Multiple sequence alignment - TraesCS5B01G037000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G037000 chr5B 100.000 2804 0 0 1 2804 41270192 41272995 0.000000e+00 5179.0
1 TraesCS5B01G037000 chr5B 83.227 781 111 12 2035 2799 41085169 41085945 0.000000e+00 699.0
2 TraesCS5B01G037000 chr5B 92.015 263 19 2 1754 2016 312912177 312912437 4.410000e-98 368.0
3 TraesCS5B01G037000 chr5B 75.871 373 76 12 2439 2799 678256062 678255692 7.980000e-41 178.0
4 TraesCS5B01G037000 chr5A 92.807 1696 78 14 95 1754 33179023 33180710 0.000000e+00 2416.0
5 TraesCS5B01G037000 chr5A 96.086 792 31 0 2013 2804 33180739 33181530 0.000000e+00 1291.0
6 TraesCS5B01G037000 chr5A 95.238 42 2 0 726 767 33179636 33179677 1.800000e-07 67.6
7 TraesCS5B01G037000 chr5D 92.670 1105 39 11 665 1754 43405447 43406524 0.000000e+00 1554.0
8 TraesCS5B01G037000 chr5D 94.591 795 33 4 2013 2804 43406553 43407340 0.000000e+00 1221.0
9 TraesCS5B01G037000 chr5D 92.308 572 34 4 101 671 43399506 43400068 0.000000e+00 804.0
10 TraesCS5B01G037000 chr5D 83.611 781 108 12 2035 2799 43317109 43317885 0.000000e+00 715.0
11 TraesCS5B01G037000 chr5D 81.064 808 124 19 2013 2799 43748648 43749447 3.970000e-173 617.0
12 TraesCS5B01G037000 chr5D 84.046 608 77 12 1158 1754 43748021 43748619 4.050000e-158 568.0
13 TraesCS5B01G037000 chr5D 78.764 631 111 17 1013 1639 537630743 537631354 4.350000e-108 401.0
14 TraesCS5B01G037000 chr5D 91.221 262 21 2 1755 2016 2749085 2748826 3.440000e-94 355.0
15 TraesCS5B01G037000 chr5D 95.238 42 2 0 726 767 43405477 43405518 1.800000e-07 67.6
16 TraesCS5B01G037000 chr1B 97.026 269 7 1 1749 2016 569427173 569426905 4.260000e-123 451.0
17 TraesCS5B01G037000 chr4B 91.985 262 20 1 1755 2016 66802938 66802678 1.590000e-97 366.0
18 TraesCS5B01G037000 chr4B 91.221 262 22 1 1755 2016 187444243 187444503 3.440000e-94 355.0
19 TraesCS5B01G037000 chr7D 91.667 264 21 1 1754 2016 237412577 237412840 5.710000e-97 364.0
20 TraesCS5B01G037000 chr3B 90.441 272 24 2 1745 2016 672517805 672518074 9.550000e-95 357.0
21 TraesCS5B01G037000 chr2B 91.538 260 21 1 1757 2016 221723502 221723760 9.550000e-95 357.0
22 TraesCS5B01G037000 chr2D 90.672 268 23 2 1749 2016 54169141 54169406 3.440000e-94 355.0
23 TraesCS5B01G037000 chr6D 73.181 742 169 15 1022 1754 426490254 426489534 1.000000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G037000 chr5B 41270192 41272995 2803 False 5179.000000 5179 100.000000 1 2804 1 chr5B.!!$F2 2803
