Multiple sequence alignment - TraesCS5B01G039500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G039500 chr5B 100.000 4535 0 0 1001 5535 44467975 44463441 0.000000e+00 8375.0
1 TraesCS5B01G039500 chr5B 100.000 546 0 0 1 546 44468975 44468430 0.000000e+00 1009.0
2 TraesCS5B01G039500 chr5B 96.319 163 5 1 3521 3683 498835555 498835394 3.290000e-67 267.0
3 TraesCS5B01G039500 chr5B 95.745 47 1 1 5227 5273 36187738 36187783 2.140000e-09 75.0
4 TraesCS5B01G039500 chr5D 96.769 2538 56 4 1001 3515 44701830 44699296 0.000000e+00 4209.0
5 TraesCS5B01G039500 chr5D 91.117 1970 141 15 1552 3512 87541734 87539790 0.000000e+00 2638.0
6 TraesCS5B01G039500 chr5D 90.495 1978 143 22 1552 3512 122061306 122059357 0.000000e+00 2569.0
7 TraesCS5B01G039500 chr5D 86.770 907 88 18 3671 4560 44632721 44631830 0.000000e+00 981.0
8 TraesCS5B01G039500 chr5D 95.777 592 22 1 3673 4261 44699294 44698703 0.000000e+00 952.0
9 TraesCS5B01G039500 chr5D 92.321 560 16 13 1 546 44702427 44701881 0.000000e+00 771.0
10 TraesCS5B01G039500 chr5D 87.474 479 39 9 3055 3516 44633194 44632720 2.940000e-147 532.0
11 TraesCS5B01G039500 chr5D 87.298 433 31 9 4762 5178 44698498 44698074 1.800000e-129 473.0
12 TraesCS5B01G039500 chr5D 84.073 383 45 14 4191 4560 44698877 44698498 6.820000e-94 355.0
13 TraesCS5B01G039500 chr5D 80.041 491 38 18 4774 5223 44622084 44621613 5.390000e-80 309.0
14 TraesCS5B01G039500 chr5D 92.500 200 10 3 4563 4760 530795033 530794837 1.170000e-71 281.0
15 TraesCS5B01G039500 chr5D 89.222 167 10 2 5267 5432 44621615 44621456 9.400000e-48 202.0
16 TraesCS5B01G039500 chr5D 89.634 164 9 2 5265 5427 44698046 44697890 9.400000e-48 202.0
17 TraesCS5B01G039500 chr5D 91.667 108 8 1 3673 3780 122059355 122059249 1.240000e-31 148.0
18 TraesCS5B01G039500 chr5D 81.481 162 21 8 4085 4242 44632208 44632052 2.090000e-24 124.0
19 TraesCS5B01G039500 chr5D 81.553 103 15 2 4940 5039 44624367 44624266 1.280000e-11 82.4
20 TraesCS5B01G039500 chr5D 90.566 53 3 1 5216 5268 74424247 74424297 9.950000e-08 69.4
21 TraesCS5B01G039500 chr5D 100.000 28 0 0 5195 5222 44698073 44698046 1.000000e-02 52.8
22 TraesCS5B01G039500 chr5A 90.642 2383 176 24 1147 3516 35196043 35193695 0.000000e+00 3121.0
23 TraesCS5B01G039500 chr5A 89.631 1977 163 16 1550 3512 80511652 80509704 0.000000e+00 2477.0
24 TraesCS5B01G039500 chr5A 90.018 1653 107 21 1874 3512 121720857 121719249 0.000000e+00 2085.0
25 TraesCS5B01G039500 chr5A 89.503 905 53 15 3671 4560 35193696 35192819 0.000000e+00 1107.0
26 TraesCS5B01G039500 chr5A 87.440 414 46 5 1552 1959 121721271 121720858 6.490000e-129 472.0
27 TraesCS5B01G039500 chr5A 84.340 447 38 9 4762 5179 35180786 35180343 5.160000e-110 409.0
28 TraesCS5B01G039500 chr5A 86.472 377 35 14 3891 4258 35184297 35183928 3.110000e-107 399.0
29 TraesCS5B01G039500 chr5A 92.632 190 10 3 4333 4522 35181024 35180839 2.540000e-68 270.0
30 TraesCS5B01G039500 chr5A 93.678 174 7 2 3503 3672 299096007 299095834 1.980000e-64 257.0
31 TraesCS5B01G039500 chr5A 87.611 226 20 1 4762 4979 35192819 35192594 7.120000e-64 255.0
32 TraesCS5B01G039500 chr5A 97.541 122 3 0 204 325 35197812 35197691 5.620000e-50 209.0
33 TraesCS5B01G039500 chr5A 87.879 165 12 2 5267 5430 35116163 35116006 2.630000e-43 187.0
34 TraesCS5B01G039500 chr5A 88.652 141 6 3 1001 1132 35197587 35197448 4.440000e-36 163.0
35 TraesCS5B01G039500 chr5A 92.661 109 7 1 4434 4541 35117041 35116933 7.420000e-34 156.0
36 TraesCS5B01G039500 chr5A 86.765 136 8 2 5298 5432 35180331 35180205 5.780000e-30 143.0
37 TraesCS5B01G039500 chr5A 84.173 139 4 4 5097 5223 35116293 35116161 9.740000e-23 119.0
38 TraesCS5B01G039500 chr5A 79.839 124 19 4 4940 5058 35119387 35119265 9.880000e-13 86.1
39 TraesCS5B01G039500 chr7B 93.144 1721 107 8 1802 3518 726155658 726153945 0.000000e+00 2514.0
40 TraesCS5B01G039500 chr7B 87.441 637 52 10 1147 1774 726156447 726155830 0.000000e+00 708.0
41 TraesCS5B01G039500 chr7B 86.888 572 62 10 3676 4238 726153944 726153377 3.640000e-176 628.0
42 TraesCS5B01G039500 chr7B 95.918 196 6 2 4562 4755 88283908 88283713 3.220000e-82 316.0
43 TraesCS5B01G039500 chr7B 95.025 201 8 2 4563 4761 554524156 554524356 1.160000e-81 315.0
44 TraesCS5B01G039500 chr7B 94.059 202 10 2 4563 4762 747183074 747182873 6.970000e-79 305.0
45 TraesCS5B01G039500 chr7D 91.456 1779 115 12 1770 3516 626378167 626376394 0.000000e+00 2409.0
46 TraesCS5B01G039500 chr7D 87.402 635 54 8 1147 1774 626378940 626378325 0.000000e+00 706.0
47 TraesCS5B01G039500 chr7D 88.408 578 54 11 3671 4239 626376395 626375822 0.000000e+00 684.0
48 TraesCS5B01G039500 chr7D 98.065 155 3 0 3521 3675 192936171 192936017 2.540000e-68 270.0
49 TraesCS5B01G039500 chr7D 86.192 239 23 9 1 238 626381988 626381759 3.310000e-62 250.0
50 TraesCS5B01G039500 chr7A 91.446 1777 117 18 1770 3516 721920503 721918732 0.000000e+00 2407.0
51 TraesCS5B01G039500 chr7A 89.535 430 34 9 3677 4097 721918728 721918301 8.160000e-148 534.0
52 TraesCS5B01G039500 chr7A 88.179 313 26 4 1148 1457 721921458 721921154 4.080000e-96 363.0
53 TraesCS5B01G039500 chr1B 94.979 478 19 2 4079 4554 53603412 53602938 0.000000e+00 745.0
54 TraesCS5B01G039500 chr1B 81.019 216 36 5 4783 4993 53602936 53602721 3.430000e-37 167.0
55 TraesCS5B01G039500 chr2B 96.447 197 5 2 4563 4757 569130983 569130787 1.920000e-84 324.0
56 TraesCS5B01G039500 chr2B 98.052 154 3 0 3521 3674 174794835 174794988 9.140000e-68 268.0
57 TraesCS5B01G039500 chr2B 90.686 204 13 3 4563 4760 556597414 556597211 3.290000e-67 267.0
58 TraesCS5B01G039500 chr4D 95.408 196 7 2 4563 4756 470124421 470124616 1.500000e-80 311.0
59 TraesCS5B01G039500 chr4D 98.052 154 3 0 3521 3674 75782204 75782051 9.140000e-68 268.0
60 TraesCS5B01G039500 chr4D 91.005 189 15 2 4569 4755 139293920 139294108 2.560000e-63 254.0
61 TraesCS5B01G039500 chr3D 94.330 194 9 2 4564 4755 254079389 254079196 4.190000e-76 296.0
62 TraesCS5B01G039500 chr3D 97.674 43 1 0 5227 5269 89144027 89143985 2.140000e-09 75.0
63 TraesCS5B01G039500 chr6D 98.065 155 3 0 3521 3675 392896988 392897142 2.540000e-68 270.0
64 TraesCS5B01G039500 chr6D 97.674 43 1 0 5227 5269 326981592 326981634 2.140000e-09 75.0
65 TraesCS5B01G039500 chr1D 98.065 155 3 0 3521 3675 238940367 238940213 2.540000e-68 270.0
66 TraesCS5B01G039500 chr2D 96.875 160 5 0 3521 3680 516708325 516708484 9.140000e-68 268.0
67 TraesCS5B01G039500 chr2D 95.349 43 2 0 5227 5269 548713068 548713026 9.950000e-08 69.4
68 TraesCS5B01G039500 chr2D 90.566 53 3 2 5227 5278 605638872 605638821 9.950000e-08 69.4
69 TraesCS5B01G039500 chr4A 95.294 170 5 3 3521 3687 362067924 362068093 3.290000e-67 267.0
70 TraesCS5B01G039500 chr6B 97.727 44 1 0 5227 5270 187829290 187829247 5.950000e-10 76.8
71 TraesCS5B01G039500 chr4B 97.674 43 1 0 5227 5269 485590981 485591023 2.140000e-09 75.0
72 TraesCS5B01G039500 chr4B 92.453 53 2 2 5218 5269 558788743 558788794 2.140000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G039500 chr5B 44463441 44468975 5534 True 4692.000000 8375 100.000000 1 5535 2 chr5B.!!$R2 5534
1 TraesCS5B01G039500 chr5D 87539790 87541734 1944 True 2638.000000 2638 91.117000 1552 3512 1 chr5D.!!$R1 1960
2 TraesCS5B01G039500 chr5D 122059249 122061306 2057 True 1358.500000 2569 91.081000 1552 3780 2 chr5D.!!$R6 2228
3 TraesCS5B01G039500 chr5D 44697890 44702427 4537 True 1002.114286 4209 92.267429 1 5427 7 chr5D.!!$R5 5426
4 TraesCS5B01G039500 chr5D 44631830 44633194 1364 True 545.666667 981 85.241667 3055 4560 3 chr5D.!!$R4 1505
5 TraesCS5B01G039500 chr5A 80509704 80511652 1948 True 2477.000000 2477 89.631000 1550 3512 1 chr5A.!!$R1 1962
6 TraesCS5B01G039500 chr5A 121719249 121721271 2022 True 1278.500000 2085 88.729000 1552 3512 2 chr5A.!!$R6 1960
7 TraesCS5B01G039500 chr5A 35192594 35197812 5218 True 971.000000 3121 90.789800 204 4979 5 chr5A.!!$R5 4775
8 TraesCS5B01G039500 chr5A 35180205 35184297 4092 True 305.250000 409 87.552250 3891 5432 4 chr5A.!!$R4 1541
9 TraesCS5B01G039500 chr7B 726153377 726156447 3070 True 1283.333333 2514 89.157667 1147 4238 3 chr7B.!!$R3 3091
