATGTACTCTAGTCTCTAGC 57.895 40.741 17.86 0.00 39.39 3.42
4175 9769 9.975218 AACATCTTTATTTGTAATGTACTCCCT 57.025 29.630 0.00 0.00 30.71 4.20
4176 9770 9.614792 ACATCTTTATTTGTAATGTACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
4177 9771 9.838339 CATCTTTATTTGTAATGTACTCCCTCT 57.162 33.333 0.00 0.00 0.00 3.69
4178 9772 9.838339 ATCTTTATTTGTAATGTACTCCCTCTG 57.162 33.333 0.00 0.00 0.00 3.35
4179 9773 8.822805 TCTTTATTTGTAATGTACTCCCTCTGT 58.177 33.333 0.00 0.00 0.00 3.41
4180 9774 9.449719 CTTTATTTGTAATGTACTCCCTCTGTT 57.550 33.333 0.00 0.00 0.00 3.16
4181 9775 9.444600 TTTATTTGTAATGTACTCCCTCTGTTC 57.555 33.333 0.00 0.00 0.00 3.18
4182 9776 5.416271 TTGTAATGTACTCCCTCTGTTCC 57.584 43.478 0.00 0.00 0.00 3.62
4183 9777 4.684724 TGTAATGTACTCCCTCTGTTCCT 58.315 43.478 0.00 0.00 0.00 3.36
4184 9778 5.834460 TGTAATGTACTCCCTCTGTTCCTA 58.166 41.667 0.00 0.00 0.00 2.94
4185 9779 6.258354 TGTAATGTACTCCCTCTGTTCCTAA 58.742 40.000 0.00 0.00 0.00 2.69
4186 9780 6.727231 TGTAATGTACTCCCTCTGTTCCTAAA 59.273 38.462 0.00 0.00 0.00 1.85
4187 9781 6.893020 AATGTACTCCCTCTGTTCCTAAAT 57.107 37.500 0.00 0.00 0.00 1.40
4188 9782 5.677319 TGTACTCCCTCTGTTCCTAAATG 57.323 43.478 0.00 0.00 0.00 2.32
4189 9783 5.091552 TGTACTCCCTCTGTTCCTAAATGT 58.908 41.667 0.00 0.00 0.00 2.71
4190 9784 6.258354 TGTACTCCCTCTGTTCCTAAATGTA 58.742 40.000 0.00 0.00 0.00 2.29
4191 9785 6.727231 TGTACTCCCTCTGTTCCTAAATGTAA 59.273 38.462 0.00 0.00 0.00 2.41
4192 9786 6.301169 ACTCCCTCTGTTCCTAAATGTAAG 57.699 41.667 0.00 0.00 0.00 2.34
4193 9787 5.785940 ACTCCCTCTGTTCCTAAATGTAAGT 59.214 40.000 0.00 0.00 0.00 2.24
4194 9788 6.070710 ACTCCCTCTGTTCCTAAATGTAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
4195 9789 6.023603 TCCCTCTGTTCCTAAATGTAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
4196 9790 6.500751 TCCCTCTGTTCCTAAATGTAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
4197 9791 7.017254 TCCCTCTGTTCCTAAATGTAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
4198 9792 7.119846 CCCTCTGTTCCTAAATGTAAGTCTTTG 59.880 40.741 0.00 0.00 0.00 2.77
4199 9793 7.661847 CCTCTGTTCCTAAATGTAAGTCTTTGT 59.338 37.037 0.00 0.00 0.00 2.83
4200 9794 9.706691 CTCTGTTCCTAAATGTAAGTCTTTGTA 57.293 33.333 0.00 0.00 0.00 2.41
4201 9795 9.706691 TCTGTTCCTAAATGTAAGTCTTTGTAG 57.293 33.333 0.00 0.00 0.00 2.74
4202 9796 9.706691 CTGTTCCTAAATGTAAGTCTTTGTAGA 57.293 33.333 0.00 0.00 0.00 2.59
4203 9797 9.706691 TGTTCCTAAATGTAAGTCTTTGTAGAG 57.293 33.333 0.00 0.00 0.00 2.43
4204 9798 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
4210 9804 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
4211 9805 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
4212 9806 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
4213 9807 8.740906 TGTAAGTCTTTGTAGAGATTCCACTAG 58.259 37.037 0.00 0.00 0.00 2.57
4214 9808 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
4215 9809 6.257586 AGTCTTTGTAGAGATTCCACTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
4216 9810 6.153680 AGTCTTTGTAGAGATTCCACTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
4230 9824 5.571784 CACTAGGTGGACTACATACGAAA 57.428 43.478 0.00 0.00 0.00 3.46
4231 9825 5.338365 CACTAGGTGGACTACATACGAAAC 58.662 45.833 0.00 0.00 0.00 2.78
4232 9826 5.012239 ACTAGGTGGACTACATACGAAACA 58.988 41.667 0.00 0.00 0.00 2.83
4233 9827 4.877378 AGGTGGACTACATACGAAACAA 57.123 40.909 0.00 0.00 0.00 2.83
4234 9828 5.217978 AGGTGGACTACATACGAAACAAA 57.782 39.130 0.00 0.00 0.00 2.83
4235 9829 5.613329 AGGTGGACTACATACGAAACAAAA 58.387 37.500 0.00 0.00 0.00 2.44
4236 9830 6.235664 AGGTGGACTACATACGAAACAAAAT 58.764 36.000 0.00 0.00 0.00 1.82
4237 9831 6.148811 AGGTGGACTACATACGAAACAAAATG 59.851 38.462 0.00 0.00 0.00 2.32
4238 9832 6.148150 GGTGGACTACATACGAAACAAAATGA 59.852 38.462 0.00 0.00 0.00 2.57
4239 9833 7.308109 GGTGGACTACATACGAAACAAAATGAA 60.308 37.037 0.00 0.00 0.00 2.57
4240 9834 8.234546 GTGGACTACATACGAAACAAAATGAAT 58.765 33.333 0.00 0.00 0.00 2.57
4241 9835 8.233868 TGGACTACATACGAAACAAAATGAATG 58.766 33.333 0.00 0.00 0.00 2.67
4242 9836 8.447833 GGACTACATACGAAACAAAATGAATGA 58.552 33.333 0.00 0.00 0.00 2.57
4243 9837 9.820229 GACTACATACGAAACAAAATGAATGAA 57.180 29.630 0.00 0.00 0.00 2.57
4246 9840 8.687824 ACATACGAAACAAAATGAATGAATCC 57.312 30.769 0.00 0.00 0.00 3.01
