Multiple sequence alignment - TraesCS5B01G039600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G039600 chr5B 100.000 5274 0 0 1 5274 44631494 44626221 0.000000e+00 9740
1 TraesCS5B01G039600 chr5B 93.227 502 28 4 163 662 44654531 44654034 0.000000e+00 734
2 TraesCS5B01G039600 chr5B 97.959 147 2 1 1 147 456551357 456551212 2.440000e-63 254
3 TraesCS5B01G039600 chr5B 97.279 147 4 0 1 147 513993183 513993037 3.150000e-62 250
4 TraesCS5B01G039600 chr5B 87.421 159 10 3 654 802 44652891 44652733 1.950000e-39 174
5 TraesCS5B01G039600 chr5A 95.892 3189 84 16 796 3949 35262591 35259415 0.000000e+00 5120
6 TraesCS5B01G039600 chr5A 94.931 651 31 2 3945 4594 35259463 35258814 0.000000e+00 1018
7 TraesCS5B01G039600 chr5A 88.831 385 36 4 214 598 35263370 35262993 2.880000e-127 466
8 TraesCS5B01G039600 chr5A 87.186 398 26 17 4594 4988 35258760 35258385 3.770000e-116 429
9 TraesCS5B01G039600 chr5A 93.878 147 9 0 4974 5120 35258193 35258047 6.870000e-54 222
10 TraesCS5B01G039600 chr5A 90.000 160 9 5 649 802 35262773 35262615 3.220000e-47 200
11 TraesCS5B01G039600 chr5D 95.211 2276 69 14 749 2990 44708979 44706710 0.000000e+00 3563
12 TraesCS5B01G039600 chr5D 93.167 761 36 8 3201 3949 44706703 44705947 0.000000e+00 1103
13 TraesCS5B01G039600 chr5D 95.260 654 20 5 3945 4594 44705997 44705351 0.000000e+00 1026
14 TraesCS5B01G039600 chr5D 92.830 530 25 9 4599 5120 44705292 44704768 0.000000e+00 756
15 TraesCS5B01G039600 chr5D 85.634 536 51 10 156 677 44710143 44709620 1.670000e-149 540
16 TraesCS5B01G039600 chr7D 96.226 159 6 0 5116 5274 191500607 191500765 1.460000e-65 261
17 TraesCS5B01G039600 chr7D 93.197 147 10 0 3005 3151 34757012 34756866 3.200000e-52 217
18 TraesCS5B01G039600 chr7A 95.597 159 7 0 5116 5274 166836082 166836240 6.780000e-64 255
19 TraesCS5B01G039600 chr7A 95.597 159 7 0 5116 5274 174842007 174842165 6.780000e-64 255
20 TraesCS5B01G039600 chr7A 93.197 147 10 0 3005 3151 421785012 421785158 3.200000e-52 217
21 TraesCS5B01G039600 chr3B 97.959 147 3 0 1 147 662610657 662610511 6.780000e-64 255
22 TraesCS5B01G039600 chr3B 97.297 148 4 0 1 148 658012882 658013029 8.770000e-63 252
23 TraesCS5B01G039600 chr3B 94.340 159 7 2 1 158 500538016 500538173 5.280000e-60 243
24 TraesCS5B01G039600 chr7B 97.297 148 3 1 1 148 395703687 395703833 3.150000e-62 250
25 TraesCS5B01G039600 chr4B 97.279 147 4 0 1 147 185762245 185762099 3.150000e-62 250
26 TraesCS5B01G039600 chr4B 96.053 152 5 1 1 152 66395821 66395971 4.080000e-61 246
27 TraesCS5B01G039600 chr4B 93.711 159 10 0 5116 5274 338423581 338423423 6.830000e-59 239
28 TraesCS5B01G039600 chr4B 93.082 159 11 0 5116 5274 394600163 394600005 3.180000e-57 233
29 TraesCS5B01G039600 chr2B 94.969 159 8 0 5116 5274 302911728 302911570 3.150000e-62 250
30 TraesCS5B01G039600 chr2B 90.385 156 9 4 3005 3158 91043242 91043393 3.220000e-47 200
31 TraesCS5B01G039600 chr1B 96.078 153 5 1 1 153 377458929 377459080 1.130000e-61 248
32 TraesCS5B01G039600 chr1B 94.340 159 9 0 5116 5274 410305704 410305862 1.470000e-60 244
33 TraesCS5B01G039600 chr1B 94.340 159 9 0 5116 5274 444940358 444940516 1.470000e-60 244
34 TraesCS5B01G039600 chr2A 93.711 159 9 1 5116 5274 448532179 448532022 2.460000e-58 237
35 TraesCS5B01G039600 chr2A 88.623 167 17 2 3005 3169 310409049 310408883 8.960000e-48 202
36 TraesCS5B01G039600 chr4A 92.517 147 11 0 3005 3151 460230655 460230801 1.490000e-50 211
37 TraesCS5B01G039600 chr1A 91.447 152 12 1 3005 3155 155857712 155857863 1.920000e-49 207
38 TraesCS5B01G039600 chr2D 87.931 174 19 2 2984 3157 302250257 302250086 2.490000e-48 204
39 TraesCS5B01G039600 chr6A 91.216 148 13 0 3005 3152 411770259 411770406 8.960000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G039600 chr5B 44626221 44631494 5273 True 9740.0 9740 100.000000 1 5274 1 chr5B.!!$R1 5273
1 TraesCS5B01G039600 chr5B 44652733 44654531 1798 True 454.0 734 90.324000 163 802 2 chr5B.!!$R4 639
2 TraesCS5B01G039600 chr5A 35258047 35263370 5323 True 1242.5 5120 91.786333 214 5120 6 chr5A.!!$R1 4906
3 TraesCS5B01G039600 chr5D 44704768 44710143 5375 True 1397.6 3563 92.420400 156 5120 5 chr5D.!!$R1 4964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 1.338136 CCCGCCCTCTAGTCAACCAT 61.338 60.000 0.00 0.00 0.00 3.55 F
134 135 1.410004 CCGCCCTCTAGTCAACCATA 58.590 55.000 0.00 0.00 0.00 2.74 F
1866 3830 1.664659 GCTCAGCTCATTGTACTGCAG 59.335 52.381 13.48 13.48 0.00 4.41 F
1910 3874 1.229428 TTTGCTGTCTTTCTGCTCCG 58.771 50.000 0.00 0.00 40.79 4.63 F
2753 4731 1.473257 GGCGGCATAGATGTTCACTCA 60.473 52.381 3.07 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 3308 0.109039 GCTCGAGCTCGGAGAAGTTT 60.109 55.000 33.98 0.00 40.29 2.66 R
1910 3874 0.319813 GTTGCATTGTCCTTGTGCCC 60.320 55.000 0.00 0.00 38.06 5.36 R
2753 4731 2.093973 CGGAAGAGAGGTTGCATACACT 60.094 50.000 0.00 0.00 0.00 3.55 R
3721 5700 2.280797 GGTGCCTGCGTTGTGAGA 60.281 61.111 0.00 0.00 0.00 3.27 R
4291 6274 0.250467 GGTTGCTCTGGTGAAGCAGA 60.250 55.000 11.43 11.43 39.85 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.925610 TGTCTTTGCATCATATAGGTTGTC 57.074 37.500 0.00 0.00 0.00 3.18
25 26 6.653020 TGTCTTTGCATCATATAGGTTGTCT 58.347 36.000 0.00 0.00 0.00 3.41
26 27 7.791029 TGTCTTTGCATCATATAGGTTGTCTA 58.209 34.615 0.00 0.00 0.00 2.59
27 28 7.710907 TGTCTTTGCATCATATAGGTTGTCTAC 59.289 37.037 0.00 0.00 0.00 2.59
28 29 7.710907 GTCTTTGCATCATATAGGTTGTCTACA 59.289 37.037 0.00 0.00 0.00 2.74
29 30 8.432013 TCTTTGCATCATATAGGTTGTCTACAT 58.568 33.333 0.00 0.00 0.00 2.29
30 31 9.710900 CTTTGCATCATATAGGTTGTCTACATA 57.289 33.333 0.00 0.00 0.00 2.29
31 32 9.710900 TTTGCATCATATAGGTTGTCTACATAG 57.289 33.333 0.00 0.00 0.00 2.23
32 33 8.422577 TGCATCATATAGGTTGTCTACATAGT 57.577 34.615 0.00 0.00 0.00 2.12
33 34 8.870116 TGCATCATATAGGTTGTCTACATAGTT 58.130 33.333 0.00 0.00 0.00 2.24
34 35 9.144747 GCATCATATAGGTTGTCTACATAGTTG 57.855 37.037 0.00 0.00 0.00 3.16
35 36 9.144747 CATCATATAGGTTGTCTACATAGTTGC 57.855 37.037 0.00 0.00 0.00 4.17
36 37 8.245195 TCATATAGGTTGTCTACATAGTTGCA 57.755 34.615 0.00 0.00 0.00 4.08
37 38 8.870116 TCATATAGGTTGTCTACATAGTTGCAT 58.130 33.333 0.00 0.00 0.00 3.96
41 42 7.366847 AGGTTGTCTACATAGTTGCATATCT 57.633 36.000 0.00 0.00 0.00 1.98
42 43 8.478775 AGGTTGTCTACATAGTTGCATATCTA 57.521 34.615 0.00 0.00 0.00 1.98