10 TraesCS5B01G039500 chr7D 626375822 626381988 6166 True 1012.250000 2409 88.364500 1 4239 4 chr7D.!!$R2 4238
11 TraesCS5B01G039500 chr7A 721918301 721921458 3157 True 1101.333333 2407 89.720000 1148 4097 3 chr7A.!!$R1 2949
12 TraesCS5B01G039500 chr1B 53602721 53603412 691 True 456.000000 745 87.999000 4079 4993 2 chr1B.!!$R1 914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 1.203052 CGGAGGGAGTACTTTGCGTAA 59.797 52.381 0.00 0.00 0.00 3.18 F
1314 4755 1.334960 CCACACATTGTCGGAAGTTGC 60.335 52.381 0.00 0.00 0.00 4.17 F
2277 6168 0.968405 TGCCATCCCACTTTTGCTTC 59.032 50.000 0.00 0.00 0.00 3.86 F
3272 7241 0.469892 AGTTTTGGACCTGGGCCAAG 60.470 55.000 31.65 3.42 45.39 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 5853 1.414061 AACAGCACCAGTGAGCTCCT 61.414 55.000 12.15 5.01 39.50 3.69 R
2932 6831 0.878523 TCAACTTCTGCGTCAACCCG 60.879 55.000 0.00 0.00 0.00 5.28 R
3563 7562 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69 R
4588 11469 0.108019 TGCCAACAATTGCATGCCAA 59.892 45.000 16.68 10.06 37.94 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.203052 CGGAGGGAGTACTTTGCGTAA 59.797 52.381 0.00 0.00 0.00 3.18
254 1967 3.879295 CTGATATTTTCCCACGCACAGAT 59.121 43.478 0.00 0.00 0.00 2.90
398 2111 2.667199 TGGTCGAGTCGAGTCGCA 60.667 61.111 32.58 23.91 39.90 5.10
1161 4587 3.884091 GTCCCTAATCGAGCTTCAGTCTA 59.116 47.826 0.00 0.00 0.00 2.59
1253 4690 6.270755 AGCATATTCATCTCCTCTAGGGAAT 58.729 40.000 0.00 0.54 44.58 3.01
1314 4755 1.334960 CCACACATTGTCGGAAGTTGC 60.335 52.381 0.00 0.00 0.00 4.17
1348 4789 4.077108 ACCTTTAAAGATGAAACCGTCCC 58.923 43.478 16.98 0.00 0.00 4.46
1606 5238 7.915923 TGCAGAAGTACTTCTCTATTCGTTATG 59.084 37.037 30.95 18.42 46.13 1.90
1607 5239 8.129840 GCAGAAGTACTTCTCTATTCGTTATGA 58.870 37.037 30.95 0.00 46.13 2.15
1608 5240 9.440784 CAGAAGTACTTCTCTATTCGTTATGAC 57.559 37.037 30.95 3.32 46.13 3.06
1800 5599 3.332761 TTTTCTGTTGTGCATCACGAC 57.667 42.857 9.73 9.73 45.91 4.34
1929 5816 4.500205 CCTTGGTTATATGCAATGCTGGTG 60.500 45.833 6.82 0.00 0.00 4.17
1964 5853 7.792364 TGACTCTTTCTATTTCAGGACCTAA 57.208 36.000 0.00 0.00 0.00 2.69
2168 6057 6.691749 GCATACTTAAGGGATAAGCCTCCTTT 60.692 42.308 7.53 1.44 44.11 3.11
2176 6065 7.707467 AGGGATAAGCCTCCTTTTATTAAGA 57.293 36.000 0.00 0.00 35.50 2.10
2271 6162 4.533311 AGATCATTTTTGCCATCCCACTTT 59.467 37.500 0.00 0.00 0.00 2.66
2272 6163 4.703379 TCATTTTTGCCATCCCACTTTT 57.297 36.364 0.00 0.00 0.00 2.27
2277 6168 0.968405 TGCCATCCCACTTTTGCTTC 59.032 50.000 0.00 0.00 0.00 3.86
2454 6347 4.637534 AGCATAAGAAGCACAAACATCGAT 59.362 37.500 0.00 0.00 0.00 3.59
2932 6831 6.073112 TGCTTCTTGAATTTTTATTTGCTGCC 60.073 34.615 0.00 0.00 0.00 4.85
2962 6861 5.270853 ACGCAGAAGTTGATTGTTTTGTAC 58.729 37.500 0.00 0.00 0.00 2.90
2979 6878 9.730420 TGTTTTGTACTGCTTTTCTTAATTCTC 57.270 29.630 0.00 0.00 0.00 2.87
3272 7241 0.469892 AGTTTTGGACCTGGGCCAAG 60.470 55.000 31.65 3.42 45.39 3.61
3311 7288 5.352284 TCACTTGACTTGAGAAGTTCAGTC 58.648 41.667 12.66 12.66 43.03 3.51
3317 7295 6.682746 TGACTTGAGAAGTTCAGTCAGATAC 58.317 40.000 16.54 3.57 43.03 2.24
3412 7408 3.494048 GGCATGATCTGGTTAGGTCTGAG 60.494 52.174 0.00 0.00 35.01 3.35
3519 7518 3.695830 TGGGACACAATGAACTACTCC 57.304 47.619 0.00 0.00 0.00 3.85
3520 7519 2.304761 TGGGACACAATGAACTACTCCC 59.695 50.000 0.00 0.00 37.05 4.30
3521 7520 2.355818 GGGACACAATGAACTACTCCCC 60.356 54.545 0.00 0.00 31.16 4.81
3522 7521 2.572104 GGACACAATGAACTACTCCCCT 59.428 50.000 0.00 0.00 0.00 4.79
3523 7522 3.773119 GGACACAATGAACTACTCCCCTA 59.227 47.826 0.00 0.00 0.00 3.53
3524 7523 4.224370 GGACACAATGAACTACTCCCCTAA 59.776 45.833 0.00 0.00 0.00 2.69
3525 7524 5.280317 GGACACAATGAACTACTCCCCTAAA 60.280 44.000 0.00 0.00 0.00 1.85
3526 7525 6.388619 ACACAATGAACTACTCCCCTAAAT 57.611 37.500 0.00 0.00 0.00 1.40
3527 7526 7.365295 GGACACAATGAACTACTCCCCTAAATA 60.365 40.741 0.00 0.00 0.00 1.40
3528 7527 8.102484 ACACAATGAACTACTCCCCTAAATAT 57.898 34.615 0.00 0.00 0.00 1.28
3529 7528 8.557450 ACACAATGAACTACTCCCCTAAATATT 58.443 33.333 0.00 0.00 0.00 1.28
3530 7529 9.408648 CACAATGAACTACTCCCCTAAATATTT 57.591 33.333 5.89 5.89 0.00 1.40
3531 7530 9.408648 ACAATGAACTACTCCCCTAAATATTTG 57.591 33.333 11.05 1.40 0.00 2.32
3532 7531 9.408648 CAATGAACTACTCCCCTAAATATTTGT 57.591 33.333 11.05 1.79 0.00 2.83
3533 7532 9.628500 AATGAACTACTCCCCTAAATATTTGTC 57.372 33.333 11.05 0.00 0.00 3.18
3534 7533 8.388656 TGAACTACTCCCCTAAATATTTGTCT 57.611 34.615 11.05 0.00 0.00 3.41
3535 7534 8.832735 TGAACTACTCCCCTAAATATTTGTCTT 58.167 33.333 11.05 0.00 0.00 3.01
3536 7535 9.682465 GAACTACTCCCCTAAATATTTGTCTTT 57.318 33.333 11.05 0.00 0.00 2.52
3537 7536 9.682465 AACTACTCCCCTAAATATTTGTCTTTC 57.318 33.333 11.05 0.00 0.00 2.62
3538 7537 9.059023 ACTACTCCCCTAAATATTTGTCTTTCT 57.941 33.333 11.05 0.00 0.00 2.52
3541 7540 9.280456 ACTCCCCTAAATATTTGTCTTTCTAGA 57.720 33.333 11.05 0.00 0.00 2.43
3542 7541 9.771534 CTCCCCTAAATATTTGTCTTTCTAGAG 57.228 37.037 11.05 0.00 0.00 2.43
3543 7542 9.502035 TCCCCTAAATATTTGTCTTTCTAGAGA 57.498 33.333 11.05 0.00 0.00 3.10
3555 7554 9.645059 TTGTCTTTCTAGAGATATCAACAAGTG 57.355 33.333 5.32 0.00 0.00 3.16
3556 7555 9.025041 TGTCTTTCTAGAGATATCAACAAGTGA 57.975 33.333 5.32 0.00 41.67 3.41
3565 7564 9.684448 AGAGATATCAACAAGTGATTACATACG 57.316 33.333 5.32 0.00 45.13 3.06
3566 7565 8.818141 AGATATCAACAAGTGATTACATACGG 57.182 34.615 5.32 0.00 45.13 4.02
3567 7566 8.638873 AGATATCAACAAGTGATTACATACGGA 58.361 33.333 5.32 0.00 45.13 4.69
3568 7567 8.818141 ATATCAACAAGTGATTACATACGGAG 57.182 34.615 0.00 0.00 45.13 4.63
3569 7568 4.868171 TCAACAAGTGATTACATACGGAGC 59.132 41.667 0.00 0.00 0.00 4.70
3570 7569 4.465632 ACAAGTGATTACATACGGAGCA 57.534 40.909 0.00 0.00 0.00 4.26
3571 7570 4.827692 ACAAGTGATTACATACGGAGCAA 58.172 39.130 0.00 0.00 0.00 3.91
3572 7571 5.242434 ACAAGTGATTACATACGGAGCAAA 58.758 37.500 0.00 0.00 0.00 3.68
3573 7572 5.703592 ACAAGTGATTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 0.00 2.44
3574 7573 6.374333 ACAAGTGATTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
3575 7574 6.363577 AGTGATTACATACGGAGCAAAATG 57.636 37.500 0.00 0.00 0.00 2.32
3576 7575 6.112734 AGTGATTACATACGGAGCAAAATGA 58.887 36.000 0.00 0.00 0.00 2.57
3577 7576 6.258727 AGTGATTACATACGGAGCAAAATGAG 59.741 38.462 0.00 0.00 0.00 2.90
3578 7577 6.037172 GTGATTACATACGGAGCAAAATGAGT 59.963 38.462 0.00 0.00 0.00 3.41
3579 7578 5.794687 TTACATACGGAGCAAAATGAGTG 57.205 39.130 0.00 0.00 0.00 3.51
3580 7579 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3581 7580 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3582 7581 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3583 7582 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3584 7583 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3585 7584 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3586 7585 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3587 7586 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3588 7587 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3621 7620 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3623 7622 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3624 7623 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
3625 7624 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
3626 7625 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
3627 7626 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3628 7627 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3629 7628 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3630 7629 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3631 7630 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3632 7631 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3633 7632 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3634 7633 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3635 7634 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
3636 7635 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
3637 7636 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
3638 7637 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
