Multiple sequence alignment - TraesCS5B01G037100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G037100 chr5B 100.000 5122 0 0 1 5122 41271205 41276326 0.000000e+00 9459.0
1 TraesCS5B01G037100 chr5B 80.785 3237 523 65 1022 4193 41085169 41088371 0.000000e+00 2440.0
2 TraesCS5B01G037100 chr5B 92.015 263 19 2 741 1003 312912177 312912437 8.100000e-98 368.0
3 TraesCS5B01G037100 chr5B 76.407 551 109 17 1426 1963 678256062 678255520 1.400000e-70 278.0
4 TraesCS5B01G037100 chr5D 85.932 3220 379 45 1000 4187 43406553 43409730 0.000000e+00 3369.0
5 TraesCS5B01G037100 chr5D 81.223 3238 508 68 1022 4193 43317109 43320312 0.000000e+00 2519.0
6 TraesCS5B01G037100 chr5D 78.082 3212 573 79 1022 4173 537631496 537634636 0.000000e+00 1910.0
7 TraesCS5B01G037100 chr5D 94.872 741 23 5 1 741 43405799 43406524 0.000000e+00 1144.0
8 TraesCS5B01G037100 chr5D 79.801 1609 272 37 1000 2575 43748648 43750236 0.000000e+00 1122.0
9 TraesCS5B01G037100 chr5D 79.681 1565 283 16 2534 4068 43750279 43751838 0.000000e+00 1096.0
10 TraesCS5B01G037100 chr5D 94.518 602 26 4 4268 4867 43411931 43412527 0.000000e+00 922.0
11 TraesCS5B01G037100 chr5D 96.250 400 12 1 3814 4213 43411112 43411508 0.000000e+00 652.0
12 TraesCS5B01G037100 chr5D 84.046 608 77 12 145 741 43748021 43748619 7.440000e-158 568.0
13 TraesCS5B01G037100 chr5D 79.331 658 82 19 4508 5120 43409867 43410515 3.690000e-111 412.0
14 TraesCS5B01G037100 chr5D 78.730 630 111 17 1 626 537630744 537631354 2.870000e-107 399.0
15 TraesCS5B01G037100 chr5D 91.221 262 21 2 742 1003 2749085 2748826 6.310000e-94 355.0
16 TraesCS5B01G037100 chr5D 77.323 538 62 30 4637 5122 43754595 43755124 3.930000e-66 263.0
17 TraesCS5B01G037100 chr5D 84.804 204 21 5 3615 3817 43410844 43411038 4.050000e-46 196.0
18 TraesCS5B01G037100 chr5D 94.444 72 4 0 4209 4280 43411845 43411916 1.510000e-20 111.0
19 TraesCS5B01G037100 chr5A 88.721 2456 248 7 1000 3453 33180739 33183167 0.000000e+00 2974.0
20 TraesCS5B01G037100 chr5A 97.166 741 21 0 1 741 33179970 33180710 0.000000e+00 1253.0
21 TraesCS5B01G037100 chr5A 89.618 655 45 9 4209 4862 33185542 33186174 0.000000e+00 811.0
22 TraesCS5B01G037100 chr5A 94.072 388 17 4 3809 4195 33185104 33185486 7.390000e-163 584.0
23 TraesCS5B01G037100 chr5A 78.841 690 112 21 3529 4194 33183201 33183880 7.880000e-118 435.0
24 TraesCS5B01G037100 chr5A 77.459 732 107 35 4419 5122 33183940 33184641 8.040000e-103 385.0
25 TraesCS5B01G037100 chr5A 84.302 172 21 5 4949 5119 33186203 33186369 4.100000e-36 163.0
26 TraesCS5B01G037100 chr5A 84.127 63 10 0 3705 3767 33185043 33185105 1.540000e-05 62.1
27 TraesCS5B01G037100 chr1B 97.026 269 7 1 736 1003 569427173 569426905 7.820000e-123 451.0
28 TraesCS5B01G037100 chr4B 91.985 262 20 1 742 1003 66802938 66802678 2.910000e-97 366.0
29 TraesCS5B01G037100 chr4B 91.221 262 22 1 742 1003 187444243 187444503 6.310000e-94 355.0
30 TraesCS5B01G037100 chr7D 91.667 264 21 1 741 1003 237412577 237412840 1.050000e-96 364.0
31 TraesCS5B01G037100 chr3B 90.441 272 24 2 732 1003 672517805 672518074 1.750000e-94 357.0
32 TraesCS5B01G037100 chr2B 91.538 260 21 1 744 1003 221723502 221723760 1.750000e-94 357.0
33 TraesCS5B01G037100 chr2D 90.672 268 23 2 736 1003 54169141 54169406 6.310000e-94 355.0
34 TraesCS5B01G037100 chr6D 73.181 742 169 15 9 741 426490254 426489534 1.840000e-59 241.0
35 TraesCS5B01G037100 chr3A 82.114 123 14 6 2564 2682 27568320 27568202 1.170000e-16 99.0
36 TraesCS5B01G037100 chr3A 82.114 123 14 6 2564 2682 194476497 194476615 1.170000e-16 99.0
37 TraesCS5B01G037100 chr3A 75.978 179 29 11 2564 2733 27566589 27566416 4.250000e-11 80.5
38 TraesCS5B01G037100 chr3A 75.978 179 29 11 2564 2733 194478214 194478387 4.250000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G037100 chr5B 41271205 41276326 5121 False 9459.000000 9459 100.000000 1 5122 1 chr5B.!!$F2 5121
1 TraesCS5B01G037100 chr5B 41085169 41088371 3202 False 2440.000000 2440 80.785000 1022 4193 1 chr5B.!!$F1 3171
2 TraesCS5B01G037100 chr5B 678255520 678256062 542 True 278.000000 278 76.407000 1426 1963 1 chr5B.!!$R1 537
3 TraesCS5B01G037100 chr5D 43317109 43320312 3203 False 2519.000000 2519 81.223000 1022 4193 1 chr5D.!!$F1 3171
4 TraesCS5B01G037100 chr5D 537630744 537634636 3892 False 1154.500000 1910 78.406000 1 4173 2 chr5D.!!$F4 4172
5 TraesCS5B01G037100 chr5D 43405799 43412527 6728 False 972.285714 3369 90.021571 1 5120 7 chr5D.!!$F2 5119
6 TraesCS5B01G037100 chr5D 43748021 43755124 7103 False 762.250000 1122 80.212750 145 5122 4 chr5D.!!$F3 4977
7 TraesCS5B01G037100 chr5A 33179970 33186369 6399 False 833.387500 2974 86.788250 1 5122 8 chr5A.!!$F1 5121
8 TraesCS5B01G037100 chr6D 426489534 426490254 720 True 241.000000 241 73.181000 9 741 1 chr6D.!!$R1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 798 0.103937 CCGCCTCTCTCCATCAGTTC 59.896 60.0 0.0 0.0 0.0 3.01 F
973 995 0.103937 CCGCCTCTCTCCATCAGTTC 59.896 60.0 0.0 0.0 0.0 3.01 F
975 997 0.103937 GCCTCTCTCCATCAGTTCGG 59.896 60.0 0.0 0.0 0.0 4.30 F
2307 2363 0.393077 GCCTGCGGTGTGTATCCTAT 59.607 55.0 0.0 0.0 0.0 2.57 F
2889 3032 0.539051 AATGCCGAGAACTGAGGGAG 59.461 55.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 2498 0.178921 TCTCAAGACCCTGCAGACCT 60.179 55.0 17.39 5.96 0.00 3.85 R
2811 2951 0.330604 ACTCCGTGGAGCTACTACCA 59.669 55.0 15.80 0.00 45.54 3.25 R
2814 2954 0.815734 GCAACTCCGTGGAGCTACTA 59.184 55.0 15.80 0.00 45.54 1.82 R
3124 3267 0.178964 AATGGTATGGGGGCGGATTG 60.179 55.0 0.00 0.00 0.00 2.67 R
4794 9117 0.037326 TTCTTCCACTAGTGCAGCGG 60.037 55.0 17.86 3.46 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 1.681780 CCACATATCCAGGCGGTGTTT 60.682 52.381 0.00 0.00 0.00 2.83
236 237 4.710167 TCAGGGACGCGGTCGAGA 62.710 66.667 12.47 0.00 39.41 4.04
327 328 2.040412 GTGAATGGGGTTCTCCTCTTGT 59.960 50.000 0.00 0.00 37.72 3.16
352 353 3.567164 AGATGAAGCACAAGTTTGTCAGG 59.433 43.478 0.00 0.00 39.91 3.86
356 357 2.565841 AGCACAAGTTTGTCAGGTCTC 58.434 47.619 0.00 0.00 39.91 3.36
403 410 8.041323 ACTATCAAGAAAATTAGTCACCGTGAT 58.959 33.333 4.13 0.00 0.00 3.06
517 524 2.564947 AGGTTCTTCTACCAGCAGTCAG 59.435 50.000 0.00 0.00 40.82 3.51
530 537 2.487934 GCAGTCAGCAGAAAGTTCAGA 58.512 47.619 0.00 0.00 44.79 3.27
741 763 3.713764 ACTACCTTGGCTCAGAGCATATT 59.286 43.478 24.09 6.40 44.75 1.28
742 764 2.928334 ACCTTGGCTCAGAGCATATTG 58.072 47.619 24.09 10.19 44.75 1.90
743 765 2.240667 ACCTTGGCTCAGAGCATATTGT 59.759 45.455 24.09 10.80 44.75 2.71
744 766 3.285484 CCTTGGCTCAGAGCATATTGTT 58.715 45.455 24.09 0.00 44.75 2.83
746 768 3.632643 TGGCTCAGAGCATATTGTTGA 57.367 42.857 24.09 0.00 44.75 3.18
749 771 3.944015 GGCTCAGAGCATATTGTTGAAGT 59.056 43.478 24.09 0.00 44.75 3.01
750 772 5.118990 GGCTCAGAGCATATTGTTGAAGTA 58.881 41.667 24.09 0.00 44.75 2.24
751 773 5.762218 GGCTCAGAGCATATTGTTGAAGTAT 59.238 40.000 24.09 0.00 44.75 2.12
752 774 6.931281 GGCTCAGAGCATATTGTTGAAGTATA 59.069 38.462 24.09 0.00 44.75 1.47