43 44 8.580720 AGGTTGTCTACATAGTTGCATATCTAG 58.419 37.037 0.00 0.00 0.00 2.43
44 45 8.577296 GGTTGTCTACATAGTTGCATATCTAGA 58.423 37.037 0.00 0.00 0.00 2.43
45 46 9.400638 GTTGTCTACATAGTTGCATATCTAGAC 57.599 37.037 12.38 12.38 35.69 2.59
46 47 8.691661 TGTCTACATAGTTGCATATCTAGACA 57.308 34.615 15.73 15.73 39.39 3.41
47 48 9.131791 TGTCTACATAGTTGCATATCTAGACAA 57.868 33.333 16.68 6.78 39.07 3.18
48 49 9.400638 GTCTACATAGTTGCATATCTAGACAAC 57.599 37.037 13.43 13.43 42.08 3.32
49 50 8.577296 TCTACATAGTTGCATATCTAGACAACC 58.423 37.037 16.29 3.97 42.61 3.77
50 51 7.366847 ACATAGTTGCATATCTAGACAACCT 57.633 36.000 16.29 9.28 42.61 3.50
51 52 8.478775 ACATAGTTGCATATCTAGACAACCTA 57.521 34.615 16.29 10.61 42.61 3.08
52 53 9.094578 ACATAGTTGCATATCTAGACAACCTAT 57.905 33.333 16.29 11.85 42.61 2.57
53 54 9.935241 CATAGTTGCATATCTAGACAACCTATT 57.065 33.333 16.29 5.12 42.61 1.73
56 57 9.113838 AGTTGCATATCTAGACAACCTATTTTG 57.886 33.333 16.29 0.00 42.61 2.44
57 58 8.893727 GTTGCATATCTAGACAACCTATTTTGT 58.106 33.333 11.17 0.00 42.55 2.83
58 59 9.461312 TTGCATATCTAGACAACCTATTTTGTT 57.539 29.630 0.00 0.00 39.88 2.83
59 60 8.892723 TGCATATCTAGACAACCTATTTTGTTG 58.107 33.333 0.00 1.85 46.60 3.33
60 61 7.857885 GCATATCTAGACAACCTATTTTGTTGC 59.142 37.037 0.00 0.00 45.42 4.17
61 62 8.892723 CATATCTAGACAACCTATTTTGTTGCA 58.107 33.333 0.00 0.00 45.42 4.08
62 63 7.759489 ATCTAGACAACCTATTTTGTTGCAA 57.241 32.000 0.00 0.00 45.42 4.08
63 64 7.202016 TCTAGACAACCTATTTTGTTGCAAG 57.798 36.000 0.00 0.00 45.42 4.01
64 65 5.200368 AGACAACCTATTTTGTTGCAAGG 57.800 39.130 0.00 0.00 45.42 3.61
65 66 4.649218 AGACAACCTATTTTGTTGCAAGGT 59.351 37.500 0.00 0.00 45.42 3.50
67 68 5.739959 ACAACCTATTTTGTTGCAAGGTTT 58.260 33.333 12.92 4.28 45.93 3.27
68 69 6.879400 ACAACCTATTTTGTTGCAAGGTTTA 58.121 32.000 12.92 0.00 45.93 2.01
69 70 7.331791 ACAACCTATTTTGTTGCAAGGTTTAA 58.668 30.769 12.92 0.00 45.93 1.52
70 71 7.824779 ACAACCTATTTTGTTGCAAGGTTTAAA 59.175 29.630 12.92 4.44 45.93 1.52
71 72 8.835439 CAACCTATTTTGTTGCAAGGTTTAAAT 58.165 29.630 12.92 10.28 45.93 1.40
72 73 8.972458 ACCTATTTTGTTGCAAGGTTTAAATT 57.028 26.923 0.00 0.00 37.25 1.82
73 74 8.835439 ACCTATTTTGTTGCAAGGTTTAAATTG 58.165 29.630 0.00 3.37 37.25 2.32
74 75 8.835439 CCTATTTTGTTGCAAGGTTTAAATTGT 58.165 29.630 0.00 0.00 0.00 2.71
80 81 9.436957 TTGTTGCAAGGTTTAAATTGTTAAAGA 57.563 25.926 0.00 0.00 39.34 2.52
81 82 9.436957 TGTTGCAAGGTTTAAATTGTTAAAGAA 57.563 25.926 0.00 0.00 39.34 2.52
85 86 9.433317 GCAAGGTTTAAATTGTTAAAGAAAAGC 57.567 29.630 4.04 0.00 39.34 3.51
104 105 8.826710 AGAAAAGCTTAAAAATTGTTAGTTGCC 58.173 29.630 0.00 0.00 0.00 4.52
105 106 8.731275 AAAAGCTTAAAAATTGTTAGTTGCCT 57.269 26.923 0.00 0.00 0.00 4.75
106 107 9.825109 AAAAGCTTAAAAATTGTTAGTTGCCTA 57.175 25.926 0.00 0.00 0.00 3.93
107 108 9.996554 AAAGCTTAAAAATTGTTAGTTGCCTAT 57.003 25.926 0.00 0.00 0.00 2.57
108 109 9.996554 AAGCTTAAAAATTGTTAGTTGCCTATT 57.003 25.926 0.00 0.00 0.00 1.73
109 110 9.639601 AGCTTAAAAATTGTTAGTTGCCTATTC 57.360 29.630 6.52 0.00 0.00 1.75
110 111 9.418045 GCTTAAAAATTGTTAGTTGCCTATTCA 57.582 29.630 0.00 0.00 0.00 2.57
112 113 9.699703 TTAAAAATTGTTAGTTGCCTATTCACC 57.300 29.630 0.00 0.00 0.00 4.02
113 114 5.914898 AATTGTTAGTTGCCTATTCACCC 57.085 39.130 0.00 0.00 0.00 4.61
114 115 3.359695 TGTTAGTTGCCTATTCACCCC 57.640 47.619 0.00 0.00 0.00 4.95
115 116 2.025699 TGTTAGTTGCCTATTCACCCCC 60.026 50.000 0.00 0.00 0.00 5.40
129 130 2.365105 CCCCCGCCCTCTAGTCAA 60.365 66.667 0.00 0.00 0.00 3.18
130 131 2.732619 CCCCCGCCCTCTAGTCAAC 61.733 68.421 0.00 0.00 0.00 3.18
131 132 2.732619 CCCCGCCCTCTAGTCAACC 61.733 68.421 0.00 0.00 0.00 3.77
132 133 1.987855 CCCGCCCTCTAGTCAACCA 60.988 63.158 0.00 0.00 0.00 3.67
133 134 1.338136 CCCGCCCTCTAGTCAACCAT 61.338 60.000 0.00 0.00 0.00 3.55
134 135 1.410004 CCGCCCTCTAGTCAACCATA 58.590 55.000 0.00 0.00 0.00 2.74
135 136 1.971357 CCGCCCTCTAGTCAACCATAT 59.029 52.381 0.00 0.00 0.00 1.78
136 137 2.028930 CCGCCCTCTAGTCAACCATATC 60.029 54.545 0.00 0.00 0.00 1.63
137 138 2.351835 CGCCCTCTAGTCAACCATATCG 60.352 54.545 0.00 0.00 0.00 2.92
138 139 2.891580 GCCCTCTAGTCAACCATATCGA 59.108 50.000 0.00 0.00 0.00 3.59
139 140 3.511934 GCCCTCTAGTCAACCATATCGAT 59.488 47.826 2.16 2.16 0.00 3.59
140 141 4.381079 GCCCTCTAGTCAACCATATCGATC 60.381 50.000 0.00 0.00 0.00 3.69
141 142 4.158764 CCCTCTAGTCAACCATATCGATCC 59.841 50.000 0.00 0.00 0.00 3.36
142 143 5.013547 CCTCTAGTCAACCATATCGATCCT 58.986 45.833 0.00 0.00 0.00 3.24
143 144 5.478679 CCTCTAGTCAACCATATCGATCCTT 59.521 44.000 0.00 0.00 0.00 3.36
144 145 6.015010 CCTCTAGTCAACCATATCGATCCTTT 60.015 42.308 0.00 0.00 0.00 3.11
145 146 6.982852 TCTAGTCAACCATATCGATCCTTTC 58.017 40.000 0.00 0.00 0.00 2.62
146 147 5.614324 AGTCAACCATATCGATCCTTTCA 57.386 39.130 0.00 0.00 0.00 2.69
147 148 5.605534 AGTCAACCATATCGATCCTTTCAG 58.394 41.667 0.00 0.00 0.00 3.02
148 149 4.752101 GTCAACCATATCGATCCTTTCAGG 59.248 45.833 0.00 0.00 36.46 3.86
212 213 3.829948 CAGACAATGCCAATCAACTCAC 58.170 45.455 0.00 0.00 0.00 3.51
319 322 6.543465 TCCCTACGTTTCATATTAGTTCTCGA 59.457 38.462 0.00 0.00 0.00 4.04
354 357 5.396362 CGTCTTTGTGCTAAATCAAGTTGTG 59.604 40.000 2.11 0.00 0.00 3.33
364 367 7.756272 TGCTAAATCAAGTTGTGCTAAATCATG 59.244 33.333 2.11 0.00 0.00 3.07
408 414 9.950496 GATGAGAGCATTTATTATCCCTAAGAA 57.050 33.333 0.00 0.00 34.11 2.52
523 529 7.787725 AGACCCGAATTATGTAAATGAACTC 57.212 36.000 0.00 0.00 0.00 3.01
566 572 8.497554 CAACATTTTTCACAAATAACATGGGAG 58.502 33.333 0.00 0.00 30.59 4.30
672 1999 9.038803 GTAGTAACTTGAAATAACCCTAATCGG 57.961 37.037 0.00 0.00 0.00 4.18
728 2401 7.651304 CAGTAGTATAATGAGAGTTGCAAGAGG 59.349 40.741 0.00 0.00 39.37 3.69
817 2760 7.865706 ACACATCTTGAATTAACTCCATACC 57.134 36.000 0.00 0.00 0.00 2.73
837 2780 3.055458 ACCCCAAACAAAACCACAAGAAG 60.055 43.478 0.00 0.00 0.00 2.85
898 2841 2.160853 ACCAACAACCCTCCTCCCC 61.161 63.158 0.00 0.00 0.00 4.81
953 2909 2.844839 AGCTCCGCTACCATCCCC 60.845 66.667 0.00 0.00 36.99 4.81
964 2920 2.140792 CCATCCCCAGACCCGGTAG 61.141 68.421 0.00 0.00 0.00 3.18
1144 3108 4.704103 TCGGCAGCTGGGAGGACT 62.704 66.667 17.12 0.00 0.00 3.85
1866 3830 1.664659 GCTCAGCTCATTGTACTGCAG 59.335 52.381 13.48 13.48 0.00 4.41
1910 3874 1.229428 TTTGCTGTCTTTCTGCTCCG 58.771 50.000 0.00 0.00 40.79 4.63
2002 3966 5.562307 GCATTGATCTTCCATTCTCCATTCG 60.562 44.000 0.00 0.00 0.00 3.34