3639 7638 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3640 7639 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3641 7640 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
3642 7641 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3643 7642 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
3644 7643 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3648 7647 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3649 7648 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3663 7662 9.685828 TCTAAAAAGACAAATATTTTGGAACGG 57.314 29.630 0.00 0.00 32.78 4.44
3664 7663 9.685828 CTAAAAAGACAAATATTTTGGAACGGA 57.314 29.630 0.00 0.00 29.76 4.69
3665 7664 8.587952 AAAAAGACAAATATTTTGGAACGGAG 57.412 30.769 0.00 0.00 29.76 4.63
3666 7665 5.897377 AGACAAATATTTTGGAACGGAGG 57.103 39.130 0.00 0.00 0.00 4.30
3667 7666 4.705023 AGACAAATATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
3668 7667 4.668636 ACAAATATTTTGGAACGGAGGGA 58.331 39.130 0.00 0.00 0.00 4.20
3669 7668 4.705023 ACAAATATTTTGGAACGGAGGGAG 59.295 41.667 0.00 0.00 0.00 4.30
3670 7669 4.586306 AATATTTTGGAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
3671 7670 5.703730 AATATTTTGGAACGGAGGGAGTA 57.296 39.130 0.00 0.00 0.00 2.59
3736 7735 4.158209 TCGAAATCATCACATGCCATTTGT 59.842 37.500 0.00 0.00 0.00 2.83
3770 7769 5.185454 TGATCTGCACCTTGTATAACCTTG 58.815 41.667 0.00 0.00 0.00 3.61
3872 7873 3.676646 GGCTTTTGTTTGCATCTGTGATC 59.323 43.478 0.00 0.00 0.00 2.92
4327 11160 8.313292 TGGGATTCTTTTAAAATTCAGGACATG 58.687 33.333 0.09 0.00 0.00 3.21
4562 11443 9.314321 AGGTTAATCTGTATTTGTAGAATGTCG 57.686 33.333 0.00 0.00 0.00 4.35
4563 11444 9.309516 GGTTAATCTGTATTTGTAGAATGTCGA 57.690 33.333 0.00 0.00 0.00 4.20
4565 11446 7.470289 AATCTGTATTTGTAGAATGTCGAGC 57.530 36.000 0.00 0.00 0.00 5.03
4566 11447 5.348986 TCTGTATTTGTAGAATGTCGAGCC 58.651 41.667 0.00 0.00 0.00 4.70
4567 11448 5.127194 TCTGTATTTGTAGAATGTCGAGCCT 59.873 40.000 0.00 0.00 0.00 4.58
4568 11449 6.320418 TCTGTATTTGTAGAATGTCGAGCCTA 59.680 38.462 0.00 0.00 0.00 3.93
4569 11450 6.869695 TGTATTTGTAGAATGTCGAGCCTAA 58.130 36.000 0.00 0.00 0.00 2.69
4570 11451 7.497595 TGTATTTGTAGAATGTCGAGCCTAAT 58.502 34.615 0.00 0.00 0.00 1.73
4571 11452 7.985184 TGTATTTGTAGAATGTCGAGCCTAATT 59.015 33.333 0.00 0.00 0.00 1.40
4572 11453 6.662414 TTTGTAGAATGTCGAGCCTAATTG 57.338 37.500 0.00 0.00 0.00 2.32
4573 11454 4.693283 TGTAGAATGTCGAGCCTAATTGG 58.307 43.478 0.00 0.00 39.35 3.16
4574 11455 3.914426 AGAATGTCGAGCCTAATTGGT 57.086 42.857 0.00 0.00 38.35 3.67
4575 11456 4.222124 AGAATGTCGAGCCTAATTGGTT 57.778 40.909 0.00 0.00 38.35 3.67
4576 11457 4.589908 AGAATGTCGAGCCTAATTGGTTT 58.410 39.130 0.00 0.00 38.35 3.27
4577 11458 4.396166 AGAATGTCGAGCCTAATTGGTTTG 59.604 41.667 0.00 0.00 38.35 2.93
4578 11459 3.410631 TGTCGAGCCTAATTGGTTTGA 57.589 42.857 0.00 0.00 37.15 2.69
4579 11460 3.950397 TGTCGAGCCTAATTGGTTTGAT 58.050 40.909 0.00 0.00 40.80 2.57
4580 11461 3.689161 TGTCGAGCCTAATTGGTTTGATG 59.311 43.478 0.00 0.00 40.80 3.07
4581 11462 2.682856 TCGAGCCTAATTGGTTTGATGC 59.317 45.455 0.00 0.00 34.94 3.91
4582 11463 2.223572 CGAGCCTAATTGGTTTGATGCC 60.224 50.000 0.00 0.00 38.35 4.40
4583 11464 2.760092 GAGCCTAATTGGTTTGATGCCA 59.240 45.455 0.00 0.00 38.35 4.92
4603 11484 5.821516 CCAATAATTGGCATGCAATTGTT 57.178 34.783 25.38 23.02 45.17 2.83
4604 11485 5.574082 CCAATAATTGGCATGCAATTGTTG 58.426 37.500 30.68 30.68 45.17 3.33
4605 11486 5.574082 CAATAATTGGCATGCAATTGTTGG 58.426 37.500 30.38 21.62 42.29 3.77
4606 11487 1.455248 ATTGGCATGCAATTGTTGGC 58.545 45.000 21.36 21.89 36.55 4.52
4607 11488 0.108019 TTGGCATGCAATTGTTGGCA 59.892 45.000 25.22 25.22 45.23 4.92
4608 11489 0.108019 TGGCATGCAATTGTTGGCAA 59.892 45.000 26.15 11.97 44.20 4.52
4609 11490 0.800012 GGCATGCAATTGTTGGCAAG 59.200 50.000 21.36 8.65 44.20 4.01
4610 11491 1.515081 GCATGCAATTGTTGGCAAGT 58.485 45.000 14.21 0.00 44.20 3.16
4611 11492 1.461897 GCATGCAATTGTTGGCAAGTC 59.538 47.619 14.21 0.00 44.20 3.01
4612 11493 2.868839 GCATGCAATTGTTGGCAAGTCT 60.869 45.455 14.21 0.00 44.20 3.24
4613 11494 3.614630 GCATGCAATTGTTGGCAAGTCTA 60.615 43.478 14.21 0.00 44.20 2.59
4614 11495 4.558178 CATGCAATTGTTGGCAAGTCTAA 58.442 39.130 7.40 0.00 44.20 2.10
4615 11496 4.662468 TGCAATTGTTGGCAAGTCTAAA 57.338 36.364 7.40 0.00 38.10 1.85
4616 11497 5.016051 TGCAATTGTTGGCAAGTCTAAAA 57.984 34.783 7.40 0.00 38.10 1.52
4617 11498 5.609423 TGCAATTGTTGGCAAGTCTAAAAT 58.391 33.333 7.40 0.00 38.10 1.82
4618 11499 6.054295 TGCAATTGTTGGCAAGTCTAAAATT 58.946 32.000 7.40 0.00 38.10 1.82
4619 11500 6.541641 TGCAATTGTTGGCAAGTCTAAAATTT 59.458 30.769 7.40 0.00 38.10 1.82
4620 11501 7.066766 TGCAATTGTTGGCAAGTCTAAAATTTT 59.933 29.630 8.75 8.75 38.10 1.82
4621 11502 7.376601 GCAATTGTTGGCAAGTCTAAAATTTTG 59.623 33.333 13.76 4.15 38.10 2.44
4622 11503 6.917217 TTGTTGGCAAGTCTAAAATTTTGG 57.083 33.333 13.76 10.78 0.00 3.28
4623 11504 4.813697 TGTTGGCAAGTCTAAAATTTTGGC 59.186 37.500 13.76 9.03 43.80 4.52
4624 11505 4.953940 TGGCAAGTCTAAAATTTTGGCT 57.046 36.364 13.76 9.08 43.85 4.75
4625 11506 4.881920 TGGCAAGTCTAAAATTTTGGCTC 58.118 39.130 13.76 7.30 43.85 4.70
4626 11507 4.588528 TGGCAAGTCTAAAATTTTGGCTCT 59.411 37.500 13.76 9.25 43.85 4.09
4627 11508 5.164233 GGCAAGTCTAAAATTTTGGCTCTC 58.836 41.667 13.76 7.36 41.31 3.20
4628 11509 5.278957 GGCAAGTCTAAAATTTTGGCTCTCA 60.279 40.000 13.76 0.00 41.31 3.27
4629 11510 6.215845 GCAAGTCTAAAATTTTGGCTCTCAA 58.784 36.000 13.76 0.00 0.00 3.02
4630 11511 6.870439 GCAAGTCTAAAATTTTGGCTCTCAAT 59.130 34.615 13.76 0.00 34.98 2.57
4631 11512 7.386025 GCAAGTCTAAAATTTTGGCTCTCAATT 59.614 33.333 13.76 0.00 34.98 2.32
4632 11513 8.706035 CAAGTCTAAAATTTTGGCTCTCAATTG 58.294 33.333 13.76 0.00 34.98 2.32
4633 11514 7.381323 AGTCTAAAATTTTGGCTCTCAATTGG 58.619 34.615 13.76 0.00 34.98 3.16
4634 11515 7.015584 AGTCTAAAATTTTGGCTCTCAATTGGT 59.984 33.333 13.76 0.00 34.98 3.67
4635 11516 7.657354 GTCTAAAATTTTGGCTCTCAATTGGTT 59.343 33.333 13.76 0.00 34.98 3.67
4636 11517 6.622833 AAAATTTTGGCTCTCAATTGGTTG 57.377 33.333 5.42 0.00 34.98 3.77
4637 11518 3.749665 TTTTGGCTCTCAATTGGTTGG 57.250 42.857 5.42 0.00 35.99 3.77
4638 11519 2.380064 TTGGCTCTCAATTGGTTGGT 57.620 45.000 5.42 0.00 35.99 3.67
4639 11520 2.380064 TGGCTCTCAATTGGTTGGTT 57.620 45.000 5.42 0.00 35.99 3.67
4640 11521 3.517296 TGGCTCTCAATTGGTTGGTTA 57.483 42.857 5.42 0.00 35.99 2.85
4641 11522 3.153919 TGGCTCTCAATTGGTTGGTTAC 58.846 45.455 5.42 0.00 35.99 2.50
4642 11523 6.963234 TTTGGCTCTCAATTGGTTGGTTACC 61.963 44.000 5.42 0.00 40.22 2.85
4659 11540 3.912899 CCAATTGGTTCTTGCCCAC 57.087 52.632 16.90 0.00 0.00 4.61
4660 11541 0.321346 CCAATTGGTTCTTGCCCACC 59.679 55.000 16.90 0.00 0.00 4.61
4661 11542 1.341080 CAATTGGTTCTTGCCCACCT 58.659 50.000 0.00 0.00 33.76 4.00
4662 11543 1.273327 CAATTGGTTCTTGCCCACCTC 59.727 52.381 0.00 0.00 33.76 3.85
4663 11544 0.779997 ATTGGTTCTTGCCCACCTCT 59.220 50.000 0.00 0.00 33.76 3.69
4664 11545 0.110486 TTGGTTCTTGCCCACCTCTC 59.890 55.000 0.00 0.00 33.76 3.20
4665 11546 1.059584 TGGTTCTTGCCCACCTCTCA 61.060 55.000 0.00 0.00 33.76 3.27
4666 11547 0.110486 GGTTCTTGCCCACCTCTCAA 59.890 55.000 0.00 0.00 0.00 3.02
4667 11548 1.478654 GGTTCTTGCCCACCTCTCAAA 60.479 52.381 0.00 0.00 0.00 2.69
4668 11549 2.306847 GTTCTTGCCCACCTCTCAAAA 58.693 47.619 0.00 0.00 0.00 2.44
4669 11550 2.693074 GTTCTTGCCCACCTCTCAAAAA 59.307 45.455 0.00 0.00 0.00 1.94
4670 11551 2.586425 TCTTGCCCACCTCTCAAAAAG 58.414 47.619 0.00 0.00 0.00 2.27
4671 11552 2.091885 TCTTGCCCACCTCTCAAAAAGT 60.092 45.455 0.00 0.00 0.00 2.66
4672 11553 2.452600 TGCCCACCTCTCAAAAAGTT 57.547 45.000 0.00 0.00 0.00 2.66
4673 11554 2.031120 TGCCCACCTCTCAAAAAGTTG 58.969 47.619 0.00 0.00 35.95 3.16
4674 11555 1.269778 GCCCACCTCTCAAAAAGTTGC 60.270 52.381 0.00 0.00 34.50 4.17
4675 11556 1.341209 CCCACCTCTCAAAAAGTTGCC 59.659 52.381 0.00 0.00 34.50 4.52
4676 11557 2.031120 CCACCTCTCAAAAAGTTGCCA 58.969 47.619 0.00 0.00 34.50 4.92
4677 11558 2.430332 CCACCTCTCAAAAAGTTGCCAA 59.570 45.455 0.00 0.00 34.50 4.52
4678 11559 3.447742 CACCTCTCAAAAAGTTGCCAAC 58.552 45.455 0.00 0.00 34.50 3.77