753 775 7.605691 GGCTCAGAGCATATTGTTGAAGTATAT 59.394 37.037 24.09 0.00 44.75 0.86
754 776 8.997323 GCTCAGAGCATATTGTTGAAGTATATT 58.003 33.333 18.17 0.00 41.89 1.28
756 778 8.777413 TCAGAGCATATTGTTGAAGTATATTGC 58.223 33.333 0.00 0.00 0.00 3.56
757 779 8.019669 CAGAGCATATTGTTGAAGTATATTGCC 58.980 37.037 0.00 0.00 0.00 4.52
758 780 7.175641 AGAGCATATTGTTGAAGTATATTGCCC 59.824 37.037 0.00 0.00 0.00 5.36
759 781 6.072508 AGCATATTGTTGAAGTATATTGCCCG 60.073 38.462 0.00 0.00 0.00 6.13
760 782 4.568152 ATTGTTGAAGTATATTGCCCGC 57.432 40.909 0.00 0.00 0.00 6.13
761 783 2.294074 TGTTGAAGTATATTGCCCGCC 58.706 47.619 0.00 0.00 0.00 6.13
762 784 2.092646 TGTTGAAGTATATTGCCCGCCT 60.093 45.455 0.00 0.00 0.00 5.52
763 785 2.543777 TGAAGTATATTGCCCGCCTC 57.456 50.000 0.00 0.00 0.00 4.70
764 786 2.047061 TGAAGTATATTGCCCGCCTCT 58.953 47.619 0.00 0.00 0.00 3.69
765 787 2.037251 TGAAGTATATTGCCCGCCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
766 788 2.016905 AGTATATTGCCCGCCTCTCT 57.983 50.000 0.00 0.00 0.00 3.10
767 789 1.896465 AGTATATTGCCCGCCTCTCTC 59.104 52.381 0.00 0.00 0.00 3.20
768 790 1.066787 GTATATTGCCCGCCTCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
769 791 0.764369 ATATTGCCCGCCTCTCTCCA 60.764 55.000 0.00 0.00 0.00 3.86
770 792 0.764369 TATTGCCCGCCTCTCTCCAT 60.764 55.000 0.00 0.00 0.00 3.41
771 793 2.049627 ATTGCCCGCCTCTCTCCATC 62.050 60.000 0.00 0.00 0.00 3.51
772 794 3.157252 GCCCGCCTCTCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
773 795 3.136750 CCCGCCTCTCTCCATCAG 58.863 66.667 0.00 0.00 0.00 2.90
774 796 1.760086 CCCGCCTCTCTCCATCAGT 60.760 63.158 0.00 0.00 0.00 3.41
775 797 1.333636 CCCGCCTCTCTCCATCAGTT 61.334 60.000 0.00 0.00 0.00 3.16
776 798 0.103937 CCGCCTCTCTCCATCAGTTC 59.896 60.000 0.00 0.00 0.00 3.01
777 799 0.248825 CGCCTCTCTCCATCAGTTCG 60.249 60.000 0.00 0.00 0.00 3.95
778 800 0.103937 GCCTCTCTCCATCAGTTCGG 59.896 60.000 0.00 0.00 0.00 4.30
779 801 1.769026 CCTCTCTCCATCAGTTCGGA 58.231 55.000 0.00 0.00 0.00 4.55
780 802 1.407258 CCTCTCTCCATCAGTTCGGAC 59.593 57.143 0.00 0.00 0.00 4.79
781 803 2.374184 CTCTCTCCATCAGTTCGGACT 58.626 52.381 0.00 0.00 36.25 3.85
782 804 2.757868 CTCTCTCCATCAGTTCGGACTT 59.242 50.000 0.00 0.00 32.54 3.01
783 805 3.165875 TCTCTCCATCAGTTCGGACTTT 58.834 45.455 0.00 0.00 32.54 2.66
784 806 3.578716 TCTCTCCATCAGTTCGGACTTTT 59.421 43.478 0.00 0.00 32.54 2.27
785 807 3.664107 TCTCCATCAGTTCGGACTTTTG 58.336 45.455 0.00 0.00 32.54 2.44
786 808 2.744202 CTCCATCAGTTCGGACTTTTGG 59.256 50.000 13.60 13.60 36.98 3.28
787 809 2.370519 TCCATCAGTTCGGACTTTTGGA 59.629 45.455 17.13 17.13 39.94 3.53
788 810 3.009033 TCCATCAGTTCGGACTTTTGGAT 59.991 43.478 17.13 4.78 38.50 3.41
789 811 3.127548 CCATCAGTTCGGACTTTTGGATG 59.872 47.826 14.35 13.52 37.46 3.51
790 812 3.762407 TCAGTTCGGACTTTTGGATGA 57.238 42.857 0.00 0.00 32.54 2.92
791 813 3.664107 TCAGTTCGGACTTTTGGATGAG 58.336 45.455 0.00 0.00 32.54 2.90
792 814 3.071023 TCAGTTCGGACTTTTGGATGAGT 59.929 43.478 0.00 0.00 32.54 3.41
793 815 3.815401 CAGTTCGGACTTTTGGATGAGTT 59.185 43.478 0.00 0.00 32.54 3.01
794 816 3.815401 AGTTCGGACTTTTGGATGAGTTG 59.185 43.478 0.00 0.00 29.87 3.16
795 817 2.778299 TCGGACTTTTGGATGAGTTGG 58.222 47.619 0.00 0.00 0.00 3.77
796 818 1.200020 CGGACTTTTGGATGAGTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
797 819 2.519013 GGACTTTTGGATGAGTTGGCT 58.481 47.619 0.00 0.00 0.00 4.75
798 820 2.229784 GGACTTTTGGATGAGTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
799 821 2.229784 GACTTTTGGATGAGTTGGCTGG 59.770 50.000 0.00 0.00 0.00 4.85
800 822 2.158475 ACTTTTGGATGAGTTGGCTGGA 60.158 45.455 0.00 0.00 0.00 3.86
801 823 2.205022 TTTGGATGAGTTGGCTGGAG 57.795 50.000 0.00 0.00 0.00 3.86
802 824 1.067295 TTGGATGAGTTGGCTGGAGT 58.933 50.000 0.00 0.00 0.00 3.85
803 825 1.951209 TGGATGAGTTGGCTGGAGTA 58.049 50.000 0.00 0.00 0.00 2.59
804 826 2.481441 TGGATGAGTTGGCTGGAGTAT 58.519 47.619 0.00 0.00 0.00 2.12
805 827 2.171237 TGGATGAGTTGGCTGGAGTATG 59.829 50.000 0.00 0.00 0.00 2.39
806 828 2.435805 GGATGAGTTGGCTGGAGTATGA 59.564 50.000 0.00 0.00 0.00 2.15
807 829 3.118261 GGATGAGTTGGCTGGAGTATGAA 60.118 47.826 0.00 0.00 0.00 2.57
808 830 4.445448 GGATGAGTTGGCTGGAGTATGAAT 60.445 45.833 0.00 0.00 0.00 2.57
809 831 4.574674 TGAGTTGGCTGGAGTATGAATT 57.425 40.909 0.00 0.00 0.00 2.17
810 832 4.517285 TGAGTTGGCTGGAGTATGAATTC 58.483 43.478 0.00 0.00 0.00 2.17
811 833 4.019411 TGAGTTGGCTGGAGTATGAATTCA 60.019 41.667 11.26 11.26 0.00 2.57
812 834 4.922206 AGTTGGCTGGAGTATGAATTCAA 58.078 39.130 13.09 0.00 0.00 2.69
813 835 5.513233 AGTTGGCTGGAGTATGAATTCAAT 58.487 37.500 13.09 1.32 0.00 2.57
814 836 6.662755 AGTTGGCTGGAGTATGAATTCAATA 58.337 36.000 13.09 3.10 0.00 1.90
815 837 7.293073 AGTTGGCTGGAGTATGAATTCAATAT 58.707 34.615 13.09 0.54 0.00 1.28
816 838 7.230108 AGTTGGCTGGAGTATGAATTCAATATG 59.770 37.037 13.09 1.09 0.00 1.78
817 839 6.005823 TGGCTGGAGTATGAATTCAATATGG 58.994 40.000 13.09 1.60 0.00 2.74
818 840 6.006449 GGCTGGAGTATGAATTCAATATGGT 58.994 40.000 13.09 0.00 0.00 3.55
819 841 7.168219 GGCTGGAGTATGAATTCAATATGGTA 58.832 38.462 13.09 0.00 0.00 3.25
820 842 7.831193 GGCTGGAGTATGAATTCAATATGGTAT 59.169 37.037 13.09 0.00 0.00 2.73
821 843 8.887717 GCTGGAGTATGAATTCAATATGGTATC 58.112 37.037 13.09 2.80 0.00 2.24
822 844 9.948964 CTGGAGTATGAATTCAATATGGTATCA 57.051 33.333 13.09 2.36 0.00 2.15
823 845 9.948964 TGGAGTATGAATTCAATATGGTATCAG 57.051 33.333 13.09 0.00 0.00 2.90
826 848 9.664332 AGTATGAATTCAATATGGTATCAGAGC 57.336 33.333 13.09 0.00 0.00 4.09
835 857 2.111384 TGGTATCAGAGCCAAGAGGTC 58.889 52.381 0.00 0.00 43.67 3.85
854 876 3.725754 TTGAGTTCAAGACCCTGCC 57.274 52.632 0.00 0.00 0.00 4.85
855 877 0.843309 TTGAGTTCAAGACCCTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
856 878 0.843309 TGAGTTCAAGACCCTGCCAA 59.157 50.000 0.00 0.00 0.00 4.52
857 879 1.239347 GAGTTCAAGACCCTGCCAAC 58.761 55.000 0.00 0.00 0.00 3.77
858 880 0.535102 AGTTCAAGACCCTGCCAACG 60.535 55.000 0.00 0.00 0.00 4.10
859 881 1.896660 TTCAAGACCCTGCCAACGC 60.897 57.895 0.00 0.00 0.00 4.84
860 882 2.594303 CAAGACCCTGCCAACGCA 60.594 61.111 0.00 0.00 44.78 5.24
888 910 3.363787 AAAAAGGATTCTGCGGCCT 57.636 47.368 0.00 0.00 0.00 5.19
889 911 2.507407 AAAAAGGATTCTGCGGCCTA 57.493 45.000 0.00 0.00 0.00 3.93
890 912 2.736670 AAAAGGATTCTGCGGCCTAT 57.263 45.000 0.00 0.00 0.00 2.57
891 913 3.857157 AAAAGGATTCTGCGGCCTATA 57.143 42.857 0.00 0.00 0.00 1.31
892 914 4.373156 AAAAGGATTCTGCGGCCTATAT 57.627 40.909 0.00 0.00 0.00 0.86
893 915 5.499004 AAAAGGATTCTGCGGCCTATATA 57.501 39.130 0.00 0.00 0.00 0.86
894 916 5.499004 AAAGGATTCTGCGGCCTATATAA 57.501 39.130 0.00 0.00 0.00 0.98
895 917 5.499004 AAGGATTCTGCGGCCTATATAAA 57.501 39.130 0.00 0.00 0.00 1.40
896 918 5.700402 AGGATTCTGCGGCCTATATAAAT 57.300 39.130 0.00 0.00 0.00 1.40
897 919 6.067217 AGGATTCTGCGGCCTATATAAATT 57.933 37.500 0.00 0.00 0.00 1.82