1 TraesCS5B01G037000 chr5B 41085169 41085945 776 False 699.000000 699 83.227000 2035 2799 1 chr5B.!!$F1 764
2 TraesCS5B01G037000 chr5A 33179023 33181530 2507 False 1258.200000 2416 94.710333 95 2804 3 chr5A.!!$F1 2709
3 TraesCS5B01G037000 chr5D 43405447 43407340 1893 False 947.533333 1554 94.166333 665 2804 3 chr5D.!!$F4 2139
4 TraesCS5B01G037000 chr5D 43399506 43400068 562 False 804.000000 804 92.308000 101 671 1 chr5D.!!$F2 570
5 TraesCS5B01G037000 chr5D 43317109 43317885 776 False 715.000000 715 83.611000 2035 2799 1 chr5D.!!$F1 764
6 TraesCS5B01G037000 chr5D 43748021 43749447 1426 False 592.500000 617 82.555000 1158 2799 2 chr5D.!!$F5 1641
7 TraesCS5B01G037000 chr5D 537630743 537631354 611 False 401.000000 401 78.764000 1013 1639 1 chr5D.!!$F3 626
8 TraesCS5B01G037000 chr6D 426489534 426490254 720 True 241.000000 241 73.181000 1022 1754 1 chr6D.!!$R1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.100861 GGGTCGGATCTTCGTGACTC 59.899 60.0 0.0 0.0 0.0 3.36 F
1791 1844 0.103937 GCCTCTCTCCATCAGTTCGG 59.896 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 1823 0.103937 GAACTGATGGAGAGAGGCGG 59.896 60.000 0.0 0.0 0.00 6.13 R
2747 2813 1.536766 TGAGCCAAGAATTGTTCTGCG 59.463 47.619 0.0 0.0 46.99 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.141665 TGACGGTCATGATGCTCCG 59.858 57.895 18.09 18.09 46.98 4.63
19 20 1.592669 GACGGTCATGATGCTCCGG 60.593 63.158 22.11 0.00 46.06 5.14
20 21 2.969238 CGGTCATGATGCTCCGGC 60.969 66.667 13.27 0.00 39.41 6.13
21 22 2.507944 GGTCATGATGCTCCGGCT 59.492 61.111 0.00 0.00 39.59 5.52
22 23 1.890979 GGTCATGATGCTCCGGCTG 60.891 63.158 0.00 0.00 39.59 4.85
23 24 1.153289 GTCATGATGCTCCGGCTGT 60.153 57.895 0.00 0.00 39.59 4.40
24 25 1.153309 TCATGATGCTCCGGCTGTG 60.153 57.895 0.00 0.00 39.59 3.66
25 26 2.515523 ATGATGCTCCGGCTGTGC 60.516 61.111 0.00 0.00 39.59 4.57
26 27 3.040206 ATGATGCTCCGGCTGTGCT 62.040 57.895 0.00 0.00 39.59 4.40
27 28 3.200593 GATGCTCCGGCTGTGCTG 61.201 66.667 0.00 0.00 39.59 4.41
35 36 4.101448 GGCTGTGCTGGGTCGGAT 62.101 66.667 0.00 0.00 0.00 4.18
36 37 2.512515 GCTGTGCTGGGTCGGATC 60.513 66.667 0.00 0.00 0.00 3.36
37 38 3.023949 GCTGTGCTGGGTCGGATCT 62.024 63.158 0.00 0.00 0.00 2.75