4679 11560 3.131046 CACCTCTCAAAAAGTTGCCAACT 59.869 43.478 3.74 3.74 45.46 3.16
4695 11576 3.342719 CCAACTTTTGGCAACTTTTGGT 58.657 40.909 18.41 3.54 45.17 3.67
4696 11577 3.755905 CCAACTTTTGGCAACTTTTGGTT 59.244 39.130 18.41 8.11 45.17 3.67
4697 11578 4.217334 CCAACTTTTGGCAACTTTTGGTTT 59.783 37.500 18.41 0.00 45.17 3.27
4698 11579 5.152804 CAACTTTTGGCAACTTTTGGTTTG 58.847 37.500 0.00 0.00 35.74 2.93
4699 11580 3.190327 ACTTTTGGCAACTTTTGGTTTGC 59.810 39.130 0.00 0.00 35.74 3.68
4700 11581 1.743996 TTGGCAACTTTTGGTTTGCC 58.256 45.000 16.71 16.71 44.54 4.52
4701 11582 3.467776 GGCAACTTTTGGTTTGCCA 57.532 47.368 18.26 0.00 44.14 4.92
4719 11600 3.615224 CCAAATGTTGGCTTGCCTAAT 57.385 42.857 13.18 1.35 45.17 1.73
4720 11601 4.734398 CCAAATGTTGGCTTGCCTAATA 57.266 40.909 13.18 4.79 45.17 0.98
4721 11602 5.280654 CCAAATGTTGGCTTGCCTAATAT 57.719 39.130 13.18 6.70 45.17 1.28
4722 11603 5.673514 CCAAATGTTGGCTTGCCTAATATT 58.326 37.500 13.18 11.47 45.17 1.28
4723 11604 5.524646 CCAAATGTTGGCTTGCCTAATATTG 59.475 40.000 13.18 11.61 45.17 1.90
4724 11605 4.942761 ATGTTGGCTTGCCTAATATTGG 57.057 40.909 13.18 0.00 0.00 3.16
4747 11628 3.442441 CCAAACCTTGGCAGCGAA 58.558 55.556 0.00 0.00 45.17 4.70
4748 11629 1.007387 CCAAACCTTGGCAGCGAAC 60.007 57.895 0.00 0.00 45.17 3.95
4749 11630 1.007387 CAAACCTTGGCAGCGAACC 60.007 57.895 0.00 0.00 0.00 3.62
4750 11631 1.454847 AAACCTTGGCAGCGAACCA 60.455 52.632 0.00 0.00 34.65 3.67
4751 11632 1.040339 AAACCTTGGCAGCGAACCAA 61.040 50.000 7.72 7.72 44.86 3.67
4752 11633 0.827507 AACCTTGGCAGCGAACCAAT 60.828 50.000 8.32 0.00 45.84 3.16
4753 11634 0.827507 ACCTTGGCAGCGAACCAATT 60.828 50.000 8.32 0.00 45.84 2.32
4754 11635 1.173043 CCTTGGCAGCGAACCAATTA 58.827 50.000 8.32 0.00 45.84 1.40
4755 11636 1.133025 CCTTGGCAGCGAACCAATTAG 59.867 52.381 8.32 0.00 45.84 1.73
4756 11637 0.525761 TTGGCAGCGAACCAATTAGC 59.474 50.000 4.28 0.00 42.23 3.09
4757 11638 1.312371 TGGCAGCGAACCAATTAGCC 61.312 55.000 0.00 0.00 37.16 3.93
4758 11639 1.032114 GGCAGCGAACCAATTAGCCT 61.032 55.000 0.00 0.00 37.16 4.58
4759 11640 0.378610 GCAGCGAACCAATTAGCCTC 59.621 55.000 0.00 0.00 37.16 4.70
4760 11641 0.652592 CAGCGAACCAATTAGCCTCG 59.347 55.000 0.00 0.00 37.16 4.63
4832 11716 2.414612 ACCCACCTTTGTCCTAGAACA 58.585 47.619 0.00 0.00 0.00 3.18
4833 11717 2.105993 ACCCACCTTTGTCCTAGAACAC 59.894 50.000 0.00 0.00 0.00 3.32
4834 11718 2.105821 CCCACCTTTGTCCTAGAACACA 59.894 50.000 0.00 0.00 0.00 3.72
4875 11773 2.158755 CCAGGTATTGCAGACCCTAAGG 60.159 54.545 14.55 9.13 37.73 2.69
4927 11826 7.602753 ACCAGACTAAAACCAAAGCATTATTC 58.397 34.615 0.00 0.00 0.00 1.75
4993 11904 7.202526 ACCAAATCTGTTGTGTTTTGAGTATG 58.797 34.615 0.00 0.00 32.17 2.39
4999 11910 4.637977 TGTTGTGTTTTGAGTATGACAGCA 59.362 37.500 0.00 0.00 0.00 4.41
5014 11925 3.259374 TGACAGCAGAGAGGAAAACTAGG 59.741 47.826 0.00 0.00 0.00 3.02
5016 11927 2.569404 CAGCAGAGAGGAAAACTAGGGT 59.431 50.000 0.00 0.00 0.00 4.34
5081 11993 4.720775 TGGTTGTGCCATCCATATATCA 57.279 40.909 2.02 0.00 43.61 2.15
5132 12044 7.801104 TGGTAGCACAATAAAGATCCAAGATA 58.199 34.615 0.00 0.00 0.00 1.98
5179 12091 2.548464 AGTTCAGCAGAGGAGAGGAT 57.452 50.000 0.00 0.00 0.00 3.24
5180 12092 3.678965 AGTTCAGCAGAGGAGAGGATA 57.321 47.619 0.00 0.00 0.00 2.59
5181 12093 4.197559 AGTTCAGCAGAGGAGAGGATAT 57.802 45.455 0.00 0.00 0.00 1.63
5182 12094 4.555689 AGTTCAGCAGAGGAGAGGATATT 58.444 43.478 0.00 0.00 0.00 1.28
5183 12095 5.710646 AGTTCAGCAGAGGAGAGGATATTA 58.289 41.667 0.00 0.00 0.00 0.98
5184 12096 6.322126 AGTTCAGCAGAGGAGAGGATATTAT 58.678 40.000 0.00 0.00 0.00 1.28
5185 12097 7.474445 AGTTCAGCAGAGGAGAGGATATTATA 58.526 38.462 0.00 0.00 0.00 0.98
5186 12098 8.121833 AGTTCAGCAGAGGAGAGGATATTATAT 58.878 37.037 0.00 0.00 0.00 0.86
5187 12099 9.415008 GTTCAGCAGAGGAGAGGATATTATATA 57.585 37.037 0.00 0.00 0.00 0.86
5189 12101 9.585369 TCAGCAGAGGAGAGGATATTATATATG 57.415 37.037 0.00 0.00 0.00 1.78
5190 12102 9.365906 CAGCAGAGGAGAGGATATTATATATGT 57.634 37.037 0.00 0.00 0.00 2.29
5191 12103 9.950306 AGCAGAGGAGAGGATATTATATATGTT 57.050 33.333 0.00 0.00 0.00 2.71
5226 12138 9.162733 AGCTAGAGGATAGTATATACTACTCCC 57.837 40.741 27.15 23.83 41.18 4.30
5227 12139 9.162733 GCTAGAGGATAGTATATACTACTCCCT 57.837 40.741 27.15 26.31 41.18 4.20
5232 12144 8.716779 AGGATAGTATATACTACTCCCTAGTGC 58.283 40.741 27.15 16.58 41.18 4.40
5233 12145 7.938490 GGATAGTATATACTACTCCCTAGTGCC 59.062 44.444 22.07 9.02 41.18 5.01
5234 12146 6.715350 AGTATATACTACTCCCTAGTGCCA 57.285 41.667 13.88 0.00 36.29 4.92
5235 12147 7.100068 AGTATATACTACTCCCTAGTGCCAA 57.900 40.000 13.88 0.00 36.29 4.52
5236 12148 7.533083 AGTATATACTACTCCCTAGTGCCAAA 58.467 38.462 13.88 0.00 36.29 3.28
5237 12149 8.008922 AGTATATACTACTCCCTAGTGCCAAAA 58.991 37.037 13.88 0.00 36.29 2.44
5238 12150 7.685849 ATATACTACTCCCTAGTGCCAAAAA 57.314 36.000 0.00 0.00 36.29 1.94
5239 12151 4.017177 ACTACTCCCTAGTGCCAAAAAC 57.983 45.455 0.00 0.00 36.36 2.43
5240 12152 1.892209 ACTCCCTAGTGCCAAAAACG 58.108 50.000 0.00 0.00 33.57 3.60
5241 12153 1.142262 ACTCCCTAGTGCCAAAAACGT 59.858 47.619 0.00 0.00 33.57 3.99
5242 12154 2.227194 CTCCCTAGTGCCAAAAACGTT 58.773 47.619 0.00 0.00 0.00 3.99
5243 12155 2.223745 TCCCTAGTGCCAAAAACGTTC 58.776 47.619 0.00 0.00 0.00 3.95
5244 12156 2.158726 TCCCTAGTGCCAAAAACGTTCT 60.159 45.455 0.00 0.00 0.00 3.01
5245 12157 2.621526 CCCTAGTGCCAAAAACGTTCTT 59.378 45.455 0.00 0.00 0.00 2.52
5246 12158 3.816523 CCCTAGTGCCAAAAACGTTCTTA 59.183 43.478 0.00 0.00 0.00 2.10
5247 12159 4.457949 CCCTAGTGCCAAAAACGTTCTTAT 59.542 41.667 0.00 0.00 0.00 1.73
5248 12160 5.644636 CCCTAGTGCCAAAAACGTTCTTATA 59.355 40.000 0.00 0.00 0.00 0.98
5249 12161 6.317893 CCCTAGTGCCAAAAACGTTCTTATAT 59.682 38.462 0.00 0.00 0.00 0.86
5250 12162 7.148137 CCCTAGTGCCAAAAACGTTCTTATATT 60.148 37.037 0.00 0.00 0.00 1.28
5251 12163 8.885722 CCTAGTGCCAAAAACGTTCTTATATTA 58.114 33.333 0.00 0.00 0.00 0.98
5252 12164 9.698617 CTAGTGCCAAAAACGTTCTTATATTAC 57.301 33.333 0.00 0.00 0.00 1.89
5253 12165 7.238571 AGTGCCAAAAACGTTCTTATATTACG 58.761 34.615 0.00 0.00 40.85 3.18
5254 12166 6.466730 GTGCCAAAAACGTTCTTATATTACGG 59.533 38.462 0.00 0.00 39.45 4.02
5255 12167 5.967088 GCCAAAAACGTTCTTATATTACGGG 59.033 40.000 0.00 0.00 39.45 5.28
5256 12168 6.183360 GCCAAAAACGTTCTTATATTACGGGA 60.183 38.462 0.00 0.00 39.45 5.14
5257 12169 7.182089 CCAAAAACGTTCTTATATTACGGGAC 58.818 38.462 0.00 0.00 39.45 4.46
5296 12208 1.721389 CGACACGGATTCACACTGAAG 59.279 52.381 0.00 0.00 40.05 3.02
5297 12209 2.607038 CGACACGGATTCACACTGAAGA 60.607 50.000 0.00 0.00 40.05 2.87
5298 12210 2.731976 GACACGGATTCACACTGAAGAC 59.268 50.000 0.00 0.00 40.05 3.01
5299 12211 2.365617 ACACGGATTCACACTGAAGACT 59.634 45.455 0.00 0.00 40.05 3.24
5300 12212 2.733552 CACGGATTCACACTGAAGACTG 59.266 50.000 0.00 0.00 40.05 3.51
5301 12213 2.628178 ACGGATTCACACTGAAGACTGA 59.372 45.455 0.00 0.00 40.05 3.41
5302 12214 3.069586 ACGGATTCACACTGAAGACTGAA 59.930 43.478 0.00 0.00 40.05 3.02
5335 12247 8.868103 AGACATATGATAGAGCAAGAAGAATCA 58.132 33.333 10.38 0.00 0.00 2.57
5393 12305 6.660521 TGGTTGAGCAAAGAAGATGATATGTT 59.339 34.615 0.00 0.00 0.00 2.71
5413 12326 7.732222 ATGTTAGAGGAAGAGAGAAGATGTT 57.268 36.000 0.00 0.00 0.00 2.71
5424 12337 8.961294 AAGAGAGAAGATGTTAAGATGAATGG 57.039 34.615 0.00 0.00 0.00 3.16
5441 12354 1.979809 TGGGGATCCACAATGGTACT 58.020 50.000 16.35 0.00 39.03 2.73
5442 12355 1.563879 TGGGGATCCACAATGGTACTG 59.436 52.381 16.35 0.00 39.03 2.74
5443 12356 1.564348 GGGGATCCACAATGGTACTGT 59.436 52.381 15.23 0.00 39.03 3.55
5444 12357 2.421529 GGGGATCCACAATGGTACTGTC 60.422 54.545 15.23 0.00 39.03 3.51
5445 12358 2.238646 GGGATCCACAATGGTACTGTCA 59.761 50.000 15.23 0.00 39.03 3.58
5446 12359 3.117888 GGGATCCACAATGGTACTGTCAT 60.118 47.826 15.23 0.00 39.03 3.06
5447 12360 4.526970 GGATCCACAATGGTACTGTCATT 58.473 43.478 6.95 0.00 39.03 2.57
5448 12361 5.397447 GGGATCCACAATGGTACTGTCATTA 60.397 44.000 15.23 0.00 39.03 1.90
5449 12362 5.760253 GGATCCACAATGGTACTGTCATTAG 59.240 44.000 6.95 0.00 39.03 1.73
5450 12363 5.755409 TCCACAATGGTACTGTCATTAGT 57.245 39.130 0.00 0.00 39.03 2.24