898 920 6.116126 AGGATTCTGCGGCCTATATAAATTC 58.884 40.000 0.00 0.00 0.00 2.17
899 921 5.297029 GGATTCTGCGGCCTATATAAATTCC 59.703 44.000 0.00 0.00 0.00 3.01
900 922 4.901197 TCTGCGGCCTATATAAATTCCA 57.099 40.909 0.00 0.00 0.00 3.53
901 923 4.575885 TCTGCGGCCTATATAAATTCCAC 58.424 43.478 0.00 0.00 0.00 4.02
902 924 3.331150 TGCGGCCTATATAAATTCCACG 58.669 45.455 0.00 0.00 0.00 4.94
903 925 3.244284 TGCGGCCTATATAAATTCCACGT 60.244 43.478 0.00 0.00 0.00 4.49
904 926 3.370061 GCGGCCTATATAAATTCCACGTC 59.630 47.826 0.00 0.00 0.00 4.34
905 927 4.817517 CGGCCTATATAAATTCCACGTCT 58.182 43.478 0.00 0.00 0.00 4.18
906 928 5.622914 GCGGCCTATATAAATTCCACGTCTA 60.623 44.000 0.00 0.00 0.00 2.59
907 929 6.392354 CGGCCTATATAAATTCCACGTCTAA 58.608 40.000 0.00 0.00 0.00 2.10
908 930 6.530534 CGGCCTATATAAATTCCACGTCTAAG 59.469 42.308 0.00 0.00 0.00 2.18
909 931 7.576287 CGGCCTATATAAATTCCACGTCTAAGA 60.576 40.741 0.00 0.00 0.00 2.10
910 932 7.760340 GGCCTATATAAATTCCACGTCTAAGAG 59.240 40.741 0.00 0.00 0.00 2.85
911 933 7.275999 GCCTATATAAATTCCACGTCTAAGAGC 59.724 40.741 0.00 0.00 0.00 4.09
912 934 8.524487 CCTATATAAATTCCACGTCTAAGAGCT 58.476 37.037 0.00 0.00 0.00 4.09
919 941 8.649973 AATTCCACGTCTAAGAGCTAATTAAG 57.350 34.615 0.00 0.00 0.00 1.85
932 954 4.299978 GCTAATTAAGCCTAGACGTGAGG 58.700 47.826 8.49 8.49 46.25 3.86
933 955 3.821421 AATTAAGCCTAGACGTGAGGG 57.179 47.619 13.64 4.42 34.35 4.30
934 956 1.481871 TTAAGCCTAGACGTGAGGGG 58.518 55.000 13.64 2.79 34.35 4.79
935 957 0.396695 TAAGCCTAGACGTGAGGGGG 60.397 60.000 13.64 1.18 34.35 5.40
954 976 2.956333 GGGGGTGTTGAAGTATATTGCC 59.044 50.000 0.00 0.00 0.00 4.52
955 977 2.956333 GGGGTGTTGAAGTATATTGCCC 59.044 50.000 0.00 0.00 0.00 5.36
956 978 2.616842 GGGTGTTGAAGTATATTGCCCG 59.383 50.000 0.00 0.00 0.00 6.13
957 979 2.032924 GGTGTTGAAGTATATTGCCCGC 59.967 50.000 0.00 0.00 0.00 6.13
958 980 2.032924 GTGTTGAAGTATATTGCCCGCC 59.967 50.000 0.00 0.00 0.00 6.13
959 981 2.092646 TGTTGAAGTATATTGCCCGCCT 60.093 45.455 0.00 0.00 0.00 5.52
960 982 2.543777 TGAAGTATATTGCCCGCCTC 57.456 50.000 0.00 0.00 0.00 4.70
961 983 2.047061 TGAAGTATATTGCCCGCCTCT 58.953 47.619 0.00 0.00 0.00 3.69
962 984 2.037251 TGAAGTATATTGCCCGCCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
963 985 2.016905 AGTATATTGCCCGCCTCTCT 57.983 50.000 0.00 0.00 0.00 3.10
964 986 1.896465 AGTATATTGCCCGCCTCTCTC 59.104 52.381 0.00 0.00 0.00 3.20
965 987 1.066787 GTATATTGCCCGCCTCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
966 988 0.764369 ATATTGCCCGCCTCTCTCCA 60.764 55.000 0.00 0.00 0.00 3.86
967 989 0.764369 TATTGCCCGCCTCTCTCCAT 60.764 55.000 0.00 0.00 0.00 3.41
968 990 2.049627 ATTGCCCGCCTCTCTCCATC 62.050 60.000 0.00 0.00 0.00 3.51
969 991 3.157252 GCCCGCCTCTCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
970 992 3.136750 CCCGCCTCTCTCCATCAG 58.863 66.667 0.00 0.00 0.00 2.90
971 993 1.760086 CCCGCCTCTCTCCATCAGT 60.760 63.158 0.00 0.00 0.00 3.41
972 994 1.333636 CCCGCCTCTCTCCATCAGTT 61.334 60.000 0.00 0.00 0.00 3.16
973 995 0.103937 CCGCCTCTCTCCATCAGTTC 59.896 60.000 0.00 0.00 0.00 3.01
974 996 0.248825 CGCCTCTCTCCATCAGTTCG 60.249 60.000 0.00 0.00 0.00 3.95
975 997 0.103937 GCCTCTCTCCATCAGTTCGG 59.896 60.000 0.00 0.00 0.00 4.30
976 998 1.769026 CCTCTCTCCATCAGTTCGGA 58.231 55.000 0.00 0.00 0.00 4.55
977 999 1.407258 CCTCTCTCCATCAGTTCGGAC 59.593 57.143 0.00 0.00 0.00 4.79
978 1000 2.374184 CTCTCTCCATCAGTTCGGACT 58.626 52.381 0.00 0.00 36.25 3.85
979 1001 2.757868 CTCTCTCCATCAGTTCGGACTT 59.242 50.000 0.00 0.00 32.54 3.01
980 1002 3.165875 TCTCTCCATCAGTTCGGACTTT 58.834 45.455 0.00 0.00 32.54 2.66
981 1003 3.578716 TCTCTCCATCAGTTCGGACTTTT 59.421 43.478 0.00 0.00 32.54 2.27
982 1004 3.664107 TCTCCATCAGTTCGGACTTTTG 58.336 45.455 0.00 0.00 32.54 2.44
983 1005 2.744202 CTCCATCAGTTCGGACTTTTGG 59.256 50.000 13.60 13.60 36.98 3.28
984 1006 2.370519 TCCATCAGTTCGGACTTTTGGA 59.629 45.455 17.13 17.13 39.94 3.53
985 1007 3.009033 TCCATCAGTTCGGACTTTTGGAT 59.991 43.478 17.13 4.78 38.50 3.41
986 1008 3.127548 CCATCAGTTCGGACTTTTGGATG 59.872 47.826 14.35 13.52 37.46 3.51
987 1009 3.762407 TCAGTTCGGACTTTTGGATGA 57.238 42.857 0.00 0.00 32.54 2.92
988 1010 3.664107 TCAGTTCGGACTTTTGGATGAG 58.336 45.455 0.00 0.00 32.54 2.90
989 1011 3.071023 TCAGTTCGGACTTTTGGATGAGT 59.929 43.478 0.00 0.00 32.54 3.41
990 1012 3.815401 CAGTTCGGACTTTTGGATGAGTT 59.185 43.478 0.00 0.00 32.54 3.01
991 1013 3.815401 AGTTCGGACTTTTGGATGAGTTG 59.185 43.478 0.00 0.00 29.87 3.16
992 1014 2.778299 TCGGACTTTTGGATGAGTTGG 58.222 47.619 0.00 0.00 0.00 3.77
993 1015 1.200020 CGGACTTTTGGATGAGTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
994 1016 2.519013 GGACTTTTGGATGAGTTGGCT 58.481 47.619 0.00 0.00 0.00 4.75
995 1017 2.229784 GGACTTTTGGATGAGTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
996 1018 3.149196 GACTTTTGGATGAGTTGGCTGA 58.851 45.455 0.00 0.00 0.00 4.26
997 1019 3.565307 ACTTTTGGATGAGTTGGCTGAA 58.435 40.909 0.00 0.00 0.00 3.02
998 1020 3.571401 ACTTTTGGATGAGTTGGCTGAAG 59.429 43.478 0.00 0.00 0.00 3.02
1001 1023 4.574674 TTGGATGAGTTGGCTGAAGTAT 57.425 40.909 0.00 0.00 0.00 2.12
1139 1161 3.744660 ACCTCAAAGAGAAACTCGCATT 58.255 40.909 0.00 0.00 35.36 3.56
1497 1526 4.290969 CTGAGCATCTGCAAAGCAATATG 58.709 43.478 4.79 8.73 45.16 1.78
1515 1544 6.686378 GCAATATGACACCTGAATACTGGAGA 60.686 42.308 0.00 0.00 38.29 3.71
1669 1704 7.466050 CGCAGGACTATAGATTTGGAAAGAAAC 60.466 40.741 6.78 0.00 0.00 2.78
1695 1730 2.299867 GGTGCAAATGTGGATTGGTTCT 59.700 45.455 0.00 0.00 0.00 3.01
1701 1736 5.105392 GCAAATGTGGATTGGTTCTGGATTA 60.105 40.000 0.00 0.00 0.00 1.75
1734 1778 4.279420 GGCATTCAATCTTTGGAGGATACC 59.721 45.833 0.00 0.00 37.17 2.73
1804 1848 7.660030 ATGAAACCTATAACTTTTGGATGGG 57.340 36.000 0.00 0.00 0.00 4.00
1805 1849 6.795590 TGAAACCTATAACTTTTGGATGGGA 58.204 36.000 0.00 0.00 0.00 4.37
1806 1850 7.242359 TGAAACCTATAACTTTTGGATGGGAA 58.758 34.615 0.00 0.00 0.00 3.97
1886 1930 3.378112 ACCGGTGAATGTGCAAGAATATG 59.622 43.478 6.12 0.00 0.00 1.78
2015 2059 8.454293 AAGAATCTACGCACTATTATCATTCG 57.546 34.615 0.00 0.00 0.00 3.34
2017 2061 7.539022 AGAATCTACGCACTATTATCATTCGTG 59.461 37.037 0.00 0.00 0.00 4.35
2027 2071 4.801330 TTATCATTCGTGATATCCCGCT 57.199 40.909 2.39 0.00 31.65 5.52
2039 2083 4.515191 TGATATCCCGCTAGTTGAAAATGC 59.485 41.667 0.00 0.00 0.00 3.56
2094 2138 5.730550 ACCTCAAAATCACTGCGACTATTA 58.269 37.500 0.00 0.00 0.00 0.98
2095 2139 6.349300 ACCTCAAAATCACTGCGACTATTAT 58.651 36.000 0.00 0.00 0.00 1.28
2114 2158 9.772973 ACTATTATATGCAGAATTACGAAACCA 57.227 29.630 0.00 0.00 0.00 3.67
2127 2171 2.428890 ACGAAACCAATCCTGTTTTGCA 59.571 40.909 0.00 0.00 39.61 4.08
2128 2172 3.118956 ACGAAACCAATCCTGTTTTGCAA 60.119 39.130 0.00 0.00 39.61 4.08
2167 2217 9.817809 ACTTAAAACATCTTCGCTATATCTTCA 57.182 29.630 0.00 0.00 0.00 3.02
2179 2229 7.689299 TCGCTATATCTTCATGAGTTCGATAG 58.311 38.462 0.00 2.98 0.00 2.08
2224 2274 6.142817 GTCGCAAAACTTTATCACTTGATGT 58.857 36.000 1.77 0.00 36.05 3.06
