Multiple sequence alignment - TraesCS5B01G040700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G040700 chr5B 100.000 5186 0 0 1 5186 45203094 45208279 0.000000e+00 9577.0
1 TraesCS5B01G040700 chr5B 97.744 665 14 1 4522 5186 662617941 662617278 0.000000e+00 1144.0
2 TraesCS5B01G040700 chr5B 82.988 482 42 21 3745 4189 45237362 45237840 2.910000e-107 399.0
3 TraesCS5B01G040700 chr5B 90.204 245 16 4 116 356 45039796 45040036 3.900000e-81 313.0
4 TraesCS5B01G040700 chr5B 87.356 87 7 1 1074 1160 45234753 45234835 4.270000e-16 97.1
5 TraesCS5B01G040700 chr5B 81.967 122 8 8 633 746 45051174 45051289 1.990000e-14 91.6
6 TraesCS5B01G040700 chr5D 90.614 1694 90 29 2642 4283 45173189 45174865 0.000000e+00 2183.0
7 TraesCS5B01G040700 chr5D 87.147 1276 69 38 592 1811 45170924 45172160 0.000000e+00 1360.0
8 TraesCS5B01G040700 chr5D 93.344 631 28 6 1969 2598 45172574 45173191 0.000000e+00 920.0
9 TraesCS5B01G040700 chr5D 92.606 284 17 2 1 281 45151430 45151712 6.250000e-109 405.0
10 TraesCS5B01G040700 chr5D 82.639 432 30 22 72 472 45145014 45145431 1.790000e-89 340.0
11 TraesCS5B01G040700 chr5D 90.763 249 19 2 1248 1496 45206325 45206569 3.870000e-86 329.0
12 TraesCS5B01G040700 chr5D 91.597 238 18 2 4283 4518 45174906 45175143 1.390000e-85 327.0
13 TraesCS5B01G040700 chr5D 79.318 440 58 17 3771 4191 45208986 45209411 1.420000e-70 278.0
14 TraesCS5B01G040700 chr5D 86.885 244 25 6 2186 2426 45207428 45207667 3.080000e-67 267.0
15 TraesCS5B01G040700 chr5D 80.571 350 36 10 3002 3336 45208096 45208428 1.870000e-59 241.0
16 TraesCS5B01G040700 chr5D 90.217 184 8 4 405 587 45170551 45170725 1.120000e-56 231.0
17 TraesCS5B01G040700 chr5D 89.062 128 8 1 279 406 45170050 45170171 2.500000e-33 154.0
18 TraesCS5B01G040700 chr5D 82.051 156 14 11 3360 3508 45208535 45208683 2.540000e-23 121.0
19 TraesCS5B01G040700 chr5D 78.571 196 15 13 992 1160 45205976 45206171 2.550000e-18 104.0
20 TraesCS5B01G040700 chr5D 95.556 45 2 0 1927 1971 45172155 45172199 7.200000e-09 73.1
21 TraesCS5B01G040700 chr5D 90.000 50 3 2 2599 2646 560413130 560413081 4.340000e-06 63.9
22 TraesCS5B01G040700 chr2B 98.045 665 13 0 4522 5186 58874797 58875461 0.000000e+00 1157.0
23 TraesCS5B01G040700 chr2B 97.741 664 14 1 4524 5186 106133433 106134096 0.000000e+00 1142.0
24 TraesCS5B01G040700 chr2B 95.489 133 6 0 1798 1930 58667102 58667234 4.070000e-51 213.0
25 TraesCS5B01G040700 chr1B 97.898 666 14 0 4521 5186 24653996 24654661 0.000000e+00 1153.0
26 TraesCS5B01G040700 chr1B 97.594 665 16 0 4522 5186 37985563 37986227 0.000000e+00 1140.0
27 TraesCS5B01G040700 chr1B 93.333 45 3 0 2599 2643 503833136 503833092 3.350000e-07 67.6
28 TraesCS5B01G040700 chr1B 89.362 47 3 1 2599 2643 543741471 543741425 2.020000e-04 58.4
29 TraesCS5B01G040700 chr4A 97.612 670 13 3 4520 5186 659405020 659405689 0.000000e+00 1146.0
30 TraesCS5B01G040700 chr4A 97.470 672 11 2 4521 5186 692066917 692066246 0.000000e+00 1142.0
31 TraesCS5B01G040700 chr4A 95.349 129 5 1 1802 1930 552698743 552698870 2.450000e-48 204.0
32 TraesCS5B01G040700 chrUn 97.738 663 15 0 4524 5186 267386485 267387147 0.000000e+00 1142.0
33 TraesCS5B01G040700 chr3B 97.463 670 13 1 4521 5186 728295752 728296421 0.000000e+00 1140.0
34 TraesCS5B01G040700 chr3B 90.566 53 5 0 1551 1603 752373343 752373395 2.590000e-08 71.3
35 TraesCS5B01G040700 chr3B 89.583 48 4 1 2793 2840 745591017 745591063 5.610000e-05 60.2
36 TraesCS5B01G040700 chr5A 90.498 663 51 9 1940 2598 35823323 35823977 0.000000e+00 865.0
37 TraesCS5B01G040700 chr5A 89.545 660 42 10 3641 4275 35825203 35825860 0.000000e+00 811.0
38 TraesCS5B01G040700 chr5A 84.430 790 68 28 1074 1811 35822533 35823319 0.000000e+00 726.0
39 TraesCS5B01G040700 chr5A 88.776 588 38 14 6 580 35820610 35821182 0.000000e+00 695.0
40 TraesCS5B01G040700 chr5A 86.026 458 44 11 2642 3083 35823975 35824428 1.690000e-129 473.0
41 TraesCS5B01G040700 chr5A 87.197 289 17 11 3360 3641 35824844 35825119 1.400000e-80 311.0
42 TraesCS5B01G040700 chr5A 84.661 339 19 16 757 1070 35821925 35822255 1.810000e-79 307.0
43 TraesCS5B01G040700 chr5A 89.268 205 18 4 2174 2374 36013560 36013764 2.400000e-63 254.0
44 TraesCS5B01G040700 chr5A 84.420 276 22 8 72 330 35809111 35809382 8.620000e-63 252.0
45 TraesCS5B01G040700 chr5A 94.512 164 8 1 3771 3933 36015036 36015199 8.620000e-63 252.0
46 TraesCS5B01G040700 chr5A 96.000 125 5 0 1805 1929 86548590 86548466 2.450000e-48 204.0
47 TraesCS5B01G040700 chr5A 96.000 125 5 0 1806 1930 307440934 307440810 2.450000e-48 204.0
48 TraesCS5B01G040700 chr5A 84.409 186 18 3 584 769 35821677 35821851 6.900000e-39 172.0
49 TraesCS5B01G040700 chr5A 84.615 130 12 7 3362 3491 36014582 36014703 7.050000e-24 122.0
50 TraesCS5B01G040700 chr5A 84.615 117 15 3 1040 1153 35820222 35820338 4.240000e-21 113.0
51 TraesCS5B01G040700 chr5A 83.529 85 10 4 4184 4267 36015491 36015572 5.570000e-10 76.8
52 TraesCS5B01G040700 chr3A 96.000 125 5 0 1806 1930 148651945 148651821 2.450000e-48 204.0
53 TraesCS5B01G040700 chr3A 97.368 38 1 0 2607 2644 617300597 617300560 1.210000e-06 65.8
54 TraesCS5B01G040700 chr1D 96.667 120 4 0 1808 1927 391969809 391969928 3.170000e-47 200.0
55 TraesCS5B01G040700 chr2A 94.574 129 6 1 1800 1928 733544674 733544801 1.140000e-46 198.0
56 TraesCS5B01G040700 chr2A 93.893 131 7 1 1797 1927 653424101 653424230 4.100000e-46 196.0
57 TraesCS5B01G040700 chr2A 91.304 46 3 1 2600 2644 146953479 146953524 1.560000e-05 62.1
58 TraesCS5B01G040700 chr6A 93.846 130 8 0 1798 1927 15623179 15623308 4.100000e-46 196.0
59 TraesCS5B01G040700 chr7A 84.946 93 7 1 1551 1643 581374334 581374249 2.570000e-13 87.9
60 TraesCS5B01G040700 chr7A 91.304 46 3 1 2599 2643 108210471 108210426 1.560000e-05 62.1
61 TraesCS5B01G040700 chr2D 96.154 52 2 0 1551 1602 106629824 106629773 9.250000e-13 86.1
62 TraesCS5B01G040700 chr4B 90.625 64 5 1 1541 1603 664058493 664058556 3.330000e-12 84.2