5451 12364 5.487433 TCCACAATGGTACTGTCATTAGTG 58.513 41.667 12.98 12.98 39.03 2.74
5452 12365 5.247337 TCCACAATGGTACTGTCATTAGTGA 59.753 40.000 17.22 0.00 39.03 3.41
5453 12366 6.070251 TCCACAATGGTACTGTCATTAGTGAT 60.070 38.462 17.22 0.00 39.03 3.06
5454 12367 6.037500 CCACAATGGTACTGTCATTAGTGATG 59.962 42.308 17.22 0.00 36.68 3.07
5455 12368 5.586243 ACAATGGTACTGTCATTAGTGATGC 59.414 40.000 0.00 0.00 36.60 3.91
5456 12369 4.137116 TGGTACTGTCATTAGTGATGCC 57.863 45.455 0.00 0.00 36.60 4.40
5457 12370 3.774766 TGGTACTGTCATTAGTGATGCCT 59.225 43.478 0.00 0.00 36.60 4.75
5458 12371 4.225042 TGGTACTGTCATTAGTGATGCCTT 59.775 41.667 0.00 0.00 36.60 4.35
5459 12372 4.811557 GGTACTGTCATTAGTGATGCCTTC 59.188 45.833 0.00 0.00 36.60 3.46
5460 12373 4.558226 ACTGTCATTAGTGATGCCTTCA 57.442 40.909 0.00 0.00 36.60 3.02
5470 12383 3.998913 TGATGCCTTCACACCAATAGA 57.001 42.857 0.00 0.00 0.00 1.98
5471 12384 4.508551 TGATGCCTTCACACCAATAGAT 57.491 40.909 0.00 0.00 0.00 1.98
5472 12385 4.201657 TGATGCCTTCACACCAATAGATG 58.798 43.478 0.00 0.00 0.00 2.90
5473 12386 3.719268 TGCCTTCACACCAATAGATGT 57.281 42.857 0.00 0.00 0.00 3.06
5474 12387 4.835284 TGCCTTCACACCAATAGATGTA 57.165 40.909 0.00 0.00 0.00 2.29
5475 12388 5.172687 TGCCTTCACACCAATAGATGTAA 57.827 39.130 0.00 0.00 0.00 2.41
5476 12389 5.185454 TGCCTTCACACCAATAGATGTAAG 58.815 41.667 0.00 0.00 0.00 2.34
5477 12390 4.035675 GCCTTCACACCAATAGATGTAAGC 59.964 45.833 0.00 0.00 0.00 3.09
5478 12391 5.431765 CCTTCACACCAATAGATGTAAGCT 58.568 41.667 0.00 0.00 35.48 3.74
5479 12392 5.882557 CCTTCACACCAATAGATGTAAGCTT 59.117 40.000 3.48 3.48 30.71 3.74
5480 12393 6.375455 CCTTCACACCAATAGATGTAAGCTTT 59.625 38.462 3.20 0.00 30.71 3.51
5481 12394 6.741992 TCACACCAATAGATGTAAGCTTTG 57.258 37.500 3.20 0.00 30.71 2.77
5482 12395 5.123820 TCACACCAATAGATGTAAGCTTTGC 59.876 40.000 3.20 0.00 30.71 3.68
5483 12396 4.094887 ACACCAATAGATGTAAGCTTTGCG 59.905 41.667 3.20 0.00 30.71 4.85
5484 12397 3.627577 ACCAATAGATGTAAGCTTTGCGG 59.372 43.478 3.20 0.00 30.71 5.69
5485 12398 3.627577 CCAATAGATGTAAGCTTTGCGGT 59.372 43.478 3.20 0.00 30.71 5.68
5486 12399 4.096382 CCAATAGATGTAAGCTTTGCGGTT 59.904 41.667 3.20 0.00 30.71 4.44
5487 12400 4.882671 ATAGATGTAAGCTTTGCGGTTG 57.117 40.909 3.20 0.00 30.71 3.77
5488 12401 1.812571 AGATGTAAGCTTTGCGGTTGG 59.187 47.619 3.20 0.00 34.65 3.77
5489 12402 1.539827 GATGTAAGCTTTGCGGTTGGT 59.460 47.619 3.20 0.00 34.65 3.67
5490 12403 0.948678 TGTAAGCTTTGCGGTTGGTC 59.051 50.000 3.20 0.00 34.65 4.02
5491 12404 1.235724 GTAAGCTTTGCGGTTGGTCT 58.764 50.000 3.20 0.00 34.65 3.85
5492 12405 1.197036 GTAAGCTTTGCGGTTGGTCTC 59.803 52.381 3.20 0.00 34.65 3.36
5493 12406 0.465460 AAGCTTTGCGGTTGGTCTCA 60.465 50.000 0.00 0.00 30.87 3.27
5494 12407 0.250901 AGCTTTGCGGTTGGTCTCAT 60.251 50.000 0.00 0.00 0.00 2.90
5495 12408 0.109597 GCTTTGCGGTTGGTCTCATG 60.110 55.000 0.00 0.00 0.00 3.07
5496 12409 1.522668 CTTTGCGGTTGGTCTCATGA 58.477 50.000 0.00 0.00 0.00 3.07
5497 12410 1.879380 CTTTGCGGTTGGTCTCATGAA 59.121 47.619 0.00 0.00 0.00 2.57
5498 12411 1.234821 TTGCGGTTGGTCTCATGAAC 58.765 50.000 0.00 0.00 0.00 3.18
5499 12412 0.605319 TGCGGTTGGTCTCATGAACC 60.605 55.000 15.94 15.94 36.55 3.62
5500 12413 0.605319 GCGGTTGGTCTCATGAACCA 60.605 55.000 19.56 19.56 39.36 3.67
5501 12414 1.156736 CGGTTGGTCTCATGAACCAC 58.843 55.000 21.86 17.50 39.36 4.16
5502 12415 1.270839 CGGTTGGTCTCATGAACCACT 60.271 52.381 21.86 0.00 39.36 4.00
5503 12416 2.810400 CGGTTGGTCTCATGAACCACTT 60.810 50.000 21.86 0.00 39.36 3.16
5504 12417 3.556213 CGGTTGGTCTCATGAACCACTTA 60.556 47.826 21.86 10.66 39.36 2.24
5505 12418 4.003648 GGTTGGTCTCATGAACCACTTAG 58.996 47.826 21.86 0.00 39.23 2.18
5506 12419 4.262894 GGTTGGTCTCATGAACCACTTAGA 60.263 45.833 21.86 10.13 39.23 2.10
5507 12420 4.808414 TGGTCTCATGAACCACTTAGAG 57.192 45.455 19.56 0.00 0.00 2.43
5508 12421 3.055819 TGGTCTCATGAACCACTTAGAGC 60.056 47.826 19.56 11.04 33.31 4.09
5509 12422 3.055819 GGTCTCATGAACCACTTAGAGCA 60.056 47.826 17.20 0.00 33.02 4.26
5510 12423 4.563580 GGTCTCATGAACCACTTAGAGCAA 60.564 45.833 17.20 0.00 33.02 3.91
5511 12424 4.390297 GTCTCATGAACCACTTAGAGCAAC 59.610 45.833 0.00 0.00 0.00 4.17
5512 12425 4.284490 TCTCATGAACCACTTAGAGCAACT 59.716 41.667 0.00 0.00 0.00 3.16
5513 12426 5.480422 TCTCATGAACCACTTAGAGCAACTA 59.520 40.000 0.00 0.00 0.00 2.24
5514 12427 5.724328 TCATGAACCACTTAGAGCAACTAG 58.276 41.667 0.00 0.00 32.30 2.57
5515 12428 5.480422 TCATGAACCACTTAGAGCAACTAGA 59.520 40.000 0.00 0.00 32.30 2.43
5516 12429 6.155221 TCATGAACCACTTAGAGCAACTAGAT 59.845 38.462 0.00 0.00 32.30 1.98
5517 12430 7.342026 TCATGAACCACTTAGAGCAACTAGATA 59.658 37.037 0.00 0.00 32.30 1.98
5518 12431 7.661536 TGAACCACTTAGAGCAACTAGATAT 57.338 36.000 0.00 0.00 32.30 1.63
5519 12432 7.717568 TGAACCACTTAGAGCAACTAGATATC 58.282 38.462 0.00 0.00 32.30 1.63
5520 12433 6.658188 ACCACTTAGAGCAACTAGATATCC 57.342 41.667 0.00 0.00 32.30 2.59
5521 12434 6.377912 ACCACTTAGAGCAACTAGATATCCT 58.622 40.000 0.00 0.00 32.30 3.24
5522 12435 6.841755 ACCACTTAGAGCAACTAGATATCCTT 59.158 38.462 0.00 0.00 32.30 3.36
5523 12436 7.151308 CCACTTAGAGCAACTAGATATCCTTG 58.849 42.308 0.00 0.43 32.30 3.61
5524 12437 7.014711 CCACTTAGAGCAACTAGATATCCTTGA 59.985 40.741 0.00 0.00 32.30 3.02
5525 12438 8.417106 CACTTAGAGCAACTAGATATCCTTGAA 58.583 37.037 0.00 0.00 32.30 2.69
5526 12439 8.982723 ACTTAGAGCAACTAGATATCCTTGAAA 58.017 33.333 0.00 0.00 32.30 2.69
5527 12440 9.823647 CTTAGAGCAACTAGATATCCTTGAAAA 57.176 33.333 0.00 0.00 32.30 2.29
5529 12442 8.499403 AGAGCAACTAGATATCCTTGAAAAAC 57.501 34.615 0.00 0.00 0.00 2.43
5530 12443 8.325046 AGAGCAACTAGATATCCTTGAAAAACT 58.675 33.333 0.00 0.00 0.00 2.66
5531 12444 9.601217 GAGCAACTAGATATCCTTGAAAAACTA 57.399 33.333 0.00 0.00 0.00 2.24
5532 12445 9.959721 AGCAACTAGATATCCTTGAAAAACTAA 57.040 29.630 0.00 0.00 0.00 2.24
5533 12446 9.989869 GCAACTAGATATCCTTGAAAAACTAAC 57.010 33.333 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 1967 4.948341 TCGGCAATCAAGGCTTACTATA 57.052 40.909 0.00 0.00 0.00 1.31
335 2048 4.527583 CTCCGCTCCAGCTCCAGC 62.528 72.222 3.62 3.62 39.32 4.85
336 2049 0.825425 TATCTCCGCTCCAGCTCCAG 60.825 60.000 0.00 0.00 39.32 3.86
337 2050 1.109920 GTATCTCCGCTCCAGCTCCA 61.110 60.000 0.00 0.00 39.32 3.86
338 2051 1.663173 GTATCTCCGCTCCAGCTCC 59.337 63.158 0.00 0.00 39.32 4.70
339 2052 1.167155 TCGTATCTCCGCTCCAGCTC 61.167 60.000 0.00 0.00 39.32 4.09
340 2053 0.538516 ATCGTATCTCCGCTCCAGCT 60.539 55.000 0.00 0.00 39.32 4.24
398 2111 1.912043 GCAGGGGCAGAGGATACATAT 59.088 52.381 0.00 0.00 40.72 1.78
1046 3035 4.162690 CCTCACCGTGGCTAGGGC 62.163 72.222 8.93 0.00 35.21 5.19
1140 3138 3.019799 AGACTGAAGCTCGATTAGGGA 57.980 47.619 0.00 0.00 0.00 4.20
1161 4587 4.899502 ACTTCTTGTCGTCAGAATCCATT 58.100 39.130 0.00 0.00 0.00 3.16
1253 4690 8.902806 CATCCATAGTTAATTACAGAGGCAAAA 58.097 33.333 0.00 0.00 0.00 2.44
1314 4755 8.284945 TCATCTTTAAAGGTGAGAAATCCATG 57.715 34.615 24.21 11.58 41.04 3.66
1348 4789 4.528674 CAGAGGATGCTCCCAACG 57.471 61.111 11.06 0.00 37.19 4.10
1467 5094 5.347907 GTGGTCAAAAGACAGATACCTTACG 59.652 44.000 0.00 0.00 0.00 3.18
1606 5238 5.753438 TGATGGCTACAAGATAACAATCGTC 59.247 40.000 0.00 0.00 0.00 4.20
1607 5239 5.670485 TGATGGCTACAAGATAACAATCGT 58.330 37.500 0.00 0.00 0.00 3.73
1608 5240 5.333645 GCTGATGGCTACAAGATAACAATCG 60.334 44.000 0.00 0.00 38.06 3.34
1800 5599 7.069578 TCTGGTAGGGTCTAATAAAGTAGCTTG 59.930 40.741 0.00 0.00 0.00 4.01
1964 5853 1.414061 AACAGCACCAGTGAGCTCCT 61.414 55.000 12.15 5.01 39.50 3.69
2176 6065 4.325344 CCCCAGAGTTTCCATATCAAAGGT 60.325 45.833 0.00 0.00 0.00 3.50
2271 6162 4.804868 ATGCAATAACACCATGAAGCAA 57.195 36.364 0.00 0.00 34.15 3.91
2272 6163 4.804868 AATGCAATAACACCATGAAGCA 57.195 36.364 0.00 0.00 35.03 3.91
2277 6168 7.490840 TGATAGGAAAATGCAATAACACCATG 58.509 34.615 0.00 0.00 0.00 3.66
2311 6204 3.007182 AGCCTGTTGATTGGTTTGATTGG 59.993 43.478 0.00 0.00 0.00 3.16
2316 6209 3.731652 TTCAGCCTGTTGATTGGTTTG 57.268 42.857 0.00 0.00 0.00 2.93
2454 6347 8.411683 GTCTTTGTCTTTAGACCGATCCTTATA 58.588 37.037 7.39 0.00 44.15 0.98