2240 2296 5.838521 ACTTGATGTTCCTTTACCATGGTTT 59.161 36.000 25.38 0.23 0.00 3.27
2297 2353 1.526575 AACCTTGAATGCCTGCGGTG 61.527 55.000 0.00 0.00 0.00 4.94
2307 2363 0.393077 GCCTGCGGTGTGTATCCTAT 59.607 55.000 0.00 0.00 0.00 2.57
2308 2364 1.873903 GCCTGCGGTGTGTATCCTATG 60.874 57.143 0.00 0.00 0.00 2.23
2309 2365 1.270305 CCTGCGGTGTGTATCCTATGG 60.270 57.143 0.00 0.00 0.00 2.74
2334 2390 5.221803 TGGTGTGCATGGATTTGGTAATTTT 60.222 36.000 0.00 0.00 0.00 1.82
2337 2393 5.248020 TGTGCATGGATTTGGTAATTTTCCT 59.752 36.000 0.00 0.00 0.00 3.36
2338 2394 5.581874 GTGCATGGATTTGGTAATTTTCCTG 59.418 40.000 0.00 0.00 0.00 3.86
2401 2457 5.129634 TGGTAGAAGAAAGAACATGCAACA 58.870 37.500 0.00 0.00 0.00 3.33
2435 2491 5.965033 ATTGGGAGCTTAAGAGATCTTCA 57.035 39.130 6.67 1.98 38.37 3.02
2442 2498 8.153550 GGGAGCTTAAGAGATCTTCATGAATTA 58.846 37.037 8.96 0.73 38.37 1.40
2489 2545 8.993121 TGTTAAGAATTGTGAAGAAGCTAAGAG 58.007 33.333 0.00 0.00 0.00 2.85
2524 2580 6.136541 AGGAAAAACAACATCTCAACTCAC 57.863 37.500 0.00 0.00 0.00 3.51
2529 2585 9.387123 GAAAAACAACATCTCAACTCACTATTC 57.613 33.333 0.00 0.00 0.00 1.75
2568 2624 6.017852 CACCTGATCAAATCATGACAGATGAG 60.018 42.308 9.65 10.44 41.93 2.90
2670 2810 3.953542 TGGATAGAGGACAGCTCTGTA 57.046 47.619 2.07 0.00 45.05 2.74
2700 2840 6.436027 TCTGGTATCTCTCAGGTTGATAAGT 58.564 40.000 0.00 0.00 0.00 2.24
2706 2846 5.809001 TCTCTCAGGTTGATAAGTTGCATT 58.191 37.500 0.00 0.00 0.00 3.56
2745 2885 3.947834 CCTCTCTTGGCGATTTGGTATTT 59.052 43.478 0.00 0.00 0.00 1.40
2752 2892 5.461032 TGGCGATTTGGTATTTTTGAAGT 57.539 34.783 0.00 0.00 0.00 3.01
2774 2914 3.887621 TCTAATGTTGGAGGACCTTCG 57.112 47.619 0.00 0.00 37.04 3.79
2811 2951 6.436847 AGATTGGTCGATCATCTGATATGTCT 59.563 38.462 0.00 0.00 34.37 3.41
2812 2952 5.382618 TGGTCGATCATCTGATATGTCTG 57.617 43.478 0.00 0.00 34.37 3.51
2814 2954 4.219507 GGTCGATCATCTGATATGTCTGGT 59.780 45.833 0.00 0.00 34.37 4.00
2847 2990 3.740115 GGAGTTGCTGTTACCTCAAAGA 58.260 45.455 0.00 0.00 0.00 2.52
2851 2994 4.816925 AGTTGCTGTTACCTCAAAGACTTC 59.183 41.667 0.00 0.00 0.00 3.01
2878 3021 4.963276 TTGGAAGTAAATGAATGCCGAG 57.037 40.909 0.00 0.00 0.00 4.63
2889 3032 0.539051 AATGCCGAGAACTGAGGGAG 59.461 55.000 0.00 0.00 0.00 4.30
2916 3059 4.282195 CCTATTCTACCTCCAAGCCTAGTG 59.718 50.000 0.00 0.00 0.00 2.74
2920 3063 0.977395 ACCTCCAAGCCTAGTGTCAC 59.023 55.000 0.00 0.00 0.00 3.67
2925 3068 2.906389 TCCAAGCCTAGTGTCACTGAAT 59.094 45.455 16.03 0.00 0.00 2.57
2929 3072 6.040955 TCCAAGCCTAGTGTCACTGAATATAG 59.959 42.308 16.03 3.59 0.00 1.31
2964 3107 7.110155 GTCTGACCAAACTTCCTATTATTGGA 58.890 38.462 9.63 0.00 42.46 3.53
2978 3121 6.874134 CCTATTATTGGAAAGATACCGAGTGG 59.126 42.308 0.00 0.00 42.84 4.00
2979 3122 5.943349 TTATTGGAAAGATACCGAGTGGA 57.057 39.130 0.00 0.00 39.21 4.02
3012 3155 6.888632 AGCCAAAATCATCTAAGTTGACTGAT 59.111 34.615 0.00 0.00 0.00 2.90
3073 3216 2.038952 GGGAGCCTTTTGGAGCAAAAAT 59.961 45.455 0.00 0.00 41.77 1.82
3091 3234 1.742761 ATTGCACATGGGAACTCTCG 58.257 50.000 0.00 0.00 0.00 4.04
3092 3235 0.684535 TTGCACATGGGAACTCTCGA 59.315 50.000 0.00 0.00 0.00 4.04
3109 3252 7.540474 ACTCTCGATGCCCTAAGAATTAATA 57.460 36.000 0.00 0.00 0.00 0.98
3115 3258 8.999431 TCGATGCCCTAAGAATTAATAATTGTC 58.001 33.333 2.58 0.00 0.00 3.18
3118 3261 8.463930 TGCCCTAAGAATTAATAATTGTCAGG 57.536 34.615 2.58 4.16 0.00 3.86
3126 3269 9.412460 AGAATTAATAATTGTCAGGATCTGCAA 57.588 29.630 2.58 7.03 34.25 4.08
3132 3275 1.146930 TCAGGATCTGCAATCCGCC 59.853 57.895 17.02 3.32 42.87 6.13
3133 3276 1.895707 CAGGATCTGCAATCCGCCC 60.896 63.158 17.02 1.98 42.87 6.13
3153 3296 4.164030 GCCCCCATACCATTTGAAGAAATT 59.836 41.667 0.00 0.00 28.65 1.82
3234 3380 3.119388 GCAAAGATAAGCTTGTGCCATCA 60.119 43.478 9.86 0.00 40.80 3.07
3249 3395 4.702131 GTGCCATCATCACTAAGAAACCTT 59.298 41.667 0.00 0.00 0.00 3.50
3258 3404 8.822805 TCATCACTAAGAAACCTTACTATTGGT 58.177 33.333 0.00 0.00 38.35 3.67
3290 3436 3.314693 ACCTGGAACTTCCACTACTTGA 58.685 45.455 6.39 0.00 42.67 3.02
3297 3443 4.857509 ACTTCCACTACTTGAGTCACTC 57.142 45.455 0.00 0.00 35.64 3.51
3300 3446 2.891580 TCCACTACTTGAGTCACTCCAC 59.108 50.000 1.24 0.00 35.64 4.02
3321 3467 2.616256 CCTGCTCACCAACTTATCTGCA 60.616 50.000 0.00 0.00 0.00 4.41
3324 3470 3.077359 GCTCACCAACTTATCTGCACTT 58.923 45.455 0.00 0.00 0.00 3.16
3326 3472 4.878397 GCTCACCAACTTATCTGCACTTAT 59.122 41.667 0.00 0.00 0.00 1.73
3354 3500 3.655810 CTGCTCGAGCCTGGTGTCC 62.656 68.421 33.23 4.42 41.18 4.02
3390 3536 5.362430 GGATGTATTCAAGAGTCTCAGGTCT 59.638 44.000 1.94 0.00 0.00 3.85
3465 3611 2.700897 CGGATCACTTCCAACCCTCTAT 59.299 50.000 0.00 0.00 45.78 1.98
3467 3613 4.384208 CGGATCACTTCCAACCCTCTATTT 60.384 45.833 0.00 0.00 45.78 1.40
3473 3619 6.500751 TCACTTCCAACCCTCTATTTCTTAGT 59.499 38.462 0.00 0.00 0.00 2.24
3477 3623 9.907229 CTTCCAACCCTCTATTTCTTAGTAATT 57.093 33.333 0.00 0.00 0.00 1.40
3487 3633 8.358148 TCTATTTCTTAGTAATTAGAGGGTGCG 58.642 37.037 0.00 0.00 0.00 5.34
3549 3713 0.951040 CTGGTTCTGGTGGCGAAGAC 60.951 60.000 0.00 0.00 0.00 3.01
3570 3734 3.402681 CATCTGGTGGAGCCCGGT 61.403 66.667 0.00 0.00 36.04 5.28
3587 3751 3.357166 CGGTAGCTCACTGGAGATAAC 57.643 52.381 0.00 0.00 43.14 1.89
3590 3754 5.086104 GGTAGCTCACTGGAGATAACAAA 57.914 43.478 0.00 0.00 46.53 2.83
3595 3759 5.879223 AGCTCACTGGAGATAACAAATCTTG 59.121 40.000 0.00 0.00 44.26 3.02
3613 3777 0.107703 TGACATTGATCTGCCGTCCC 60.108 55.000 0.00 0.00 0.00 4.46
3630 3794 1.378119 CCTGCTGCATCTTGAGCCA 60.378 57.895 1.31 0.00 34.04 4.75
3666 3830 3.606153 GCCGCACCGAATATTTGTGTATC 60.606 47.826 16.04 6.15 32.62 2.24
3673 3837 8.126074 GCACCGAATATTTGTGTATCAATAACA 58.874 33.333 16.04 0.00 35.84 2.41
3674 3838 9.433317 CACCGAATATTTGTGTATCAATAACAC 57.567 33.333 9.68 0.00 45.96 3.32
3675 3839 9.391006 ACCGAATATTTGTGTATCAATAACACT 57.609 29.630 7.75 0.00 45.95 3.55
3676 3840 9.650371 CCGAATATTTGTGTATCAATAACACTG 57.350 33.333 7.75 0.00 45.95 3.66
3690 3854 5.946942 ATAACACTGTGTCAGAGATGGAT 57.053 39.130 14.68 0.00 35.18 3.41
3723 3887 0.108138 GATGGCTGCTACAGAACCGT 60.108 55.000 0.00 0.00 32.44 4.83
3737 3901 0.903454 AACCGTTCATCCCTCCGACT 60.903 55.000 0.00 0.00 0.00 4.18
3780 3944 1.144936 CTTGAGATCGCTCCCACCC 59.855 63.158 0.00 0.00 40.55 4.61
3805 3969 0.175531 GCAAGACCTCTGCTCTCTCC 59.824 60.000 0.00 0.00 0.00 3.71
3813 3977 2.158928 CCTCTGCTCTCTCCAGGAATTG 60.159 54.545 0.00 0.00 0.00 2.32
3871 4035 0.911525 TCTGCCCTCCTCCTTGAAGG 60.912 60.000 4.45 4.45 37.81 3.46
3872 4036 2.273776 GCCCTCCTCCTTGAAGGC 59.726 66.667 6.30 0.00 36.29 4.35
3879 4043 0.911525 CCTCCTTGAAGGCCCTCAGA 60.912 60.000 6.30 0.00 34.61 3.27
3883 4047 1.339535 CCTTGAAGGCCCTCAGACTTC 60.340 57.143 3.81 1.19 40.67 3.01
3904 4071 2.443394 GGATGCCATCCGGACCTGA 61.443 63.158 6.12 0.00 40.13 3.86
3918 4085 4.434520 CGGACCTGAAGAAGAAGATTACC 58.565 47.826 0.00 0.00 0.00 2.85
3933 4100 1.931635 TTACCAAACATGGAAGCCCC 58.068 50.000 1.10 0.00 0.00 5.80