63 TraesCS5B01G040700 chr7D 94.340 53 3 0 1551 1603 261818673 261818621 1.200000e-11 82.4
64 TraesCS5B01G040700 chr7D 94.118 51 3 0 1551 1601 594064999 594065049 1.550000e-10 78.7
65 TraesCS5B01G040700 chr7D 88.462 52 5 1 2596 2647 268831908 268831958 1.560000e-05 62.1
66 TraesCS5B01G040700 chr3D 92.453 53 4 0 1551 1603 305448576 305448628 5.570000e-10 76.8
67 TraesCS5B01G040700 chr3D 89.474 57 5 1 1548 1603 448432963 448432907 2.590000e-08 71.3
68 TraesCS5B01G040700 chr3D 95.000 40 2 0 2606 2645 565403308 565403347 4.340000e-06 63.9
69 TraesCS5B01G040700 chr3D 91.111 45 3 1 2600 2643 582047550 582047506 5.610000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G040700 chr5B 45203094 45208279 5185 False 9577.000000 9577 100.000000 1 5186 1 chr5B.!!$F3 5185
1 TraesCS5B01G040700 chr5B 662617278 662617941 663 True 1144.000000 1144 97.744000 4522 5186 1 chr5B.!!$R1 664
2 TraesCS5B01G040700 chr5B 45234753 45237840 3087 False 248.050000 399 85.172000 1074 4189 2 chr5B.!!$F4 3115
3 TraesCS5B01G040700 chr5D 45170050 45175143 5093 False 749.728571 2183 91.076714 279 4518 7 chr5D.!!$F3 4239
4 TraesCS5B01G040700 chr5D 45205976 45209411 3435 False 223.333333 329 83.026500 992 4191 6 chr5D.!!$F4 3199
5 TraesCS5B01G040700 chr2B 58874797 58875461 664 False 1157.000000 1157 98.045000 4522 5186 1 chr2B.!!$F2 664
6 TraesCS5B01G040700 chr2B 106133433 106134096 663 False 1142.000000 1142 97.741000 4524 5186 1 chr2B.!!$F3 662
7 TraesCS5B01G040700 chr1B 24653996 24654661 665 False 1153.000000 1153 97.898000 4521 5186 1 chr1B.!!$F1 665
8 TraesCS5B01G040700 chr1B 37985563 37986227 664 False 1140.000000 1140 97.594000 4522 5186 1 chr1B.!!$F2 664
9 TraesCS5B01G040700 chr4A 659405020 659405689 669 False 1146.000000 1146 97.612000 4520 5186 1 chr4A.!!$F2 666
10 TraesCS5B01G040700 chr4A 692066246 692066917 671 True 1142.000000 1142 97.470000 4521 5186 1 chr4A.!!$R1 665
11 TraesCS5B01G040700 chrUn 267386485 267387147 662 False 1142.000000 1142 97.738000 4524 5186 1 chrUn.!!$F1 662
12 TraesCS5B01G040700 chr3B 728295752 728296421 669 False 1140.000000 1140 97.463000 4521 5186 1 chr3B.!!$F1 665
13 TraesCS5B01G040700 chr5A 35820222 35825860 5638 False 497.000000 865 86.684111 6 4275 9 chr5A.!!$F2 4269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 2157 0.323999 TACGTAGGGCCAGAGCTTCA 60.324 55.0 6.18 0.0 39.73 3.02 F
1850 3721 0.178816 TTGAAGGGGATTGAGGGGGA 60.179 55.0 0.00 0.0 0.00 4.81 F
3285 5998 0.033504 ACACCTTGCGTCGAGACAAT 59.966 50.0 0.00 0.0 0.00 2.71 F
3727 6742 0.596600 TTGTCACTTCCACGTCGCTC 60.597 55.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 3743 0.039618 TGAAGGGGATTTGCAGGGAC 59.960 55.000 0.0 0.0 0.00 4.46 R
3503 6328 0.104855 TAGCTTAGGTCCATGCAGCG 59.895 55.000 0.0 0.0 35.53 5.18 R
4086 7174 0.605589 AAGAGTGAGAGGCGACCTTG 59.394 55.000 0.0 0.0 31.76 3.61 R
4642 7803 1.875963 GTGAAGGCACATTGGTCCG 59.124 57.895 0.0 0.0 44.51 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 427 4.209307 AGCTAAGCTCCTTTAGTGGTTC 57.791 45.455 0.00 0.00 30.62 3.62
54 438 4.332819 CCTTTAGTGGTTCGGCTAGAAATG 59.667 45.833 0.00 0.00 41.10 2.32
60 444 3.196901 TGGTTCGGCTAGAAATGCTCTTA 59.803 43.478 0.00 0.00 41.10 2.10
64 448 3.809832 TCGGCTAGAAATGCTCTTAATGC 59.190 43.478 0.00 0.00 35.41 3.56
65 449 3.561310 CGGCTAGAAATGCTCTTAATGCA 59.439 43.478 0.00 5.88 44.95 3.96
93 477 2.191128 AATGAGCACCTCACCTTCAC 57.809 50.000 0.00 0.00 43.63 3.18
103 487 1.001406 CTCACCTTCACTGAGTCCCAC 59.999 57.143 0.00 0.00 31.99 4.61
110 494 4.135153 CTGAGTCCCACGAGGCCG 62.135 72.222 0.00 0.00 42.50 6.13
134 518 3.704512 CTGTTCTGATCTGGATCTCACG 58.295 50.000 11.23 0.00 38.60 4.35
239 623 6.366340 TCCTACAGTAAGCTGCTAGAGTATT 58.634 40.000 0.90 0.00 46.30 1.89
240 624 7.515586 TCCTACAGTAAGCTGCTAGAGTATTA 58.484 38.462 0.90 0.00 46.30 0.98
241 625 7.662258 TCCTACAGTAAGCTGCTAGAGTATTAG 59.338 40.741 0.90 2.28 46.30 1.73
244 628 4.525100 AGTAAGCTGCTAGAGTATTAGCCC 59.475 45.833 0.90 0.00 44.29 5.19
323 712 1.734465 GCTGGACCACTCTTTTGATCG 59.266 52.381 0.00 0.00 0.00 3.69
357 746 8.502161 ACGAATTTTGCTATGAAAACAAGTAC 57.498 30.769 0.00 0.00 0.00 2.73
358 747 8.349983 ACGAATTTTGCTATGAAAACAAGTACT 58.650 29.630 0.00 0.00 0.00 2.73
359 748 9.820229 CGAATTTTGCTATGAAAACAAGTACTA 57.180 29.630 0.00 0.00 0.00 1.82
399 788 7.041848 CCAAAATTGGTTTCCAGAAATTGTCTC 60.042 37.037 3.95 0.00 43.43 3.36
400 789 5.728637 ATTGGTTTCCAGAAATTGTCTCC 57.271 39.130 0.00 0.00 32.70 3.71
421 1191 3.131046 CCTGGTATTGGATTTTGGACAGC 59.869 47.826 0.00 0.00 0.00 4.40
422 1192 2.752354 TGGTATTGGATTTTGGACAGCG 59.248 45.455 0.00 0.00 0.00 5.18
423 1193 3.013921 GGTATTGGATTTTGGACAGCGA 58.986 45.455 0.00 0.00 0.00 4.93
424 1194 3.632145 GGTATTGGATTTTGGACAGCGAT 59.368 43.478 0.00 0.00 0.00 4.58
473 1250 4.766375 ACCACCAGTAAATAGTGATTCCG 58.234 43.478 0.00 0.00 33.21 4.30
481 1258 8.411683 CCAGTAAATAGTGATTCCGTTAGTAGT 58.588 37.037 0.00 0.00 0.00 2.73
524 1301 1.839994 CCAGACCTTGGCCAGATTAGA 59.160 52.381 5.11 0.00 40.87 2.10
525 1302 2.441001 CCAGACCTTGGCCAGATTAGAT 59.559 50.000 5.11 0.00 40.87 1.98
526 1303 3.117738 CCAGACCTTGGCCAGATTAGATT 60.118 47.826 5.11 0.00 40.87 2.40
527 1304 4.103153 CCAGACCTTGGCCAGATTAGATTA 59.897 45.833 5.11 0.00 40.87 1.75
528 1305 5.303971 CAGACCTTGGCCAGATTAGATTAG 58.696 45.833 5.11 0.00 0.00 1.73
531 1308 4.070716 CCTTGGCCAGATTAGATTAGCTG 58.929 47.826 5.11 0.00 0.00 4.24
541 1318 7.384660 CCAGATTAGATTAGCTGATTCTGTGTC 59.615 40.741 13.74 6.40 31.58 3.67
560 1338 3.267483 GTCGTTGGCTTAAGCAGGAATA 58.733 45.455 27.83 6.66 44.36 1.75
590 1859 2.253452 GCAGCAAGCACAAGGACG 59.747 61.111 0.00 0.00 44.79 4.79
613 1887 2.594303 CAAGCACCGTCCAGGCAA 60.594 61.111 0.00 0.00 46.52 4.52
615 1889 1.898574 AAGCACCGTCCAGGCAAAG 60.899 57.895 0.00 0.00 46.52 2.77
616 1890 3.365265 GCACCGTCCAGGCAAAGG 61.365 66.667 0.00 0.00 46.52 3.11
617 1891 3.365265 CACCGTCCAGGCAAAGGC 61.365 66.667 0.00 0.00 46.52 4.35
627 1901 1.815003 CAGGCAAAGGCGAAGAAATCT 59.185 47.619 0.00 0.00 42.47 2.40