2612 6508 1.604378 CGTCCCCTCATGCTTCCTT 59.396 57.895 0.00 0.00 0.00 3.36
2932 6831 0.878523 TCAACTTCTGCGTCAACCCG 60.879 55.000 0.00 0.00 0.00 5.28
2962 6861 7.173907 TGGAAGACAGAGAATTAAGAAAAGCAG 59.826 37.037 0.00 0.00 0.00 4.24
3272 7241 6.481644 AGTCAAGTGAGACTGAAGAAATGAAC 59.518 38.462 0.00 0.00 46.58 3.18
3311 7288 8.149647 AGAGATGCTAATCAAAGGAAGTATCTG 58.850 37.037 6.53 0.00 40.20 2.90
3317 7295 6.705381 CCACTAGAGATGCTAATCAAAGGAAG 59.295 42.308 0.00 0.00 35.03 3.46
3362 7346 5.705609 TTAAAGAAAATCAGCAGTCCCAC 57.294 39.130 0.00 0.00 0.00 4.61
3367 7351 9.135189 TGCCATATATTAAAGAAAATCAGCAGT 57.865 29.630 0.00 0.00 0.00 4.40
3529 7528 9.645059 CACTTGTTGATATCTCTAGAAAGACAA 57.355 33.333 3.98 0.00 0.00 3.18
3530 7529 9.025041 TCACTTGTTGATATCTCTAGAAAGACA 57.975 33.333 3.98 0.00 0.00 3.41
3539 7538 9.684448 CGTATGTAATCACTTGTTGATATCTCT 57.316 33.333 3.98 0.00 44.86 3.10
3540 7539 8.916654 CCGTATGTAATCACTTGTTGATATCTC 58.083 37.037 3.98 0.00 44.86 2.75
3541 7540 8.638873 TCCGTATGTAATCACTTGTTGATATCT 58.361 33.333 3.98 0.00 44.86 1.98
3542 7541 8.812147 TCCGTATGTAATCACTTGTTGATATC 57.188 34.615 0.00 0.00 44.86 1.63
3543 7542 7.385205 GCTCCGTATGTAATCACTTGTTGATAT 59.615 37.037 0.00 0.00 44.86 1.63
3544 7543 6.700081 GCTCCGTATGTAATCACTTGTTGATA 59.300 38.462 0.00 0.00 44.86 2.15
3546 7545 4.868171 GCTCCGTATGTAATCACTTGTTGA 59.132 41.667 0.00 0.00 39.11 3.18
3547 7546 4.629634 TGCTCCGTATGTAATCACTTGTTG 59.370 41.667 0.00 0.00 0.00 3.33
3548 7547 4.827692 TGCTCCGTATGTAATCACTTGTT 58.172 39.130 0.00 0.00 0.00 2.83
3549 7548 4.465632 TGCTCCGTATGTAATCACTTGT 57.534 40.909 0.00 0.00 0.00 3.16
3550 7549 5.794687 TTTGCTCCGTATGTAATCACTTG 57.205 39.130 0.00 0.00 0.00 3.16
3551 7550 6.597672 TCATTTTGCTCCGTATGTAATCACTT 59.402 34.615 0.00 0.00 0.00 3.16
3552 7551 6.112734 TCATTTTGCTCCGTATGTAATCACT 58.887 36.000 0.00 0.00 0.00 3.41
3553 7552 6.037172 ACTCATTTTGCTCCGTATGTAATCAC 59.963 38.462 0.00 0.00 0.00 3.06
3554 7553 6.037062 CACTCATTTTGCTCCGTATGTAATCA 59.963 38.462 0.00 0.00 0.00 2.57
3555 7554 6.257849 TCACTCATTTTGCTCCGTATGTAATC 59.742 38.462 0.00 0.00 0.00 1.75
3556 7555 6.112734 TCACTCATTTTGCTCCGTATGTAAT 58.887 36.000 0.00 0.00 0.00 1.89
3557 7556 5.483811 TCACTCATTTTGCTCCGTATGTAA 58.516 37.500 0.00 0.00 0.00 2.41
3558 7557 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3559 7558 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3560 7559 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3561 7560 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3562 7561 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3563 7562 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3564 7563 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3565 7564 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3566 7565 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3595 7594 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3597 7596 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3598 7597 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3599 7598 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3600 7599 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
3601 7600 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
3602 7601 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
3603 7602 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
3604 7603 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
3605 7604 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3606 7605 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3622 7621 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3623 7622 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3637 7636 9.685828 CCGTTCCAAAATATTTGTCTTTTTAGA 57.314 29.630 0.39 0.00 0.00 2.10
3638 7637 9.685828 TCCGTTCCAAAATATTTGTCTTTTTAG 57.314 29.630 0.39 0.00 0.00 1.85
3639 7638 9.685828 CTCCGTTCCAAAATATTTGTCTTTTTA 57.314 29.630 0.39 0.00 0.00 1.52
3640 7639 7.655732 CCTCCGTTCCAAAATATTTGTCTTTTT 59.344 33.333 0.39 0.00 0.00 1.94
3641 7640 7.151976 CCTCCGTTCCAAAATATTTGTCTTTT 58.848 34.615 0.39 0.00 0.00 2.27
3642 7641 6.295067 CCCTCCGTTCCAAAATATTTGTCTTT 60.295 38.462 0.39 0.00 0.00 2.52
3643 7642 5.185056 CCCTCCGTTCCAAAATATTTGTCTT 59.815 40.000 0.39 0.00 0.00 3.01
3644 7643 4.705023 CCCTCCGTTCCAAAATATTTGTCT 59.295 41.667 0.39 0.00 0.00 3.41
3645 7644 4.703093 TCCCTCCGTTCCAAAATATTTGTC 59.297 41.667 0.39 0.00 0.00 3.18
3646 7645 4.668636 TCCCTCCGTTCCAAAATATTTGT 58.331 39.130 0.39 0.00 0.00 2.83
3647 7646 4.705023 ACTCCCTCCGTTCCAAAATATTTG 59.295 41.667 0.39 0.00 0.00 2.32
3648 7647 4.930696 ACTCCCTCCGTTCCAAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
3649 7648 4.586306 ACTCCCTCCGTTCCAAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
3650 7649 5.906772 ATACTCCCTCCGTTCCAAAATAT 57.093 39.130 0.00 0.00 0.00 1.28
3651 7650 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
3652 7651 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
3653 7652 5.502089 TTAATACTCCCTCCGTTCCAAAA 57.498 39.130 0.00 0.00 0.00 2.44
3654 7653 5.502089 TTTAATACTCCCTCCGTTCCAAA 57.498 39.130 0.00 0.00 0.00 3.28
3655 7654 5.502089 TTTTAATACTCCCTCCGTTCCAA 57.498 39.130 0.00 0.00 0.00 3.53
3656 7655 5.502089 TTTTTAATACTCCCTCCGTTCCA 57.498 39.130 0.00 0.00 0.00 3.53
3725 7724 8.706492 ATCATTAAACAGTTACAAATGGCATG 57.294 30.769 0.00 0.00 0.00 4.06
3736 7735 6.714810 ACAAGGTGCAGATCATTAAACAGTTA 59.285 34.615 0.00 0.00 0.00 2.24
3872 7873 7.897575 AAAAGTAAGAGTTAGAGTCTGCATG 57.102 36.000 1.86 0.00 0.00 4.06
4327 11160 3.256631 TCTCGTTAAAGGGACCTACACAC 59.743 47.826 0.00 0.00 0.00 3.82
4559 11440 3.487544 GCATCAAACCAATTAGGCTCGAC 60.488 47.826 0.00 0.00 43.14 4.20
4560 11441 2.682856 GCATCAAACCAATTAGGCTCGA 59.317 45.455 0.00 0.00 43.14 4.04
4561 11442 2.223572 GGCATCAAACCAATTAGGCTCG 60.224 50.000 0.00 0.00 43.14 5.03
4562 11443 2.760092 TGGCATCAAACCAATTAGGCTC 59.240 45.455 0.00 0.00 43.14 4.70
4563 11444 2.818921 TGGCATCAAACCAATTAGGCT 58.181 42.857 0.00 0.00 43.14 4.58
4564 11445 3.608316 TTGGCATCAAACCAATTAGGC 57.392 42.857 0.00 0.00 42.23 3.93
4587 11468 1.271434 TGCCAACAATTGCATGCCAAT 60.271 42.857 16.68 11.97 45.90 3.16
4588 11469 0.108019 TGCCAACAATTGCATGCCAA 59.892 45.000 16.68 10.06 37.94 4.52
4589 11470 0.108019 TTGCCAACAATTGCATGCCA 59.892 45.000 16.68 4.04 37.33 4.92
4590 11471 0.800012 CTTGCCAACAATTGCATGCC 59.200 50.000 16.68 0.00 37.33 4.40
4591 11472 1.461897 GACTTGCCAACAATTGCATGC 59.538 47.619 11.82 11.82 37.33 4.06
4592 11473 3.034721 AGACTTGCCAACAATTGCATG 57.965 42.857 5.05 5.10 37.33 4.06
4593 11474 4.870123 TTAGACTTGCCAACAATTGCAT 57.130 36.364 5.05 0.00 37.33 3.96
4594 11475 4.662468 TTTAGACTTGCCAACAATTGCA 57.338 36.364 5.05 0.00 34.61 4.08
4595 11476 6.544038 AATTTTAGACTTGCCAACAATTGC 57.456 33.333 5.05 0.00 34.61 3.56
4596 11477 7.856894 CCAAAATTTTAGACTTGCCAACAATTG 59.143 33.333 3.24 3.24 34.61 2.32
4597 11478 7.468494 GCCAAAATTTTAGACTTGCCAACAATT 60.468 33.333 2.44 0.00 34.61 2.32
4598 11479 6.017192 GCCAAAATTTTAGACTTGCCAACAAT 60.017 34.615 2.44 0.00 34.61 2.71
4599 11480 5.295540 GCCAAAATTTTAGACTTGCCAACAA 59.704 36.000 2.44 0.00 0.00 2.83
4600 11481 4.813697 GCCAAAATTTTAGACTTGCCAACA 59.186 37.500 2.44 0.00 0.00 3.33
4601 11482 5.056480 AGCCAAAATTTTAGACTTGCCAAC 58.944 37.500 2.44 0.00 0.00 3.77
4602 11483 5.070313 AGAGCCAAAATTTTAGACTTGCCAA 59.930 36.000 2.44 0.00 0.00 4.52
4603 11484 4.588528 AGAGCCAAAATTTTAGACTTGCCA 59.411 37.500 2.44 0.00 0.00 4.92
4604 11485 5.139435 AGAGCCAAAATTTTAGACTTGCC 57.861 39.130 2.44 0.00 0.00 4.52
4605 11486 5.772521 TGAGAGCCAAAATTTTAGACTTGC 58.227 37.500 2.44 0.68 0.00 4.01
4606 11487 8.706035 CAATTGAGAGCCAAAATTTTAGACTTG 58.294 33.333 2.44 0.00 38.43 3.16
4607 11488 7.874528 CCAATTGAGAGCCAAAATTTTAGACTT 59.125 33.333 7.12 0.00 38.43 3.01
4608 11489 7.015584 ACCAATTGAGAGCCAAAATTTTAGACT 59.984 33.333 7.12 1.32 38.43 3.24
4609 11490 7.154656 ACCAATTGAGAGCCAAAATTTTAGAC 58.845 34.615 7.12 0.00 38.43 2.59
4610 11491 7.301868 ACCAATTGAGAGCCAAAATTTTAGA 57.698 32.000 7.12 0.00 38.43 2.10
4611 11492 7.095102 CCAACCAATTGAGAGCCAAAATTTTAG 60.095 37.037 7.12 0.00 38.15 1.85