3967 5952 0.179048 TGCTCACATCCCTTATGCGG 60.179 55.000 0.00 0.00 39.39 5.69
3992 5977 0.036294 GGTACCTTCACTCTGCCACC 60.036 60.000 4.06 0.00 0.00 4.61
4263 8320 3.071479 GGCTGATGTGAAGTCCGTTTTA 58.929 45.455 0.00 0.00 0.00 1.52
4272 8329 5.008217 TGTGAAGTCCGTTTTACTTGAATGG 59.992 40.000 0.00 0.00 37.31 3.16
4307 8392 2.706190 ACTCCAGTCAAAGCCTGTTAGT 59.294 45.455 0.00 0.00 0.00 2.24
4425 8599 8.757164 TGTAGAGCACGAAAATATATATGGTG 57.243 34.615 0.00 4.48 0.00 4.17
4430 8604 8.087982 AGCACGAAAATATATATGGTGAACAG 57.912 34.615 14.04 0.57 0.00 3.16
4542 8720 6.778069 TCACTAGATAAGTATGGGAAGACTGG 59.222 42.308 0.00 0.00 35.76 4.00
4626 8804 0.792640 CAACCGCACTGCTGAAGTAG 59.207 55.000 0.00 0.00 36.83 2.57
4627 8805 0.393077 AACCGCACTGCTGAAGTAGT 59.607 50.000 0.00 0.00 41.69 2.73
4635 8813 0.391228 TGCTGAAGTAGTGGAACGCA 59.609 50.000 0.00 0.00 45.86 5.24
4752 9075 6.073276 ACTGAAACTGGAACTTTTGTTTTTGC 60.073 34.615 0.00 0.00 43.66 3.68
4793 9116 4.688879 CGCAACAGACTTATGTCCAAGTAA 59.311 41.667 5.19 0.00 43.91 2.24
4794 9117 5.389516 CGCAACAGACTTATGTCCAAGTAAC 60.390 44.000 5.19 0.00 43.91 2.50
4845 9168 3.134458 CTCAAGAATGCTTCGTATCCCC 58.866 50.000 0.00 0.00 30.14 4.81
4876 9202 3.969117 TGTTCAACAGAATGCTGACAC 57.031 42.857 8.02 0.00 41.52 3.67
4883 9209 2.029020 ACAGAATGCTGACACGAAGCTA 60.029 45.455 8.02 0.00 45.17 3.32
4889 9215 1.063806 CTGACACGAAGCTACAGTGC 58.936 55.000 13.79 8.82 39.31 4.40
4891 9217 0.319555 GACACGAAGCTACAGTGCCA 60.320 55.000 13.79 0.00 39.31 4.92
4897 9223 2.482664 CGAAGCTACAGTGCCATCTGAT 60.483 50.000 7.47 0.00 38.63 2.90
4898 9224 2.616634 AGCTACAGTGCCATCTGATG 57.383 50.000 10.71 10.71 38.63 3.07
4899 9225 2.113807 AGCTACAGTGCCATCTGATGA 58.886 47.619 18.92 0.00 38.63 2.92
4900 9226 2.502947 AGCTACAGTGCCATCTGATGAA 59.497 45.455 18.92 4.20 38.63 2.57
4901 9227 3.054875 AGCTACAGTGCCATCTGATGAAA 60.055 43.478 18.92 3.84 38.63 2.69
4902 9228 3.311871 GCTACAGTGCCATCTGATGAAAG 59.688 47.826 18.92 3.79 38.63 2.62
4903 9229 2.719739 ACAGTGCCATCTGATGAAAGG 58.280 47.619 18.92 3.36 38.63 3.11
4906 9232 2.575279 AGTGCCATCTGATGAAAGGTCT 59.425 45.455 18.92 5.77 0.00 3.85
4907 9233 3.009916 AGTGCCATCTGATGAAAGGTCTT 59.990 43.478 18.92 0.00 0.00 3.01
4908 9234 3.376546 GTGCCATCTGATGAAAGGTCTTC 59.623 47.826 18.92 0.00 0.00 2.87
4910 9236 3.623203 GCCATCTGATGAAAGGTCTTCCA 60.623 47.826 18.92 0.00 35.89 3.53
4911 9237 4.197750 CCATCTGATGAAAGGTCTTCCAG 58.802 47.826 18.92 0.00 35.89 3.86
4912 9238 4.080695 CCATCTGATGAAAGGTCTTCCAGA 60.081 45.833 18.92 0.00 35.89 3.86
4913 9239 4.543590 TCTGATGAAAGGTCTTCCAGAC 57.456 45.455 0.00 0.00 44.32 3.51
4972 9324 0.734889 CCAATGTTCTGCCGGATGAC 59.265 55.000 5.05 0.00 0.00 3.06
4985 9337 3.426695 GCCGGATGACACTTTCTGAATTG 60.427 47.826 5.05 0.00 0.00 2.32
5001 9353 4.261801 TGAATTGAAGAATCCGAGGGAAC 58.738 43.478 0.00 0.00 34.34 3.62
5031 9383 5.366829 TCATGTTCAGCTCAATTCAGTTG 57.633 39.130 0.00 0.00 39.25 3.16
5033 9385 4.556942 TGTTCAGCTCAATTCAGTTGTG 57.443 40.909 0.00 0.00 38.95 3.33
5077 9431 1.082104 CTTTCAACCCGCGAGTTGC 60.082 57.895 26.41 0.00 45.47 4.17
5081 9435 0.249953 TCAACCCGCGAGTTGCTTAA 60.250 50.000 26.41 8.49 45.47 1.85
5082 9436 0.589223 CAACCCGCGAGTTGCTTAAA 59.411 50.000 20.59 0.00 40.60 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 1.691976 AGTTCTGGGTTGACGACATCA 59.308 47.619 0.00 0.00 34.65 3.07
327 328 6.238731 CCTGACAAACTTGTGCTTCATCTTAA 60.239 38.462 0.00 0.00 42.43 1.85
352 353 1.376553 GACAGCAGGGCCAAGAGAC 60.377 63.158 6.18 0.00 0.00 3.36
356 357 1.108727 TTGTTGACAGCAGGGCCAAG 61.109 55.000 6.18 0.00 0.00 3.61
517 524 3.119919 CCATGAGCTTCTGAACTTTCTGC 60.120 47.826 0.00 0.00 0.00 4.26
519 526 4.202398 TGTCCATGAGCTTCTGAACTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
520 527 4.067896 TGTCCATGAGCTTCTGAACTTTC 58.932 43.478 0.00 0.00 0.00 2.62
521 528 4.090761 TGTCCATGAGCTTCTGAACTTT 57.909 40.909 0.00 0.00 0.00 2.66
522 529 3.777106 TGTCCATGAGCTTCTGAACTT 57.223 42.857 0.00 0.00 0.00 2.66
523 530 3.777106 TTGTCCATGAGCTTCTGAACT 57.223 42.857 0.00 0.00 0.00 3.01
524 531 4.005650 TCATTGTCCATGAGCTTCTGAAC 58.994 43.478 0.00 0.00 36.94 3.18
525 532 4.290711 TCATTGTCCATGAGCTTCTGAA 57.709 40.909 0.00 0.00 36.94 3.02
526 533 3.986996 TCATTGTCCATGAGCTTCTGA 57.013 42.857 0.00 0.00 36.94 3.27
530 537 1.945394 GCGATCATTGTCCATGAGCTT 59.055 47.619 0.00 0.00 44.88 3.74
584 603 5.228945 TCTTTCTCCTTTTCTCGTCCAAT 57.771 39.130 0.00 0.00 0.00 3.16
741 763 2.092646 AGGCGGGCAATATACTTCAACA 60.093 45.455 3.78 0.00 0.00 3.33
742 764 2.548480 GAGGCGGGCAATATACTTCAAC 59.452 50.000 3.78 0.00 0.00 3.18
743 765 2.438021 AGAGGCGGGCAATATACTTCAA 59.562 45.455 3.78 0.00 0.00 2.69
744 766 2.037251 GAGAGGCGGGCAATATACTTCA 59.963 50.000 3.78 0.00 0.00 3.02
746 768 2.300437 GAGAGAGGCGGGCAATATACTT 59.700 50.000 3.78 0.00 0.00 2.24
749 771 1.267121 GGAGAGAGGCGGGCAATATA 58.733 55.000 3.78 0.00 0.00 0.86
750 772 0.764369 TGGAGAGAGGCGGGCAATAT 60.764 55.000 3.78 0.00 0.00 1.28
751 773 0.764369 ATGGAGAGAGGCGGGCAATA 60.764 55.000 3.78 0.00 0.00 1.90
752 774 2.049627 GATGGAGAGAGGCGGGCAAT 62.050 60.000 3.78 0.00 0.00 3.56
753 775 2.688666 ATGGAGAGAGGCGGGCAA 60.689 61.111 3.78 0.00 0.00 4.52
754 776 3.157252 GATGGAGAGAGGCGGGCA 61.157 66.667 3.78 0.00 0.00 5.36
755 777 3.157252 TGATGGAGAGAGGCGGGC 61.157 66.667 0.00 0.00 0.00 6.13
756 778 1.333636 AACTGATGGAGAGAGGCGGG 61.334 60.000 0.00 0.00 0.00 6.13
757 779 0.103937 GAACTGATGGAGAGAGGCGG 59.896 60.000 0.00 0.00 0.00 6.13
758 780 0.248825 CGAACTGATGGAGAGAGGCG 60.249 60.000 0.00 0.00 0.00 5.52
759 781 0.103937 CCGAACTGATGGAGAGAGGC 59.896 60.000 0.00 0.00 0.00 4.70
760 782 1.407258 GTCCGAACTGATGGAGAGAGG 59.593 57.143 0.00 0.00 34.21 3.69
761 783 2.374184 AGTCCGAACTGATGGAGAGAG 58.626 52.381 0.00 0.00 34.21 3.20
762 784 2.516227 AGTCCGAACTGATGGAGAGA 57.484 50.000 0.00 0.00 34.21 3.10
763 785 3.601443 AAAGTCCGAACTGATGGAGAG 57.399 47.619 0.00 0.00 35.36 3.20
764 786 3.557054 CCAAAAGTCCGAACTGATGGAGA 60.557 47.826 0.36 0.00 41.39 3.71
765 787 2.744202 CCAAAAGTCCGAACTGATGGAG 59.256 50.000 0.36 0.00 41.39 3.86
766 788 2.370519 TCCAAAAGTCCGAACTGATGGA 59.629 45.455 4.92 4.92 43.51 3.41
767 789 2.778299 TCCAAAAGTCCGAACTGATGG 58.222 47.619 0.24 0.24 40.74 3.51
768 790 4.002982 TCATCCAAAAGTCCGAACTGATG 58.997 43.478 0.00 0.00 35.25 3.07
769 791 4.256920 CTCATCCAAAAGTCCGAACTGAT 58.743 43.478 0.00 0.00 35.36 2.90
770 792 3.071023 ACTCATCCAAAAGTCCGAACTGA 59.929 43.478 0.00 0.00 35.36 3.41
771 793 3.403038 ACTCATCCAAAAGTCCGAACTG 58.597 45.455 0.00 0.00 35.36 3.16
772 794 3.771577 ACTCATCCAAAAGTCCGAACT 57.228 42.857 0.00 0.00 37.32 3.01
773 795 3.058224 CCAACTCATCCAAAAGTCCGAAC 60.058 47.826 0.00 0.00 0.00 3.95
774 796 3.146066 CCAACTCATCCAAAAGTCCGAA 58.854 45.455 0.00 0.00 0.00 4.30
775 797 2.778299 CCAACTCATCCAAAAGTCCGA 58.222 47.619 0.00 0.00 0.00 4.55
776 798 1.200020 GCCAACTCATCCAAAAGTCCG 59.800 52.381 0.00 0.00 0.00 4.79