663 1937 2.922335 GCAAAGCTAGAAAACAAGGGCG 60.922 50.000 0.00 0.00 0.00 6.13
762 2046 3.073735 ACGAGGCTGCAGGAGGAG 61.074 66.667 17.12 0.00 36.10 3.69
771 2055 0.395311 TGCAGGAGGAGTACGTAGGG 60.395 60.000 0.00 0.00 0.00 3.53
782 2157 0.323999 TACGTAGGGCCAGAGCTTCA 60.324 55.000 6.18 0.00 39.73 3.02
849 2224 2.330393 GTGCTGTGCTGTGCTGTG 59.670 61.111 0.00 0.00 0.00 3.66
850 2225 3.588906 TGCTGTGCTGTGCTGTGC 61.589 61.111 0.00 0.00 0.00 4.57
851 2226 3.285215 GCTGTGCTGTGCTGTGCT 61.285 61.111 0.00 0.00 0.00 4.40
852 2227 2.637589 CTGTGCTGTGCTGTGCTG 59.362 61.111 0.00 0.00 0.00 4.41
853 2228 2.124612 TGTGCTGTGCTGTGCTGT 60.125 55.556 0.00 0.00 0.00 4.40
854 2229 0.881600 CTGTGCTGTGCTGTGCTGTA 60.882 55.000 0.00 0.00 0.00 2.74
907 2282 2.883621 GGAGGTCGTCCGTCCTTC 59.116 66.667 6.92 1.39 34.84 3.46
926 2301 4.434520 CTTCCGTCCTCCTCATTAAGTTC 58.565 47.826 0.00 0.00 0.00 3.01
927 2302 3.709587 TCCGTCCTCCTCATTAAGTTCT 58.290 45.455 0.00 0.00 0.00 3.01
928 2303 4.094476 TCCGTCCTCCTCATTAAGTTCTT 58.906 43.478 0.00 0.00 0.00 2.52
929 2304 4.159879 TCCGTCCTCCTCATTAAGTTCTTC 59.840 45.833 0.00 0.00 0.00 2.87
930 2305 4.434520 CGTCCTCCTCATTAAGTTCTTCC 58.565 47.826 0.00 0.00 0.00 3.46
933 2315 4.717280 TCCTCCTCATTAAGTTCTTCCTCC 59.283 45.833 0.00 0.00 0.00 4.30
951 2336 1.081092 CTCCTCCTCCCTTCCACCA 59.919 63.158 0.00 0.00 0.00 4.17
1008 2398 2.267006 CTGTGCGCCATGGACTCT 59.733 61.111 18.40 0.00 40.08 3.24
1057 2491 5.246203 GGTATGCTCTCTCTCTCTCTCTCTA 59.754 48.000 0.00 0.00 0.00 2.43
1070 2504 6.013379 TCTCTCTCTCTATCTCTCTCTCTCC 58.987 48.000 0.00 0.00 0.00 3.71
1071 2505 5.087323 TCTCTCTCTATCTCTCTCTCTCCC 58.913 50.000 0.00 0.00 0.00 4.30
1072 2506 4.826616 TCTCTCTATCTCTCTCTCTCCCA 58.173 47.826 0.00 0.00 0.00 4.37
1082 2791 3.055530 TCTCTCTCTCCCATCTTTGTTGC 60.056 47.826 0.00 0.00 0.00 4.17
1179 2888 3.008485 AGAAGGGAATCAGACCAGTTCAC 59.992 47.826 0.00 0.00 0.00 3.18
1195 2904 2.661504 TCACGCATGCATTTATACGC 57.338 45.000 19.57 0.00 0.00 4.42
1238 3010 1.225855 CTTGTTGCTTACACGGCTGA 58.774 50.000 0.00 0.00 36.21 4.26
1279 3074 2.069465 CTGGAGGATCGTGAGGAGCG 62.069 65.000 0.00 0.00 34.37 5.03
1287 3082 3.063084 GTGAGGAGCGGGTCGACT 61.063 66.667 16.46 0.00 0.00 4.18
1496 3325 0.802494 GGCCACACGGTCTACAAATG 59.198 55.000 0.00 0.00 32.39 2.32
1573 3408 3.126171 TCCGAATTAATTGACGCAACCTG 59.874 43.478 5.17 0.00 0.00 4.00
1595 3430 9.474313 ACCTGTATACAATGTCCATTTTACATT 57.526 29.630 7.06 0.00 45.97 2.71
1616 3470 4.296621 TGTATAGACTATAGAGGCGGCA 57.703 45.455 13.08 0.00 34.92 5.69
1628 3482 2.158623 AGAGGCGGCATCAATTAATCCA 60.159 45.455 17.58 0.00 0.00 3.41
1633 3487 3.425359 GCGGCATCAATTAATCCAGATCG 60.425 47.826 0.00 0.00 0.00 3.69
1722 3578 5.183140 CCCGAAACTGTCTGGTTAATTGAAT 59.817 40.000 0.00 0.00 0.00 2.57
1748 3607 5.057843 TCTCGTTAAGGGAGCTATAGGAA 57.942 43.478 1.04 0.00 0.00 3.36
1800 3671 3.321111 TCTTGACCGAGTTAGTTGCTTCT 59.679 43.478 0.00 0.00 0.00 2.85
1812 3683 4.039603 AGTTGCTTCTTCATTAAGGGCT 57.960 40.909 6.92 0.00 34.91 5.19
1813 3684 4.411013 AGTTGCTTCTTCATTAAGGGCTT 58.589 39.130 6.92 0.00 34.91 4.35
1814 3685 4.219288 AGTTGCTTCTTCATTAAGGGCTTG 59.781 41.667 6.92 0.00 34.91 4.01
1815 3686 3.766545 TGCTTCTTCATTAAGGGCTTGT 58.233 40.909 6.92 0.00 34.91 3.16
1816 3687 4.151883 TGCTTCTTCATTAAGGGCTTGTT 58.848 39.130 6.92 0.00 34.91 2.83
1817 3688 4.218417 TGCTTCTTCATTAAGGGCTTGTTC 59.782 41.667 6.92 0.00 34.91 3.18
1818 3689 4.672801 GCTTCTTCATTAAGGGCTTGTTCG 60.673 45.833 0.00 0.00 33.22 3.95
1820 3691 2.871096 TCATTAAGGGCTTGTTCGGT 57.129 45.000 0.00 0.00 0.00 4.69
1821 3692 3.149005 TCATTAAGGGCTTGTTCGGTT 57.851 42.857 0.00 0.00 0.00 4.44
1822 3693 2.817258 TCATTAAGGGCTTGTTCGGTTG 59.183 45.455 0.00 0.00 0.00 3.77
1823 3694 2.642154 TTAAGGGCTTGTTCGGTTGA 57.358 45.000 0.00 0.00 0.00 3.18
1824 3695 2.178912 TAAGGGCTTGTTCGGTTGAG 57.821 50.000 0.00 0.00 0.00 3.02
1825 3696 0.537371 AAGGGCTTGTTCGGTTGAGG 60.537 55.000 0.00 0.00 0.00 3.86
1826 3697 1.228154 GGGCTTGTTCGGTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
1827 3698 1.515521 GGGCTTGTTCGGTTGAGGTG 61.516 60.000 0.00 0.00 0.00 4.00
1828 3699 1.515521 GGCTTGTTCGGTTGAGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
1830 3701 1.882352 GCTTGTTCGGTTGAGGTGGAT 60.882 52.381 0.00 0.00 0.00 3.41
1832 3703 2.649531 TGTTCGGTTGAGGTGGATTT 57.350 45.000 0.00 0.00 0.00 2.17
1833 3704 2.226330 TGTTCGGTTGAGGTGGATTTG 58.774 47.619 0.00 0.00 0.00 2.32
1835 3706 2.882137 GTTCGGTTGAGGTGGATTTGAA 59.118 45.455 0.00 0.00 0.00 2.69
1836 3707 2.778299 TCGGTTGAGGTGGATTTGAAG 58.222 47.619 0.00 0.00 0.00 3.02
1837 3708 1.812571 CGGTTGAGGTGGATTTGAAGG 59.187 52.381 0.00 0.00 0.00 3.46
1838 3709 2.171003 GGTTGAGGTGGATTTGAAGGG 58.829 52.381 0.00 0.00 0.00 3.95
1839 3710 2.171003 GTTGAGGTGGATTTGAAGGGG 58.829 52.381 0.00 0.00 0.00 4.79
1840 3711 1.753903 TGAGGTGGATTTGAAGGGGA 58.246 50.000 0.00 0.00 0.00 4.81
1841 3712 2.287584 TGAGGTGGATTTGAAGGGGAT 58.712 47.619 0.00 0.00 0.00 3.85
1843 3714 3.026694 GAGGTGGATTTGAAGGGGATTG 58.973 50.000 0.00 0.00 0.00 2.67
1844 3715 2.654385 AGGTGGATTTGAAGGGGATTGA 59.346 45.455 0.00 0.00 0.00 2.57
1845 3716 3.026694 GGTGGATTTGAAGGGGATTGAG 58.973 50.000 0.00 0.00 0.00 3.02
1846 3717 3.026694 GTGGATTTGAAGGGGATTGAGG 58.973 50.000 0.00 0.00 0.00 3.86
1847 3718 2.024080 TGGATTTGAAGGGGATTGAGGG 60.024 50.000 0.00 0.00 0.00 4.30
1849 3720 0.709992 TTTGAAGGGGATTGAGGGGG 59.290 55.000 0.00 0.00 0.00 5.40
1850 3721 0.178816 TTGAAGGGGATTGAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
1852 3723 1.235756 GAAGGGGATTGAGGGGGAAT 58.764 55.000 0.00 0.00 0.00 3.01
1853 3724 1.575788 GAAGGGGATTGAGGGGGAATT 59.424 52.381 0.00 0.00 0.00 2.17
1854 3725 2.624846 AGGGGATTGAGGGGGAATTA 57.375 50.000 0.00 0.00 0.00 1.40
1856 3727 3.426933 AGGGGATTGAGGGGGAATTAAT 58.573 45.455 0.00 0.00 0.00 1.40
1857 3728 3.402708 AGGGGATTGAGGGGGAATTAATC 59.597 47.826 0.00 0.00 0.00 1.75
1868 3739 1.688735 GGAATTAATCCCCTGCAAGCC 59.311 52.381 0.00 0.00 43.00 4.35