2248 4218 6.875195 CCCAAAATGTTTTCTGATGCTACATT 59.125 34.615 0.00 0.00 40.17 2.71
2252 4222 9.768662 AAAATGTTTTCTGATGCTACATTTCTT 57.231 25.926 10.73 0.00 44.28 2.52
2253 4223 8.976986 AATGTTTTCTGATGCTACATTTCTTC 57.023 30.769 0.00 0.00 36.35 2.87
2292 4262 6.780031 TCTTTTTGAAATGGTATCAACCCTCA 59.220 34.615 0.00 0.00 46.16 3.86
2359 4337 4.336993 TGTTAACTTTTTGCAGTCGATGGT 59.663 37.500 7.22 0.00 0.00 3.55
2579 4557 3.949754 TCATGTTGCCTCATTTCCTCATC 59.050 43.478 0.00 0.00 0.00 2.92
2593 4571 3.990092 TCCTCATCGGATGGTAAATTCG 58.010 45.455 17.42 0.00 36.69 3.34
2657 4635 2.805671 TGTTGTACAGTTCTGCGAATGG 59.194 45.455 0.00 0.00 0.00 3.16
2753 4731 1.473257 GGCGGCATAGATGTTCACTCA 60.473 52.381 3.07 0.00 0.00 3.41
2855 4833 2.528818 CCCTGTGCCAGAGGAACCA 61.529 63.158 9.94 0.00 32.44 3.67
3060 5038 9.825109 TTTTTGTGAATCGGATGTATATAGACA 57.175 29.630 2.07 2.07 0.00 3.41
3061 5039 8.812147 TTTGTGAATCGGATGTATATAGACAC 57.188 34.615 1.52 0.00 30.52 3.67
3102 5080 3.195610 ACTCATTTCAGTCCGCATGTAGA 59.804 43.478 0.00 0.00 0.00 2.59
3104 5082 3.056179 TCATTTCAGTCCGCATGTAGACA 60.056 43.478 16.41 0.00 35.38 3.41
3184 5162 6.824305 AATGACTGAATCCTTTTTGTCGAT 57.176 33.333 0.00 0.00 0.00 3.59
3186 5164 5.063204 TGACTGAATCCTTTTTGTCGATGT 58.937 37.500 0.00 0.00 0.00 3.06
3215 5193 5.648178 TGCTACAGTTTGGTCTTCGTATA 57.352 39.130 0.00 0.00 0.00 1.47
3478 5456 4.951715 TCTTGGCAATGCTTCATTATCACT 59.048 37.500 4.82 0.00 32.35 3.41
3721 5700 6.233905 TCATATACATACACCTGTGCACTT 57.766 37.500 19.41 0.00 0.00 3.16
3734 5713 1.159713 TGCACTTCTCACAACGCAGG 61.160 55.000 0.00 0.00 0.00 4.85
3869 5848 7.342284 TCACTAAGGGTAAGATCTTTACTCTGG 59.658 40.741 14.36 12.55 35.97 3.86
3898 5877 3.252964 CGCATCGGTGTGCAAGAA 58.747 55.556 0.00 0.00 45.30 2.52
3901 5880 1.396648 CGCATCGGTGTGCAAGAAATA 59.603 47.619 0.00 0.00 45.30 1.40
3902 5881 2.159585 CGCATCGGTGTGCAAGAAATAA 60.160 45.455 0.00 0.00 45.30 1.40
3903 5882 3.669290 CGCATCGGTGTGCAAGAAATAAA 60.669 43.478 0.00 0.00 45.30 1.40
3904 5883 3.853671 GCATCGGTGTGCAAGAAATAAAG 59.146 43.478 0.00 0.00 44.43 1.85
3905 5884 4.615912 GCATCGGTGTGCAAGAAATAAAGT 60.616 41.667 0.00 0.00 44.43 2.66
3906 5885 5.391523 GCATCGGTGTGCAAGAAATAAAGTA 60.392 40.000 0.00 0.00 44.43 2.24
3907 5886 6.677920 GCATCGGTGTGCAAGAAATAAAGTAT 60.678 38.462 0.00 0.00 44.43 2.12
3908 5887 6.417191 TCGGTGTGCAAGAAATAAAGTATC 57.583 37.500 0.00 0.00 0.00 2.24
3909 5888 5.935206 TCGGTGTGCAAGAAATAAAGTATCA 59.065 36.000 0.00 0.00 0.00 2.15
3910 5889 6.597672 TCGGTGTGCAAGAAATAAAGTATCAT 59.402 34.615 0.00 0.00 0.00 2.45
3911 5890 6.907212 CGGTGTGCAAGAAATAAAGTATCATC 59.093 38.462 0.00 0.00 0.00 2.92
3912 5891 7.413988 CGGTGTGCAAGAAATAAAGTATCATCA 60.414 37.037 0.00 0.00 0.00 3.07
3913 5892 8.408601 GGTGTGCAAGAAATAAAGTATCATCAT 58.591 33.333 0.00 0.00 0.00 2.45
3914 5893 9.443283 GTGTGCAAGAAATAAAGTATCATCATC 57.557 33.333 0.00 0.00 0.00 2.92
3915 5894 9.176460 TGTGCAAGAAATAAAGTATCATCATCA 57.824 29.630 0.00 0.00 0.00 3.07
3923 5902 9.512588 AAATAAAGTATCATCATCATCTGACCC 57.487 33.333 0.00 0.00 36.48 4.46
3924 5903 6.760440 AAAGTATCATCATCATCTGACCCT 57.240 37.500 0.00 0.00 36.48 4.34
3925 5904 5.741962 AGTATCATCATCATCTGACCCTG 57.258 43.478 0.00 0.00 36.48 4.45
3926 5905 5.400870 AGTATCATCATCATCTGACCCTGA 58.599 41.667 0.00 0.00 36.48 3.86
3927 5906 5.842874 AGTATCATCATCATCTGACCCTGAA 59.157 40.000 0.00 0.00 36.48 3.02
3928 5907 5.844773 ATCATCATCATCTGACCCTGAAT 57.155 39.130 0.00 0.00 36.48 2.57
3929 5908 5.224821 TCATCATCATCTGACCCTGAATC 57.775 43.478 0.00 0.00 36.48 2.52
3930 5909 4.041321 TCATCATCATCTGACCCTGAATCC 59.959 45.833 0.00 0.00 36.48 3.01
3931 5910 3.387012 TCATCATCTGACCCTGAATCCA 58.613 45.455 0.00 0.00 0.00 3.41
3932 5911 3.390311 TCATCATCTGACCCTGAATCCAG 59.610 47.826 0.00 0.00 40.09 3.86
3933 5912 3.120468 TCATCTGACCCTGAATCCAGA 57.880 47.619 0.00 0.00 43.02 3.86
3934 5913 3.453868 TCATCTGACCCTGAATCCAGAA 58.546 45.455 0.00 0.00 43.02 3.02
3935 5914 3.453717 TCATCTGACCCTGAATCCAGAAG 59.546 47.826 0.00 0.00 43.02 2.85
3936 5915 3.190383 TCTGACCCTGAATCCAGAAGA 57.810 47.619 0.00 0.00 43.02 2.87
3937 5916 3.520696 TCTGACCCTGAATCCAGAAGAA 58.479 45.455 0.00 0.00 43.02 2.52
3938 5917 3.909995 TCTGACCCTGAATCCAGAAGAAA 59.090 43.478 0.00 0.00 43.02 2.52
3939 5918 4.350816 TCTGACCCTGAATCCAGAAGAAAA 59.649 41.667 0.00 0.00 43.02 2.29
3940 5919 5.060427 TGACCCTGAATCCAGAAGAAAAA 57.940 39.130 0.00 0.00 43.02 1.94
3974 5953 8.857374 ATATATCATCATCTGACCCTGAATCT 57.143 34.615 0.00 0.00 36.48 2.40
4008 5989 3.568430 AGTATCATCATCGTCTTACGGCA 59.432 43.478 0.00 0.00 42.81 5.69
4126 6109 1.809619 CACTACCACCATCACCGCG 60.810 63.158 0.00 0.00 0.00 6.46
4291 6274 2.512286 CACGGCGCTCATCCATGT 60.512 61.111 6.90 0.00 0.00 3.21
4322 6305 0.733150 GAGCAACCGATGGCTTAACC 59.267 55.000 0.00 0.00 41.22 2.85
4453 6438 4.279671 CGAGTTCCCTACATCTGCTCTATT 59.720 45.833 0.00 0.00 0.00 1.73
4490 6475 0.323725 ACCATGGACCTCACCATTGC 60.324 55.000 21.47 0.00 47.00 3.56
4526 6511 2.292292 ACAAACAAGGTACGCCATCAAC 59.708 45.455 0.00 0.00 37.19 3.18
4568 6553 2.392662 CTTCACCTCCTGGAGCTCATA 58.607 52.381 18.51 2.65 37.04 2.15
4577 6562 3.072038 TCCTGGAGCTCATACATTGGATG 59.928 47.826 17.19 2.13 0.00 3.51
4597 6636 3.016031 TGTTTGGATGGATGAATCACGG 58.984 45.455 0.00 0.00 0.00 4.94
4628 6667 1.072391 TTGCCGCGTGTAATGTACAG 58.928 50.000 4.92 0.00 39.77 2.74
4708 6755 3.006323 GGGAGCTGATGTCTCGTTGATAT 59.994 47.826 0.00 0.00 0.00 1.63
4713 6760 6.286758 AGCTGATGTCTCGTTGATATTGAAT 58.713 36.000 0.00 0.00 0.00 2.57
4859 6908 8.962679 TGTAGTTTATGGTTCTTGTTCTTGTTT 58.037 29.630 0.00 0.00 0.00 2.83
4860 6909 9.447040 GTAGTTTATGGTTCTTGTTCTTGTTTC 57.553 33.333 0.00 0.00 0.00 2.78
4884 6934 6.019156 TCGTTTTTGAAGAAACAAATCCATGC 60.019 34.615 0.00 0.00 39.01 4.06
4885 6935 6.018832 CGTTTTTGAAGAAACAAATCCATGCT 60.019 34.615 0.00 0.00 39.01 3.79
4922 6972 4.041198 ACTTTGACCTCGGGTTTGAGATTA 59.959 41.667 0.00 0.00 38.28 1.75
4923 6973 4.837093 TTGACCTCGGGTTTGAGATTAT 57.163 40.909 0.00 0.00 38.28 1.28
4924 6974 4.837093 TGACCTCGGGTTTGAGATTATT 57.163 40.909 0.00 0.00 38.28 1.40
4937 6987 7.649306 GGTTTGAGATTATTTGATACCATGTGC 59.351 37.037 0.00 0.00 0.00 4.57
5027 7284 3.879295 AGATGTTATGGCCGTTGATGAAG 59.121 43.478 0.77 0.00 0.00 3.02
5059 7316 8.761497 CATATGTTCTCATCAATCATTTTTGCC 58.239 33.333 0.00 0.00 35.70 4.52
5060 7317 6.099159 TGTTCTCATCAATCATTTTTGCCA 57.901 33.333 0.00 0.00 0.00 4.92