777 799 2.229784 CAGCCAACTCATCCAAAAGTCC 59.770 50.000 0.00 0.00 0.00 3.85
778 800 2.229784 CCAGCCAACTCATCCAAAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
779 801 2.158475 TCCAGCCAACTCATCCAAAAGT 60.158 45.455 0.00 0.00 0.00 2.66
780 802 2.490903 CTCCAGCCAACTCATCCAAAAG 59.509 50.000 0.00 0.00 0.00 2.27
781 803 2.158475 ACTCCAGCCAACTCATCCAAAA 60.158 45.455 0.00 0.00 0.00 2.44
782 804 1.425066 ACTCCAGCCAACTCATCCAAA 59.575 47.619 0.00 0.00 0.00 3.28
783 805 1.067295 ACTCCAGCCAACTCATCCAA 58.933 50.000 0.00 0.00 0.00 3.53
784 806 1.951209 TACTCCAGCCAACTCATCCA 58.049 50.000 0.00 0.00 0.00 3.41
785 807 2.435805 TCATACTCCAGCCAACTCATCC 59.564 50.000 0.00 0.00 0.00 3.51
786 808 3.827008 TCATACTCCAGCCAACTCATC 57.173 47.619 0.00 0.00 0.00 2.92
787 809 4.785346 ATTCATACTCCAGCCAACTCAT 57.215 40.909 0.00 0.00 0.00 2.90
788 810 4.019411 TGAATTCATACTCCAGCCAACTCA 60.019 41.667 3.38 0.00 0.00 3.41
789 811 4.517285 TGAATTCATACTCCAGCCAACTC 58.483 43.478 3.38 0.00 0.00 3.01
790 812 4.574674 TGAATTCATACTCCAGCCAACT 57.425 40.909 3.38 0.00 0.00 3.16
791 813 5.841957 ATTGAATTCATACTCCAGCCAAC 57.158 39.130 9.40 0.00 0.00 3.77
792 814 6.491062 CCATATTGAATTCATACTCCAGCCAA 59.509 38.462 9.40 0.00 0.00 4.52
793 815 6.005823 CCATATTGAATTCATACTCCAGCCA 58.994 40.000 9.40 0.00 0.00 4.75
794 816 6.006449 ACCATATTGAATTCATACTCCAGCC 58.994 40.000 9.40 0.00 0.00 4.85
795 817 8.798859 ATACCATATTGAATTCATACTCCAGC 57.201 34.615 9.40 0.00 0.00 4.85
796 818 9.948964 TGATACCATATTGAATTCATACTCCAG 57.051 33.333 9.40 0.00 0.00 3.86
797 819 9.948964 CTGATACCATATTGAATTCATACTCCA 57.051 33.333 9.40 0.00 0.00 3.86
800 822 9.664332 GCTCTGATACCATATTGAATTCATACT 57.336 33.333 9.40 0.08 0.00 2.12
801 823 8.887717 GGCTCTGATACCATATTGAATTCATAC 58.112 37.037 9.40 0.00 0.00 2.39
802 824 8.605065 TGGCTCTGATACCATATTGAATTCATA 58.395 33.333 9.40 4.69 0.00 2.15
803 825 7.464273 TGGCTCTGATACCATATTGAATTCAT 58.536 34.615 9.40 2.50 0.00 2.57
804 826 6.840527 TGGCTCTGATACCATATTGAATTCA 58.159 36.000 3.38 3.38 0.00 2.57
805 827 7.663081 TCTTGGCTCTGATACCATATTGAATTC 59.337 37.037 0.00 0.00 35.42 2.17
806 828 7.520798 TCTTGGCTCTGATACCATATTGAATT 58.479 34.615 0.91 0.00 35.42 2.17
807 829 7.083062 TCTTGGCTCTGATACCATATTGAAT 57.917 36.000 0.91 0.00 35.42 2.57
808 830 6.464892 CCTCTTGGCTCTGATACCATATTGAA 60.465 42.308 0.91 0.00 35.42 2.69
809 831 5.012458 CCTCTTGGCTCTGATACCATATTGA 59.988 44.000 0.91 0.00 35.42 2.57
810 832 5.221803 ACCTCTTGGCTCTGATACCATATTG 60.222 44.000 0.91 0.00 35.42 1.90
811 833 4.910304 ACCTCTTGGCTCTGATACCATATT 59.090 41.667 0.91 0.00 35.42 1.28
812 834 4.497516 ACCTCTTGGCTCTGATACCATAT 58.502 43.478 0.91 0.00 35.42 1.78
813 835 3.898123 GACCTCTTGGCTCTGATACCATA 59.102 47.826 0.91 0.00 35.42 2.74
814 836 2.703007 GACCTCTTGGCTCTGATACCAT 59.297 50.000 0.91 0.00 35.42 3.55
815 837 2.111384 GACCTCTTGGCTCTGATACCA 58.889 52.381 0.00 0.00 36.63 3.25
816 838 2.393646 AGACCTCTTGGCTCTGATACC 58.606 52.381 0.00 0.00 36.63 2.73
840 862 1.949257 CGTTGGCAGGGTCTTGAAC 59.051 57.895 0.00 0.00 0.00 3.18
842 864 2.281484 GCGTTGGCAGGGTCTTGA 60.281 61.111 0.00 0.00 39.62 3.02
843 865 2.594303 TGCGTTGGCAGGGTCTTG 60.594 61.111 0.00 0.00 46.21 3.02
870 892 2.507407 TAGGCCGCAGAATCCTTTTT 57.493 45.000 0.00 0.00 0.00 1.94
871 893 2.736670 ATAGGCCGCAGAATCCTTTT 57.263 45.000 0.00 0.00 0.00 2.27
872 894 5.499004 TTATATAGGCCGCAGAATCCTTT 57.501 39.130 0.00 0.00 0.00 3.11
873 895 5.499004 TTTATATAGGCCGCAGAATCCTT 57.501 39.130 0.00 0.00 0.00 3.36
874 896 5.700402 ATTTATATAGGCCGCAGAATCCT 57.300 39.130 0.00 0.00 0.00 3.24
875 897 5.297029 GGAATTTATATAGGCCGCAGAATCC 59.703 44.000 0.00 0.00 0.00 3.01
876 898 5.880332 TGGAATTTATATAGGCCGCAGAATC 59.120 40.000 0.00 0.00 0.00 2.52
877 899 5.648092 GTGGAATTTATATAGGCCGCAGAAT 59.352 40.000 0.00 0.00 0.00 2.40
878 900 5.001232 GTGGAATTTATATAGGCCGCAGAA 58.999 41.667 0.00 0.00 0.00 3.02
879 901 4.575885 GTGGAATTTATATAGGCCGCAGA 58.424 43.478 0.00 0.00 0.00 4.26
880 902 3.370978 CGTGGAATTTATATAGGCCGCAG 59.629 47.826 0.00 0.00 0.00 5.18
881 903 3.244284 ACGTGGAATTTATATAGGCCGCA 60.244 43.478 0.00 0.00 0.00 5.69
882 904 3.332034 ACGTGGAATTTATATAGGCCGC 58.668 45.455 0.00 0.00 0.00 6.53
883 905 4.817517 AGACGTGGAATTTATATAGGCCG 58.182 43.478 0.00 0.00 0.00 6.13
884 906 7.609056 TCTTAGACGTGGAATTTATATAGGCC 58.391 38.462 0.00 0.00 0.00 5.19
885 907 7.275999 GCTCTTAGACGTGGAATTTATATAGGC 59.724 40.741 0.00 0.00 0.00 3.93
886 908 8.524487 AGCTCTTAGACGTGGAATTTATATAGG 58.476 37.037 0.00 0.00 0.00 2.57
893 915 9.099454 CTTAATTAGCTCTTAGACGTGGAATTT 57.901 33.333 0.00 0.00 0.00 1.82
894 916 7.224949 GCTTAATTAGCTCTTAGACGTGGAATT 59.775 37.037 0.00 0.00 46.77 2.17
895 917 6.702282 GCTTAATTAGCTCTTAGACGTGGAAT 59.298 38.462 0.00 0.00 46.77 3.01
896 918 6.040878 GCTTAATTAGCTCTTAGACGTGGAA 58.959 40.000 0.00 0.00 46.77 3.53
897 919 5.589192 GCTTAATTAGCTCTTAGACGTGGA 58.411 41.667 0.00 0.00 46.77 4.02
898 920 5.891810 GCTTAATTAGCTCTTAGACGTGG 57.108 43.478 0.00 0.00 46.77 4.94
911 933 4.262079 CCCCTCACGTCTAGGCTTAATTAG 60.262 50.000 7.81 0.00 32.34 1.73
912 934 3.640029 CCCCTCACGTCTAGGCTTAATTA 59.360 47.826 7.81 0.00 32.34 1.40
913 935 2.434702 CCCCTCACGTCTAGGCTTAATT 59.565 50.000 7.81 0.00 32.34 1.40
914 936 2.040178 CCCCTCACGTCTAGGCTTAAT 58.960 52.381 7.81 0.00 32.34 1.40
915 937 1.481871 CCCCTCACGTCTAGGCTTAA 58.518 55.000 7.81 0.00 32.34 1.85
916 938 0.396695 CCCCCTCACGTCTAGGCTTA 60.397 60.000 7.81 0.00 32.34 3.09
917 939 1.686110 CCCCCTCACGTCTAGGCTT 60.686 63.158 7.81 0.00 32.34 4.35
918 940 2.042843 CCCCCTCACGTCTAGGCT 60.043 66.667 7.81 0.00 32.34 4.58
933 955 2.956333 GGCAATATACTTCAACACCCCC 59.044 50.000 0.00 0.00 0.00 5.40
934 956 2.956333 GGGCAATATACTTCAACACCCC 59.044 50.000 0.00 0.00 0.00 4.95
935 957 2.616842 CGGGCAATATACTTCAACACCC 59.383 50.000 0.00 0.00 0.00 4.61
936 958 2.032924 GCGGGCAATATACTTCAACACC 59.967 50.000 0.00 0.00 0.00 4.16
937 959 2.032924 GGCGGGCAATATACTTCAACAC 59.967 50.000 0.00 0.00 0.00 3.32
938 960 2.092646 AGGCGGGCAATATACTTCAACA 60.093 45.455 3.78 0.00 0.00 3.33
939 961 2.548480 GAGGCGGGCAATATACTTCAAC 59.452 50.000 3.78 0.00 0.00 3.18
940 962 2.438021 AGAGGCGGGCAATATACTTCAA 59.562 45.455 3.78 0.00 0.00 2.69
941 963 2.037251 GAGAGGCGGGCAATATACTTCA 59.963 50.000 3.78 0.00 0.00 3.02
942 964 2.300437 AGAGAGGCGGGCAATATACTTC 59.700 50.000 3.78 0.00 0.00 3.01
943 965 2.300437 GAGAGAGGCGGGCAATATACTT 59.700 50.000 3.78 0.00 0.00 2.24
944 966 1.896465 GAGAGAGGCGGGCAATATACT 59.104 52.381 3.78 0.00 0.00 2.12
945 967 1.066787 GGAGAGAGGCGGGCAATATAC 60.067 57.143 3.78 0.00 0.00 1.47
946 968 1.267121 GGAGAGAGGCGGGCAATATA 58.733 55.000 3.78 0.00 0.00 0.86
947 969 0.764369 TGGAGAGAGGCGGGCAATAT 60.764 55.000 3.78 0.00 0.00 1.28
948 970 0.764369 ATGGAGAGAGGCGGGCAATA 60.764 55.000 3.78 0.00 0.00 1.90
949 971 2.049627 GATGGAGAGAGGCGGGCAAT 62.050 60.000 3.78 0.00 0.00 3.56
950 972 2.688666 ATGGAGAGAGGCGGGCAA 60.689 61.111 3.78 0.00 0.00 4.52