1869 3740 2.387757 GAATTAATCCCCTGCAAGCCA 58.612 47.619 0.00 0.00 0.00 4.75
1870 3741 2.548464 ATTAATCCCCTGCAAGCCAA 57.452 45.000 0.00 0.00 0.00 4.52
1871 3742 2.317371 TTAATCCCCTGCAAGCCAAA 57.683 45.000 0.00 0.00 0.00 3.28
1872 3743 1.851304 TAATCCCCTGCAAGCCAAAG 58.149 50.000 0.00 0.00 0.00 2.77
1873 3744 0.178924 AATCCCCTGCAAGCCAAAGT 60.179 50.000 0.00 0.00 0.00 2.66
1874 3745 0.613012 ATCCCCTGCAAGCCAAAGTC 60.613 55.000 0.00 0.00 0.00 3.01
1875 3746 2.278330 CCCCTGCAAGCCAAAGTCC 61.278 63.158 0.00 0.00 0.00 3.85
1876 3747 2.278330 CCCTGCAAGCCAAAGTCCC 61.278 63.158 0.00 0.00 0.00 4.46
1877 3748 1.228675 CCTGCAAGCCAAAGTCCCT 60.229 57.895 0.00 0.00 0.00 4.20
1878 3749 1.530013 CCTGCAAGCCAAAGTCCCTG 61.530 60.000 0.00 0.00 0.00 4.45
1879 3750 2.151049 CTGCAAGCCAAAGTCCCTGC 62.151 60.000 0.00 0.00 0.00 4.85
1880 3751 2.202395 GCAAGCCAAAGTCCCTGCA 61.202 57.895 0.00 0.00 0.00 4.41
1881 3752 1.747325 GCAAGCCAAAGTCCCTGCAA 61.747 55.000 0.00 0.00 0.00 4.08
1883 3754 1.345415 CAAGCCAAAGTCCCTGCAAAT 59.655 47.619 0.00 0.00 0.00 2.32
1884 3755 1.260544 AGCCAAAGTCCCTGCAAATC 58.739 50.000 0.00 0.00 0.00 2.17
1885 3756 0.247460 GCCAAAGTCCCTGCAAATCC 59.753 55.000 0.00 0.00 0.00 3.01
1886 3757 0.897621 CCAAAGTCCCTGCAAATCCC 59.102 55.000 0.00 0.00 0.00 3.85
1887 3758 0.897621 CAAAGTCCCTGCAAATCCCC 59.102 55.000 0.00 0.00 0.00 4.81
1888 3759 0.786435 AAAGTCCCTGCAAATCCCCT 59.214 50.000 0.00 0.00 0.00 4.79
1889 3760 0.786435 AAGTCCCTGCAAATCCCCTT 59.214 50.000 0.00 0.00 0.00 3.95
1893 3764 1.362237 TCCCTGCAAATCCCCTTCAAT 59.638 47.619 0.00 0.00 0.00 2.57
1894 3765 1.758862 CCCTGCAAATCCCCTTCAATC 59.241 52.381 0.00 0.00 0.00 2.67
1896 3767 2.459644 CTGCAAATCCCCTTCAATCCA 58.540 47.619 0.00 0.00 0.00 3.41
1897 3768 2.167075 CTGCAAATCCCCTTCAATCCAC 59.833 50.000 0.00 0.00 0.00 4.02
1898 3769 2.225343 TGCAAATCCCCTTCAATCCACT 60.225 45.455 0.00 0.00 0.00 4.00
1899 3770 2.833943 GCAAATCCCCTTCAATCCACTT 59.166 45.455 0.00 0.00 0.00 3.16
1900 3771 3.368739 GCAAATCCCCTTCAATCCACTTG 60.369 47.826 0.00 0.00 36.09 3.16
1901 3772 2.834638 ATCCCCTTCAATCCACTTGG 57.165 50.000 0.00 0.00 35.43 3.61
1902 3773 0.704076 TCCCCTTCAATCCACTTGGG 59.296 55.000 0.00 0.00 35.43 4.12
1903 3774 0.324645 CCCCTTCAATCCACTTGGGG 60.325 60.000 0.00 0.00 46.89 4.96
1904 3775 0.409484 CCCTTCAATCCACTTGGGGT 59.591 55.000 0.00 0.00 33.71 4.95
1905 3776 1.203174 CCCTTCAATCCACTTGGGGTT 60.203 52.381 0.00 0.00 42.20 4.11
1911 3782 1.092549 ATCCACTTGGGGTTGGGATT 58.907 50.000 0.00 0.00 34.81 3.01
1912 3783 1.761711 TCCACTTGGGGTTGGGATTA 58.238 50.000 0.00 0.00 37.22 1.75
1924 3795 4.928601 GGTTGGGATTAACCGAATAAAGC 58.071 43.478 0.00 0.00 40.58 3.51
1926 3797 4.513406 TGGGATTAACCGAATAAAGCCT 57.487 40.909 0.00 0.00 40.11 4.58
1927 3798 5.633655 TGGGATTAACCGAATAAAGCCTA 57.366 39.130 0.00 0.00 40.11 3.93
1929 3800 6.059484 TGGGATTAACCGAATAAAGCCTAAG 58.941 40.000 0.00 0.00 40.11 2.18
1930 3801 6.126710 TGGGATTAACCGAATAAAGCCTAAGA 60.127 38.462 0.00 0.00 40.11 2.10
1931 3802 6.769341 GGGATTAACCGAATAAAGCCTAAGAA 59.231 38.462 0.00 0.00 40.11 2.52
2001 4449 0.172803 AGTGGCTACCTTTAGTCGCG 59.827 55.000 0.00 0.00 43.93 5.87
2011 4459 4.608951 ACCTTTAGTCGCGACATATCTTC 58.391 43.478 37.85 11.54 0.00 2.87
2225 4806 2.192861 TTGGTGGCAGCTTTGGACG 61.193 57.895 18.53 0.00 0.00 4.79
2271 4852 1.270732 GGCCACAACATTTGCCATTGA 60.271 47.619 0.00 0.00 43.46 2.57
2439 5025 6.668645 AGGTTTCTATATGTATTGGGTTGCA 58.331 36.000 0.00 0.00 0.00 4.08
2441 5027 7.285401 AGGTTTCTATATGTATTGGGTTGCAAG 59.715 37.037 0.00 0.00 0.00 4.01
2443 5029 6.508030 TCTATATGTATTGGGTTGCAAGGA 57.492 37.500 0.00 0.00 0.00 3.36
2444 5030 7.090319 TCTATATGTATTGGGTTGCAAGGAT 57.910 36.000 0.00 0.00 0.00 3.24
2607 5204 9.601217 AAGTAGTTAAATCCTAGTAGTGCATTG 57.399 33.333 0.00 0.00 0.00 2.82
2608 5205 8.759782 AGTAGTTAAATCCTAGTAGTGCATTGT 58.240 33.333 0.00 0.00 0.00 2.71
2609 5206 9.032420 GTAGTTAAATCCTAGTAGTGCATTGTC 57.968 37.037 0.00 0.00 0.00 3.18
2610 5207 7.620880 AGTTAAATCCTAGTAGTGCATTGTCA 58.379 34.615 0.00 0.00 0.00 3.58
2611 5208 8.100791 AGTTAAATCCTAGTAGTGCATTGTCAA 58.899 33.333 0.00 0.00 0.00 3.18
2612 5209 8.726988 GTTAAATCCTAGTAGTGCATTGTCAAA 58.273 33.333 0.00 0.00 0.00 2.69
2613 5210 7.759489 AAATCCTAGTAGTGCATTGTCAAAA 57.241 32.000 0.00 0.00 0.00 2.44
2614 5211 7.759489 AATCCTAGTAGTGCATTGTCAAAAA 57.241 32.000 0.00 0.00 0.00 1.94
2636 5233 8.480643 AAAAAGTCTTACATTATGAGACGGAG 57.519 34.615 0.00 0.00 46.23 4.63
2637 5234 5.776173 AGTCTTACATTATGAGACGGAGG 57.224 43.478 0.00 0.00 46.23 4.30
2638 5235 5.446860 AGTCTTACATTATGAGACGGAGGA 58.553 41.667 0.00 0.00 46.23 3.71
2639 5236 5.892119 AGTCTTACATTATGAGACGGAGGAA 59.108 40.000 0.00 0.00 46.23 3.36
2640 5237 6.039941 AGTCTTACATTATGAGACGGAGGAAG 59.960 42.308 0.00 0.00 46.23 3.46
2723 5325 3.649073 AGCTGTAATTTTCCCGCAAAAC 58.351 40.909 0.00 0.00 36.78 2.43
2732 5334 3.495670 TTCCCGCAAAACAATAATCCG 57.504 42.857 0.00 0.00 0.00 4.18
2886 5491 7.316544 ACCAATATAAACATCTTTCGGACAC 57.683 36.000 0.00 0.00 0.00 3.67
2913 5518 7.047271 AGTCAAATGGTATGTTTGTTTTTGCT 58.953 30.769 0.00 0.00 37.70 3.91
2971 5578 6.183360 TGGTCAAATTTAGGCTCACATTTTGT 60.183 34.615 0.00 0.00 0.00 2.83
2972 5579 7.014711 TGGTCAAATTTAGGCTCACATTTTGTA 59.985 33.333 0.00 0.00 0.00 2.41
2973 5580 7.870445 GGTCAAATTTAGGCTCACATTTTGTAA 59.130 33.333 0.00 0.00 0.00 2.41
2975 5582 9.995003 TCAAATTTAGGCTCACATTTTGTAATT 57.005 25.926 0.00 0.00 0.00 1.40
2979 5586 7.994425 TTAGGCTCACATTTTGTAATTCTCA 57.006 32.000 0.00 0.00 0.00 3.27
2980 5587 6.259550 AGGCTCACATTTTGTAATTCTCAC 57.740 37.500 0.00 0.00 0.00 3.51
2982 5589 6.435277 AGGCTCACATTTTGTAATTCTCACAT 59.565 34.615 0.00 0.00 0.00 3.21
2983 5590 7.611467 AGGCTCACATTTTGTAATTCTCACATA 59.389 33.333 0.00 0.00 0.00 2.29
2984 5591 7.698130 GGCTCACATTTTGTAATTCTCACATAC 59.302 37.037 0.00 0.00 0.00 2.39
2985 5592 7.426456 GCTCACATTTTGTAATTCTCACATACG 59.574 37.037 0.00 0.00 0.00 3.06
2986 5593 7.747888 TCACATTTTGTAATTCTCACATACGG 58.252 34.615 0.00 0.00 0.00 4.02