4247 9841 8.303156 ACATACGAAACAAAATGAATGAATCCA 58.697 29.630 0.00 0.00 0.00 3.41
4248 9842 9.304731 CATACGAAACAAAATGAATGAATCCAT 57.695 29.630 0.00 0.00 33.66 3.41
4250 9844 8.687824 ACGAAACAAAATGAATGAATCCATAC 57.312 30.769 0.00 0.00 31.59 2.39
4251 9845 8.522830 ACGAAACAAAATGAATGAATCCATACT 58.477 29.630 0.00 0.00 31.59 2.12
4252 9846 9.357652 CGAAACAAAATGAATGAATCCATACTT 57.642 29.630 0.00 0.00 31.59 2.24
4262 9856 9.970395 TGAATGAATCCATACTTAAAATGCATC 57.030 29.630 0.00 0.00 31.59 3.91
4275 9869 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
4319 9913 8.075761 TCTCTACAAAAACTTATACTCCCTCC 57.924 38.462 0.00 0.00 0.00 4.30
4320 9914 6.870769 TCTACAAAAACTTATACTCCCTCCG 58.129 40.000 0.00 0.00 0.00 4.63
4321 9915 5.494390 ACAAAAACTTATACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
4322 9916 5.485620 ACAAAAACTTATACTCCCTCCGTC 58.514 41.667 0.00 0.00 0.00 4.79
4323 9917 4.750021 AAAACTTATACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
4324 9918 2.378378 ACTTATACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
4325 9919 1.572415 ACTTATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
4326 9920 2.023695 ACTTATACTCCCTCCGTCCCAA 60.024 50.000 0.00 0.00 0.00 4.12
4327 9921 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
4328 9922 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4329 9923 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4330 9924 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4331 9925 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4332 9926 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4333 9927 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4334 9928 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4335 9929 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4336 9930 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4337 9931 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4338 9932 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4339 9933 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4340 9934 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
4341 9935 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
4342 9936 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
4343 9937 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
4344 9938 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
4345 9939 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4346 9940 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4347 9941 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4348 9942 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4355 9949 9.569167 TTCTTGTCTTAGATTTGTCTACATACG 57.431 33.333 0.00 0.00 0.00 3.06
4356 9950 8.953313 TCTTGTCTTAGATTTGTCTACATACGA 58.047 33.333 0.00 0.00 0.00 3.43
4357 9951 9.569167 CTTGTCTTAGATTTGTCTACATACGAA 57.431 33.333 0.00 0.00 0.00 3.85
4359 9953 9.516314 TGTCTTAGATTTGTCTACATACGAATG 57.484 33.333 0.00 0.00 34.30 2.67
4428 10022 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
4429 10023 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
4430 10024 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
4431 10025 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
4432 10026 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
4433 10027 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
4434 10028 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
4435 10029 2.907042 AGAATTTTGAGACGGAGGGAGT 59.093 45.455 0.00 0.00 0.00 3.85
4436 10030 4.094476 AGAATTTTGAGACGGAGGGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
4437 10031 4.717280 AGAATTTTGAGACGGAGGGAGTAT 59.283 41.667 0.00 0.00 0.00 2.12
4438 10032 5.189934 AGAATTTTGAGACGGAGGGAGTATT 59.810 40.000 0.00 0.00 0.00 1.89
4439 10033 4.903045 TTTTGAGACGGAGGGAGTATTT 57.097 40.909 0.00 0.00 0.00 1.40
4440 10034 6.555463 ATTTTGAGACGGAGGGAGTATTTA 57.445 37.500 0.00 0.00 0.00 1.40
4441 10035 5.593679 TTTGAGACGGAGGGAGTATTTAG 57.406 43.478 0.00 0.00 0.00 1.85
4442 10036 3.563223 TGAGACGGAGGGAGTATTTAGG 58.437 50.000 0.00 0.00 0.00 2.69
4443 10037 3.203710 TGAGACGGAGGGAGTATTTAGGA 59.796 47.826 0.00 0.00 0.00 2.94
4444 10038 4.213513 GAGACGGAGGGAGTATTTAGGAA 58.786 47.826 0.00 0.00 0.00 3.36