38 39 1.599047 CTGTGCTGGGTCGGATCTT 59.401 57.895 0.00 0.00 0.00 2.40
39 40 0.460987 CTGTGCTGGGTCGGATCTTC 60.461 60.000 0.00 0.00 0.00 2.87
40 41 1.519455 GTGCTGGGTCGGATCTTCG 60.519 63.158 0.00 0.00 0.00 3.79
41 42 1.982395 TGCTGGGTCGGATCTTCGT 60.982 57.895 0.00 0.00 0.00 3.85
42 43 1.519455 GCTGGGTCGGATCTTCGTG 60.519 63.158 0.00 0.00 0.00 4.35
43 44 1.945354 GCTGGGTCGGATCTTCGTGA 61.945 60.000 0.00 0.00 0.00 4.35
44 45 0.179134 CTGGGTCGGATCTTCGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
45 46 0.611062 TGGGTCGGATCTTCGTGACT 60.611 55.000 0.00 0.00 0.00 3.41
46 47 0.100861 GGGTCGGATCTTCGTGACTC 59.899 60.000 0.00 0.00 0.00 3.36
47 48 1.096416 GGTCGGATCTTCGTGACTCT 58.904 55.000 0.00 0.00 0.00 3.24
48 49 1.202200 GGTCGGATCTTCGTGACTCTG 60.202 57.143 0.00 0.00 0.00 3.35
49 50 0.452184 TCGGATCTTCGTGACTCTGC 59.548 55.000 0.00 0.00 0.00 4.26
50 51 0.171231 CGGATCTTCGTGACTCTGCA 59.829 55.000 0.00 0.00 0.00 4.41
51 52 1.402852 CGGATCTTCGTGACTCTGCAA 60.403 52.381 0.00 0.00 0.00 4.08
52 53 2.266554 GGATCTTCGTGACTCTGCAAG 58.733 52.381 0.00 0.00 0.00 4.01
53 54 2.094494 GGATCTTCGTGACTCTGCAAGA 60.094 50.000 0.00 0.00 43.69 3.02
54 55 3.430098 GGATCTTCGTGACTCTGCAAGAT 60.430 47.826 0.00 0.00 45.62 2.40
55 56 3.667497 TCTTCGTGACTCTGCAAGATT 57.333 42.857 3.37 0.00 45.62 2.40
56 57 3.995199 TCTTCGTGACTCTGCAAGATTT 58.005 40.909 3.37 0.00 45.62 2.17
57 58 3.742882 TCTTCGTGACTCTGCAAGATTTG 59.257 43.478 3.37 0.00 45.62 2.32
58 59 3.111853 TCGTGACTCTGCAAGATTTGT 57.888 42.857 3.37 0.00 45.62 2.83
59 60 3.059884 TCGTGACTCTGCAAGATTTGTC 58.940 45.455 3.37 0.00 45.62 3.18
60 61 2.158449 CGTGACTCTGCAAGATTTGTCC 59.842 50.000 3.37 0.00 45.62 4.02
61 62 2.485814 GTGACTCTGCAAGATTTGTCCC 59.514 50.000 3.37 0.00 45.62 4.46
62 63 2.106338 TGACTCTGCAAGATTTGTCCCA 59.894 45.455 3.37 0.00 45.62 4.37
63 64 3.245016 TGACTCTGCAAGATTTGTCCCAT 60.245 43.478 3.37 0.00 45.62 4.00
64 65 3.087031 ACTCTGCAAGATTTGTCCCATG 58.913 45.455 3.37 0.00 45.62 3.66
65 66 3.245016 ACTCTGCAAGATTTGTCCCATGA 60.245 43.478 0.00 0.00 45.62 3.07
66 67 3.084039 TCTGCAAGATTTGTCCCATGAC 58.916 45.455 0.00 0.00 38.67 3.06
67 68 3.087031 CTGCAAGATTTGTCCCATGACT 58.913 45.455 0.00 0.00 38.23 3.41
68 69 3.084039 TGCAAGATTTGTCCCATGACTC 58.916 45.455 0.00 0.00 42.28 3.36
69 70 3.245016 TGCAAGATTTGTCCCATGACTCT 60.245 43.478 0.00 0.00 42.28 3.24