2988 5595 7.904977 CACATTTTGTAATTCTCACATACGGAG 59.095 37.037 0.00 0.00 0.00 4.63
2990 5597 7.972832 TTTTGTAATTCTCACATACGGAGTT 57.027 32.000 0.00 0.00 37.78 3.01
2991 5598 6.961359 TTGTAATTCTCACATACGGAGTTG 57.039 37.500 0.00 0.00 37.78 3.16
3093 5726 5.317733 TGGTCCTTATTTTTATGCAACCG 57.682 39.130 0.00 0.00 0.00 4.44
3109 5743 3.607078 GCAACCGGATCTTAATTCGATGC 60.607 47.826 9.46 0.00 38.47 3.91
3121 5755 2.004583 TTCGATGCGGGAAAGTACTG 57.995 50.000 0.00 0.00 0.00 2.74
3262 5967 2.806244 ACACTTTCTTGTACGGCATGTC 59.194 45.455 0.00 0.00 0.00 3.06
3268 5973 2.559231 TCTTGTACGGCATGTCTACACA 59.441 45.455 8.52 1.31 36.78 3.72
3269 5974 2.357327 TGTACGGCATGTCTACACAC 57.643 50.000 0.00 0.00 34.48 3.82
3278 5991 0.318360 TGTCTACACACCTTGCGTCG 60.318 55.000 0.00 0.00 0.00 5.12
3285 5998 0.033504 ACACCTTGCGTCGAGACAAT 59.966 50.000 0.00 0.00 0.00 2.71
3300 6022 6.528423 GTCGAGACAATAGATGTACATATGCC 59.472 42.308 13.22 0.00 44.12 4.40
3475 6293 2.430332 CAGAGGAAACAGCCAACCAAAA 59.570 45.455 0.00 0.00 0.00 2.44
3476 6294 3.070015 CAGAGGAAACAGCCAACCAAAAT 59.930 43.478 0.00 0.00 0.00 1.82
3477 6295 3.711190 AGAGGAAACAGCCAACCAAAATT 59.289 39.130 0.00 0.00 0.00 1.82
3656 6665 3.832237 CTCGTGCAAGTGGGCCAGT 62.832 63.158 6.40 7.51 0.00 4.00
3675 6684 3.092301 AGTAGCTTGATTGAAAAGGCCC 58.908 45.455 0.00 0.00 0.00 5.80
3727 6742 0.596600 TTGTCACTTCCACGTCGCTC 60.597 55.000 0.00 0.00 0.00 5.03
4086 7174 1.086696 ATGCGGTGTACATGAACAGC 58.913 50.000 0.00 7.84 42.93 4.40
4105 7193 0.605589 CAAGGTCGCCTCTCACTCTT 59.394 55.000 0.00 0.00 30.89 2.85
4228 7346 4.806342 TTTTCGCTGACTAAAGTCCAAC 57.194 40.909 7.63 0.00 44.15 3.77
4249 7367 9.817809 TCCAACTCTTATCACATACTTTGATAC 57.182 33.333 0.00 0.00 36.01 2.24
4279 7397 9.998106 TTAAAGCTAGTTAGAACATCTTCAACT 57.002 29.630 0.00 2.23 34.68 3.16
4289 7448 4.785346 ACATCTTCAACTGGATATGGCT 57.215 40.909 0.00 0.00 0.00 4.75
4292 7451 3.031013 TCTTCAACTGGATATGGCTCGA 58.969 45.455 0.00 0.00 0.00 4.04
4294 7453 4.101585 TCTTCAACTGGATATGGCTCGAAT 59.898 41.667 0.00 0.00 0.00 3.34
4325 7484 4.414337 TGAAAAATTTCACCCAACTGGG 57.586 40.909 13.55 13.55 44.56 4.45
4344 7503 2.440599 CCCCTCCCACCCACTTTG 59.559 66.667 0.00 0.00 0.00 2.77
4354 7513 3.435026 CCCACCCACTTTGTCCCTATATG 60.435 52.174 0.00 0.00 0.00 1.78
4356 7515 4.451900 CACCCACTTTGTCCCTATATGTC 58.548 47.826 0.00 0.00 0.00 3.06
4358 7517 3.716872 CCCACTTTGTCCCTATATGTCCT 59.283 47.826 0.00 0.00 0.00 3.85
4366 7527 4.654262 TGTCCCTATATGTCCTCTTCAACC 59.346 45.833 0.00 0.00 0.00 3.77
4380 7541 2.461300 TCAACCGGATCTCTCCTCAT 57.539 50.000 9.46 0.00 39.65 2.90
4392 7553 5.462530 TCTCTCCTCATCGTTGTTTGTAA 57.537 39.130 0.00 0.00 0.00 2.41
4410 7571 4.634199 TGTAAACCCTCAAACTTAGACCG 58.366 43.478 0.00 0.00 0.00 4.79
4413 7574 3.949842 ACCCTCAAACTTAGACCGTAC 57.050 47.619 0.00 0.00 0.00 3.67
4456 7617 1.303561 GGCATGTCCAAGCAGTCCA 60.304 57.895 0.00 0.00 34.01 4.02
4459 7620 1.003355 ATGTCCAAGCAGTCCACCG 60.003 57.895 0.00 0.00 0.00 4.94
4464 7625 1.227527 CAAGCAGTCCACCGTGTCA 60.228 57.895 0.00 0.00 0.00 3.58
4505 7666 8.851145 GGACCACTTTCTCTTTATTCTTTCTTT 58.149 33.333 0.00 0.00 0.00 2.52
4518 7679 5.452341 TTCTTTCTTTTATCCCTCTCCCC 57.548 43.478 0.00 0.00 0.00 4.81
4535 7696 5.600749 TCTCCCCCTCACTAGTAGAAAAAT 58.399 41.667 3.59 0.00 0.00 1.82
4657 7818 2.035626 CCCGGACCAATGTGCCTT 59.964 61.111 0.73 0.00 0.00 4.35
4757 7918 1.672356 GCGTCAGCATTCCAGTGGT 60.672 57.895 9.54 0.00 44.35 4.16
5135 8310 1.732259 GGCTTTACTGATGACGTGGTG 59.268 52.381 0.00 0.00 0.00 4.17
5159 8334 2.532250 AAGAATCCCGCCAATTCCTT 57.468 45.000 0.00 0.00 34.34 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.137543 AGCTCCTCAAACGATTCACTTTT 58.862 39.130 0.00 0.00 0.00 2.27
4 5 3.744660 AGCTCCTCAAACGATTCACTTT 58.255 40.909 0.00 0.00 0.00 2.66
5 6 3.409026 AGCTCCTCAAACGATTCACTT 57.591 42.857 0.00 0.00 0.00 3.16
6 7 4.499183 CTTAGCTCCTCAAACGATTCACT 58.501 43.478 0.00 0.00 0.00 3.41
7 8 3.062774 GCTTAGCTCCTCAAACGATTCAC 59.937 47.826 0.00 0.00 0.00 3.18
8 9 3.055819 AGCTTAGCTCCTCAAACGATTCA 60.056 43.478 0.00 0.00 30.62 2.57
9 10 3.526534 AGCTTAGCTCCTCAAACGATTC 58.473 45.455 0.00 0.00 30.62 2.52
43 427 3.561310 TGCATTAAGAGCATTTCTAGCCG 59.439 43.478 1.57 0.00 37.02 5.52
54 438 3.837213 TTGAGCAGTTGCATTAAGAGC 57.163 42.857 6.90 0.00 45.16 4.09
93 477 4.135153 CGGCCTCGTGGGACTCAG 62.135 72.222 0.00 0.00 42.26 3.35
110 494 1.202510 AGATCCAGATCAGAACAGCGC 60.203 52.381 10.17 0.00 40.22 5.92
111 495 2.100418 TGAGATCCAGATCAGAACAGCG 59.900 50.000 10.17 0.00 40.22 5.18
116 500 2.100418 CAGCGTGAGATCCAGATCAGAA 59.900 50.000 10.17 0.00 40.22 3.02
175 559 2.945668 GGTCCTGTTGATATCTTGGCAC 59.054 50.000 3.98 2.56 0.00 5.01
241 625 3.733344 TTACAGCGCATCGGAGGGC 62.733 63.158 11.47 8.58 46.61 5.19
244 628 2.230940 CGGTTACAGCGCATCGGAG 61.231 63.158 11.47 0.00 30.39 4.63
268 655 2.622942 GTGGAGCACATTGGTTTCTTGA 59.377 45.455 0.00 0.00 34.08 3.02
323 712 1.265905 AGCAAAATTCGTCGGTTGGTC 59.734 47.619 0.00 0.00 0.00 4.02
376 765 6.327365 AGGAGACAATTTCTGGAAACCAATTT 59.673 34.615 0.00 0.00 33.22 1.82
388 777 5.779241 TCCAATACCAGGAGACAATTTCT 57.221 39.130 0.00 0.00 37.23 2.52
399 788 3.131046 GCTGTCCAAAATCCAATACCAGG 59.869 47.826 0.00 0.00 0.00 4.45
400 789 3.181497 CGCTGTCCAAAATCCAATACCAG 60.181 47.826 0.00 0.00 0.00 4.00
421 1191 1.021202 AGCCTGAGAGACTTCGATCG 58.979 55.000 9.36 9.36 0.00 3.69
422 1192 4.277174 TCATAAGCCTGAGAGACTTCGATC 59.723 45.833 0.00 0.00 0.00 3.69
423 1193 4.037446 GTCATAAGCCTGAGAGACTTCGAT 59.963 45.833 0.00 0.00 0.00 3.59
424 1194 3.378742 GTCATAAGCCTGAGAGACTTCGA 59.621 47.826 0.00 0.00 0.00 3.71
473 1250 8.191446 TCTGAATATTCTGCAGACACTACTAAC 58.809 37.037 18.03 3.00 34.02 2.34
481 1258 5.412594 GGTGTTTCTGAATATTCTGCAGACA 59.587 40.000 18.03 9.92 38.30 3.41
524 1301 3.935203 CCAACGACACAGAATCAGCTAAT 59.065 43.478 0.00 0.00 0.00 1.73
525 1302 3.325870 CCAACGACACAGAATCAGCTAA 58.674 45.455 0.00 0.00 0.00 3.09
526 1303 2.930887 GCCAACGACACAGAATCAGCTA 60.931 50.000 0.00 0.00 0.00 3.32