5062 7319 7.162761 TGTTCTCATCAATCATTTTTGCCATT 58.837 30.769 0.00 0.00 0.00 3.16
5131 7388 4.305989 TGATTTATTCCAAATCTGCGGC 57.694 40.909 10.20 0.00 37.50 6.53
5132 7389 3.698539 TGATTTATTCCAAATCTGCGGCA 59.301 39.130 1.29 1.29 37.50 5.69
5133 7390 4.159321 TGATTTATTCCAAATCTGCGGCAA 59.841 37.500 3.44 0.00 37.50 4.52
5134 7391 4.734398 TTTATTCCAAATCTGCGGCAAT 57.266 36.364 3.44 0.00 0.00 3.56
5135 7392 2.877043 ATTCCAAATCTGCGGCAATC 57.123 45.000 3.44 0.00 0.00 2.67
5136 7393 1.838112 TTCCAAATCTGCGGCAATCT 58.162 45.000 3.44 0.00 0.00 2.40
5137 7394 1.382522 TCCAAATCTGCGGCAATCTC 58.617 50.000 3.44 0.00 0.00 2.75
5138 7395 0.028505 CCAAATCTGCGGCAATCTCG 59.971 55.000 3.44 0.00 0.00 4.04
5139 7396 1.009078 CAAATCTGCGGCAATCTCGA 58.991 50.000 3.44 0.00 0.00 4.04
5140 7397 1.600957 CAAATCTGCGGCAATCTCGAT 59.399 47.619 3.44 0.00 0.00 3.59
5141 7398 1.506493 AATCTGCGGCAATCTCGATC 58.494 50.000 3.44 0.00 0.00 3.69
5142 7399 0.390492 ATCTGCGGCAATCTCGATCA 59.610 50.000 3.44 0.00 0.00 2.92
5143 7400 0.249197 TCTGCGGCAATCTCGATCAG 60.249 55.000 3.44 0.00 0.00 2.90
5144 7401 0.249197 CTGCGGCAATCTCGATCAGA 60.249 55.000 3.44 0.00 34.78 3.27
5146 7403 1.555741 GCGGCAATCTCGATCAGAGC 61.556 60.000 8.99 4.56 46.44 4.09
5147 7404 0.249197 CGGCAATCTCGATCAGAGCA 60.249 55.000 8.99 1.46 46.44 4.26
5148 7405 1.500108 GGCAATCTCGATCAGAGCAG 58.500 55.000 8.99 4.16 46.44 4.24
5149 7406 1.068281 GGCAATCTCGATCAGAGCAGA 59.932 52.381 8.99 0.00 46.44 4.26
5150 7407 2.482664 GGCAATCTCGATCAGAGCAGAA 60.483 50.000 8.99 0.00 46.44 3.02
5151 7408 3.193263 GCAATCTCGATCAGAGCAGAAA 58.807 45.455 8.99 0.00 46.44 2.52
5152 7409 3.620374 GCAATCTCGATCAGAGCAGAAAA 59.380 43.478 8.99 0.00 46.44 2.29
5153 7410 4.272991 GCAATCTCGATCAGAGCAGAAAAT 59.727 41.667 8.99 0.00 46.44 1.82
5154 7411 5.739387 CAATCTCGATCAGAGCAGAAAATG 58.261 41.667 8.99 0.00 46.44 2.32
5155 7412 4.725790 TCTCGATCAGAGCAGAAAATGA 57.274 40.909 8.99 0.00 46.44 2.57
5156 7413 4.680702 TCTCGATCAGAGCAGAAAATGAG 58.319 43.478 8.99 0.00 46.44 2.90
5157 7414 3.790091 TCGATCAGAGCAGAAAATGAGG 58.210 45.455 0.00 0.00 0.00 3.86
5158 7415 3.448660 TCGATCAGAGCAGAAAATGAGGA 59.551 43.478 0.00 0.00 0.00 3.71
5159 7416 4.100653 TCGATCAGAGCAGAAAATGAGGAT 59.899 41.667 0.00 0.00 0.00 3.24
5160 7417 4.211584 CGATCAGAGCAGAAAATGAGGATG 59.788 45.833 0.00 0.00 0.00 3.51
5161 7418 4.831674 TCAGAGCAGAAAATGAGGATGA 57.168 40.909 0.00 0.00 0.00 2.92
5162 7419 5.169992 TCAGAGCAGAAAATGAGGATGAA 57.830 39.130 0.00 0.00 0.00 2.57
5163 7420 5.183969 TCAGAGCAGAAAATGAGGATGAAG 58.816 41.667 0.00 0.00 0.00 3.02
5164 7421 5.046087 TCAGAGCAGAAAATGAGGATGAAGA 60.046 40.000 0.00 0.00 0.00 2.87
5165 7422 5.646793 CAGAGCAGAAAATGAGGATGAAGAA 59.353 40.000 0.00 0.00 0.00 2.52
5166 7423 5.647225 AGAGCAGAAAATGAGGATGAAGAAC 59.353 40.000 0.00 0.00 0.00 3.01
5167 7424 5.568392 AGCAGAAAATGAGGATGAAGAACT 58.432 37.500 0.00 0.00 0.00 3.01
5168 7425 6.008960 AGCAGAAAATGAGGATGAAGAACTT 58.991 36.000 0.00 0.00 0.00 2.66
5169 7426 6.072064 AGCAGAAAATGAGGATGAAGAACTTG 60.072 38.462 0.00 0.00 0.00 3.16
5170 7427 6.294397 GCAGAAAATGAGGATGAAGAACTTGT 60.294 38.462 0.00 0.00 0.00 3.16
5171 7428 7.655490 CAGAAAATGAGGATGAAGAACTTGTT 58.345 34.615 0.00 0.00 0.00 2.83
5172 7429 8.786898 CAGAAAATGAGGATGAAGAACTTGTTA 58.213 33.333 0.00 0.00 0.00 2.41
5173 7430 9.354673 AGAAAATGAGGATGAAGAACTTGTTAA 57.645 29.630 0.00 0.00 0.00 2.01
5174 7431 9.617975 GAAAATGAGGATGAAGAACTTGTTAAG 57.382 33.333 0.00 0.00 0.00 1.85
5175 7432 8.697507 AAATGAGGATGAAGAACTTGTTAAGT 57.302 30.769 0.00 0.00 45.46 2.24
5176 7433 7.913674 ATGAGGATGAAGAACTTGTTAAGTC 57.086 36.000 0.00 0.00 41.91 3.01
5177 7434 7.067496 TGAGGATGAAGAACTTGTTAAGTCT 57.933 36.000 0.00 0.00 41.91 3.24
5178 7435 6.931281 TGAGGATGAAGAACTTGTTAAGTCTG 59.069 38.462 0.00 0.00 41.91 3.51
5179 7436 5.703130 AGGATGAAGAACTTGTTAAGTCTGC 59.297 40.000 0.00 0.00 41.91 4.26
5180 7437 5.389935 GGATGAAGAACTTGTTAAGTCTGCG 60.390 44.000 0.00 0.00 41.91 5.18
5181 7438 3.247648 TGAAGAACTTGTTAAGTCTGCGC 59.752 43.478 0.00 0.00 41.91 6.09
5182 7439 3.113260 AGAACTTGTTAAGTCTGCGCT 57.887 42.857 9.73 0.00 41.91 5.92
5183 7440 4.252971 AGAACTTGTTAAGTCTGCGCTA 57.747 40.909 9.73 0.00 41.91 4.26
5184 7441 3.988517 AGAACTTGTTAAGTCTGCGCTAC 59.011 43.478 9.73 7.21 41.91 3.58
5185 7442 2.685100 ACTTGTTAAGTCTGCGCTACC 58.315 47.619 9.73 0.00 37.02 3.18
5186 7443 2.036733 ACTTGTTAAGTCTGCGCTACCA 59.963 45.455 9.73 0.00 37.02 3.25
5187 7444 3.262420 CTTGTTAAGTCTGCGCTACCAT 58.738 45.455 9.73 1.97 0.00 3.55
5188 7445 2.616960 TGTTAAGTCTGCGCTACCATG 58.383 47.619 9.73 0.00 0.00 3.66
5189 7446 2.232696 TGTTAAGTCTGCGCTACCATGA 59.767 45.455 9.73 0.00 0.00 3.07
5190 7447 3.259064 GTTAAGTCTGCGCTACCATGAA 58.741 45.455 9.73 0.00 0.00 2.57
5191 7448 2.015736 AAGTCTGCGCTACCATGAAG 57.984 50.000 9.73 0.00 0.00 3.02
5192 7449 1.186200 AGTCTGCGCTACCATGAAGA 58.814 50.000 9.73 0.00 0.00 2.87
5193 7450 1.550524 AGTCTGCGCTACCATGAAGAA 59.449 47.619 9.73 0.00 0.00 2.52
5194 7451 2.169352 AGTCTGCGCTACCATGAAGAAT 59.831 45.455 9.73 0.00 0.00 2.40
5195 7452 2.541762 GTCTGCGCTACCATGAAGAATC 59.458 50.000 9.73 0.00 0.00 2.52
5196 7453 1.524355 CTGCGCTACCATGAAGAATCG 59.476 52.381 9.73 0.00 0.00 3.34
5197 7454 1.136110 TGCGCTACCATGAAGAATCGA 59.864 47.619 9.73 0.00 0.00 3.59
5198 7455 1.523095 GCGCTACCATGAAGAATCGAC 59.477 52.381 0.00 0.00 0.00 4.20
5199 7456 2.809446 CGCTACCATGAAGAATCGACA 58.191 47.619 0.00 0.00 0.00 4.35
5200 7457 2.535984 CGCTACCATGAAGAATCGACAC 59.464 50.000 0.00 0.00 0.00 3.67
5201 7458 2.866762 GCTACCATGAAGAATCGACACC 59.133 50.000 0.00 0.00 0.00 4.16
5202 7459 3.430929 GCTACCATGAAGAATCGACACCT 60.431 47.826 0.00 0.00 0.00 4.00
5203 7460 3.703001 ACCATGAAGAATCGACACCTT 57.297 42.857 0.00 0.00 0.00 3.50
5204 7461 4.021102 ACCATGAAGAATCGACACCTTT 57.979 40.909 0.00 0.00 0.00 3.11
5205 7462 4.003648 ACCATGAAGAATCGACACCTTTC 58.996 43.478 0.00 0.00 0.00 2.62
5206 7463 3.375299 CCATGAAGAATCGACACCTTTCC 59.625 47.826 0.00 0.00 0.00 3.13
5207 7464 3.762407 TGAAGAATCGACACCTTTCCA 57.238 42.857 0.00 0.00 0.00 3.53
5208 7465 4.286297 TGAAGAATCGACACCTTTCCAT 57.714 40.909 0.00 0.00 0.00 3.41
5209 7466 4.002982 TGAAGAATCGACACCTTTCCATG 58.997 43.478 0.00 0.00 0.00 3.66
5210 7467 2.359900 AGAATCGACACCTTTCCATGC 58.640 47.619 0.00 0.00 0.00 4.06
5211 7468 2.083774 GAATCGACACCTTTCCATGCA 58.916 47.619 0.00 0.00 0.00 3.96