70 71 3.128242 GCAAGATTTGTCCCATGACTCTG 59.872 47.826 0.00 0.00 42.28 3.35
71 72 2.996631 AGATTTGTCCCATGACTCTGC 58.003 47.619 0.00 0.00 42.28 4.26
72 73 2.306805 AGATTTGTCCCATGACTCTGCA 59.693 45.455 0.00 0.00 42.28 4.41
73 74 2.655090 TTTGTCCCATGACTCTGCAA 57.345 45.000 0.00 0.00 42.28 4.08
74 75 2.885135 TTGTCCCATGACTCTGCAAT 57.115 45.000 0.00 0.00 42.28 3.56
75 76 3.998913 TTGTCCCATGACTCTGCAATA 57.001 42.857 0.00 0.00 42.28 1.90
76 77 4.508551 TTGTCCCATGACTCTGCAATAT 57.491 40.909 0.00 0.00 42.28 1.28
77 78 3.812262 TGTCCCATGACTCTGCAATATG 58.188 45.455 0.00 0.00 42.28 1.78
78 79 3.455543 TGTCCCATGACTCTGCAATATGA 59.544 43.478 0.00 0.00 42.28 2.15
79 80 4.063689 GTCCCATGACTCTGCAATATGAG 58.936 47.826 0.00 0.00 38.53 2.90
80 81 3.072038 TCCCATGACTCTGCAATATGAGG 59.928 47.826 5.76 2.68 34.84 3.86
81 82 3.409570 CCATGACTCTGCAATATGAGGG 58.590 50.000 5.76 0.00 34.84 4.30
82 83 3.409570 CATGACTCTGCAATATGAGGGG 58.590 50.000 5.76 0.00 34.84 4.79
83 84 1.770658 TGACTCTGCAATATGAGGGGG 59.229 52.381 5.76 0.00 34.84 5.40
99 100 0.324275 GGGGGCCACACAACATATGT 60.324 55.000 7.65 1.41 45.34 2.29
137 138 3.495434 TTGGGGTATGTTGTTCGAGTT 57.505 42.857 0.00 0.00 0.00 3.01
138 139 4.620589 TTGGGGTATGTTGTTCGAGTTA 57.379 40.909 0.00 0.00 0.00 2.24
200 201 3.384146 GGACCTTACTACTACTTCAGGCC 59.616 52.174 0.00 0.00 0.00 5.19
213 235 2.447408 TCAGGCCGGACAGAGTAATA 57.553 50.000 11.69 0.00 0.00 0.98
219 241 6.042781 TCAGGCCGGACAGAGTAATAAAATAT 59.957 38.462 11.69 0.00 0.00 1.28
222 244 6.879458 GGCCGGACAGAGTAATAAAATATGAT 59.121 38.462 5.05 0.00 0.00 2.45
251 273 7.268586 CAAGTTTAGAGAAGGCTAGCTAATCA 58.731 38.462 15.72 0.00 0.00 2.57
365 387 0.898320 AGCTAGACAATGAGGTGCGT 59.102 50.000 0.00 0.00 0.00 5.24
372 394 2.228822 GACAATGAGGTGCGTGGAAATT 59.771 45.455 0.00 0.00 0.00 1.82
383 405 5.506649 GGTGCGTGGAAATTTCTGAAGTTTA 60.507 40.000 17.42 0.00 0.00 2.01
449 471 2.032799 GGTCTTTGTTGATGCGTGTCAA 59.967 45.455 1.28 1.28 35.84 3.18
454 476 2.627791 TTGATGCGTGTCAACTGGG 58.372 52.632 1.28 0.00 33.41 4.45
455 477 0.107643 TTGATGCGTGTCAACTGGGA 59.892 50.000 1.28 0.00 33.41 4.37
480 502 5.815740 ACTGGGTTGTGAATATAACGATGAC 59.184 40.000 0.00 0.00 0.00 3.06
481 503 5.984725 TGGGTTGTGAATATAACGATGACT 58.015 37.500 0.00 0.00 0.00 3.41
517 539 4.565166 GTGCAACTGCTTGTACGTATATCA 59.435 41.667 0.00 0.00 42.66 2.15
519 541 4.317139 GCAACTGCTTGTACGTATATCACG 60.317 45.833 0.00 0.00 46.55 4.35