951 973 3.157252 GATGGAGAGAGGCGGGCA 61.157 66.667 3.78 0.00 0.00 5.36
952 974 3.157252 TGATGGAGAGAGGCGGGC 61.157 66.667 0.00 0.00 0.00 6.13
953 975 1.333636 AACTGATGGAGAGAGGCGGG 61.334 60.000 0.00 0.00 0.00 6.13
954 976 0.103937 GAACTGATGGAGAGAGGCGG 59.896 60.000 0.00 0.00 0.00 6.13
955 977 0.248825 CGAACTGATGGAGAGAGGCG 60.249 60.000 0.00 0.00 0.00 5.52
956 978 0.103937 CCGAACTGATGGAGAGAGGC 59.896 60.000 0.00 0.00 0.00 4.70
957 979 1.407258 GTCCGAACTGATGGAGAGAGG 59.593 57.143 0.00 0.00 34.21 3.69
958 980 2.374184 AGTCCGAACTGATGGAGAGAG 58.626 52.381 0.00 0.00 34.21 3.20
959 981 2.516227 AGTCCGAACTGATGGAGAGA 57.484 50.000 0.00 0.00 34.21 3.10
960 982 3.601443 AAAGTCCGAACTGATGGAGAG 57.399 47.619 0.00 0.00 35.36 3.20
961 983 3.557054 CCAAAAGTCCGAACTGATGGAGA 60.557 47.826 0.36 0.00 41.39 3.71
962 984 2.744202 CCAAAAGTCCGAACTGATGGAG 59.256 50.000 0.36 0.00 41.39 3.86
963 985 2.370519 TCCAAAAGTCCGAACTGATGGA 59.629 45.455 4.92 4.92 43.51 3.41
964 986 2.778299 TCCAAAAGTCCGAACTGATGG 58.222 47.619 0.24 0.24 40.74 3.51
965 987 4.002982 TCATCCAAAAGTCCGAACTGATG 58.997 43.478 0.00 0.00 35.25 3.07
966 988 4.256920 CTCATCCAAAAGTCCGAACTGAT 58.743 43.478 0.00 0.00 35.36 2.90
967 989 3.071023 ACTCATCCAAAAGTCCGAACTGA 59.929 43.478 0.00 0.00 35.36 3.41
968 990 3.403038 ACTCATCCAAAAGTCCGAACTG 58.597 45.455 0.00 0.00 35.36 3.16
969 991 3.771577 ACTCATCCAAAAGTCCGAACT 57.228 42.857 0.00 0.00 37.32 3.01
970 992 3.058224 CCAACTCATCCAAAAGTCCGAAC 60.058 47.826 0.00 0.00 0.00 3.95
971 993 3.146066 CCAACTCATCCAAAAGTCCGAA 58.854 45.455 0.00 0.00 0.00 4.30
972 994 2.778299 CCAACTCATCCAAAAGTCCGA 58.222 47.619 0.00 0.00 0.00 4.55
973 995 1.200020 GCCAACTCATCCAAAAGTCCG 59.800 52.381 0.00 0.00 0.00 4.79
974 996 2.229784 CAGCCAACTCATCCAAAAGTCC 59.770 50.000 0.00 0.00 0.00 3.85
975 997 3.149196 TCAGCCAACTCATCCAAAAGTC 58.851 45.455 0.00 0.00 0.00 3.01
976 998 3.228188 TCAGCCAACTCATCCAAAAGT 57.772 42.857 0.00 0.00 0.00 2.66
977 999 3.571401 ACTTCAGCCAACTCATCCAAAAG 59.429 43.478 0.00 0.00 0.00 2.27
978 1000 3.565307 ACTTCAGCCAACTCATCCAAAA 58.435 40.909 0.00 0.00 0.00 2.44
979 1001 3.228188 ACTTCAGCCAACTCATCCAAA 57.772 42.857 0.00 0.00 0.00 3.28
980 1002 2.957402 ACTTCAGCCAACTCATCCAA 57.043 45.000 0.00 0.00 0.00 3.53
981 1003 3.370846 CCATACTTCAGCCAACTCATCCA 60.371 47.826 0.00 0.00 0.00 3.41
982 1004 3.209410 CCATACTTCAGCCAACTCATCC 58.791 50.000 0.00 0.00 0.00 3.51
983 1005 3.873952 GACCATACTTCAGCCAACTCATC 59.126 47.826 0.00 0.00 0.00 2.92
984 1006 3.264193 TGACCATACTTCAGCCAACTCAT 59.736 43.478 0.00 0.00 0.00 2.90
985 1007 2.637382 TGACCATACTTCAGCCAACTCA 59.363 45.455 0.00 0.00 0.00 3.41
986 1008 3.334583 TGACCATACTTCAGCCAACTC 57.665 47.619 0.00 0.00 0.00 3.01
987 1009 3.521126 AGATGACCATACTTCAGCCAACT 59.479 43.478 0.00 0.00 29.21 3.16
988 1010 3.624861 CAGATGACCATACTTCAGCCAAC 59.375 47.826 0.00 0.00 29.21 3.77
989 1011 3.370846 CCAGATGACCATACTTCAGCCAA 60.371 47.826 0.00 0.00 29.21 4.52
990 1012 2.171237 CCAGATGACCATACTTCAGCCA 59.829 50.000 0.00 0.00 29.21 4.75
991 1013 2.435805 TCCAGATGACCATACTTCAGCC 59.564 50.000 0.00 0.00 29.21 4.85
992 1014 3.462021 GTCCAGATGACCATACTTCAGC 58.538 50.000 0.00 0.00 38.09 4.26
1411 1440 7.945033 TTGCAATTTGTTCTCCAATTAACTC 57.055 32.000 0.00 0.00 31.81 3.01
1497 1526 5.606348 ATCTTCTCCAGTATTCAGGTGTC 57.394 43.478 0.00 0.00 0.00 3.67
1515 1544 5.266788 TCCAATCCTTGATGCAAGAATCTT 58.733 37.500 8.64 0.00 43.42 2.40
1661 1696 6.193761 CACATTTGCACCAATTGTTTCTTTC 58.806 36.000 4.43 0.00 36.31 2.62
1669 1704 3.437395 CCAATCCACATTTGCACCAATTG 59.563 43.478 0.00 0.00 32.93 2.32
1734 1778 1.536766 TGAGCCAAGAATTGTTCTGCG 59.463 47.619 0.00 0.00 46.99 5.18
1796 1840 6.806668 AACTTTCTTTTTCTTCCCATCCAA 57.193 33.333 0.00 0.00 0.00 3.53
1802 1846 9.140286 GCATTACATAACTTTCTTTTTCTTCCC 57.860 33.333 0.00 0.00 0.00 3.97
1886 1930 5.702670 TCATCTTGAAGTTGAACAGGATCAC 59.297 40.000 3.60 0.00 32.12 3.06
2015 2059 5.560953 GCATTTTCAACTAGCGGGATATCAC 60.561 44.000 4.83 0.00 0.00 3.06
2017 2061 4.757149 AGCATTTTCAACTAGCGGGATATC 59.243 41.667 0.00 0.00 0.00 1.63
2027 2071 5.448438 CGCAAACAGTAGCATTTTCAACTA 58.552 37.500 0.00 0.00 0.00 2.24
2039 2083 3.332761 TTTGAAGTGCGCAAACAGTAG 57.667 42.857 14.00 0.00 30.87 2.57
2094 2138 6.772716 AGGATTGGTTTCGTAATTCTGCATAT 59.227 34.615 0.00 0.00 0.00 1.78
2095 2139 6.038161 CAGGATTGGTTTCGTAATTCTGCATA 59.962 38.462 0.00 0.00 34.22 3.14
2107 2151 3.090952 TGCAAAACAGGATTGGTTTCG 57.909 42.857 0.00 0.00 42.20 3.46
2113 2157 6.423862 CAAACTTGATTGCAAAACAGGATTG 58.576 36.000 19.84 19.15 33.91 2.67
2114 2158 5.528320 CCAAACTTGATTGCAAAACAGGATT 59.472 36.000 19.84 13.89 30.28 3.01
2165 2215 4.082245 TGTCTTGTGCTATCGAACTCATGA 60.082 41.667 0.00 0.00 0.00 3.07
2167 2217 4.456280 TGTCTTGTGCTATCGAACTCAT 57.544 40.909 0.00 0.00 0.00 2.90
2179 2229 2.684881 CCCCACATATCTTGTCTTGTGC 59.315 50.000 0.00 0.00 38.47 4.57
2257 2313 6.774656 AGGTTCCCTAAATATCTTGCTTCATG 59.225 38.462 0.00 0.00 28.47 3.07
2290 2346 1.412710 ACCATAGGATACACACCGCAG 59.587 52.381 0.00 0.00 41.41 5.18
2297 2353 2.093181 TGCACACCACCATAGGATACAC 60.093 50.000 0.00 0.00 41.41 2.90
2307 2363 0.967662 CAAATCCATGCACACCACCA 59.032 50.000 0.00 0.00 0.00 4.17
2308 2364 0.247185 CCAAATCCATGCACACCACC 59.753 55.000 0.00 0.00 0.00 4.61
2309 2365 0.968405 ACCAAATCCATGCACACCAC 59.032 50.000 0.00 0.00 0.00 4.16
2337 2393 2.251818 AGAGAAGTGAGCCTGCTTACA 58.748 47.619 15.28 0.00 35.36 2.41
2338 2394 3.258228 GAAGAGAAGTGAGCCTGCTTAC 58.742 50.000 5.97 5.97 33.42 2.34
2378 2434 5.129634 TGTTGCATGTTCTTTCTTCTACCA 58.870 37.500 0.00 0.00 0.00 3.25
2401 2457 5.488262 AAGCTCCCAATTGCACTTATTTT 57.512 34.783 0.00 0.00 0.00 1.82
2435 2491 3.118531 AGACCCTGCAGACCTAATTCAT 58.881 45.455 17.39 0.00 0.00 2.57
2442 2498 0.178921 TCTCAAGACCCTGCAGACCT 60.179 55.000 17.39 5.96 0.00 3.85
2489 2545 3.855858 TGTTTTTCCTTCAACTTGGCAC 58.144 40.909 0.00 0.00 0.00 5.01
2524 2580 3.448686 GTGTCGACCACTCCATGAATAG 58.551 50.000 14.12 0.00 41.11 1.73
2529 2585 0.390340 CAGGTGTCGACCACTCCATG 60.390 60.000 14.12 7.04 45.98 3.66
2568 2624 3.498777 GCTCAAGGTGGTCAAGAACTAAC 59.501 47.826 0.00 0.00 0.00 2.34
2628 2768 2.110578 GATGGAATTTTGGGACCTGGG 58.889 52.381 0.00 0.00 0.00 4.45
2676 2816 6.436027 ACTTATCAACCTGAGAGATACCAGA 58.564 40.000 0.00 0.00 32.37 3.86
2745 2885 6.264518 GGTCCTCCAACATTAGAAACTTCAAA 59.735 38.462 0.00 0.00 0.00 2.69
2752 2892 4.041198 ACGAAGGTCCTCCAACATTAGAAA 59.959 41.667 0.00 0.00 35.89 2.52
2774 2914 3.106672 CGACCAATCTGACGTAGCTTAC 58.893 50.000 0.00 0.00 0.00 2.34
2811 2951 0.330604 ACTCCGTGGAGCTACTACCA 59.669 55.000 15.80 0.00 45.54 3.25
2812 2952 1.134560 CAACTCCGTGGAGCTACTACC 59.865 57.143 15.80 0.00 45.54 3.18
2814 2954 0.815734 GCAACTCCGTGGAGCTACTA 59.184 55.000 15.80 0.00 45.54 1.82
2851 2994 6.692681 CGGCATTCATTTACTTCCAAACTATG 59.307 38.462 0.00 0.00 0.00 2.23
2867 3010 1.134280 CCCTCAGTTCTCGGCATTCAT 60.134 52.381 0.00 0.00 0.00 2.57