4612 11493 6.709846 CCAACCAATTGAGAGCCAAAATTTTA 59.290 34.615 7.12 0.00 38.15 1.52
4613 11494 5.532032 CCAACCAATTGAGAGCCAAAATTTT 59.468 36.000 7.12 0.00 38.15 1.82
4614 11495 5.065235 CCAACCAATTGAGAGCCAAAATTT 58.935 37.500 7.12 0.00 38.15 1.82
4615 11496 4.102996 ACCAACCAATTGAGAGCCAAAATT 59.897 37.500 7.12 0.00 38.15 1.82
4616 11497 3.647590 ACCAACCAATTGAGAGCCAAAAT 59.352 39.130 7.12 0.00 38.15 1.82
4617 11498 3.037549 ACCAACCAATTGAGAGCCAAAA 58.962 40.909 7.12 0.00 38.15 2.44
4618 11499 2.676748 ACCAACCAATTGAGAGCCAAA 58.323 42.857 7.12 0.00 38.15 3.28
4619 11500 2.380064 ACCAACCAATTGAGAGCCAA 57.620 45.000 7.12 0.00 38.15 4.52
4620 11501 2.380064 AACCAACCAATTGAGAGCCA 57.620 45.000 7.12 0.00 38.15 4.75
4621 11502 3.850122 GTAACCAACCAATTGAGAGCC 57.150 47.619 7.12 0.00 38.15 4.70
4641 11522 0.321346 GGTGGGCAAGAACCAATTGG 59.679 55.000 23.31 23.31 40.24 3.16
4642 11523 1.273327 GAGGTGGGCAAGAACCAATTG 59.727 52.381 0.00 0.00 40.24 2.32
4643 11524 1.147817 AGAGGTGGGCAAGAACCAATT 59.852 47.619 0.00 0.00 40.24 2.32
4644 11525 0.779997 AGAGGTGGGCAAGAACCAAT 59.220 50.000 0.00 0.00 40.24 3.16
4645 11526 0.110486 GAGAGGTGGGCAAGAACCAA 59.890 55.000 0.00 0.00 40.24 3.67
4646 11527 1.059584 TGAGAGGTGGGCAAGAACCA 61.060 55.000 0.00 0.00 39.05 3.67
4647 11528 0.110486 TTGAGAGGTGGGCAAGAACC 59.890 55.000 0.00 0.00 36.66 3.62
4648 11529 1.981256 TTTGAGAGGTGGGCAAGAAC 58.019 50.000 0.00 0.00 0.00 3.01
4649 11530 2.746279 TTTTGAGAGGTGGGCAAGAA 57.254 45.000 0.00 0.00 0.00 2.52
4650 11531 2.091885 ACTTTTTGAGAGGTGGGCAAGA 60.092 45.455 0.00 0.00 0.00 3.02
4651 11532 2.310538 ACTTTTTGAGAGGTGGGCAAG 58.689 47.619 0.00 0.00 0.00 4.01
4652 11533 2.430332 CAACTTTTTGAGAGGTGGGCAA 59.570 45.455 0.00 0.00 34.24 4.52
4653 11534 2.031120 CAACTTTTTGAGAGGTGGGCA 58.969 47.619 0.00 0.00 34.24 5.36
4654 11535 1.269778 GCAACTTTTTGAGAGGTGGGC 60.270 52.381 0.00 0.00 34.24 5.36
4655 11536 1.341209 GGCAACTTTTTGAGAGGTGGG 59.659 52.381 0.00 0.00 34.24 4.61
4656 11537 2.031120 TGGCAACTTTTTGAGAGGTGG 58.969 47.619 0.00 0.00 34.24 4.61
4657 11538 3.131046 AGTTGGCAACTTTTTGAGAGGTG 59.869 43.478 26.54 0.00 39.04 4.00
4658 11539 3.365472 AGTTGGCAACTTTTTGAGAGGT 58.635 40.909 26.54 0.60 39.04 3.85
4674 11555 4.217334 AAACCAAAAGTTGCCAAAAGTTGG 59.783 37.500 10.95 10.95 45.80 3.77
4675 11556 5.152804 CAAACCAAAAGTTGCCAAAAGTTG 58.847 37.500 0.00 0.00 39.19 3.16
4676 11557 4.320861 GCAAACCAAAAGTTGCCAAAAGTT 60.321 37.500 0.00 0.00 39.19 2.66
4677 11558 3.190327 GCAAACCAAAAGTTGCCAAAAGT 59.810 39.130 0.00 0.00 39.19 2.66
4678 11559 3.427368 GGCAAACCAAAAGTTGCCAAAAG 60.427 43.478 19.75 0.00 44.94 2.27
4679 11560 2.489722 GGCAAACCAAAAGTTGCCAAAA 59.510 40.909 19.75 0.00 44.94 2.44
4680 11561 2.087646 GGCAAACCAAAAGTTGCCAAA 58.912 42.857 19.75 0.00 44.94 3.28
4681 11562 1.743996 GGCAAACCAAAAGTTGCCAA 58.256 45.000 19.75 0.00 44.94 4.52
4682 11563 3.467776 GGCAAACCAAAAGTTGCCA 57.532 47.368 19.75 0.00 44.94 4.92
4683 11564 3.467776 TGGCAAACCAAAAGTTGCC 57.532 47.368 18.26 18.26 45.37 4.52
4700 11581 5.524646 CCAATATTAGGCAAGCCAACATTTG 59.475 40.000 14.40 10.64 38.92 2.32
4701 11582 5.673514 CCAATATTAGGCAAGCCAACATTT 58.326 37.500 14.40 0.00 38.92 2.32
4702 11583 5.280654 CCAATATTAGGCAAGCCAACATT 57.719 39.130 14.40 4.22 38.92 2.71
4703 11584 4.942761 CCAATATTAGGCAAGCCAACAT 57.057 40.909 14.40 4.54 38.92 2.71
4731 11612 1.007387 GGTTCGCTGCCAAGGTTTG 60.007 57.895 0.00 0.00 0.00 2.93
4732 11613 1.040339 TTGGTTCGCTGCCAAGGTTT 61.040 50.000 0.00 0.00 40.69 3.27
4733 11614 1.454847 TTGGTTCGCTGCCAAGGTT 60.455 52.632 0.00 0.00 40.69 3.50
4734 11615 2.194597 TTGGTTCGCTGCCAAGGT 59.805 55.556 0.00 0.00 40.69 3.50
4738 11619 1.312371 GGCTAATTGGTTCGCTGCCA 61.312 55.000 0.00 0.00 38.79 4.92
4739 11620 1.032114 AGGCTAATTGGTTCGCTGCC 61.032 55.000 0.00 0.00 39.19 4.85
4740 11621 0.378610 GAGGCTAATTGGTTCGCTGC 59.621 55.000 0.00 0.00 0.00 5.25
4741 11622 0.652592 CGAGGCTAATTGGTTCGCTG 59.347 55.000 5.30 0.00 0.00 5.18
4742 11623 0.462047 CCGAGGCTAATTGGTTCGCT 60.462 55.000 10.71 0.00 0.00 4.93
4743 11624 0.461339 TCCGAGGCTAATTGGTTCGC 60.461 55.000 10.71 0.00 0.00 4.70
4744 11625 1.287425 GTCCGAGGCTAATTGGTTCG 58.713 55.000 9.67 9.67 0.00 3.95
4745 11626 2.396590 TGTCCGAGGCTAATTGGTTC 57.603 50.000 0.00 0.00 0.00 3.62
4746 11627 2.026262 ACATGTCCGAGGCTAATTGGTT 60.026 45.455 0.00 0.00 0.00 3.67
4747 11628 1.559682 ACATGTCCGAGGCTAATTGGT 59.440 47.619 0.00 0.00 0.00 3.67
4748 11629 2.158900 AGACATGTCCGAGGCTAATTGG 60.159 50.000 22.21 0.00 0.00 3.16
4749 11630 3.185246 AGACATGTCCGAGGCTAATTG 57.815 47.619 22.21 0.00 0.00 2.32
4750 11631 3.535561 CAAGACATGTCCGAGGCTAATT 58.464 45.455 22.21 3.87 0.00 1.40
4751 11632 2.743183 GCAAGACATGTCCGAGGCTAAT 60.743 50.000 22.21 0.00 0.00 1.73
4752 11633 1.405526 GCAAGACATGTCCGAGGCTAA 60.406 52.381 22.21 0.00 0.00 3.09
4753 11634 0.175760 GCAAGACATGTCCGAGGCTA 59.824 55.000 22.21 0.00 0.00 3.93
4754 11635 1.078848 GCAAGACATGTCCGAGGCT 60.079 57.895 22.21 0.00 0.00 4.58
4755 11636 2.456119 CGCAAGACATGTCCGAGGC 61.456 63.158 22.21 17.90 43.02 4.70
4756 11637 0.670546 AACGCAAGACATGTCCGAGG 60.671 55.000 23.83 14.15 43.62 4.63
4757 11638 1.148310 AAACGCAAGACATGTCCGAG 58.852 50.000 23.83 18.47 43.62 4.63
4758 11639 1.529438 GAAAACGCAAGACATGTCCGA 59.471 47.619 23.83 0.00 43.62 4.55
4759 11640 1.262950 TGAAAACGCAAGACATGTCCG 59.737 47.619 22.21 19.70 43.62 4.79
4760 11641 3.003275 TCTTGAAAACGCAAGACATGTCC 59.997 43.478 22.21 6.38 46.73 4.02
4805 11689 2.091333 AGGACAAAGGTGGGTTTCATGT 60.091 45.455 0.00 0.00 0.00 3.21
4817 11701 6.231211 ACATTACTGTGTTCTAGGACAAAGG 58.769 40.000 23.08 10.63 38.86 3.11
4832 11716 4.323562 GGGGTAGAAGCAGAACATTACTGT 60.324 45.833 0.00 0.00 37.64 3.55
4833 11717 4.192317 GGGGTAGAAGCAGAACATTACTG 58.808 47.826 0.00 0.00 38.27 2.74
4834 11718 3.844211 TGGGGTAGAAGCAGAACATTACT 59.156 43.478 0.00 0.00 0.00 2.24
4903 11802 7.830739 AGAATAATGCTTTGGTTTTAGTCTGG 58.169 34.615 0.00 0.00 30.42 3.86
4927 11826 2.289569 ACTTGAGGAAGCTGCAAGAGAG 60.290 50.000 19.44 3.67 41.03 3.20
4993 11904 3.368948 CCCTAGTTTTCCTCTCTGCTGTC 60.369 52.174 0.00 0.00 0.00 3.51
4999 11910 4.689062 TGATCACCCTAGTTTTCCTCTCT 58.311 43.478 0.00 0.00 0.00 3.10
5014 11925 5.642919 GCTCTAATGGAATGAGATGATCACC 59.357 44.000 0.00 0.00 41.91 4.02
5016 11927 5.476614 CGCTCTAATGGAATGAGATGATCA 58.523 41.667 0.00 0.00 43.70 2.92
5132 12044 8.760980 ACTTATAGCTAGAGACAAGATGAAGT 57.239 34.615 12.46 0.00 0.00 3.01
5164 12076 9.365906 ACATATATAATATCCTCTCCTCTGCTG 57.634 37.037 0.00 0.00 0.00 4.41
5221 12133 1.142262 ACGTTTTTGGCACTAGGGAGT 59.858 47.619 0.00 0.00 35.80 3.85
5222 12134 1.892209 ACGTTTTTGGCACTAGGGAG 58.108 50.000 0.00 0.00 0.00 4.30
5223 12135 2.158726 AGAACGTTTTTGGCACTAGGGA 60.159 45.455 0.46 0.00 0.00 4.20
5224 12136 2.227194 AGAACGTTTTTGGCACTAGGG 58.773 47.619 0.46 0.00 0.00 3.53
5225 12137 3.982576 AAGAACGTTTTTGGCACTAGG 57.017 42.857 0.46 0.00 0.00 3.02
5226 12138 9.698617 GTAATATAAGAACGTTTTTGGCACTAG 57.301 33.333 13.87 0.00 0.00 2.57
5227 12139 8.382130 CGTAATATAAGAACGTTTTTGGCACTA 58.618 33.333 13.87 0.00 32.16 2.74
5228 12140 7.238571 CGTAATATAAGAACGTTTTTGGCACT 58.761 34.615 13.87 0.00 32.16 4.40
5229 12141 6.466730 CCGTAATATAAGAACGTTTTTGGCAC 59.533 38.462 13.87 4.53 34.90 5.01
5230 12142 6.403418 CCCGTAATATAAGAACGTTTTTGGCA 60.403 38.462 13.87 0.01 34.90 4.92
5231 12143 5.967088 CCCGTAATATAAGAACGTTTTTGGC 59.033 40.000 13.87 0.00 34.90 4.52
5232 12144 7.182089 GTCCCGTAATATAAGAACGTTTTTGG 58.818 38.462 13.87 4.87 34.90 3.28
5233 12145 6.896088 CGTCCCGTAATATAAGAACGTTTTTG 59.104 38.462 13.87 0.00 34.90 2.44
5234 12146 6.035975 CCGTCCCGTAATATAAGAACGTTTTT 59.964 38.462 9.22 9.22 34.90 1.94
5235 12147 5.519927 CCGTCCCGTAATATAAGAACGTTTT 59.480 40.000 0.46 0.00 34.90 2.43
5236 12148 5.043248 CCGTCCCGTAATATAAGAACGTTT 58.957 41.667 0.46 0.00 34.90 3.60
5237 12149 4.338118 TCCGTCCCGTAATATAAGAACGTT 59.662 41.667 0.00 0.00 34.90 3.99
5238 12150 3.882888 TCCGTCCCGTAATATAAGAACGT 59.117 43.478 0.00 0.00 34.90 3.99
5239 12151 4.470462 CTCCGTCCCGTAATATAAGAACG 58.530 47.826 0.00 0.00 36.42 3.95