5212 7469 2.198827 ATCGACACCTTTCCATGCAA 57.801 45.000 0.00 0.00 0.00 4.08
5213 7470 1.974265 TCGACACCTTTCCATGCAAA 58.026 45.000 0.00 0.00 0.00 3.68
5214 7471 2.513753 TCGACACCTTTCCATGCAAAT 58.486 42.857 0.00 0.00 0.00 2.32
5215 7472 3.680490 TCGACACCTTTCCATGCAAATA 58.320 40.909 0.00 0.00 0.00 1.40
5216 7473 3.438781 TCGACACCTTTCCATGCAAATAC 59.561 43.478 0.00 0.00 0.00 1.89
5217 7474 3.427503 CGACACCTTTCCATGCAAATACC 60.428 47.826 0.00 0.00 0.00 2.73
5218 7475 3.763897 GACACCTTTCCATGCAAATACCT 59.236 43.478 0.00 0.00 0.00 3.08
5219 7476 3.763897 ACACCTTTCCATGCAAATACCTC 59.236 43.478 0.00 0.00 0.00 3.85
5220 7477 3.016736 ACCTTTCCATGCAAATACCTCG 58.983 45.455 0.00 0.00 0.00 4.63
5221 7478 2.358898 CCTTTCCATGCAAATACCTCGG 59.641 50.000 0.00 0.00 0.00 4.63
5222 7479 2.051334 TTCCATGCAAATACCTCGGG 57.949 50.000 0.00 0.00 0.00 5.14
5223 7480 0.465460 TCCATGCAAATACCTCGGGC 60.465 55.000 0.00 0.00 0.00 6.13
5224 7481 0.466189 CCATGCAAATACCTCGGGCT 60.466 55.000 0.00 0.00 0.00 5.19
5225 7482 0.947244 CATGCAAATACCTCGGGCTC 59.053 55.000 0.00 0.00 0.00 4.70
5226 7483 0.179018 ATGCAAATACCTCGGGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
5227 7484 1.223487 GCAAATACCTCGGGCTCCA 59.777 57.895 0.00 0.00 0.00 3.86
5228 7485 0.815615 GCAAATACCTCGGGCTCCAG 60.816 60.000 0.00 0.00 0.00 3.86
5229 7486 0.815615 CAAATACCTCGGGCTCCAGC 60.816 60.000 0.00 0.00 41.14 4.85
5230 7487 0.983378 AAATACCTCGGGCTCCAGCT 60.983 55.000 0.00 0.00 41.70 4.24
5231 7488 0.983378 AATACCTCGGGCTCCAGCTT 60.983 55.000 0.00 0.00 41.70 3.74
5232 7489 0.105658 ATACCTCGGGCTCCAGCTTA 60.106 55.000 0.00 0.00 41.70 3.09
5233 7490 0.755698 TACCTCGGGCTCCAGCTTAG 60.756 60.000 0.00 0.00 41.70 2.18
5234 7491 2.107953 CTCGGGCTCCAGCTTAGC 59.892 66.667 8.99 8.99 41.70 3.09
5235 7492 2.683572 TCGGGCTCCAGCTTAGCA 60.684 61.111 17.36 0.00 41.93 3.49
5236 7493 2.037620 CTCGGGCTCCAGCTTAGCAT 62.038 60.000 17.36 0.00 41.93 3.79
5237 7494 1.596477 CGGGCTCCAGCTTAGCATC 60.596 63.158 17.36 9.30 41.93 3.91
5238 7495 1.528824 GGGCTCCAGCTTAGCATCA 59.471 57.895 17.36 0.00 41.93 3.07
5239 7496 0.534652 GGGCTCCAGCTTAGCATCAG 60.535 60.000 17.36 0.00 41.93 2.90
5240 7497 0.534652 GGCTCCAGCTTAGCATCAGG 60.535 60.000 17.36 2.81 41.93 3.86
5241 7498 1.165284 GCTCCAGCTTAGCATCAGGC 61.165 60.000 7.07 0.25 39.83 4.85
5242 7499 3.789391 GCTCCAGCTTAGCATCAGGCA 62.789 57.143 7.07 0.00 41.07 4.75
5260 7517 4.489679 GGCAACTCAAAAGGTTAGAGTG 57.510 45.455 0.00 0.00 41.45 3.51
5261 7518 3.253432 GGCAACTCAAAAGGTTAGAGTGG 59.747 47.826 0.00 0.00 41.45 4.00
5262 7519 4.489679 CAACTCAAAAGGTTAGAGTGGC 57.510 45.455 0.00 0.00 41.45 5.01
5263 7520 3.857157 ACTCAAAAGGTTAGAGTGGCA 57.143 42.857 0.00 0.00 40.83 4.92
5264 7521 3.744660 ACTCAAAAGGTTAGAGTGGCAG 58.255 45.455 0.00 0.00 40.83 4.85
5265 7522 2.485814 CTCAAAAGGTTAGAGTGGCAGC 59.514 50.000 0.00 0.00 0.00 5.25
5266 7523 1.541588 CAAAAGGTTAGAGTGGCAGCC 59.458 52.381 3.66 3.66 0.00 4.85
5267 7524 0.771127 AAAGGTTAGAGTGGCAGCCA 59.229 50.000 11.22 11.22 0.00 4.75
5268 7525 0.771127 AAGGTTAGAGTGGCAGCCAA 59.229 50.000 18.28 0.00 34.18 4.52
5269 7526 0.995024 AGGTTAGAGTGGCAGCCAAT 59.005 50.000 18.28 17.11 34.18 3.16
5270 7527 1.355720 AGGTTAGAGTGGCAGCCAATT 59.644 47.619 18.28 7.69 34.18 2.32
5271 7528 1.474077 GGTTAGAGTGGCAGCCAATTG 59.526 52.381 18.28 0.00 34.18 2.32
5272 7529 2.162681 GTTAGAGTGGCAGCCAATTGT 58.837 47.619 18.28 9.40 34.18 2.71
5273 7530 2.558359 GTTAGAGTGGCAGCCAATTGTT 59.442 45.455 18.28 7.71 34.18 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.112122 AGACAACCTATATGATGCAAAGACAA 58.888 34.615 0.00 0.00 0.00 3.18
1 2 6.653020 AGACAACCTATATGATGCAAAGACA 58.347 36.000 0.00 0.00 0.00 3.41
2 3 7.710907 TGTAGACAACCTATATGATGCAAAGAC 59.289 37.037 0.00 0.00 0.00 3.01
3 4 7.791029 TGTAGACAACCTATATGATGCAAAGA 58.209 34.615 0.00 0.00 0.00 2.52
4 5 8.613060 ATGTAGACAACCTATATGATGCAAAG 57.387 34.615 0.00 0.00 29.43 2.77
5 6 9.710900 CTATGTAGACAACCTATATGATGCAAA 57.289 33.333 0.00 0.00 32.42 3.68
6 7 8.870116 ACTATGTAGACAACCTATATGATGCAA 58.130 33.333 0.00 0.00 32.42 4.08
7 8 8.422577 ACTATGTAGACAACCTATATGATGCA 57.577 34.615 0.00 0.00 32.42 3.96
8 9 9.144747 CAACTATGTAGACAACCTATATGATGC 57.855 37.037 0.00 0.00 32.42 3.91
9 10 9.144747 GCAACTATGTAGACAACCTATATGATG 57.855 37.037 0.00 0.00 32.42 3.07
10 11 8.870116 TGCAACTATGTAGACAACCTATATGAT 58.130 33.333 0.00 0.00 32.42 2.45
11 12 8.245195 TGCAACTATGTAGACAACCTATATGA 57.755 34.615 0.00 0.00 32.42 2.15
15 16 9.094578 AGATATGCAACTATGTAGACAACCTAT 57.905 33.333 0.00 0.00 0.00 2.57
16 17 8.478775 AGATATGCAACTATGTAGACAACCTA 57.521 34.615 0.00 0.00 0.00 3.08
17 18 7.366847 AGATATGCAACTATGTAGACAACCT 57.633 36.000 0.00 0.00 0.00 3.50
18 19 8.577296 TCTAGATATGCAACTATGTAGACAACC 58.423 37.037 9.15 0.00 32.18 3.77
19 20 9.400638 GTCTAGATATGCAACTATGTAGACAAC 57.599 37.037 25.36 10.51 45.41 3.32
22 23 9.400638 GTTGTCTAGATATGCAACTATGTAGAC 57.599 37.037 24.42 24.42 45.83 2.59
23 24 8.577296 GGTTGTCTAGATATGCAACTATGTAGA 58.423 37.037 18.23 9.15 40.49 2.59
24 25 8.580720 AGGTTGTCTAGATATGCAACTATGTAG 58.419 37.037 18.23 0.00 40.49 2.74
25 26 8.478775 AGGTTGTCTAGATATGCAACTATGTA 57.521 34.615 18.23 0.00 40.49 2.29
26 27 7.366847 AGGTTGTCTAGATATGCAACTATGT 57.633 36.000 18.23 0.00 40.49 2.29
27 28 9.935241 AATAGGTTGTCTAGATATGCAACTATG 57.065 33.333 18.23 0.00 40.49 2.23
30 31 9.113838 CAAAATAGGTTGTCTAGATATGCAACT 57.886 33.333 18.23 10.35 40.49 3.16
31 32 8.893727 ACAAAATAGGTTGTCTAGATATGCAAC 58.106 33.333 13.07 13.07 37.10 4.17
32 33 9.461312 AACAAAATAGGTTGTCTAGATATGCAA 57.539 29.630 0.00 0.00 40.86 4.08
33 34 8.892723 CAACAAAATAGGTTGTCTAGATATGCA 58.107 33.333 0.00 0.00 40.86 3.96
34 35 7.857885 GCAACAAAATAGGTTGTCTAGATATGC 59.142 37.037 0.00 0.00 45.64 3.14
35 36 8.892723 TGCAACAAAATAGGTTGTCTAGATATG 58.107 33.333 0.00 0.00 45.64 1.78
36 37 9.461312 TTGCAACAAAATAGGTTGTCTAGATAT 57.539 29.630 0.00 0.00 45.64 1.63
37 38 8.856153 TTGCAACAAAATAGGTTGTCTAGATA 57.144 30.769 0.00 0.00 45.64 1.98
38 39 7.094205 CCTTGCAACAAAATAGGTTGTCTAGAT 60.094 37.037 0.00 0.00 45.64 1.98
39 40 6.206634 CCTTGCAACAAAATAGGTTGTCTAGA 59.793 38.462 0.00 0.00 45.64 2.43
40 41 6.016276 ACCTTGCAACAAAATAGGTTGTCTAG 60.016 38.462 0.00 5.94 45.64 2.43
41 42 5.830991 ACCTTGCAACAAAATAGGTTGTCTA 59.169 36.000 0.00 0.00 45.64 2.59