4445 10039 3.959449 AGACGGAGGGAGTATTTAGGAAC 59.041 47.826 0.00 0.00 0.00 3.62
4446 10040 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
4447 10041 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
4448 10042 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
4449 10043 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
4450 10044 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
4451 10045 3.052338 AGGGAGTATTTAGGAACGGAGGA 60.052 47.826 0.00 0.00 0.00 3.71
4452 10046 3.708121 GGGAGTATTTAGGAACGGAGGAA 59.292 47.826 0.00 0.00 0.00 3.36
4453 10047 4.202233 GGGAGTATTTAGGAACGGAGGAAG 60.202 50.000 0.00 0.00 0.00 3.46
4454 10048 4.405036 GGAGTATTTAGGAACGGAGGAAGT 59.595 45.833 0.00 0.00 0.00 3.01
4455 10049 5.595952 GGAGTATTTAGGAACGGAGGAAGTA 59.404 44.000 0.00 0.00 0.00 2.24
4456 10050 6.267242 GGAGTATTTAGGAACGGAGGAAGTAT 59.733 42.308 0.00 0.00 0.00 2.12
4457 10051 7.449704 GGAGTATTTAGGAACGGAGGAAGTATA 59.550 40.741 0.00 0.00 0.00 1.47
4458 10052 8.953223 AGTATTTAGGAACGGAGGAAGTATAT 57.047 34.615 0.00 0.00 0.00 0.86
4461 10055 8.953223 ATTTAGGAACGGAGGAAGTATATAGT 57.047 34.615 0.00 0.00 0.00 2.12
4462 10056 7.756395 TTAGGAACGGAGGAAGTATATAGTG 57.244 40.000 0.00 0.00 0.00 2.74
4463 10057 4.523558 AGGAACGGAGGAAGTATATAGTGC 59.476 45.833 0.00 0.00 0.00 4.40
4464 10058 4.321824 GGAACGGAGGAAGTATATAGTGCC 60.322 50.000 6.48 6.48 0.00 5.01
4465 10059 3.840991 ACGGAGGAAGTATATAGTGCCA 58.159 45.455 15.94 0.00 0.00 4.92
4466 10060 4.220724 ACGGAGGAAGTATATAGTGCCAA 58.779 43.478 15.94 0.00 0.00 4.52
4467 10061 4.652421 ACGGAGGAAGTATATAGTGCCAAA 59.348 41.667 15.94 0.00 0.00 3.28
4468 10062 5.221461 ACGGAGGAAGTATATAGTGCCAAAG 60.221 44.000 15.94 8.86 0.00 2.77
4469 10063 5.221461 CGGAGGAAGTATATAGTGCCAAAGT 60.221 44.000 15.94 0.00 0.00 2.66
4470 10064 6.015688 CGGAGGAAGTATATAGTGCCAAAGTA 60.016 42.308 15.94 0.00 0.00 2.24
4471 10065 7.379750 GGAGGAAGTATATAGTGCCAAAGTAG 58.620 42.308 15.94 0.00 0.00 2.57
4472 10066 7.015389 GGAGGAAGTATATAGTGCCAAAGTAGT 59.985 40.741 15.94 0.00 0.00 2.73
4473 10067 9.075678 GAGGAAGTATATAGTGCCAAAGTAGTA 57.924 37.037 15.94 0.00 0.00 1.82
4474 10068 9.430399 AGGAAGTATATAGTGCCAAAGTAGTAA 57.570 33.333 15.94 0.00 0.00 2.24
4475 10069 9.473640 GGAAGTATATAGTGCCAAAGTAGTAAC 57.526 37.037 9.52 0.00 0.00 2.50
4476 10070 9.473640 GAAGTATATAGTGCCAAAGTAGTAACC 57.526 37.037 0.00 0.00 0.00 2.85
4477 10071 7.960262 AGTATATAGTGCCAAAGTAGTAACCC 58.040 38.462 0.00 0.00 0.00 4.11
4478 10072 6.818281 ATATAGTGCCAAAGTAGTAACCCA 57.182 37.500 0.00 0.00 0.00 4.51
4479 10073 5.710409 ATAGTGCCAAAGTAGTAACCCAT 57.290 39.130 0.00 0.00 0.00 4.00
4480 10074 4.382386 AGTGCCAAAGTAGTAACCCATT 57.618 40.909 0.00 0.00 0.00 3.16
4481 10075 4.079253 AGTGCCAAAGTAGTAACCCATTG 58.921 43.478 0.00 0.00 0.00 2.82
4482 10076 3.824443 GTGCCAAAGTAGTAACCCATTGT 59.176 43.478 0.00 0.00 0.00 2.71
4483 10077 3.823873 TGCCAAAGTAGTAACCCATTGTG 59.176 43.478 0.00 0.00 0.00 3.33
4484 10078 4.076394 GCCAAAGTAGTAACCCATTGTGA 58.924 43.478 0.00 0.00 0.00 3.58
4485 10079 4.156008 GCCAAAGTAGTAACCCATTGTGAG 59.844 45.833 0.00 0.00 0.00 3.51
4486 10080 5.556915 CCAAAGTAGTAACCCATTGTGAGA 58.443 41.667 0.00 0.00 0.00 3.27
4487 10081 6.180472 CCAAAGTAGTAACCCATTGTGAGAT 58.820 40.000 0.00 0.00 0.00 2.75
4488 10082 6.659242 CCAAAGTAGTAACCCATTGTGAGATT 59.341 38.462 0.00 0.00 0.00 2.40
4489 10083 7.148239 CCAAAGTAGTAACCCATTGTGAGATTC 60.148 40.741 0.00 0.00 0.00 2.52
4490 10084 6.875972 AGTAGTAACCCATTGTGAGATTCT 57.124 37.500 0.00 0.00 0.00 2.40
4491 10085 6.879400 AGTAGTAACCCATTGTGAGATTCTC 58.121 40.000 6.73 6.73 0.00 2.87
4492 10086 5.104259 AGTAACCCATTGTGAGATTCTCC 57.896 43.478 11.12 3.61 0.00 3.71
4493 10087 2.698855 ACCCATTGTGAGATTCTCCG 57.301 50.000 11.12 0.00 0.00 4.63
4494 10088 1.909302 ACCCATTGTGAGATTCTCCGT 59.091 47.619 11.12 0.00 0.00 4.69
4495 10089 2.305927 ACCCATTGTGAGATTCTCCGTT 59.694 45.455 11.12 0.00 0.00 4.44
4496 10090 2.939103 CCCATTGTGAGATTCTCCGTTC 59.061 50.000 11.12 0.83 0.00 3.95
4497 10091 3.369892 CCCATTGTGAGATTCTCCGTTCT 60.370 47.826 11.12 0.00 0.00 3.01
4498 10092 3.620374 CCATTGTGAGATTCTCCGTTCTG 59.380 47.826 11.12 3.07 0.00 3.02
4499 10093 2.370281 TGTGAGATTCTCCGTTCTGC 57.630 50.000 11.12 0.00 0.00 4.26
4500 10094 1.066858 TGTGAGATTCTCCGTTCTGCC 60.067 52.381 11.12 0.00 0.00 4.85