527 1304 1.800805 CCAACGACACAGAATCAGCT 58.199 50.000 0.00 0.00 0.00 4.24
528 1305 0.166814 GCCAACGACACAGAATCAGC 59.833 55.000 0.00 0.00 0.00 4.26
531 1308 3.424962 GCTTAAGCCAACGACACAGAATC 60.425 47.826 17.00 0.00 34.31 2.52
541 1318 4.695217 TTTATTCCTGCTTAAGCCAACG 57.305 40.909 24.30 10.06 41.18 4.10
607 1881 1.815003 AGATTTCTTCGCCTTTGCCTG 59.185 47.619 0.00 0.00 0.00 4.85
609 1883 4.166523 GTTTAGATTTCTTCGCCTTTGCC 58.833 43.478 0.00 0.00 0.00 4.52
610 1884 3.846335 CGTTTAGATTTCTTCGCCTTTGC 59.154 43.478 0.00 0.00 0.00 3.68
611 1885 4.153475 TCCGTTTAGATTTCTTCGCCTTTG 59.847 41.667 0.00 0.00 0.00 2.77
613 1887 3.933332 CTCCGTTTAGATTTCTTCGCCTT 59.067 43.478 0.00 0.00 0.00 4.35
615 1889 3.518590 TCTCCGTTTAGATTTCTTCGCC 58.481 45.455 0.00 0.00 0.00 5.54
616 1890 6.823678 TTATCTCCGTTTAGATTTCTTCGC 57.176 37.500 0.00 0.00 37.41 4.70
617 1891 7.794349 GCAATTATCTCCGTTTAGATTTCTTCG 59.206 37.037 0.00 0.00 37.41 3.79
627 1901 7.045416 TCTAGCTTTGCAATTATCTCCGTTTA 58.955 34.615 0.00 0.00 0.00 2.01
725 2009 4.824848 GTGCAACACGAGAACAGTATAG 57.175 45.455 0.00 0.00 36.32 1.31
752 2036 0.395311 CCCTACGTACTCCTCCTGCA 60.395 60.000 0.00 0.00 0.00 4.41
754 2038 1.108132 GGCCCTACGTACTCCTCCTG 61.108 65.000 0.00 0.00 0.00 3.86
760 2044 0.752376 AGCTCTGGCCCTACGTACTC 60.752 60.000 0.00 0.00 39.73 2.59
762 2046 0.102663 GAAGCTCTGGCCCTACGTAC 59.897 60.000 0.00 0.00 39.73 3.67
771 2055 1.135575 CCACGAATTTGAAGCTCTGGC 60.136 52.381 0.00 0.00 39.06 4.85
782 2157 0.693049 AGACAGGAGGCCACGAATTT 59.307 50.000 5.01 0.00 0.00 1.82
827 2202 3.705638 CACAGCACAGCACGACCG 61.706 66.667 0.00 0.00 0.00 4.79
849 2224 1.893808 CCCATGGCCATCGTACAGC 60.894 63.158 17.61 0.00 0.00 4.40
850 2225 0.397941 ATCCCATGGCCATCGTACAG 59.602 55.000 17.61 2.97 0.00 2.74
851 2226 0.108396 CATCCCATGGCCATCGTACA 59.892 55.000 17.61 0.00 0.00 2.90
852 2227 0.606401 CCATCCCATGGCCATCGTAC 60.606 60.000 17.61 0.00 44.70 3.67
853 2228 1.760527 CCATCCCATGGCCATCGTA 59.239 57.895 17.61 3.82 44.70 3.43
854 2229 2.517414 CCATCCCATGGCCATCGT 59.483 61.111 17.61 0.00 44.70 3.73
873 2248 4.332828 ACCTCCTCCAAAATAAAAGGACG 58.667 43.478 0.00 0.00 34.29 4.79
907 2282 4.434520 GAAGAACTTAATGAGGAGGACGG 58.565 47.826 0.00 0.00 0.00 4.79
926 2301 0.341609 AAGGGAGGAGGAGGAGGAAG 59.658 60.000 0.00 0.00 0.00 3.46
927 2302 0.340208 GAAGGGAGGAGGAGGAGGAA 59.660 60.000 0.00 0.00 0.00 3.36
928 2303 1.595058 GGAAGGGAGGAGGAGGAGGA 61.595 65.000 0.00 0.00 0.00 3.71
929 2304 1.074850 GGAAGGGAGGAGGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
930 2305 0.689412 GTGGAAGGGAGGAGGAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
933 2315 0.980231 CTGGTGGAAGGGAGGAGGAG 60.980 65.000 0.00 0.00 0.00 3.69
951 2336 3.244112 CCGATAAAGATAAACCCGGCTCT 60.244 47.826 0.00 0.00 0.00 4.09
1003 2393 4.320202 GCCGATGATGAAGAGAGTAGAGTC 60.320 50.000 0.00 0.00 0.00 3.36
1008 2398 2.290916 GACGCCGATGATGAAGAGAGTA 59.709 50.000 0.00 0.00 0.00 2.59
1057 2491 4.882559 ACAAAGATGGGAGAGAGAGAGAT 58.117 43.478 0.00 0.00 0.00 2.75
1070 2504 1.608590 ACGGTCAAGCAACAAAGATGG 59.391 47.619 0.00 0.00 0.00 3.51
1071 2505 3.249799 TGTACGGTCAAGCAACAAAGATG 59.750 43.478 0.00 0.00 0.00 2.90
1072 2506 3.472652 TGTACGGTCAAGCAACAAAGAT 58.527 40.909 0.00 0.00 0.00 2.40
1082 2791 2.093973 AGATCCAAGCTGTACGGTCAAG 60.094 50.000 3.10 0.00 0.00 3.02
1195 2904 5.234972 GGGAAACAAAAGAAATGCTTCTGTG 59.765 40.000 0.00 0.00 36.80 3.66
1279 3074 0.959372 TCGAAGTCCTCAGTCGACCC 60.959 60.000 13.01 0.00 38.78 4.46
1287 3082 3.760035 GCCGCCTCGAAGTCCTCA 61.760 66.667 0.00 0.00 0.00 3.86
1496 3325 6.015772 TGCCTAAAAAGAAACAGATGGGTTAC 60.016 38.462 0.00 0.00 0.00 2.50
1595 3430 4.296621 TGCCGCCTCTATAGTCTATACA 57.703 45.455 0.00 0.00 0.00 2.29
1613 3467 4.326826 TCCGATCTGGATTAATTGATGCC 58.673 43.478 0.00 0.00 43.74 4.40
1628 3482 7.776030 TCAAAGAAATAGTACTCTCTCCGATCT 59.224 37.037 0.00 0.00 0.00 2.75
1633 3487 8.088981 TGTGTTCAAAGAAATAGTACTCTCTCC 58.911 37.037 0.00 0.00 0.00 3.71
1637 3491 9.778741 TTCATGTGTTCAAAGAAATAGTACTCT 57.221 29.630 0.00 0.00 0.00 3.24
1701 3557 8.871686 AAACATTCAATTAACCAGACAGTTTC 57.128 30.769 0.00 0.00 0.00 2.78
1709 3565 9.329913 CTTAACGAGAAACATTCAATTAACCAG 57.670 33.333 0.00 0.00 0.00 4.00
1722 3578 5.068723 CCTATAGCTCCCTTAACGAGAAACA 59.931 44.000 0.00 0.00 0.00 2.83
1748 3607 0.179029 CCATTTACGGGGGAAGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
1759 3618 4.124851 AGACAAGCTACTCCCATTTACG 57.875 45.455 0.00 0.00 0.00 3.18
1800 3671 3.149005 ACCGAACAAGCCCTTAATGAA 57.851 42.857 0.00 0.00 0.00 2.57
1812 3683 2.621055 CAAATCCACCTCAACCGAACAA 59.379 45.455 0.00 0.00 0.00 2.83
1813 3684 2.158740 TCAAATCCACCTCAACCGAACA 60.159 45.455 0.00 0.00 0.00 3.18
1814 3685 2.500229 TCAAATCCACCTCAACCGAAC 58.500 47.619 0.00 0.00 0.00 3.95
1815 3686 2.940994 TCAAATCCACCTCAACCGAA 57.059 45.000 0.00 0.00 0.00 4.30
1816 3687 2.552155 CCTTCAAATCCACCTCAACCGA 60.552 50.000 0.00 0.00 0.00 4.69
1817 3688 1.812571 CCTTCAAATCCACCTCAACCG 59.187 52.381 0.00 0.00 0.00 4.44
1818 3689 2.171003 CCCTTCAAATCCACCTCAACC 58.829 52.381 0.00 0.00 0.00 3.77
1820 3691 2.069775 TCCCCTTCAAATCCACCTCAA 58.930 47.619 0.00 0.00 0.00 3.02
1821 3692 1.753903 TCCCCTTCAAATCCACCTCA 58.246 50.000 0.00 0.00 0.00 3.86
1822 3693 3.026694 CAATCCCCTTCAAATCCACCTC 58.973 50.000 0.00 0.00 0.00 3.85
1823 3694 2.654385 TCAATCCCCTTCAAATCCACCT 59.346 45.455 0.00 0.00 0.00 4.00
1824 3695 3.026694 CTCAATCCCCTTCAAATCCACC 58.973 50.000 0.00 0.00 0.00 4.61
1825 3696 3.026694 CCTCAATCCCCTTCAAATCCAC 58.973 50.000 0.00 0.00 0.00 4.02
1826 3697 2.024080 CCCTCAATCCCCTTCAAATCCA 60.024 50.000 0.00 0.00 0.00 3.41
1827 3698 2.670939 CCCTCAATCCCCTTCAAATCC 58.329 52.381 0.00 0.00 0.00 3.01
1828 3699 2.670939 CCCCTCAATCCCCTTCAAATC 58.329 52.381 0.00 0.00 0.00 2.17
1830 3701 0.709992 CCCCCTCAATCCCCTTCAAA 59.290 55.000 0.00 0.00 0.00 2.69
1832 3703 0.178816 TTCCCCCTCAATCCCCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