534 556 2.046892 ACGCTCTGTGCATGGGAC 60.047 61.111 2.42 0.00 43.06 4.46
556 578 4.236935 CGTGGCTACAAATTCAGCATTTT 58.763 39.130 0.00 0.00 39.63 1.82
557 579 4.685628 CGTGGCTACAAATTCAGCATTTTT 59.314 37.500 0.00 0.00 39.63 1.94
560 582 4.327087 GGCTACAAATTCAGCATTTTTCCG 59.673 41.667 8.41 0.00 39.63 4.30
644 667 2.554032 GTTAACAGTTCAGCAGCACCAT 59.446 45.455 0.00 0.00 0.00 3.55
694 717 0.955428 CTCCAGTTTTGCTAGCGCCA 60.955 55.000 10.77 0.00 34.43 5.69
706 729 2.359900 CTAGCGCCAGGTCATTTTCTT 58.640 47.619 2.29 0.00 0.00 2.52
768 791 1.404181 GGAAGAAAGGCCCATTTTCGC 60.404 52.381 0.00 1.47 39.07 4.70
794 817 0.804989 GCTGGTGCATTACAGTCCAC 59.195 55.000 14.72 0.00 39.41 4.02
814 837 0.679002 CCAGTCTGGCTCAATGGTGG 60.679 60.000 5.79 0.00 0.00 4.61
864 887 6.176975 TGATATTTGTTAGCAACGACTTGG 57.823 37.500 0.00 0.00 33.82 3.61
918 953 1.827969 CGATTTCTCCCTCTCCACACT 59.172 52.381 0.00 0.00 0.00 3.55
920 955 3.447586 CGATTTCTCCCTCTCCACACTAA 59.552 47.826 0.00 0.00 0.00 2.24
1167 1205 1.681780 CCACATATCCAGGCGGTGTTT 60.682 52.381 0.00 0.00 0.00 2.83
1249 1287 4.710167 TCAGGGACGCGGTCGAGA 62.710 66.667 12.47 0.00 39.41 4.04
1340 1378 2.040412 GTGAATGGGGTTCTCCTCTTGT 59.960 50.000 0.00 0.00 37.72 3.16
1365 1403 3.567164 AGATGAAGCACAAGTTTGTCAGG 59.433 43.478 0.00 0.00 39.91 3.86
1369 1407 2.565841 AGCACAAGTTTGTCAGGTCTC 58.434 47.619 0.00 0.00 39.91 3.36
1416 1460 8.041323 ACTATCAAGAAAATTAGTCACCGTGAT 58.959 33.333 4.13 0.00 0.00 3.06
1754 1807 3.713764 ACTACCTTGGCTCAGAGCATATT 59.286 43.478 24.09 6.40 44.75 1.28
1755 1808 2.928334 ACCTTGGCTCAGAGCATATTG 58.072 47.619 24.09 10.19 44.75 1.90
1756 1809 2.240667 ACCTTGGCTCAGAGCATATTGT 59.759 45.455 24.09 10.80 44.75 2.71
1757 1810 3.285484 CCTTGGCTCAGAGCATATTGTT 58.715 45.455 24.09 0.00 44.75 2.83
1759 1812 3.632643 TGGCTCAGAGCATATTGTTGA 57.367 42.857 24.09 0.00 44.75 3.18
1761 1814 3.943381 TGGCTCAGAGCATATTGTTGAAG 59.057 43.478 24.09 0.00 44.75 3.02
1762 1815 3.944015 GGCTCAGAGCATATTGTTGAAGT 59.056 43.478 24.09 0.00 44.75 3.01
1765 1818 6.931281 GGCTCAGAGCATATTGTTGAAGTATA 59.069 38.462 24.09 0.00 44.75 1.47
1766 1819 7.605691 GGCTCAGAGCATATTGTTGAAGTATAT 59.394 37.037 24.09 0.00 44.75 0.86
1767 1820 8.997323 GCTCAGAGCATATTGTTGAAGTATATT 58.003 33.333 18.17 0.00 41.89 1.28
1769 1822 8.777413 TCAGAGCATATTGTTGAAGTATATTGC 58.223 33.333 0.00 0.00 0.00 3.56