4501 10095 1.066858 GTGAGATTCTCCGTTCTGCCA 60.067 52.381 11.12 0.00 0.00 4.92
4502 10096 1.833630 TGAGATTCTCCGTTCTGCCAT 59.166 47.619 11.12 0.00 0.00 4.40
4503 10097 3.031013 TGAGATTCTCCGTTCTGCCATA 58.969 45.455 11.12 0.00 0.00 2.74
4504 10098 3.450817 TGAGATTCTCCGTTCTGCCATAA 59.549 43.478 11.12 0.00 0.00 1.90
4505 10099 4.101585 TGAGATTCTCCGTTCTGCCATAAT 59.898 41.667 11.12 0.00 0.00 1.28
4506 10100 4.384056 AGATTCTCCGTTCTGCCATAATG 58.616 43.478 0.00 0.00 0.00 1.90
4507 10101 3.904800 TTCTCCGTTCTGCCATAATGA 57.095 42.857 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 155 3.415212 CCAGGCTGATTCAAAACAGAGA 58.585 45.455 17.94 0.00 36.38 3.10
154 156 2.094854 GCCAGGCTGATTCAAAACAGAG 60.095 50.000 17.94 0.00 36.38 3.35
155 157 1.888512 GCCAGGCTGATTCAAAACAGA 59.111 47.619 17.94 0.00 36.38 3.41
156 158 1.891150 AGCCAGGCTGATTCAAAACAG 59.109 47.619 15.24 0.00 37.57 3.16
157 159 1.999648 AGCCAGGCTGATTCAAAACA 58.000 45.000 15.24 0.00 37.57 2.83
158 160 2.680577 CAAGCCAGGCTGATTCAAAAC 58.319 47.619 17.05 0.00 39.62 2.43
159 161 1.001181 GCAAGCCAGGCTGATTCAAAA 59.999 47.619 17.05 0.00 39.62 2.44
160 162 0.604578 GCAAGCCAGGCTGATTCAAA 59.395 50.000 17.05 0.00 39.62 2.69
161 163 0.540133 TGCAAGCCAGGCTGATTCAA 60.540 50.000 17.05 0.00 39.62 2.69
162 164 1.075305 TGCAAGCCAGGCTGATTCA 59.925 52.632 17.05 7.90 39.62 2.57
163 165 1.509923 GTGCAAGCCAGGCTGATTC 59.490 57.895 17.05 5.12 39.62 2.52
164 166 1.980772 GGTGCAAGCCAGGCTGATT 60.981 57.895 17.05 7.62 39.62 2.57
165 167 2.362120 GGTGCAAGCCAGGCTGAT 60.362 61.111 17.05 0.00 39.62 2.90
174 176 0.032540 CCAAAACAGAGGGTGCAAGC 59.967 55.000 0.00 0.00 0.00 4.01
175 177 1.691196 TCCAAAACAGAGGGTGCAAG 58.309 50.000 0.00 0.00 0.00 4.01
176 178 2.380064 ATCCAAAACAGAGGGTGCAA 57.620 45.000 0.00 0.00 0.00 4.08
177 179 2.364970 CAAATCCAAAACAGAGGGTGCA 59.635 45.455 0.00 0.00 0.00 4.57
178 180 2.627699 TCAAATCCAAAACAGAGGGTGC 59.372 45.455 0.00 0.00 0.00 5.01
179 181 5.010922 TCAATCAAATCCAAAACAGAGGGTG 59.989 40.000 0.00 0.00 0.00 4.61
180 182 5.147032 TCAATCAAATCCAAAACAGAGGGT 58.853 37.500 0.00 0.00 0.00 4.34
181 183 5.726980 TCAATCAAATCCAAAACAGAGGG 57.273 39.130 0.00 0.00 0.00 4.30
205 210 6.664515 CACGGTACACACATTAAGTTGATTT 58.335 36.000 0.00 0.00 0.00 2.17
206 211 5.334569 GCACGGTACACACATTAAGTTGATT 60.335 40.000 0.00 0.00 0.00 2.57
291 332 0.771755 AGGCCGGTTTTCTTCTCCTT 59.228 50.000 1.90 0.00 0.00 3.36
537 781 6.919115 GCCGTTTTCATTTTGTTACTAGGAAA 59.081 34.615 0.00 0.00 0.00 3.13
540 798 5.627780 GTGCCGTTTTCATTTTGTTACTAGG 59.372 40.000 0.00 0.00 0.00 3.02
541 799 6.202937 TGTGCCGTTTTCATTTTGTTACTAG 58.797 36.000 0.00 0.00 0.00 2.57
544 802 5.665232 CATGTGCCGTTTTCATTTTGTTAC 58.335 37.500 0.00 0.00 0.00 2.50
846 1601 3.250762 CCACTTCGACATTCAAGAAAGCA 59.749 43.478 0.00 0.00 0.00 3.91
1319 2104 3.064207 TGAGAGGAAAAACGAACCGATG 58.936 45.455 0.00 0.00 0.00 3.84
1451 2267 9.810231 GAACAATGTTAAATTGCATAAAAGTGG 57.190 29.630 0.00 0.00 32.55 4.00
1472 2288 6.481976 CAGATATGCTACCAATTACCGAACAA 59.518 38.462 0.00 0.00 0.00 2.83
1675 5198 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1676 5199 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1677 5200 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1678 5201 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1679 5202 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1695 5218 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
1697 5220 7.492994 GGTCCATAGTGAAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 0.00 3.01
1698 5221 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
1699 5222 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
1700 5223 7.103641 GTGGTCCATAGTGAAATCTCTACAAA 58.896 38.462 0.00 0.00 0.00 2.83
1701 5224 6.212589 TGTGGTCCATAGTGAAATCTCTACAA 59.787 38.462 0.00 0.00 0.00 2.41
1702 5225 5.719563 TGTGGTCCATAGTGAAATCTCTACA 59.280 40.000 0.00 0.00 0.00 2.74
1704 5227 7.255486 CGTATGTGGTCCATAGTGAAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
1706 5229 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
1707 5230 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
1708 5231 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
1709 5232 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