1833 3704 1.235756 ATTCCCCCTCAATCCCCTTC 58.764 55.000 0.00 0.00 0.00 3.46
1835 3706 2.624846 TAATTCCCCCTCAATCCCCT 57.375 50.000 0.00 0.00 0.00 4.79
1836 3707 3.502303 GGATTAATTCCCCCTCAATCCCC 60.502 52.174 3.43 0.00 39.05 4.81
1837 3708 3.779444 GGATTAATTCCCCCTCAATCCC 58.221 50.000 3.43 0.00 39.05 3.85
1849 3720 2.387757 TGGCTTGCAGGGGATTAATTC 58.612 47.619 0.00 0.00 0.00 2.17
1850 3721 2.548464 TGGCTTGCAGGGGATTAATT 57.452 45.000 0.00 0.00 0.00 1.40
1852 3723 2.178580 CTTTGGCTTGCAGGGGATTAA 58.821 47.619 0.00 0.00 0.00 1.40
1853 3724 1.077005 ACTTTGGCTTGCAGGGGATTA 59.923 47.619 0.00 0.00 0.00 1.75
1854 3725 0.178924 ACTTTGGCTTGCAGGGGATT 60.179 50.000 0.00 0.00 0.00 3.01
1856 3727 1.228552 GACTTTGGCTTGCAGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
1857 3728 2.278330 GGACTTTGGCTTGCAGGGG 61.278 63.158 0.00 0.00 0.00 4.79
1858 3729 2.278330 GGGACTTTGGCTTGCAGGG 61.278 63.158 0.00 0.00 0.00 4.45
1860 3731 1.962144 CAGGGACTTTGGCTTGCAG 59.038 57.895 0.00 0.00 34.60 4.41
1862 3733 1.747325 TTGCAGGGACTTTGGCTTGC 61.747 55.000 0.00 0.00 34.60 4.01
1863 3734 0.752054 TTTGCAGGGACTTTGGCTTG 59.248 50.000 0.00 0.00 34.60 4.01
1865 3736 1.260544 GATTTGCAGGGACTTTGGCT 58.739 50.000 0.00 0.00 34.60 4.75
1866 3737 0.247460 GGATTTGCAGGGACTTTGGC 59.753 55.000 0.00 0.00 34.60 4.52
1867 3738 0.897621 GGGATTTGCAGGGACTTTGG 59.102 55.000 0.00 0.00 34.60 3.28
1868 3739 0.897621 GGGGATTTGCAGGGACTTTG 59.102 55.000 0.00 0.00 34.60 2.77
1869 3740 0.786435 AGGGGATTTGCAGGGACTTT 59.214 50.000 0.00 0.00 34.60 2.66
1870 3741 0.786435 AAGGGGATTTGCAGGGACTT 59.214 50.000 0.00 0.00 34.60 3.01
1871 3742 0.332972 GAAGGGGATTTGCAGGGACT 59.667 55.000 0.00 0.00 43.88 3.85
1872 3743 0.039618 TGAAGGGGATTTGCAGGGAC 59.960 55.000 0.00 0.00 0.00 4.46
1873 3744 0.783206 TTGAAGGGGATTTGCAGGGA 59.217 50.000 0.00 0.00 0.00 4.20
1874 3745 1.758862 GATTGAAGGGGATTTGCAGGG 59.241 52.381 0.00 0.00 0.00 4.45
1875 3746 1.758862 GGATTGAAGGGGATTTGCAGG 59.241 52.381 0.00 0.00 0.00 4.85
1876 3747 2.167075 GTGGATTGAAGGGGATTTGCAG 59.833 50.000 0.00 0.00 0.00 4.41
1877 3748 2.178580 GTGGATTGAAGGGGATTTGCA 58.821 47.619 0.00 0.00 0.00 4.08
1878 3749 2.460669 AGTGGATTGAAGGGGATTTGC 58.539 47.619 0.00 0.00 0.00 3.68
1879 3750 3.196254 CCAAGTGGATTGAAGGGGATTTG 59.804 47.826 0.00 0.00 41.83 2.32
1880 3751 3.444029 CCAAGTGGATTGAAGGGGATTT 58.556 45.455 0.00 0.00 41.83 2.17
1881 3752 2.292455 CCCAAGTGGATTGAAGGGGATT 60.292 50.000 0.00 0.00 41.83 3.01
1883 3754 0.704076 CCCAAGTGGATTGAAGGGGA 59.296 55.000 0.00 0.00 41.83 4.81
1884 3755 0.324645 CCCCAAGTGGATTGAAGGGG 60.325 60.000 0.00 0.00 41.83 4.79
1885 3756 0.409484 ACCCCAAGTGGATTGAAGGG 59.591 55.000 0.00 0.00 42.92 3.95
1886 3757 1.895131 CAACCCCAAGTGGATTGAAGG 59.105 52.381 0.00 0.00 41.83 3.46
1887 3758 1.895131 CCAACCCCAAGTGGATTGAAG 59.105 52.381 13.13 0.00 41.83 3.02
1888 3759 1.482177 CCCAACCCCAAGTGGATTGAA 60.482 52.381 13.13 0.00 41.83 2.69
1889 3760 0.114168 CCCAACCCCAAGTGGATTGA 59.886 55.000 13.13 0.00 41.83 2.57
1893 3764 1.761711 TAATCCCAACCCCAAGTGGA 58.238 50.000 0.00 0.00 37.39 4.02
1894 3765 2.176045 GTTAATCCCAACCCCAAGTGG 58.824 52.381 0.00 0.00 0.00 4.00
1896 3767 1.272258 CGGTTAATCCCAACCCCAAGT 60.272 52.381 0.00 0.00 44.37 3.16
1897 3768 1.004979 TCGGTTAATCCCAACCCCAAG 59.995 52.381 0.00 0.00 44.37 3.61
1898 3769 1.073931 TCGGTTAATCCCAACCCCAA 58.926 50.000 0.00 0.00 44.37 4.12
1899 3770 1.073931 TTCGGTTAATCCCAACCCCA 58.926 50.000 0.00 0.00 44.37 4.96
1900 3771 2.447408 ATTCGGTTAATCCCAACCCC 57.553 50.000 0.00 0.00 44.37 4.95
1901 3772 4.202080 GCTTTATTCGGTTAATCCCAACCC 60.202 45.833 0.00 0.00 44.37 4.11
1902 3773 4.202080 GGCTTTATTCGGTTAATCCCAACC 60.202 45.833 0.00 0.00 43.88 3.77
1903 3774 4.643334 AGGCTTTATTCGGTTAATCCCAAC 59.357 41.667 0.00 0.00 0.00 3.77
1904 3775 4.862371 AGGCTTTATTCGGTTAATCCCAA 58.138 39.130 0.00 0.00 0.00 4.12
1905 3776 4.513406 AGGCTTTATTCGGTTAATCCCA 57.487 40.909 0.00 0.00 0.00 4.37
1906 3777 6.293698 TCTTAGGCTTTATTCGGTTAATCCC 58.706 40.000 0.00 0.00 0.00 3.85
1911 3782 7.982761 TGTTTTCTTAGGCTTTATTCGGTTA 57.017 32.000 0.00 0.00 0.00 2.85
1912 3783 6.887626 TGTTTTCTTAGGCTTTATTCGGTT 57.112 33.333 0.00 0.00 0.00 4.44
1922 3793 8.749354 CACCCTTATTAATTGTTTTCTTAGGCT 58.251 33.333 0.00 0.00 0.00 4.58
1923 3794 7.491372 GCACCCTTATTAATTGTTTTCTTAGGC 59.509 37.037 0.00 0.00 0.00 3.93
1924 3795 8.749354 AGCACCCTTATTAATTGTTTTCTTAGG 58.251 33.333 0.00 0.00 0.00 2.69
1926 3797 9.303116 TGAGCACCCTTATTAATTGTTTTCTTA 57.697 29.630 0.00 0.00 0.00 2.10
1927 3798 8.189119 TGAGCACCCTTATTAATTGTTTTCTT 57.811 30.769 0.00 0.00 0.00 2.52
1929 3800 8.034804 ACATGAGCACCCTTATTAATTGTTTTC 58.965 33.333 0.00 0.00 0.00 2.29
1930 3801 7.906327 ACATGAGCACCCTTATTAATTGTTTT 58.094 30.769 0.00 0.00 0.00 2.43
1931 3802 7.480760 ACATGAGCACCCTTATTAATTGTTT 57.519 32.000 0.00 0.00 0.00 2.83
2001 4449 9.499479 AGACACAATTCATATGGAAGATATGTC 57.501 33.333 2.13 8.62 39.30 3.06
2011 4459 6.456047 CGACTCAACAGACACAATTCATATGG 60.456 42.308 2.13 0.00 0.00 2.74
2225 4806 1.102809 ACGACCCCGAAAAACCCAAC 61.103 55.000 0.00 0.00 39.50 3.77
2271 4852 3.104519 TGATTTTCATGTCCAGCCCAT 57.895 42.857 0.00 0.00 0.00 4.00
2484 5081 1.135257 CAAGGCCTCTCTACGTCAGTG 60.135 57.143 5.23 0.00 0.00 3.66
2611 5208 7.549488 CCTCCGTCTCATAATGTAAGACTTTTT 59.451 37.037 0.00 0.00 37.79 1.94
2612 5209 7.042335 CCTCCGTCTCATAATGTAAGACTTTT 58.958 38.462 0.00 0.00 37.79 2.27
2613 5210 6.380274 TCCTCCGTCTCATAATGTAAGACTTT 59.620 38.462 0.00 0.00 37.79 2.66
2614 5211 5.892119 TCCTCCGTCTCATAATGTAAGACTT 59.108 40.000 0.00 0.00 37.79 3.01
2615 5212 5.446860 TCCTCCGTCTCATAATGTAAGACT 58.553 41.667 0.00 0.00 37.79 3.24
2616 5213 5.769484 TCCTCCGTCTCATAATGTAAGAC 57.231 43.478 0.00 0.00 36.82 3.01
2617 5214 5.892119 ACTTCCTCCGTCTCATAATGTAAGA 59.108 40.000 0.00 0.00 0.00 2.10
2618 5215 6.150396 ACTTCCTCCGTCTCATAATGTAAG 57.850 41.667 0.00 0.00 0.00 2.34
2619 5216 6.238953 GCTACTTCCTCCGTCTCATAATGTAA 60.239 42.308 0.00 0.00 0.00 2.41