42 43 4.649218 ACCTTGCAACAAAATAGGTTGTCT 59.351 37.500 0.00 0.00 45.64 3.41
43 44 4.944048 ACCTTGCAACAAAATAGGTTGTC 58.056 39.130 0.00 1.31 45.64 3.18
44 45 5.351948 AACCTTGCAACAAAATAGGTTGT 57.648 34.783 14.44 0.00 45.04 3.32
45 46 7.778470 TTAAACCTTGCAACAAAATAGGTTG 57.222 32.000 15.61 0.00 45.79 3.77
47 48 8.835439 CAATTTAAACCTTGCAACAAAATAGGT 58.165 29.630 0.00 0.00 40.84 3.08
48 49 8.835439 ACAATTTAAACCTTGCAACAAAATAGG 58.165 29.630 0.00 0.00 0.00 2.57
54 55 9.436957 TCTTTAACAATTTAAACCTTGCAACAA 57.563 25.926 0.00 0.00 34.21 2.83
55 56 9.436957 TTCTTTAACAATTTAAACCTTGCAACA 57.563 25.926 0.00 0.00 34.21 3.33
59 60 9.433317 GCTTTTCTTTAACAATTTAAACCTTGC 57.567 29.630 2.18 0.00 34.21 4.01
78 79 8.826710 GGCAACTAACAATTTTTAAGCTTTTCT 58.173 29.630 3.20 0.00 0.00 2.52
79 80 8.987599 GGCAACTAACAATTTTTAAGCTTTTC 57.012 30.769 3.20 0.00 0.00 2.29
112 113 2.365105 TTGACTAGAGGGCGGGGG 60.365 66.667 0.00 0.00 0.00 5.40
113 114 2.732619 GGTTGACTAGAGGGCGGGG 61.733 68.421 0.00 0.00 0.00 5.73
114 115 1.338136 ATGGTTGACTAGAGGGCGGG 61.338 60.000 0.00 0.00 0.00 6.13
115 116 1.410004 TATGGTTGACTAGAGGGCGG 58.590 55.000 0.00 0.00 0.00 6.13
116 117 2.351835 CGATATGGTTGACTAGAGGGCG 60.352 54.545 0.00 0.00 0.00 6.13
117 118 2.891580 TCGATATGGTTGACTAGAGGGC 59.108 50.000 0.00 0.00 0.00 5.19
118 119 4.158764 GGATCGATATGGTTGACTAGAGGG 59.841 50.000 0.00 0.00 0.00 4.30
119 120 5.013547 AGGATCGATATGGTTGACTAGAGG 58.986 45.833 0.00 0.00 0.00 3.69
120 121 6.582677 AAGGATCGATATGGTTGACTAGAG 57.417 41.667 0.00 0.00 0.00 2.43
121 122 6.549736 TGAAAGGATCGATATGGTTGACTAGA 59.450 38.462 0.00 0.00 0.00 2.43
122 123 6.749139 TGAAAGGATCGATATGGTTGACTAG 58.251 40.000 0.00 0.00 0.00 2.57
123 124 6.724893 TGAAAGGATCGATATGGTTGACTA 57.275 37.500 0.00 0.00 0.00 2.59
124 125 5.605534 CTGAAAGGATCGATATGGTTGACT 58.394 41.667 0.00 0.00 0.00 3.41
125 126 5.914085 CTGAAAGGATCGATATGGTTGAC 57.086 43.478 0.00 0.00 0.00 3.18
212 213 3.980646 TTCAGGACCGTCATGTTTTTG 57.019 42.857 12.62 0.00 29.15 2.44
276 277 7.337689 ACGTAGGGAGTAAGTTTTTCTTTTGTT 59.662 33.333 0.00 0.00 37.56 2.83
319 322 8.542497 TTTAGCACAAAGACGTACTAAATCAT 57.458 30.769 0.00 0.00 32.35 2.45
364 367 8.907685 GCTCTCATCGTTCTATATTAGTTGTTC 58.092 37.037 0.00 0.00 0.00 3.18
502 508 7.857389 CACATGAGTTCATTTACATAATTCGGG 59.143 37.037 0.00 0.00 33.61 5.14
518 524 3.732721 GCTTTGCTGAAACACATGAGTTC 59.267 43.478 9.04 5.13 0.00 3.01
523 529 3.188492 TGTTGCTTTGCTGAAACACATG 58.812 40.909 0.00 0.00 0.00 3.21
621 639 7.863375 ACTAAGATCGATTTATTGTCTCTTCCG 59.137 37.037 0.00 0.00 0.00 4.30
802 2716 6.844097 TTGTTTGGGGTATGGAGTTAATTC 57.156 37.500 0.00 0.00 0.00 2.17
803 2717 7.446769 GTTTTGTTTGGGGTATGGAGTTAATT 58.553 34.615 0.00 0.00 0.00 1.40
804 2718 6.014070 GGTTTTGTTTGGGGTATGGAGTTAAT 60.014 38.462 0.00 0.00 0.00 1.40
817 2760 3.196685 TCCTTCTTGTGGTTTTGTTTGGG 59.803 43.478 0.00 0.00 0.00 4.12
837 2780 4.585581 GGGGAGATAGTGAGAGTTTACTCC 59.414 50.000 6.28 0.00 43.88 3.85
898 2841 0.328258 ACGGGAAGGGGAAAGTGATG 59.672 55.000 0.00 0.00 0.00 3.07
953 2909 3.782443 GGTGGGCTACCGGGTCTG 61.782 72.222 6.32 0.00 40.26 3.51
1152 3116 3.481999 GTTTCCGGGCGGGGGATA 61.482 66.667 11.55 0.00 36.01 2.59
1344 3308 0.109039 GCTCGAGCTCGGAGAAGTTT 60.109 55.000 33.98 0.00 40.29 2.66
1866 3830 4.954092 AGCAAGCTCAATTACAGCTAAC 57.046 40.909 10.70 6.96 46.96 2.34
1910 3874 0.319813 GTTGCATTGTCCTTGTGCCC 60.320 55.000 0.00 0.00 38.06 5.36
2002 3966 1.207593 CACAAGCTTGCGTGCCTAC 59.792 57.895 26.27 0.00 0.00 3.18
2015 3979 7.648908 TGAGCAAGTGATTCAAATAAACACAAG 59.351 33.333 0.00 0.00 34.47 3.16
2359 4337 6.491714 TCCCATTTCTCACATTTTGGAAAA 57.508 33.333 0.00 0.00 31.92 2.29
2579 4557 2.914059 AGGAACCGAATTTACCATCCG 58.086 47.619 0.00 0.00 0.00 4.18
2593 4571 8.129211 CCGAATAAAATCTTTGTCATAGGAACC 58.871 37.037 0.00 0.00 0.00 3.62
2753 4731 2.093973 CGGAAGAGAGGTTGCATACACT 60.094 50.000 0.00 0.00 0.00 3.55
2855 4833 6.096001 AGAGAATGCCGATAAAAAGCTGAATT 59.904 34.615 0.00 0.00 0.00 2.17
3060 5038 5.356751 TGAGTGAGCAAACACACTAAAATGT 59.643 36.000 0.00 0.00 46.12 2.71
3061 5039 5.820131 TGAGTGAGCAAACACACTAAAATG 58.180 37.500 0.00 0.00 46.12 2.32
3120 5098 8.616076 CCCTCTGTTCACAAATATAAGATGTTC 58.384 37.037 0.00 0.00 0.00 3.18
3184 5162 7.124573 AGACCAAACTGTAGCATATCATACA 57.875 36.000 0.00 0.00 0.00 2.29
3186 5164 6.923508 CGAAGACCAAACTGTAGCATATCATA 59.076 38.462 0.00 0.00 0.00 2.15
3478 5456 4.318332 CACCTGCACAGAAATAAGAGTGA 58.682 43.478 0.00 0.00 33.99 3.41
3721 5700 2.280797 GGTGCCTGCGTTGTGAGA 60.281 61.111 0.00 0.00 0.00 3.27
3734 5713 3.455469 GGCCATTCCTGCAGGTGC 61.455 66.667 31.58 26.11 42.50 5.01
3838 5817 7.554959 AAAGATCTTACCCTTAGTGACTGAA 57.445 36.000 8.75 0.00 0.00 3.02
3869 5848 4.527157 GATGCGCTGCAGTTCGGC 62.527 66.667 16.64 14.01 43.65 5.54
3897 5876 9.512588 GGGTCAGATGATGATGATACTTTATTT 57.487 33.333 0.00 0.00 40.92 1.40
3898 5877 8.888419 AGGGTCAGATGATGATGATACTTTATT 58.112 33.333 0.00 0.00 40.92 1.40
3901 5880 6.328410 TCAGGGTCAGATGATGATGATACTTT 59.672 38.462 0.00 0.00 40.92 2.66
3902 5881 5.842874 TCAGGGTCAGATGATGATGATACTT 59.157 40.000 0.00 0.00 40.92 2.24
3903 5882 5.400870 TCAGGGTCAGATGATGATGATACT 58.599 41.667 0.00 0.00 40.92 2.12
3904 5883 5.735285 TCAGGGTCAGATGATGATGATAC 57.265 43.478 0.00 0.00 40.92 2.24
3905 5884 6.070366 GGATTCAGGGTCAGATGATGATGATA 60.070 42.308 0.00 0.00 40.92 2.15
3906 5885 5.280573 GGATTCAGGGTCAGATGATGATGAT 60.281 44.000 0.00 0.00 40.92 2.45
3907 5886 4.041321 GGATTCAGGGTCAGATGATGATGA 59.959 45.833 0.00 0.00 40.92 2.92
3908 5887 4.202430 TGGATTCAGGGTCAGATGATGATG 60.202 45.833 0.00 0.00 40.92 3.07
3909 5888 3.978672 TGGATTCAGGGTCAGATGATGAT 59.021 43.478 0.00 0.00 40.92 2.45
3910 5889 3.387012 TGGATTCAGGGTCAGATGATGA 58.613 45.455 0.00 0.00 34.79 2.92
3911 5890 3.390311 TCTGGATTCAGGGTCAGATGATG 59.610 47.826 0.00 0.00 41.23 3.07
3912 5891 3.662078 TCTGGATTCAGGGTCAGATGAT 58.338 45.455 0.00 0.00 41.23 2.45
3913 5892 3.120468 TCTGGATTCAGGGTCAGATGA 57.880 47.619 0.00 0.00 41.23 2.92
3914 5893 3.453717 TCTTCTGGATTCAGGGTCAGATG 59.546 47.826 0.00 0.00 41.23 2.90
3915 5894 3.729108 TCTTCTGGATTCAGGGTCAGAT 58.271 45.455 0.00 0.00 41.23 2.90
3916 5895 3.190383 TCTTCTGGATTCAGGGTCAGA 57.810 47.619 0.00 0.00 41.23 3.27
3917 5896 3.988976 TTCTTCTGGATTCAGGGTCAG 57.011 47.619 0.00 0.00 41.23 3.51
3918 5897 4.722526 TTTTCTTCTGGATTCAGGGTCA 57.277 40.909 0.00 0.00 41.23 4.02