1710 5233 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
1711 5234 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
1712 5235 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
1713 5236 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
1714 5237 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
1716 5239 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
1718 5241 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
1719 5242 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
1720 5243 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
1722 5245 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
1728 5251 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
1729 5252 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
1774 5354 6.387041 TTTCACTATAGACCACATACGGAG 57.613 41.667 6.78 0.00 0.00 4.63
1775 5355 6.776116 AGATTTCACTATAGACCACATACGGA 59.224 38.462 6.78 0.00 0.00 4.69
1776 5356 6.982852 AGATTTCACTATAGACCACATACGG 58.017 40.000 6.78 0.00 0.00 4.02
1777 5357 7.877003 AGAGATTTCACTATAGACCACATACG 58.123 38.462 6.78 0.00 0.00 3.06
1778 5358 8.301002 GGAGAGATTTCACTATAGACCACATAC 58.699 40.741 6.78 0.00 0.00 2.39
1779 5359 8.004801 TGGAGAGATTTCACTATAGACCACATA 58.995 37.037 6.78 0.00 0.00 2.29
1781 5361 6.194967 TGGAGAGATTTCACTATAGACCACA 58.805 40.000 6.78 0.00 0.00 4.17
1782 5362 6.716934 TGGAGAGATTTCACTATAGACCAC 57.283 41.667 6.78 0.00 0.00 4.16
1783 5363 7.619698 TCTTTGGAGAGATTTCACTATAGACCA 59.380 37.037 6.78 0.00 0.00 4.02
1784 5364 7.923878 GTCTTTGGAGAGATTTCACTATAGACC 59.076 40.741 6.78 0.00 32.29 3.85
1785 5365 8.691797 AGTCTTTGGAGAGATTTCACTATAGAC 58.308 37.037 6.78 8.58 35.52 2.59
1786 5366 8.830915 AGTCTTTGGAGAGATTTCACTATAGA 57.169 34.615 6.78 0.00 31.07 1.98
1795 5375 9.844257 CCTCAATATAAGTCTTTGGAGAGATTT 57.156 33.333 0.00 0.00 31.07 2.17
1796 5376 8.435982 CCCTCAATATAAGTCTTTGGAGAGATT 58.564 37.037 0.00 0.00 31.07 2.40
1798 5378 7.132805 TCCCTCAATATAAGTCTTTGGAGAGA 58.867 38.462 0.00 0.00 31.07 3.10
1800 5380 6.903534 ACTCCCTCAATATAAGTCTTTGGAGA 59.096 38.462 0.00 0.00 38.30 3.71
1801 5381 7.130681 ACTCCCTCAATATAAGTCTTTGGAG 57.869 40.000 0.00 0.00 41.08 3.86
1802 5382 8.798975 ATACTCCCTCAATATAAGTCTTTGGA 57.201 34.615 0.00 0.00 0.00 3.53
1828 5408 7.990886 GCTGCTCTCCTATGTAGTATCTAGTAT 59.009 40.741 0.00 0.00 0.00 2.12
1829 5409 7.038231 TGCTGCTCTCCTATGTAGTATCTAGTA 60.038 40.741 0.00 0.00 0.00 1.82
1830 5410 6.177610 GCTGCTCTCCTATGTAGTATCTAGT 58.822 44.000 0.00 0.00 0.00 2.57
1831 5411 6.176896 TGCTGCTCTCCTATGTAGTATCTAG 58.823 44.000 0.00 0.00 0.00 2.43
2143 5925 2.336478 CGTCTCTCGACCACCTGCT 61.336 63.158 0.00 0.00 42.86 4.24
2207 6505 8.247562 TGTAACTTATGGTCATTAAATTGCACC 58.752 33.333 0.00 0.00 0.00 5.01
2520 7676 6.369629 TCCTAGGTTTCAGGAAAAATTGTCA 58.630 36.000 9.08 0.00 39.28 3.58
2526 7682 7.782644 TGAAAATCTCCTAGGTTTCAGGAAAAA 59.217 33.333 17.14 0.00 41.66 1.94
2632 7825 4.869861 GTGGTTGAAAAATGCACAAAGACT 59.130 37.500 0.00 0.00 0.00 3.24
2640 7833 9.585099 GATAATTCATAGTGGTTGAAAAATGCA 57.415 29.630 0.00 0.00 36.72 3.96
2657 7850 9.032624 GGAGGAATCATTCATTGGATAATTCAT 57.967 33.333 3.66 0.00 0.00 2.57
2663 7856 4.921991 AGGGGAGGAATCATTCATTGGATA 59.078 41.667 0.00 0.00 0.00 2.59
2768 8103 4.524328 CCCTTCCACAATAAGCAGTCTTTT 59.476 41.667 0.00 0.00 33.85 2.27
2774 8109 4.589908 AGTAACCCTTCCACAATAAGCAG 58.410 43.478 0.00 0.00 0.00 4.24
3307 8863 8.658609 GCAAACCGCCGTTATAATATAGAAATA 58.341 33.333 0.00 0.00 32.94 1.40
3438 8994 3.102052 ACGGTGCTTCGTTCTTCTTTA 57.898 42.857 0.00 0.00 40.85 1.85
3532 9088 8.870075 ATCTGGATAATAATTTGTAGAAGGGC 57.130 34.615 0.00 0.00 0.00 5.19
3751 9318 2.745281 CACCACCTATTAACCAACACGG 59.255 50.000 0.00 0.00 42.50 4.94
3755 9324 3.150767 TGCACACCACCTATTAACCAAC 58.849 45.455 0.00 0.00 0.00 3.77
3790 9361 7.440523 AACATGGATGAAGTCTGTTTTCTAC 57.559 36.000 0.00 0.00 0.00 2.59
3791 9362 7.939039 AGAAACATGGATGAAGTCTGTTTTCTA 59.061 33.333 0.00 0.00 36.14 2.10
3842 9422 9.586435 AAAATCCAAAAACTTTCAAGTCTACAG 57.414 29.630 0.00 0.00 38.57 2.74
3874 9456 6.005583 AGCACAAACATACATCTCTTGTTG 57.994 37.500 0.00 0.00 39.87 3.33
3900 9482 5.064325 ACAACTCAAAGTTCGACAAACCTAC 59.936 40.000 0.00 0.00 36.03 3.18
3925 9516 5.668471 TCCACATTCTTTGCAAAATGTCAA 58.332 33.333 21.24 12.51 42.62 3.18