2620 5217 5.241064 GCTACTTCCTCCGTCTCATAATGTA 59.759 44.000 0.00 0.00 0.00 2.29
2621 5218 4.038162 GCTACTTCCTCCGTCTCATAATGT 59.962 45.833 0.00 0.00 0.00 2.71
2622 5219 4.038042 TGCTACTTCCTCCGTCTCATAATG 59.962 45.833 0.00 0.00 0.00 1.90
2623 5220 4.215908 TGCTACTTCCTCCGTCTCATAAT 58.784 43.478 0.00 0.00 0.00 1.28
2624 5221 3.628008 TGCTACTTCCTCCGTCTCATAA 58.372 45.455 0.00 0.00 0.00 1.90
2625 5222 3.292492 TGCTACTTCCTCCGTCTCATA 57.708 47.619 0.00 0.00 0.00 2.15
2626 5223 2.145397 TGCTACTTCCTCCGTCTCAT 57.855 50.000 0.00 0.00 0.00 2.90
2627 5224 1.919240 TTGCTACTTCCTCCGTCTCA 58.081 50.000 0.00 0.00 0.00 3.27
2628 5225 3.528597 ATTTGCTACTTCCTCCGTCTC 57.471 47.619 0.00 0.00 0.00 3.36
2629 5226 4.466726 AGTTATTTGCTACTTCCTCCGTCT 59.533 41.667 0.00 0.00 0.00 4.18
2630 5227 4.756502 AGTTATTTGCTACTTCCTCCGTC 58.243 43.478 0.00 0.00 0.00 4.79
2631 5228 4.677250 CGAGTTATTTGCTACTTCCTCCGT 60.677 45.833 0.00 0.00 0.00 4.69
2632 5229 3.797256 CGAGTTATTTGCTACTTCCTCCG 59.203 47.826 0.00 0.00 0.00 4.63
2633 5230 3.556365 GCGAGTTATTTGCTACTTCCTCC 59.444 47.826 0.00 0.00 33.06 4.30
2634 5231 4.434520 AGCGAGTTATTTGCTACTTCCTC 58.565 43.478 0.00 0.00 45.00 3.71
2635 5232 4.473477 AGCGAGTTATTTGCTACTTCCT 57.527 40.909 0.00 0.00 45.00 3.36
2636 5233 5.324697 CAAAGCGAGTTATTTGCTACTTCC 58.675 41.667 0.00 0.00 46.15 3.46
2723 5325 8.932791 GGTGTTGGTTATATCTACGGATTATTG 58.067 37.037 0.00 0.00 33.71 1.90
2732 5334 8.967664 TGTTTATGGGTGTTGGTTATATCTAC 57.032 34.615 0.00 0.00 0.00 2.59
2805 5407 0.324091 CCCCAGCCTCTGCATCTTTT 60.324 55.000 0.00 0.00 41.13 2.27
2806 5408 1.305623 CCCCAGCCTCTGCATCTTT 59.694 57.895 0.00 0.00 41.13 2.52
2886 5491 7.554732 CAAAAACAAACATACCATTTGACTCG 58.445 34.615 4.57 0.00 39.01 4.18
2971 5578 5.925506 TCCAACTCCGTATGTGAGAATTA 57.074 39.130 7.25 0.00 33.95 1.40
2972 5579 4.819105 TCCAACTCCGTATGTGAGAATT 57.181 40.909 7.25 0.00 33.95 2.17
2973 5580 4.819105 TTCCAACTCCGTATGTGAGAAT 57.181 40.909 7.25 0.00 33.95 2.40
2975 5582 4.610605 TTTTCCAACTCCGTATGTGAGA 57.389 40.909 7.25 0.00 33.95 3.27
2976 5583 6.978343 TTATTTTCCAACTCCGTATGTGAG 57.022 37.500 0.00 0.00 35.92 3.51
2977 5584 7.747155 TTTTATTTTCCAACTCCGTATGTGA 57.253 32.000 0.00 0.00 0.00 3.58
2979 5586 8.117813 ACATTTTATTTTCCAACTCCGTATGT 57.882 30.769 0.00 0.00 0.00 2.29
2980 5587 9.498307 GTACATTTTATTTTCCAACTCCGTATG 57.502 33.333 0.00 0.00 0.00 2.39
2982 5589 8.851541 AGTACATTTTATTTTCCAACTCCGTA 57.148 30.769 0.00 0.00 0.00 4.02
2983 5590 7.754851 AGTACATTTTATTTTCCAACTCCGT 57.245 32.000 0.00 0.00 0.00 4.69
2984 5591 9.550811 GTTAGTACATTTTATTTTCCAACTCCG 57.449 33.333 0.00 0.00 0.00 4.63
3073 5706 5.570234 TCCGGTTGCATAAAAATAAGGAC 57.430 39.130 0.00 0.00 0.00 3.85
3093 5726 3.040147 TCCCGCATCGAATTAAGATCC 57.960 47.619 0.00 0.00 0.00 3.36
3109 5743 2.972625 TGATCTTGCAGTACTTTCCCG 58.027 47.619 0.00 0.00 0.00 5.14
3151 5785 4.509600 TGTGTGTGTGTGTGTGTATGTATG 59.490 41.667 0.00 0.00 0.00 2.39
3262 5967 0.240145 TCTCGACGCAAGGTGTGTAG 59.760 55.000 0.00 0.00 41.77 2.74
3268 5973 1.816835 TCTATTGTCTCGACGCAAGGT 59.183 47.619 0.00 0.00 46.39 3.50
3269 5974 2.561733 TCTATTGTCTCGACGCAAGG 57.438 50.000 0.00 0.64 46.39 3.61
3278 5991 8.194104 CCTAGGCATATGTACATCTATTGTCTC 58.806 40.741 12.68 2.15 39.87 3.36
3285 5998 6.780522 TGTTGACCTAGGCATATGTACATCTA 59.219 38.462 12.68 6.72 0.00 1.98
3342 6065 7.982252 ACATCCATGGATTACATTCTACATCT 58.018 34.615 25.20 0.00 37.84 2.90
3343 6066 7.879677 TGACATCCATGGATTACATTCTACATC 59.120 37.037 25.20 8.24 37.84 3.06
3345 6068 7.135591 TGACATCCATGGATTACATTCTACA 57.864 36.000 25.20 10.87 37.84 2.74
3346 6069 8.037382 CATGACATCCATGGATTACATTCTAC 57.963 38.462 27.33 13.33 46.85 2.59
3381 6196 8.788238 ATCTCCCAGCCAAGAAAATAAAATAT 57.212 30.769 0.00 0.00 0.00 1.28
3475 6293 6.015918 AGATATCTGTCAGCCAGCTACTAAT 58.984 40.000 3.89 0.00 41.25 1.73
3476 6294 5.389520 AGATATCTGTCAGCCAGCTACTAA 58.610 41.667 3.89 0.00 41.25 2.24
3477 6295 4.991776 AGATATCTGTCAGCCAGCTACTA 58.008 43.478 3.89 0.00 41.25 1.82
3503 6328 0.104855 TAGCTTAGGTCCATGCAGCG 59.895 55.000 0.00 0.00 35.53 5.18
3656 6665 2.091541 CGGGCCTTTTCAATCAAGCTA 58.908 47.619 0.84 0.00 0.00 3.32
3727 6742 1.888436 TTAGCGGGGCAGACAGACAG 61.888 60.000 0.00 0.00 0.00 3.51
3978 7046 2.422276 AACATTCTGCCGTTTTCAGC 57.578 45.000 0.00 0.00 0.00 4.26
4086 7174 0.605589 AAGAGTGAGAGGCGACCTTG 59.394 55.000 0.00 0.00 31.76 3.61
4105 7193 2.582226 CGCTTCGTCGCTGCCATA 60.582 61.111 0.00 0.00 0.00 2.74
4217 7335 9.877178 AAGTATGTGATAAGAGTTGGACTTTAG 57.123 33.333 0.00 0.00 0.00 1.85
4268 7386 4.712476 GAGCCATATCCAGTTGAAGATGT 58.288 43.478 0.00 0.00 0.00 3.06
4279 7397 4.019858 CTCTCCTATTCGAGCCATATCCA 58.980 47.826 0.00 0.00 0.00 3.41
4289 7448 9.448438 TGAAATTTTTCATTCTCTCCTATTCGA 57.552 29.630 1.66 0.00 41.88 3.71
4344 7503 4.262079 CGGTTGAAGAGGACATATAGGGAC 60.262 50.000 0.00 0.00 0.00 4.46
4354 7513 2.100087 GAGAGATCCGGTTGAAGAGGAC 59.900 54.545 0.00 0.00 36.81 3.85
4356 7515 1.410882 GGAGAGATCCGGTTGAAGAGG 59.589 57.143 0.00 0.00 0.00 3.69
4358 7517 2.291605 TGAGGAGAGATCCGGTTGAAGA 60.292 50.000 0.00 0.00 34.28 2.87
4366 7527 1.678627 ACAACGATGAGGAGAGATCCG 59.321 52.381 0.00 0.00 34.28 4.18
4392 7553 3.305608 CGTACGGTCTAAGTTTGAGGGTT 60.306 47.826 7.57 0.00 0.00 4.11
4407 7568 1.337071 CATATGCTCCTCACGTACGGT 59.663 52.381 21.06 2.13 0.00 4.83
4410 7571 2.029828 CCCTCATATGCTCCTCACGTAC 60.030 54.545 0.00 0.00 0.00 3.67
4413 7574 1.043816 ACCCTCATATGCTCCTCACG 58.956 55.000 0.00 0.00 0.00 4.35
4459 7620 2.125106 GTGGGCCGGATCTGACAC 60.125 66.667 5.05 5.73 0.00 3.67
4505 7666 1.330155 AGTGAGGGGGAGAGGGATAA 58.670 55.000 0.00 0.00 0.00 1.75
4535 7696 5.776716 CCTTATGAACCGGGACTATTAGGTA 59.223 44.000 6.32 0.00 35.68 3.08
4642 7803 1.875963 GTGAAGGCACATTGGTCCG 59.124 57.895 0.00 0.00 44.51 4.79
4913 8088 6.426646 ACTTCTGTACTGAATGGTTCTCTT 57.573 37.500 14.67 0.00 0.00 2.85
5135 8310 3.181486 GGAATTGGCGGGATTCTTTCTTC 60.181 47.826 7.63 0.00 34.65 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.