3942 5921 9.726652 AGGGTCAGATGATGATATATTGATACT 57.273 33.333 0.00 0.00 40.92 2.12
3943 5922 9.761504 CAGGGTCAGATGATGATATATTGATAC 57.238 37.037 0.00 0.00 40.92 2.24
4020 6001 0.948678 GCCGTTAGACACCAGCAAAA 59.051 50.000 0.00 0.00 0.00 2.44
4126 6109 0.953471 TGTGAATGTACTGCACCGGC 60.953 55.000 0.00 0.00 41.68 6.13
4165 6148 1.301401 GTAGTTGTCCACGCAGCCA 60.301 57.895 0.00 0.00 0.00 4.75
4291 6274 0.250467 GGTTGCTCTGGTGAAGCAGA 60.250 55.000 11.43 11.43 39.85 4.26
4526 6511 3.731867 GCAGCTGATAAACATCAAACCCG 60.732 47.826 20.43 0.00 0.00 5.28
4537 6522 2.573462 AGGAGGTGAAGCAGCTGATAAA 59.427 45.455 20.43 0.00 42.53 1.40
4577 6562 2.358898 CCCGTGATTCATCCATCCAAAC 59.641 50.000 0.00 0.00 0.00 2.93
4607 6646 1.461512 TGTACATTACACGCGGCAAAG 59.538 47.619 12.47 0.41 32.89 2.77
4628 6667 2.941064 GAGTACAAAATTACTCGCCCCC 59.059 50.000 0.00 0.00 38.89 5.40
4708 6755 5.850557 ACAGAACATGACACCAAATTCAA 57.149 34.783 0.00 0.00 0.00 2.69
4713 6760 4.102524 AGTCCTACAGAACATGACACCAAA 59.897 41.667 0.00 0.00 0.00 3.28
4803 6852 5.105310 ACATCAGTAGTTGGGTACATGTCTC 60.105 44.000 0.00 0.00 0.00 3.36
4836 6885 7.148137 ACGAAACAAGAACAAGAACCATAAACT 60.148 33.333 0.00 0.00 0.00 2.66
4843 6892 6.363896 TCAAAAACGAAACAAGAACAAGAACC 59.636 34.615 0.00 0.00 0.00 3.62
4859 6908 6.019156 GCATGGATTTGTTTCTTCAAAAACGA 60.019 34.615 0.00 0.00 41.12 3.85
4860 6909 6.018832 AGCATGGATTTGTTTCTTCAAAAACG 60.019 34.615 0.00 0.00 41.12 3.60
4884 6934 4.440112 GGTCAAAGTTTGAACCCACTTGAG 60.440 45.833 20.94 0.00 41.54 3.02
4885 6935 3.445805 GGTCAAAGTTTGAACCCACTTGA 59.554 43.478 20.94 0.00 41.54 3.02
4922 6972 2.866156 CGAGACGCACATGGTATCAAAT 59.134 45.455 0.00 0.00 0.00 2.32
4923 6973 2.267426 CGAGACGCACATGGTATCAAA 58.733 47.619 0.00 0.00 0.00 2.69
4924 6974 1.921243 CGAGACGCACATGGTATCAA 58.079 50.000 0.00 0.00 0.00 2.57
4937 6987 1.721664 TATCCAACCTCGGCGAGACG 61.722 60.000 36.47 23.19 0.00 4.18
5027 7284 6.057533 TGATTGATGAGAACATATGGTGGTC 58.942 40.000 7.80 0.16 45.27 4.02
5120 7377 1.009078 TCGAGATTGCCGCAGATTTG 58.991 50.000 0.00 0.00 0.00 2.32
5121 7378 1.869767 GATCGAGATTGCCGCAGATTT 59.130 47.619 0.00 0.00 0.00 2.17
5122 7379 1.202568 TGATCGAGATTGCCGCAGATT 60.203 47.619 0.00 0.00 0.00 2.40
5123 7380 0.390492 TGATCGAGATTGCCGCAGAT 59.610 50.000 0.00 0.00 0.00 2.90
5124 7381 0.249197 CTGATCGAGATTGCCGCAGA 60.249 55.000 0.00 0.00 0.00 4.26
5125 7382 0.249197 TCTGATCGAGATTGCCGCAG 60.249 55.000 0.00 0.00 0.00 5.18
5126 7383 0.249197 CTCTGATCGAGATTGCCGCA 60.249 55.000 8.35 0.00 42.62 5.69
5127 7384 1.555741 GCTCTGATCGAGATTGCCGC 61.556 60.000 15.71 4.09 42.62 6.53
5128 7385 0.249197 TGCTCTGATCGAGATTGCCG 60.249 55.000 15.71 0.00 42.62 5.69
5129 7386 1.068281 TCTGCTCTGATCGAGATTGCC 59.932 52.381 15.71 2.11 42.62 4.52
5130 7387 2.505628 TCTGCTCTGATCGAGATTGC 57.494 50.000 15.71 8.37 42.62 3.56
5131 7388 5.522824 TCATTTTCTGCTCTGATCGAGATTG 59.477 40.000 15.71 6.98 42.62 2.67
5132 7389 5.668471 TCATTTTCTGCTCTGATCGAGATT 58.332 37.500 15.71 0.00 42.62 2.40
5133 7390 5.273674 TCATTTTCTGCTCTGATCGAGAT 57.726 39.130 15.71 0.00 42.62 2.75
5134 7391 4.441217 CCTCATTTTCTGCTCTGATCGAGA 60.441 45.833 15.71 6.70 42.62 4.04
5135 7392 3.803231 CCTCATTTTCTGCTCTGATCGAG 59.197 47.826 9.37 9.37 42.88 4.04
5136 7393 3.448660 TCCTCATTTTCTGCTCTGATCGA 59.551 43.478 0.00 0.00 0.00 3.59
5137 7394 3.790091 TCCTCATTTTCTGCTCTGATCG 58.210 45.455 0.00 0.00 0.00 3.69
5138 7395 5.366460 TCATCCTCATTTTCTGCTCTGATC 58.634 41.667 0.00 0.00 0.00 2.92
5139 7396 5.369409 TCATCCTCATTTTCTGCTCTGAT 57.631 39.130 0.00 0.00 0.00 2.90
5140 7397 4.831674 TCATCCTCATTTTCTGCTCTGA 57.168 40.909 0.00 0.00 0.00 3.27
5141 7398 5.183969 TCTTCATCCTCATTTTCTGCTCTG 58.816 41.667 0.00 0.00 0.00 3.35
5142 7399 5.432680 TCTTCATCCTCATTTTCTGCTCT 57.567 39.130 0.00 0.00 0.00 4.09
5143 7400 5.647225 AGTTCTTCATCCTCATTTTCTGCTC 59.353 40.000 0.00 0.00 0.00 4.26
5144 7401 5.568392 AGTTCTTCATCCTCATTTTCTGCT 58.432 37.500 0.00 0.00 0.00 4.24
5145 7402 5.893897 AGTTCTTCATCCTCATTTTCTGC 57.106 39.130 0.00 0.00 0.00 4.26
5146 7403 7.211966 ACAAGTTCTTCATCCTCATTTTCTG 57.788 36.000 0.00 0.00 0.00 3.02
5147 7404 7.830099 AACAAGTTCTTCATCCTCATTTTCT 57.170 32.000 0.00 0.00 0.00 2.52
5148 7405 9.617975 CTTAACAAGTTCTTCATCCTCATTTTC 57.382 33.333 0.00 0.00 0.00 2.29
5149 7406 9.136323 ACTTAACAAGTTCTTCATCCTCATTTT 57.864 29.630 0.00 0.00 39.04 1.82
5150 7407 8.697507 ACTTAACAAGTTCTTCATCCTCATTT 57.302 30.769 0.00 0.00 39.04 2.32
5151 7408 8.160106 AGACTTAACAAGTTCTTCATCCTCATT 58.840 33.333 0.00 0.00 43.03 2.57
5152 7409 7.605691 CAGACTTAACAAGTTCTTCATCCTCAT 59.394 37.037 0.00 0.00 43.03 2.90
5153 7410 6.931281 CAGACTTAACAAGTTCTTCATCCTCA 59.069 38.462 0.00 0.00 43.03 3.86
5154 7411 6.128418 GCAGACTTAACAAGTTCTTCATCCTC 60.128 42.308 0.00 0.00 43.03 3.71
5155 7412 5.703130 GCAGACTTAACAAGTTCTTCATCCT 59.297 40.000 0.00 0.00 43.03 3.24
5156 7413 5.389935 CGCAGACTTAACAAGTTCTTCATCC 60.390 44.000 0.00 0.00 43.03 3.51
5157 7414 5.612865 CGCAGACTTAACAAGTTCTTCATC 58.387 41.667 0.00 0.00 43.03 2.92
5158 7415 4.083802 GCGCAGACTTAACAAGTTCTTCAT 60.084 41.667 0.30 0.00 43.03 2.57
5159 7416 3.247648 GCGCAGACTTAACAAGTTCTTCA 59.752 43.478 0.30 0.00 43.03 3.02
5160 7417 3.495001 AGCGCAGACTTAACAAGTTCTTC 59.505 43.478 11.47 0.00 43.03 2.87
5161 7418 3.467803 AGCGCAGACTTAACAAGTTCTT 58.532 40.909 11.47 0.00 43.03 2.52
5162 7419 3.113260 AGCGCAGACTTAACAAGTTCT 57.887 42.857 11.47 0.00 43.03 3.01
5163 7420 3.123116 GGTAGCGCAGACTTAACAAGTTC 59.877 47.826 11.47 0.00 43.03 3.01
5164 7421 3.064931 GGTAGCGCAGACTTAACAAGTT 58.935 45.455 11.47 0.00 43.03 2.66
5165 7422 2.036733 TGGTAGCGCAGACTTAACAAGT 59.963 45.455 11.47 0.00 46.38 3.16
5166 7423 2.683968 TGGTAGCGCAGACTTAACAAG 58.316 47.619 11.47 0.00 0.00 3.16
5167 7424 2.823924 TGGTAGCGCAGACTTAACAA 57.176 45.000 11.47 0.00 0.00 2.83
5168 7425 2.232696 TCATGGTAGCGCAGACTTAACA 59.767 45.455 11.47 1.06 0.00 2.41
5169 7426 2.888594 TCATGGTAGCGCAGACTTAAC 58.111 47.619 11.47 0.00 0.00 2.01
5170 7427 3.194755 TCTTCATGGTAGCGCAGACTTAA 59.805 43.478 11.47 0.00 0.00 1.85
5171 7428 2.758423 TCTTCATGGTAGCGCAGACTTA 59.242 45.455 11.47 1.36 0.00 2.24
5172 7429 1.550524 TCTTCATGGTAGCGCAGACTT 59.449 47.619 11.47 0.00 0.00 3.01
5173 7430 1.186200 TCTTCATGGTAGCGCAGACT 58.814 50.000 11.47 0.00 0.00 3.24
5174 7431 2.010145 TTCTTCATGGTAGCGCAGAC 57.990 50.000 11.47 7.11 0.00 3.51