3994 9585 6.807230 AGAGTCTGTACGACATGTAACAAATC 59.193 38.462 16.44 4.68 45.32 2.17
4005 9596 2.552743 CACTTCCAGAGTCTGTACGACA 59.447 50.000 18.74 0.98 45.32 4.35
4011 9602 0.683973 CAGCCACTTCCAGAGTCTGT 59.316 55.000 18.74 0.00 36.10 3.41
4075 9666 2.287457 TATCACAGTACGCCCACGGC 62.287 60.000 0.00 0.00 46.75 5.68
4076 9667 0.248907 CTATCACAGTACGCCCACGG 60.249 60.000 0.00 0.00 46.04 4.94
4087 9678 8.240682 GTGGTCATAGCTAAGTATCTATCACAG 58.759 40.741 0.00 0.00 0.00 3.66
4170 9764 6.155393 AGACTTACATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
4171 9765 6.023603 AGACTTACATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
4172 9766 6.301169 AGACTTACATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
4173 9767 7.661847 ACAAAGACTTACATTTAGGAACAGAGG 59.338 37.037 0.00 0.00 0.00 3.69
4174 9768 8.608844 ACAAAGACTTACATTTAGGAACAGAG 57.391 34.615 0.00 0.00 0.00 3.35
4175 9769 9.706691 CTACAAAGACTTACATTTAGGAACAGA 57.293 33.333 0.00 0.00 0.00 3.41
4176 9770 9.706691 TCTACAAAGACTTACATTTAGGAACAG 57.293 33.333 0.00 0.00 0.00 3.16
4177 9771 9.706691 CTCTACAAAGACTTACATTTAGGAACA 57.293 33.333 0.00 0.00 0.00 3.18
4178 9772 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
4184 9778 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
4185 9779 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
4186 9780 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
4187 9781 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
4188 9782 8.192110 CCTAGTGGAATCTCTACAAAGACTTAC 58.808 40.741 0.00 0.00 34.57 2.34
4189 9783 7.894364 ACCTAGTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
4190 9784 6.726764 ACCTAGTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
4191 9785 6.153680 CACCTAGTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
4192 9786 6.334202 CACCTAGTGGAATCTCTACAAAGAC 58.666 44.000 0.00 0.00 37.04 3.01
4193 9787 6.531503 CACCTAGTGGAATCTCTACAAAGA 57.468 41.667 0.00 0.00 37.04 2.52
4208 9802 5.106038 TGTTTCGTATGTAGTCCACCTAGTG 60.106 44.000 0.00 0.00 0.00 2.74
4209 9803 5.012239 TGTTTCGTATGTAGTCCACCTAGT 58.988 41.667 0.00 0.00 0.00 2.57
4210 9804 5.571784 TGTTTCGTATGTAGTCCACCTAG 57.428 43.478 0.00 0.00 0.00 3.02
4211 9805 5.981088 TTGTTTCGTATGTAGTCCACCTA 57.019 39.130 0.00 0.00 0.00 3.08
4212 9806 4.877378 TTGTTTCGTATGTAGTCCACCT 57.123 40.909 0.00 0.00 0.00 4.00
4213 9807 5.927954 TTTTGTTTCGTATGTAGTCCACC 57.072 39.130 0.00 0.00 0.00 4.61
4214 9808 7.124347 TCATTTTGTTTCGTATGTAGTCCAC 57.876 36.000 0.00 0.00 0.00 4.02
4215 9809 7.731882 TTCATTTTGTTTCGTATGTAGTCCA 57.268 32.000 0.00 0.00 0.00 4.02
4216 9810 8.447833 TCATTCATTTTGTTTCGTATGTAGTCC 58.552 33.333 0.00 0.00 0.00 3.85
4217 9811 9.820229 TTCATTCATTTTGTTTCGTATGTAGTC 57.180 29.630 0.00 0.00 0.00 2.59
4220 9814 9.781834 GGATTCATTCATTTTGTTTCGTATGTA 57.218 29.630 0.00 0.00 0.00 2.29
4221 9815 8.303156 TGGATTCATTCATTTTGTTTCGTATGT 58.697 29.630 0.00 0.00 0.00 2.29
4222 9816 8.686397 TGGATTCATTCATTTTGTTTCGTATG 57.314 30.769 0.00 0.00 0.00 2.39
4224 9818 9.781834 GTATGGATTCATTCATTTTGTTTCGTA 57.218 29.630 0.00 0.00 34.96 3.43
4225 9819 8.522830 AGTATGGATTCATTCATTTTGTTTCGT 58.477 29.630 0.00 0.00 34.96 3.85
4226 9820 8.915871 AGTATGGATTCATTCATTTTGTTTCG 57.084 30.769 0.00 0.00 34.96 3.46
4236 9830 9.970395 GATGCATTTTAAGTATGGATTCATTCA 57.030 29.630 0.00 0.00 34.69 2.57
4249 9843 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
4253 9847 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
4256 9850 9.355916 ACTACATACGGATGTATATAGATGCAT 57.644 33.333 20.64 0.00 45.42 3.96
4257 9851 8.747538 ACTACATACGGATGTATATAGATGCA 57.252 34.615 20.64 0.00 45.42 3.96
4258 9852 9.666626 GAACTACATACGGATGTATATAGATGC 57.333 37.037 20.64 0.00 45.42 3.91
4293 9887 8.706521 GGAGGGAGTATAAGTTTTTGTAGAGAT 58.293 37.037 0.00 0.00 0.00 2.75
4294 9888 7.147949 CGGAGGGAGTATAAGTTTTTGTAGAGA 60.148 40.741 0.00 0.00 0.00 3.10
4295 9889 6.979238 CGGAGGGAGTATAAGTTTTTGTAGAG 59.021 42.308 0.00 0.00 0.00 2.43
4296 9890 6.438425 ACGGAGGGAGTATAAGTTTTTGTAGA 59.562 38.462 0.00 0.00 0.00 2.59
4297 9891 6.637657 ACGGAGGGAGTATAAGTTTTTGTAG 58.362 40.000 0.00 0.00 0.00 2.74
4298 9892 6.351286 GGACGGAGGGAGTATAAGTTTTTGTA 60.351 42.308 0.00 0.00 0.00 2.41
4299 9893 5.485620 GACGGAGGGAGTATAAGTTTTTGT 58.514 41.667 0.00 0.00 0.00 2.83