5240 12152 4.321527 CCCTCCGTCCCGTAATATAAGAAC 60.322 50.000 0.00 0.00 0.00 3.01
5241 12153 3.828451 CCCTCCGTCCCGTAATATAAGAA 59.172 47.826 0.00 0.00 0.00 2.52
5242 12154 3.074390 TCCCTCCGTCCCGTAATATAAGA 59.926 47.826 0.00 0.00 0.00 2.10
5243 12155 3.424703 TCCCTCCGTCCCGTAATATAAG 58.575 50.000 0.00 0.00 0.00 1.73
5244 12156 3.181429 ACTCCCTCCGTCCCGTAATATAA 60.181 47.826 0.00 0.00 0.00 0.98
5245 12157 2.376518 ACTCCCTCCGTCCCGTAATATA 59.623 50.000 0.00 0.00 0.00 0.86
5246 12158 1.146566 ACTCCCTCCGTCCCGTAATAT 59.853 52.381 0.00 0.00 0.00 1.28
5247 12159 0.552848 ACTCCCTCCGTCCCGTAATA 59.447 55.000 0.00 0.00 0.00 0.98
5248 12160 0.552848 TACTCCCTCCGTCCCGTAAT 59.447 55.000 0.00 0.00 0.00 1.89
5249 12161 0.394352 GTACTCCCTCCGTCCCGTAA 60.394 60.000 0.00 0.00 0.00 3.18
5250 12162 1.224592 GTACTCCCTCCGTCCCGTA 59.775 63.158 0.00 0.00 0.00 4.02
5251 12163 2.044551 GTACTCCCTCCGTCCCGT 60.045 66.667 0.00 0.00 0.00 5.28
5252 12164 2.832201 GGTACTCCCTCCGTCCCG 60.832 72.222 0.00 0.00 0.00 5.14
5253 12165 0.186873 TATGGTACTCCCTCCGTCCC 59.813 60.000 0.00 0.00 0.00 4.46
5254 12166 2.305858 ATATGGTACTCCCTCCGTCC 57.694 55.000 0.00 0.00 0.00 4.79
5255 12167 3.190118 CGTTATATGGTACTCCCTCCGTC 59.810 52.174 0.00 0.00 0.00 4.79
5256 12168 3.152341 CGTTATATGGTACTCCCTCCGT 58.848 50.000 0.00 0.00 0.00 4.69
5257 12169 3.190118 GTCGTTATATGGTACTCCCTCCG 59.810 52.174 0.00 0.00 0.00 4.63
5258 12170 4.022503 GTGTCGTTATATGGTACTCCCTCC 60.023 50.000 0.00 0.00 0.00 4.30
5259 12171 4.320057 CGTGTCGTTATATGGTACTCCCTC 60.320 50.000 0.00 0.00 0.00 4.30
5260 12172 3.567164 CGTGTCGTTATATGGTACTCCCT 59.433 47.826 0.00 0.00 0.00 4.20
5261 12173 3.304928 CCGTGTCGTTATATGGTACTCCC 60.305 52.174 0.00 0.00 0.00 4.30
5262 12174 3.565482 TCCGTGTCGTTATATGGTACTCC 59.435 47.826 0.00 0.00 0.00 3.85
5263 12175 4.818534 TCCGTGTCGTTATATGGTACTC 57.181 45.455 0.00 0.00 0.00 2.59
5296 12208 8.409371 TCTATCATATGTCTCACTTGTTCAGTC 58.591 37.037 1.90 0.00 30.92 3.51
5297 12209 8.298729 TCTATCATATGTCTCACTTGTTCAGT 57.701 34.615 1.90 0.00 35.35 3.41
5298 12210 7.381948 GCTCTATCATATGTCTCACTTGTTCAG 59.618 40.741 1.90 0.00 0.00 3.02
5299 12211 7.147846 TGCTCTATCATATGTCTCACTTGTTCA 60.148 37.037 1.90 0.00 0.00 3.18
5300 12212 7.205992 TGCTCTATCATATGTCTCACTTGTTC 58.794 38.462 1.90 0.00 0.00 3.18
5301 12213 7.117285 TGCTCTATCATATGTCTCACTTGTT 57.883 36.000 1.90 0.00 0.00 2.83
5302 12214 6.721704 TGCTCTATCATATGTCTCACTTGT 57.278 37.500 1.90 0.00 0.00 3.16
5335 12247 4.490547 AGAGATGAGATGAAGGATCCCT 57.509 45.455 8.55 0.00 33.87 4.20
5369 12281 6.690194 ACATATCATCTTCTTTGCTCAACC 57.310 37.500 0.00 0.00 0.00 3.77
5393 12305 9.130661 CATCTTAACATCTTCTCTCTTCCTCTA 57.869 37.037 0.00 0.00 0.00 2.43
5413 12326 5.387788 CATTGTGGATCCCCATTCATCTTA 58.612 41.667 9.90 0.00 45.68 2.10
5424 12337 2.238646 TGACAGTACCATTGTGGATCCC 59.761 50.000 9.90 0.85 40.96 3.85
5432 12345 5.008019 GGCATCACTAATGACAGTACCATTG 59.992 44.000 6.20 0.00 43.58 2.82
5433 12346 5.104360 AGGCATCACTAATGACAGTACCATT 60.104 40.000 0.00 0.00 46.91 3.16
5434 12347 4.410228 AGGCATCACTAATGACAGTACCAT 59.590 41.667 0.00 0.00 46.91 3.55
5435 12348 3.774766 AGGCATCACTAATGACAGTACCA 59.225 43.478 0.00 0.00 46.91 3.25
5436 12349 4.408182 AGGCATCACTAATGACAGTACC 57.592 45.455 0.00 0.00 46.91 3.34
5437 12350 5.419542 TGAAGGCATCACTAATGACAGTAC 58.580 41.667 0.00 0.00 46.91 2.73
5438 12351 5.675684 TGAAGGCATCACTAATGACAGTA 57.324 39.130 0.00 0.00 46.91 2.74
5439 12352 4.558226 TGAAGGCATCACTAATGACAGT 57.442 40.909 0.00 0.00 46.91 3.55
5450 12363 3.998913 TCTATTGGTGTGAAGGCATCA 57.001 42.857 0.00 0.00 35.05 3.07
5451 12364 4.202441 ACATCTATTGGTGTGAAGGCATC 58.798 43.478 0.00 0.00 0.00 3.91
5452 12365 4.240881 ACATCTATTGGTGTGAAGGCAT 57.759 40.909 0.00 0.00 0.00 4.40
5453 12366 3.719268 ACATCTATTGGTGTGAAGGCA 57.281 42.857 0.00 0.00 0.00 4.75
5454 12367 4.035675 GCTTACATCTATTGGTGTGAAGGC 59.964 45.833 3.11 0.00 0.00 4.35
5455 12368 5.431765 AGCTTACATCTATTGGTGTGAAGG 58.568 41.667 3.11 0.00 0.00 3.46
5456 12369 6.992063 AAGCTTACATCTATTGGTGTGAAG 57.008 37.500 0.00 4.83 0.00 3.02
5457 12370 6.349280 GCAAAGCTTACATCTATTGGTGTGAA 60.349 38.462 0.00 0.00 0.00 3.18
5458 12371 5.123820 GCAAAGCTTACATCTATTGGTGTGA 59.876 40.000 0.00 0.00 0.00 3.58
5459 12372 5.335127 GCAAAGCTTACATCTATTGGTGTG 58.665 41.667 0.00 0.00 0.00 3.82
5460 12373 4.094887 CGCAAAGCTTACATCTATTGGTGT 59.905 41.667 0.00 0.00 0.00 4.16
5461 12374 4.496341 CCGCAAAGCTTACATCTATTGGTG 60.496 45.833 0.00 0.00 0.00 4.17
5462 12375 3.627577 CCGCAAAGCTTACATCTATTGGT 59.372 43.478 0.00 0.00 0.00 3.67
5463 12376 3.627577 ACCGCAAAGCTTACATCTATTGG 59.372 43.478 0.00 0.00 0.00 3.16
5464 12377 4.882671 ACCGCAAAGCTTACATCTATTG 57.117 40.909 0.00 0.00 0.00 1.90
5465 12378 4.096382 CCAACCGCAAAGCTTACATCTATT 59.904 41.667 0.00 0.00 0.00 1.73
5466 12379 3.627577 CCAACCGCAAAGCTTACATCTAT 59.372 43.478 0.00 0.00 0.00 1.98
5467 12380 3.006940 CCAACCGCAAAGCTTACATCTA 58.993 45.455 0.00 0.00 0.00 1.98
5468 12381 1.812571 CCAACCGCAAAGCTTACATCT 59.187 47.619 0.00 0.00 0.00 2.90
5469 12382 1.539827 ACCAACCGCAAAGCTTACATC 59.460 47.619 0.00 0.00 0.00 3.06
5470 12383 1.539827 GACCAACCGCAAAGCTTACAT 59.460 47.619 0.00 0.00 0.00 2.29
5471 12384 0.948678 GACCAACCGCAAAGCTTACA 59.051 50.000 0.00 0.00 0.00 2.41
5472 12385 1.197036 GAGACCAACCGCAAAGCTTAC 59.803 52.381 0.00 0.00 0.00 2.34
5473 12386 1.202710 TGAGACCAACCGCAAAGCTTA 60.203 47.619 0.00 0.00 0.00 3.09
5474 12387 0.465460 TGAGACCAACCGCAAAGCTT 60.465 50.000 0.00 0.00 0.00 3.74
5475 12388 0.250901 ATGAGACCAACCGCAAAGCT 60.251 50.000 0.00 0.00 0.00 3.74
5476 12389 0.109597 CATGAGACCAACCGCAAAGC 60.110 55.000 0.00 0.00 0.00 3.51
5477 12390 1.522668 TCATGAGACCAACCGCAAAG 58.477 50.000 0.00 0.00 0.00 2.77
5478 12391 1.606668 GTTCATGAGACCAACCGCAAA 59.393 47.619 0.00 0.00 0.00 3.68
5479 12392 1.234821 GTTCATGAGACCAACCGCAA 58.765 50.000 0.00 0.00 0.00 4.85
5480 12393 0.605319 GGTTCATGAGACCAACCGCA 60.605 55.000 17.20 0.00 30.63 5.69
5481 12394 0.605319 TGGTTCATGAGACCAACCGC 60.605 55.000 20.58 0.00 42.30 5.68
5482 12395 1.156736 GTGGTTCATGAGACCAACCG 58.843 55.000 23.00 0.00 42.30 4.44
5483 12396 2.568623 AGTGGTTCATGAGACCAACC 57.431 50.000 23.00 15.99 40.16 3.77
5484 12397 4.894784 TCTAAGTGGTTCATGAGACCAAC 58.105 43.478 23.00 18.18 35.05 3.77
5485 12398 4.563580 GCTCTAAGTGGTTCATGAGACCAA 60.564 45.833 23.00 12.44 35.05 3.67
5486 12399 3.055819 GCTCTAAGTGGTTCATGAGACCA 60.056 47.826 19.56 19.56 0.00 4.02
5487 12400 3.055819 TGCTCTAAGTGGTTCATGAGACC 60.056 47.826 15.94 15.94 0.00 3.85
5488 12401 4.193826 TGCTCTAAGTGGTTCATGAGAC 57.806 45.455 0.00 0.00 0.00 3.36
5489 12402 4.284490 AGTTGCTCTAAGTGGTTCATGAGA 59.716 41.667 0.00 0.00 0.00 3.27
5490 12403 4.573900 AGTTGCTCTAAGTGGTTCATGAG 58.426 43.478 0.00 0.00 0.00 2.90
5491 12404 4.623932 AGTTGCTCTAAGTGGTTCATGA 57.376 40.909 0.00 0.00 0.00 3.07
5492 12405 5.724328 TCTAGTTGCTCTAAGTGGTTCATG 58.276 41.667 0.00 0.00 0.00 3.07
5493 12406 6.552445 ATCTAGTTGCTCTAAGTGGTTCAT 57.448 37.500 0.00 0.00 0.00 2.57
5494 12407 7.201920 GGATATCTAGTTGCTCTAAGTGGTTCA 60.202 40.741 2.05 0.00 0.00 3.18
5495 12408 7.014808 AGGATATCTAGTTGCTCTAAGTGGTTC 59.985 40.741 2.05 0.00 0.00 3.62
5496 12409 6.841755 AGGATATCTAGTTGCTCTAAGTGGTT 59.158 38.462 2.05 0.00 0.00 3.67
5497 12410 6.377912 AGGATATCTAGTTGCTCTAAGTGGT 58.622 40.000 2.05 0.00 0.00 4.16
5498 12411 6.909550 AGGATATCTAGTTGCTCTAAGTGG 57.090 41.667 2.05 0.00 0.00 4.00
5499 12412 7.946207 TCAAGGATATCTAGTTGCTCTAAGTG 58.054 38.462 2.05 0.00 0.00 3.16
5500 12413 8.540507 TTCAAGGATATCTAGTTGCTCTAAGT 57.459 34.615 2.05 0.00 0.00 2.24
5501 12414 9.823647 TTTTCAAGGATATCTAGTTGCTCTAAG 57.176 33.333 2.05 0.00 0.00 2.18
5503 12416 9.601217 GTTTTTCAAGGATATCTAGTTGCTCTA 57.399 33.333 2.05 0.00 0.00 2.43
5504 12417 8.325046 AGTTTTTCAAGGATATCTAGTTGCTCT 58.675 33.333 2.05 0.00 0.00 4.09
5505 12418 8.499403 AGTTTTTCAAGGATATCTAGTTGCTC 57.501 34.615 2.05 0.00 0.00 4.26
5506 12419 9.959721 TTAGTTTTTCAAGGATATCTAGTTGCT 57.040 29.630 2.05 0.72 0.00 3.91
5507 12420 9.989869 GTTAGTTTTTCAAGGATATCTAGTTGC 57.010 33.333 2.05 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.