2889 3032 4.654724 AGGCTTGGAGGTAGAATAGGTAAC 59.345 45.833 0.00 0.00 0.00 2.50
2916 3059 8.200792 AGACAAACATCTCCTATATTCAGTGAC 58.799 37.037 0.00 0.00 0.00 3.67
2920 3063 7.655328 GGTCAGACAAACATCTCCTATATTCAG 59.345 40.741 2.17 0.00 0.00 3.02
2925 3068 6.867519 TTGGTCAGACAAACATCTCCTATA 57.132 37.500 2.17 0.00 0.00 1.31
2964 3107 3.738281 CGATGCTTCCACTCGGTATCTTT 60.738 47.826 0.00 0.00 0.00 2.52
2971 3114 1.880340 GCTCGATGCTTCCACTCGG 60.880 63.158 0.00 0.00 38.95 4.63
2978 3121 3.314635 AGATGATTTTGGCTCGATGCTTC 59.685 43.478 6.78 0.00 42.39 3.86
2979 3122 3.285484 AGATGATTTTGGCTCGATGCTT 58.715 40.909 6.78 0.00 42.39 3.91
3012 3155 7.517320 AGCATGGACAGTTGGTGATAATTATA 58.483 34.615 0.00 0.00 0.00 0.98
3073 3216 0.684535 TCGAGAGTTCCCATGTGCAA 59.315 50.000 0.00 0.00 0.00 4.08
3076 3219 1.293924 GCATCGAGAGTTCCCATGTG 58.706 55.000 0.00 0.00 0.00 3.21
3092 3235 9.082313 CCTGACAATTATTAATTCTTAGGGCAT 57.918 33.333 7.11 0.00 0.00 4.40
3109 3252 2.947652 CGGATTGCAGATCCTGACAATT 59.052 45.455 19.27 0.00 37.86 2.32
3124 3267 0.178964 AATGGTATGGGGGCGGATTG 60.179 55.000 0.00 0.00 0.00 2.67
3126 3269 0.178964 CAAATGGTATGGGGGCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
3132 3275 8.757877 TCTTTAATTTCTTCAAATGGTATGGGG 58.242 33.333 0.00 0.00 32.18 4.96
3133 3276 9.807649 CTCTTTAATTTCTTCAAATGGTATGGG 57.192 33.333 0.00 0.00 32.18 4.00
3167 3310 3.138304 GGACATGCCGTTATTATGAGCA 58.862 45.455 0.00 0.00 37.94 4.26
3173 3316 5.004448 TCAACTTTGGACATGCCGTTATTA 58.996 37.500 0.00 0.00 40.66 0.98
3234 3380 8.822805 TGACCAATAGTAAGGTTTCTTAGTGAT 58.177 33.333 0.00 0.00 38.97 3.06
3249 3395 4.530710 GTCACCACACTGACCAATAGTA 57.469 45.455 0.00 0.00 35.44 1.82
3258 3404 0.468226 GTTCCAGGTCACCACACTGA 59.532 55.000 0.00 0.00 34.21 3.41
3290 3436 1.476007 GGTGAGCAGGTGGAGTGACT 61.476 60.000 0.00 0.00 0.00 3.41
3297 3443 2.026822 AGATAAGTTGGTGAGCAGGTGG 60.027 50.000 0.00 0.00 0.00 4.61
3300 3446 2.012673 GCAGATAAGTTGGTGAGCAGG 58.987 52.381 0.00 0.00 0.00 4.85
3321 3467 2.744202 CGAGCAGTTTTCCAGCATAAGT 59.256 45.455 0.00 0.00 0.00 2.24
3324 3470 2.621338 CTCGAGCAGTTTTCCAGCATA 58.379 47.619 0.00 0.00 0.00 3.14
3326 3472 1.230635 GCTCGAGCAGTTTTCCAGCA 61.231 55.000 31.91 0.00 41.59 4.41
3372 3518 4.202398 TGCAAAGACCTGAGACTCTTGAAT 60.202 41.667 3.68 0.00 0.00 2.57
3398 3544 2.358582 TCGCATTCCTTTATGTGCATGG 59.641 45.455 0.00 0.00 37.44 3.66
3465 3611 5.188359 ACCGCACCCTCTAATTACTAAGAAA 59.812 40.000 0.00 0.00 0.00 2.52
3467 3613 4.284178 ACCGCACCCTCTAATTACTAAGA 58.716 43.478 0.00 0.00 0.00 2.10
3473 3619 4.440525 CGAGTTTACCGCACCCTCTAATTA 60.441 45.833 0.00 0.00 0.00 1.40
3477 3623 0.813184 CGAGTTTACCGCACCCTCTA 59.187 55.000 0.00 0.00 0.00 2.43
3487 3633 1.810030 CAGCCTCCGCGAGTTTACC 60.810 63.158 8.23 0.00 41.18 2.85
3549 3713 2.202987 GGCTCCACCAGATGCTCG 60.203 66.667 0.00 0.00 38.86 5.03
3570 3734 6.798427 AGATTTGTTATCTCCAGTGAGCTA 57.202 37.500 0.00 0.00 38.58 3.32
3580 3744 9.932699 CAGATCAATGTCAAGATTTGTTATCTC 57.067 33.333 0.00 0.00 0.00 2.75
3587 3751 4.142534 ACGGCAGATCAATGTCAAGATTTG 60.143 41.667 0.00 5.36 31.59 2.32
3588 3752 4.012374 ACGGCAGATCAATGTCAAGATTT 58.988 39.130 0.00 0.00 0.00 2.17
3590 3754 3.201290 GACGGCAGATCAATGTCAAGAT 58.799 45.455 0.00 0.00 0.00 2.40
3595 3759 0.179000 AGGGACGGCAGATCAATGTC 59.821 55.000 0.00 0.00 0.00 3.06
3613 3777 0.677098 AGTGGCTCAAGATGCAGCAG 60.677 55.000 4.07 0.00 37.38 4.24
3630 3794 1.181741 TGCGGCAGAGACTCTTGAGT 61.182 55.000 0.98 2.59 0.00 3.41
3666 3830 5.482006 TCCATCTCTGACACAGTGTTATTG 58.518 41.667 7.86 0.00 32.61 1.90
3673 3837 3.641046 AGCTATCCATCTCTGACACAGT 58.359 45.455 0.00 0.00 32.61 3.55
3674 3838 4.669206 AAGCTATCCATCTCTGACACAG 57.331 45.455 0.00 0.00 0.00 3.66
3675 3839 4.342378 GGTAAGCTATCCATCTCTGACACA 59.658 45.833 0.00 0.00 0.00 3.72
3676 3840 4.586841 AGGTAAGCTATCCATCTCTGACAC 59.413 45.833 9.32 0.00 0.00 3.67
3677 3841 4.586421 CAGGTAAGCTATCCATCTCTGACA 59.414 45.833 9.32 0.00 0.00 3.58
3690 3854 2.108168 AGCCATCGTTCAGGTAAGCTA 58.892 47.619 0.00 0.00 0.00 3.32
3723 3887 0.614697 TCAGCAGTCGGAGGGATGAA 60.615 55.000 0.00 0.00 0.00 2.57
3737 3901 2.837591 TCTGCTTTGGGTATAGTCAGCA 59.162 45.455 0.00 0.00 35.95 4.41
3780 3944 2.008329 GAGCAGAGGTCTTGCATTCTG 58.992 52.381 0.00 0.00 39.94 3.02
3805 3969 6.238842 CCAGCATCAATTAGGTACAATTCCTG 60.239 42.308 0.00 0.00 36.60 3.86
3813 3977 2.930950 TGCCCAGCATCAATTAGGTAC 58.069 47.619 0.00 0.00 31.71 3.34
3871 4035 0.179936 CATCCTGGAAGTCTGAGGGC 59.820 60.000 0.00 0.00 0.00 5.19
3872 4036 0.179936 GCATCCTGGAAGTCTGAGGG 59.820 60.000 0.00 0.00 0.00 4.30
3904 4071 7.309438 GCTTCCATGTTTGGTAATCTTCTTCTT 60.309 37.037 0.00 0.00 44.06 2.52
3918 4085 1.135024 CATTCGGGGCTTCCATGTTTG 60.135 52.381 0.00 0.00 34.36 2.93
3933 4100 3.189080 TGTGAGCAATCTTGTTCCATTCG 59.811 43.478 4.61 0.00 37.58 3.34
3967 5952 4.081087 TGGCAGAGTGAAGGTACCTATTTC 60.081 45.833 16.67 10.12 0.00 2.17
3992 5977 6.705381 CAGAGCAGTAAATTAAGAGGATGAGG 59.295 42.308 0.00 0.00 0.00 3.86
4263 8320 6.716628 AGTGTACATTGTTCATCCATTCAAGT 59.283 34.615 0.00 0.00 0.00 3.16
4272 8329 5.237815 TGACTGGAGTGTACATTGTTCATC 58.762 41.667 0.00 0.00 0.00 2.92
4335 8420 7.721286 AATGGAGAACAGATTATCACGATTC 57.279 36.000 0.00 0.00 0.00 2.52
4378 8463 2.483106 GAGGGCTTCTTTTTGGACGTAC 59.517 50.000 0.00 0.00 0.00 3.67
4425 8599 9.341899 GATATGTTTTGTATGGTTTGTCTGTTC 57.658 33.333 0.00 0.00 0.00 3.18
4542 8720 7.496263 AGACGCCTATTCTCTTTTTCTAATTCC 59.504 37.037 0.00 0.00 0.00 3.01
4752 9075 4.307443 TGCGGTCACTATCACTGATAAG 57.693 45.455 0.42 0.00 0.00 1.73
4793 9116 1.185618 TCTTCCACTAGTGCAGCGGT 61.186 55.000 17.86 0.00 0.00 5.68
4794 9117 0.037326 TTCTTCCACTAGTGCAGCGG 60.037 55.000 17.86 3.46 0.00 5.52
4868 9191 0.673985 ACTGTAGCTTCGTGTCAGCA 59.326 50.000 0.00 0.00 39.99 4.41
4872 9195 0.319555 TGGCACTGTAGCTTCGTGTC 60.320 55.000 11.05 11.05 34.08 3.67
4876 9202 1.134995 TCAGATGGCACTGTAGCTTCG 60.135 52.381 14.00 0.00 38.79 3.79
4883 9209 2.040813 ACCTTTCATCAGATGGCACTGT 59.959 45.455 10.67 0.00 38.79 3.55
4889 9215 4.080695 TCTGGAAGACCTTTCATCAGATGG 60.081 45.833 10.67 0.00 38.67 3.51
4932 9258 3.128242 GGCATCTGATGAACAAGGAGTTG 59.872 47.826 21.30 0.00 41.51 3.16
4972 9324 6.402983 CCTCGGATTCTTCAATTCAGAAAGTG 60.403 42.308 1.55 0.00 33.94 3.16
4985 9337 2.165845 TCTTCGTTCCCTCGGATTCTTC 59.834 50.000 0.00 0.00 0.00 2.87
5001 9353 4.934075 TGAGCTGAACATGAATTCTTCG 57.066 40.909 7.05 0.00 0.00 3.79
5022 9374 4.624336 TTTGTACACGCACAACTGAATT 57.376 36.364 0.00 0.00 38.12 2.17
5023 9375 4.829064 ATTTGTACACGCACAACTGAAT 57.171 36.364 0.00 0.00 38.12 2.57
5031 9383 1.052287 GCTGCAATTTGTACACGCAC 58.948 50.000 0.00 0.00 0.00 5.34
5033 9385 0.240945 AGGCTGCAATTTGTACACGC 59.759 50.000 0.50 0.00 0.00 5.34
5034 9386 2.476185 GCTAGGCTGCAATTTGTACACG 60.476 50.000 0.50 0.00 0.00 4.49
5035 9387 2.749621 AGCTAGGCTGCAATTTGTACAC 59.250 45.455 0.50 0.00 37.57 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.