4300 9894 4.874396 GGACGGAGGGAGTATAAGTTTTTG 59.126 45.833 0.00 0.00 0.00 2.44
4301 9895 4.080695 GGGACGGAGGGAGTATAAGTTTTT 60.081 45.833 0.00 0.00 0.00 1.94
4302 9896 3.453717 GGGACGGAGGGAGTATAAGTTTT 59.546 47.826 0.00 0.00 0.00 2.43
4303 9897 3.036819 GGGACGGAGGGAGTATAAGTTT 58.963 50.000 0.00 0.00 0.00 2.66
4304 9898 2.023695 TGGGACGGAGGGAGTATAAGTT 60.024 50.000 0.00 0.00 0.00 2.66
4305 9899 1.572415 TGGGACGGAGGGAGTATAAGT 59.428 52.381 0.00 0.00 0.00 2.24
4306 9900 2.376695 TGGGACGGAGGGAGTATAAG 57.623 55.000 0.00 0.00 0.00 1.73
4307 9901 2.852714 TTGGGACGGAGGGAGTATAA 57.147 50.000 0.00 0.00 0.00 0.98
4308 9902 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
4309 9903 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
4310 9904 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4311 9905 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
4312 9906 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4313 9907 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4314 9908 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4315 9909 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4316 9910 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4317 9911 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4318 9912 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
4319 9913 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4320 9914 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4321 9915 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4322 9916 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
4329 9923 9.569167 CGTATGTAGACAAATCTAAGACAAGAA 57.431 33.333 0.00 0.00 39.20 2.52
4330 9924 8.953313 TCGTATGTAGACAAATCTAAGACAAGA 58.047 33.333 0.00 0.00 39.20 3.02
4331 9925 9.569167 TTCGTATGTAGACAAATCTAAGACAAG 57.431 33.333 0.00 0.00 39.20 3.16
4333 9927 9.516314 CATTCGTATGTAGACAAATCTAAGACA 57.484 33.333 0.00 0.00 39.20 3.41
4334 9928 9.517609 ACATTCGTATGTAGACAAATCTAAGAC 57.482 33.333 5.81 0.00 43.12 3.01
4402 9996 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
4403 9997 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
4404 9998 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
4405 9999 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
4406 10000 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
4407 10001 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
4408 10002 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
4409 10003 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
4410 10004 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
4411 10005 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
4412 10006 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
4413 10007 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
4414 10008 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
4415 10009 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
4416 10010 5.437191 AATACTCCCTCCGTCTCAAAATT 57.563 39.130 0.00 0.00 0.00 1.82
4417 10011 5.437191 AAATACTCCCTCCGTCTCAAAAT 57.563 39.130 0.00 0.00 0.00 1.82
4418 10012 4.903045 AAATACTCCCTCCGTCTCAAAA 57.097 40.909 0.00 0.00 0.00 2.44
4419 10013 4.404715 CCTAAATACTCCCTCCGTCTCAAA 59.595 45.833 0.00 0.00 0.00 2.69
4420 10014 3.958798 CCTAAATACTCCCTCCGTCTCAA 59.041 47.826 0.00 0.00 0.00 3.02
4421 10015 3.203710 TCCTAAATACTCCCTCCGTCTCA 59.796 47.826 0.00 0.00 0.00 3.27
4422 10016 3.830121 TCCTAAATACTCCCTCCGTCTC 58.170 50.000 0.00 0.00 0.00 3.36
4423 10017 3.959449 GTTCCTAAATACTCCCTCCGTCT 59.041 47.826 0.00 0.00 0.00 4.18
4424 10018 3.243334 CGTTCCTAAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
4425 10019 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
4426 10020 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
4427 10021 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
4428 10022 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
4429 10023 3.052338 TCCTCCGTTCCTAAATACTCCCT 60.052 47.826 0.00 0.00 0.00 4.20
4430 10024 3.303049 TCCTCCGTTCCTAAATACTCCC 58.697 50.000 0.00 0.00 0.00 4.30
4431 10025 4.405036 ACTTCCTCCGTTCCTAAATACTCC 59.595 45.833 0.00 0.00 0.00 3.85
4432 10026 5.595257 ACTTCCTCCGTTCCTAAATACTC 57.405 43.478 0.00 0.00 0.00 2.59
4433 10027 8.953223 ATATACTTCCTCCGTTCCTAAATACT 57.047 34.615 0.00 0.00 0.00 2.12