5175 7432 2.799562 CGATTCTTCATGGTAGCGCAGA 60.800 50.000 11.47 0.00 0.00 4.26
5176 7433 1.524355 CGATTCTTCATGGTAGCGCAG 59.476 52.381 11.47 0.00 0.00 5.18
5177 7434 1.136110 TCGATTCTTCATGGTAGCGCA 59.864 47.619 11.47 0.00 0.00 6.09
5178 7435 1.523095 GTCGATTCTTCATGGTAGCGC 59.477 52.381 0.00 0.00 0.00 5.92
5179 7436 2.535984 GTGTCGATTCTTCATGGTAGCG 59.464 50.000 0.00 0.00 0.00 4.26
5180 7437 2.866762 GGTGTCGATTCTTCATGGTAGC 59.133 50.000 0.00 0.00 0.00 3.58
5181 7438 4.392921 AGGTGTCGATTCTTCATGGTAG 57.607 45.455 0.00 0.00 0.00 3.18
5182 7439 4.819105 AAGGTGTCGATTCTTCATGGTA 57.181 40.909 0.00 0.00 0.00 3.25
5183 7440 3.703001 AAGGTGTCGATTCTTCATGGT 57.297 42.857 0.00 0.00 0.00 3.55
5184 7441 3.375299 GGAAAGGTGTCGATTCTTCATGG 59.625 47.826 0.00 0.00 0.00 3.66
5185 7442 4.002982 TGGAAAGGTGTCGATTCTTCATG 58.997 43.478 0.00 0.00 0.00 3.07
5186 7443 4.286297 TGGAAAGGTGTCGATTCTTCAT 57.714 40.909 0.00 0.00 0.00 2.57
5187 7444 3.762407 TGGAAAGGTGTCGATTCTTCA 57.238 42.857 0.00 0.00 0.00 3.02
5188 7445 3.181506 GCATGGAAAGGTGTCGATTCTTC 60.182 47.826 0.00 0.00 0.00 2.87
5189 7446 2.749621 GCATGGAAAGGTGTCGATTCTT 59.250 45.455 0.00 0.00 0.00 2.52
5190 7447 2.290260 TGCATGGAAAGGTGTCGATTCT 60.290 45.455 0.00 0.00 0.00 2.40
5191 7448 2.083774 TGCATGGAAAGGTGTCGATTC 58.916 47.619 0.00 0.00 0.00 2.52
5192 7449 2.198827 TGCATGGAAAGGTGTCGATT 57.801 45.000 0.00 0.00 0.00 3.34
5193 7450 2.198827 TTGCATGGAAAGGTGTCGAT 57.801 45.000 0.00 0.00 0.00 3.59
5194 7451 1.974265 TTTGCATGGAAAGGTGTCGA 58.026 45.000 8.47 0.00 0.00 4.20
5195 7452 3.427503 GGTATTTGCATGGAAAGGTGTCG 60.428 47.826 17.67 0.00 0.00 4.35
5196 7453 3.763897 AGGTATTTGCATGGAAAGGTGTC 59.236 43.478 17.67 6.00 0.00 3.67
5197 7454 3.763897 GAGGTATTTGCATGGAAAGGTGT 59.236 43.478 17.67 3.82 0.00 4.16
5198 7455 3.181497 CGAGGTATTTGCATGGAAAGGTG 60.181 47.826 17.67 1.48 0.00 4.00
5199 7456 3.016736 CGAGGTATTTGCATGGAAAGGT 58.983 45.455 17.67 4.88 0.00 3.50
5200 7457 2.358898 CCGAGGTATTTGCATGGAAAGG 59.641 50.000 17.67 8.52 0.00 3.11
5201 7458 2.358898 CCCGAGGTATTTGCATGGAAAG 59.641 50.000 17.67 3.27 0.00 2.62
5202 7459 2.374184 CCCGAGGTATTTGCATGGAAA 58.626 47.619 15.13 15.13 0.00 3.13
5203 7460 2.021723 GCCCGAGGTATTTGCATGGAA 61.022 52.381 0.00 0.00 0.00 3.53
5204 7461 0.465460 GCCCGAGGTATTTGCATGGA 60.465 55.000 0.00 0.00 0.00 3.41
5205 7462 0.466189 AGCCCGAGGTATTTGCATGG 60.466 55.000 0.00 0.00 0.00 3.66
5206 7463 0.947244 GAGCCCGAGGTATTTGCATG 59.053 55.000 0.00 0.00 0.00 4.06
5207 7464 0.179018 GGAGCCCGAGGTATTTGCAT 60.179 55.000 0.00 0.00 0.00 3.96
5208 7465 1.223487 GGAGCCCGAGGTATTTGCA 59.777 57.895 0.00 0.00 0.00 4.08
5209 7466 0.815615 CTGGAGCCCGAGGTATTTGC 60.816 60.000 0.00 0.00 0.00 3.68
5210 7467 0.815615 GCTGGAGCCCGAGGTATTTG 60.816 60.000 0.00 0.00 34.31 2.32
5211 7468 0.983378 AGCTGGAGCCCGAGGTATTT 60.983 55.000 0.00 0.00 43.38 1.40
5212 7469 0.983378 AAGCTGGAGCCCGAGGTATT 60.983 55.000 0.00 0.00 43.38 1.89
5213 7470 0.105658 TAAGCTGGAGCCCGAGGTAT 60.106 55.000 0.00 0.00 43.38 2.73
5214 7471 0.755698 CTAAGCTGGAGCCCGAGGTA 60.756 60.000 0.00 0.00 43.38 3.08
5215 7472 2.038975 TAAGCTGGAGCCCGAGGT 59.961 61.111 0.00 0.00 43.38 3.85
5216 7473 2.818132 CTAAGCTGGAGCCCGAGG 59.182 66.667 0.00 0.00 43.38 4.63
5217 7474 2.037620 ATGCTAAGCTGGAGCCCGAG 62.038 60.000 16.19 0.00 43.38 4.63
5218 7475 2.032860 GATGCTAAGCTGGAGCCCGA 62.033 60.000 16.19 1.04 43.38 5.14
5219 7476 1.596477 GATGCTAAGCTGGAGCCCG 60.596 63.158 16.19 0.00 43.38 6.13
5220 7477 0.534652 CTGATGCTAAGCTGGAGCCC 60.535 60.000 16.19 9.82 43.38 5.19
5221 7478 0.534652 CCTGATGCTAAGCTGGAGCC 60.535 60.000 16.19 4.76 43.38 4.70
5222 7479 1.165284 GCCTGATGCTAAGCTGGAGC 61.165 60.000 12.87 12.87 40.53 4.70
5223 7480 0.179702 TGCCTGATGCTAAGCTGGAG 59.820 55.000 0.00 0.00 42.00 3.86
5224 7481 0.620030 TTGCCTGATGCTAAGCTGGA 59.380 50.000 0.00 0.00 42.00 3.86
5225 7482 0.737219 GTTGCCTGATGCTAAGCTGG 59.263 55.000 0.00 0.00 42.00 4.85
5226 7483 1.669779 GAGTTGCCTGATGCTAAGCTG 59.330 52.381 0.00 0.00 42.00 4.24
5227 7484 1.280133 TGAGTTGCCTGATGCTAAGCT 59.720 47.619 0.00 0.00 42.00 3.74
5228 7485 1.742761 TGAGTTGCCTGATGCTAAGC 58.257 50.000 0.00 0.00 42.00 3.09
5229 7486 4.380233 CCTTTTGAGTTGCCTGATGCTAAG 60.380 45.833 0.00 0.00 42.00 2.18
5230 7487 3.507233 CCTTTTGAGTTGCCTGATGCTAA 59.493 43.478 0.00 0.00 42.00 3.09
5231 7488 3.084039 CCTTTTGAGTTGCCTGATGCTA 58.916 45.455 0.00 0.00 42.00 3.49
5232 7489 1.891150 CCTTTTGAGTTGCCTGATGCT 59.109 47.619 0.00 0.00 42.00 3.79
5233 7490 1.615392 ACCTTTTGAGTTGCCTGATGC 59.385 47.619 0.00 0.00 41.77 3.91
5234 7491 4.761739 TCTAACCTTTTGAGTTGCCTGATG 59.238 41.667 0.00 0.00 0.00 3.07
5235 7492 4.985538 TCTAACCTTTTGAGTTGCCTGAT 58.014 39.130 0.00 0.00 0.00 2.90
5236 7493 4.141482 ACTCTAACCTTTTGAGTTGCCTGA 60.141 41.667 0.00 0.00 37.76 3.86
5237 7494 4.023707 CACTCTAACCTTTTGAGTTGCCTG 60.024 45.833 0.98 0.00 38.80 4.85
5238 7495 4.137543 CACTCTAACCTTTTGAGTTGCCT 58.862 43.478 0.98 0.00 38.80 4.75
5239 7496 3.253432 CCACTCTAACCTTTTGAGTTGCC 59.747 47.826 0.98 0.00 38.80 4.52
5240 7497 3.304726 GCCACTCTAACCTTTTGAGTTGC 60.305 47.826 9.57 9.57 40.47 4.17
5241 7498 3.882888 TGCCACTCTAACCTTTTGAGTTG 59.117 43.478 0.98 0.21 38.80 3.16
5242 7499 4.137543 CTGCCACTCTAACCTTTTGAGTT 58.862 43.478 0.98 0.00 38.80 3.01
5243 7500 3.744660 CTGCCACTCTAACCTTTTGAGT 58.255 45.455 0.00 0.00 41.15 3.41
5244 7501 2.485814 GCTGCCACTCTAACCTTTTGAG 59.514 50.000 0.00 0.00 0.00 3.02
5245 7502 2.504367 GCTGCCACTCTAACCTTTTGA 58.496 47.619 0.00 0.00 0.00 2.69
5246 7503 1.541588 GGCTGCCACTCTAACCTTTTG 59.458 52.381 15.17 0.00 0.00 2.44
5247 7504 1.144913 TGGCTGCCACTCTAACCTTTT 59.855 47.619 19.30 0.00 0.00 2.27
5248 7505 0.771127 TGGCTGCCACTCTAACCTTT 59.229 50.000 19.30 0.00 0.00 3.11
5249 7506 0.771127 TTGGCTGCCACTCTAACCTT 59.229 50.000 23.30 0.00 30.78 3.50
5250 7507 0.995024 ATTGGCTGCCACTCTAACCT 59.005 50.000 23.30 0.00 30.78 3.50
5251 7508 1.474077 CAATTGGCTGCCACTCTAACC 59.526 52.381 23.30 0.00 30.78 2.85
5252 7509 2.162681 ACAATTGGCTGCCACTCTAAC 58.837 47.619 23.30 0.00 30.78 2.34
5253 7510 2.584835 ACAATTGGCTGCCACTCTAA 57.415 45.000 23.30 6.68 30.78 2.10
5254 7511 2.584835 AACAATTGGCTGCCACTCTA 57.415 45.000 23.30 7.13 30.78 2.43
5255 7512 3.444850 AACAATTGGCTGCCACTCT 57.555 47.368 23.30 6.30 30.78 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.