4436 10030 8.804204 CACTATATACTTCCTCCGTTCCTAAAT 58.196 37.037 0.00 0.00 0.00 1.40
4437 10031 7.255730 GCACTATATACTTCCTCCGTTCCTAAA 60.256 40.741 0.00 0.00 0.00 1.85
4438 10032 6.208204 GCACTATATACTTCCTCCGTTCCTAA 59.792 42.308 0.00 0.00 0.00 2.69
4439 10033 5.709164 GCACTATATACTTCCTCCGTTCCTA 59.291 44.000 0.00 0.00 0.00 2.94
4440 10034 4.523558 GCACTATATACTTCCTCCGTTCCT 59.476 45.833 0.00 0.00 0.00 3.36
4441 10035 4.321824 GGCACTATATACTTCCTCCGTTCC 60.322 50.000 0.00 0.00 0.00 3.62
4442 10036 4.280174 TGGCACTATATACTTCCTCCGTTC 59.720 45.833 0.00 0.00 0.00 3.95
4443 10037 4.220724 TGGCACTATATACTTCCTCCGTT 58.779 43.478 0.00 0.00 0.00 4.44
4444 10038 3.840991 TGGCACTATATACTTCCTCCGT 58.159 45.455 0.00 0.00 0.00 4.69
4445 10039 4.866508 TTGGCACTATATACTTCCTCCG 57.133 45.455 0.00 0.00 0.00 4.63
4446 10040 6.176014 ACTTTGGCACTATATACTTCCTCC 57.824 41.667 0.00 0.00 0.00 4.30
4447 10041 7.953752 ACTACTTTGGCACTATATACTTCCTC 58.046 38.462 0.00 0.00 0.00 3.71
4448 10042 7.916077 ACTACTTTGGCACTATATACTTCCT 57.084 36.000 0.00 0.00 0.00 3.36
4449 10043 9.473640 GTTACTACTTTGGCACTATATACTTCC 57.526 37.037 0.00 0.00 0.00 3.46
4450 10044 9.473640 GGTTACTACTTTGGCACTATATACTTC 57.526 37.037 0.00 0.00 0.00 3.01
4451 10045 8.427276 GGGTTACTACTTTGGCACTATATACTT 58.573 37.037 0.00 0.00 0.00 2.24
4452 10046 7.566138 TGGGTTACTACTTTGGCACTATATACT 59.434 37.037 0.00 0.00 0.00 2.12
4453 10047 7.729116 TGGGTTACTACTTTGGCACTATATAC 58.271 38.462 0.00 0.00 0.00 1.47
4454 10048 7.917730 TGGGTTACTACTTTGGCACTATATA 57.082 36.000 0.00 0.00 0.00 0.86
4455 10049 6.818281 TGGGTTACTACTTTGGCACTATAT 57.182 37.500 0.00 0.00 0.00 0.86
4456 10050 6.818281 ATGGGTTACTACTTTGGCACTATA 57.182 37.500 0.00 0.00 0.00 1.31
4457 10051 5.710409 ATGGGTTACTACTTTGGCACTAT 57.290 39.130 0.00 0.00 0.00 2.12
4458 10052 5.221966 ACAATGGGTTACTACTTTGGCACTA 60.222 40.000 0.00 0.00 0.00 2.74
4459 10053 4.079253 CAATGGGTTACTACTTTGGCACT 58.921 43.478 0.00 0.00 0.00 4.40
4460 10054 3.824443 ACAATGGGTTACTACTTTGGCAC 59.176 43.478 0.00 0.00 0.00 5.01
4461 10055 3.823873 CACAATGGGTTACTACTTTGGCA 59.176 43.478 9.45 0.00 0.00 4.92
4462 10056 4.076394 TCACAATGGGTTACTACTTTGGC 58.924 43.478 9.45 0.00 0.00 4.52
4463 10057 5.556915 TCTCACAATGGGTTACTACTTTGG 58.443 41.667 9.45 0.00 0.00 3.28
4464 10058 7.607991 AGAATCTCACAATGGGTTACTACTTTG 59.392 37.037 0.00 0.00 0.00 2.77
4465 10059 7.690256 AGAATCTCACAATGGGTTACTACTTT 58.310 34.615 0.00 0.00 0.00 2.66
4466 10060 7.259088 AGAATCTCACAATGGGTTACTACTT 57.741 36.000 0.00 0.00 0.00 2.24
4467 10061 6.127026 GGAGAATCTCACAATGGGTTACTACT 60.127 42.308 12.79 0.00 33.73 2.57
4468 10062 6.049790 GGAGAATCTCACAATGGGTTACTAC 58.950 44.000 12.79 0.00 33.73 2.73
4469 10063 5.163447 CGGAGAATCTCACAATGGGTTACTA 60.163 44.000 12.79 0.00 33.73 1.82
4470 10064 4.383118 CGGAGAATCTCACAATGGGTTACT 60.383 45.833 12.79 0.00 33.73 2.24
4471 10065 3.871594 CGGAGAATCTCACAATGGGTTAC 59.128 47.826 12.79 0.00 33.73 2.50
4472 10066 3.517901 ACGGAGAATCTCACAATGGGTTA 59.482 43.478 12.79 0.00 33.73 2.85
4473 10067 2.305927 ACGGAGAATCTCACAATGGGTT 59.694 45.455 12.79 0.00 33.73 4.11
4474 10068 1.909302 ACGGAGAATCTCACAATGGGT 59.091 47.619 12.79 0.00 33.73 4.51
4475 10069 2.698855 ACGGAGAATCTCACAATGGG 57.301 50.000 12.79 0.00 33.73 4.00
4476 10070 3.620374 CAGAACGGAGAATCTCACAATGG 59.380 47.826 12.79 0.00 33.73 3.16
4477 10071 3.063180 GCAGAACGGAGAATCTCACAATG 59.937 47.826 12.79 5.19 33.73 2.82
4478 10072 3.265791 GCAGAACGGAGAATCTCACAAT 58.734 45.455 12.79 0.00 33.73 2.71
4479 10073 2.612972 GGCAGAACGGAGAATCTCACAA 60.613 50.000 12.79 0.00 33.73 3.33
4480 10074 1.066858 GGCAGAACGGAGAATCTCACA 60.067 52.381 12.79 0.00 33.73 3.58
4481 10075 1.066858 TGGCAGAACGGAGAATCTCAC 60.067 52.381 12.79 0.89 33.73 3.51
4482 10076 1.266178 TGGCAGAACGGAGAATCTCA 58.734 50.000 12.79 0.00 33.73 3.27
4483 10077 2.611225 ATGGCAGAACGGAGAATCTC 57.389 50.000 0.71 0.71 33.73 2.75
4484 10078 4.101585 TCATTATGGCAGAACGGAGAATCT 59.898 41.667 0.00 0.00 33.73 2.40
4485 10079 4.380531 TCATTATGGCAGAACGGAGAATC 58.619 43.478 0.00 0.00 0.00 2.52
4486 10080 4.422073 TCATTATGGCAGAACGGAGAAT 57.578 40.909 0.00 0.00 0.00 2.40
4487 10081 3.904800 TCATTATGGCAGAACGGAGAA 57.095 42.857 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.