1770 1823 8.019669 CAGAGCATATTGTTGAAGTATATTGCC 58.980 37.037 0.00 0.00 0.00 4.52
1772 1825 6.072508 AGCATATTGTTGAAGTATATTGCCCG 60.073 38.462 0.00 0.00 0.00 6.13
1773 1826 4.568152 ATTGTTGAAGTATATTGCCCGC 57.432 40.909 0.00 0.00 0.00 6.13
1774 1827 2.294074 TGTTGAAGTATATTGCCCGCC 58.706 47.619 0.00 0.00 0.00 6.13
1775 1828 2.092646 TGTTGAAGTATATTGCCCGCCT 60.093 45.455 0.00 0.00 0.00 5.52
1776 1829 2.543777 TGAAGTATATTGCCCGCCTC 57.456 50.000 0.00 0.00 0.00 4.70
1777 1830 2.047061 TGAAGTATATTGCCCGCCTCT 58.953 47.619 0.00 0.00 0.00 3.69
1778 1831 2.037251 TGAAGTATATTGCCCGCCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
1780 1833 1.896465 AGTATATTGCCCGCCTCTCTC 59.104 52.381 0.00 0.00 0.00 3.20
1781 1834 1.066787 GTATATTGCCCGCCTCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
1782 1835 0.764369 ATATTGCCCGCCTCTCTCCA 60.764 55.000 0.00 0.00 0.00 3.86
1783 1836 0.764369 TATTGCCCGCCTCTCTCCAT 60.764 55.000 0.00 0.00 0.00 3.41
1784 1837 2.049627 ATTGCCCGCCTCTCTCCATC 62.050 60.000 0.00 0.00 0.00 3.51
1785 1838 3.157252 GCCCGCCTCTCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
1786 1839 3.136750 CCCGCCTCTCTCCATCAG 58.863 66.667 0.00 0.00 0.00 2.90
1787 1840 1.760086 CCCGCCTCTCTCCATCAGT 60.760 63.158 0.00 0.00 0.00 3.41
1788 1841 1.333636 CCCGCCTCTCTCCATCAGTT 61.334 60.000 0.00 0.00 0.00 3.16
1789 1842 0.103937 CCGCCTCTCTCCATCAGTTC 59.896 60.000 0.00 0.00 0.00 3.01
1790 1843 0.248825 CGCCTCTCTCCATCAGTTCG 60.249 60.000 0.00 0.00 0.00 3.95
1791 1844 0.103937 GCCTCTCTCCATCAGTTCGG 59.896 60.000 0.00 0.00 0.00 4.30
1792 1845 1.769026 CCTCTCTCCATCAGTTCGGA 58.231 55.000 0.00 0.00 0.00 4.55
1793 1846 1.407258 CCTCTCTCCATCAGTTCGGAC 59.593 57.143 0.00 0.00 0.00 4.79
1794 1847 2.374184 CTCTCTCCATCAGTTCGGACT 58.626 52.381 0.00 0.00 36.25 3.85
1795 1848 2.757868 CTCTCTCCATCAGTTCGGACTT 59.242 50.000 0.00 0.00 32.54 3.01
1796 1849 3.165875 TCTCTCCATCAGTTCGGACTTT 58.834 45.455 0.00 0.00 32.54 2.66
1797 1850 3.578716 TCTCTCCATCAGTTCGGACTTTT 59.421 43.478 0.00 0.00 32.54 2.27
1798 1851 3.664107 TCTCCATCAGTTCGGACTTTTG 58.336 45.455 0.00 0.00 32.54 2.44
1799 1852 2.744202 CTCCATCAGTTCGGACTTTTGG 59.256 50.000 13.60 13.60 36.98 3.28
1800 1853 2.370519 TCCATCAGTTCGGACTTTTGGA 59.629 45.455 17.13 17.13 39.94 3.53
1801 1854 3.009033 TCCATCAGTTCGGACTTTTGGAT 59.991 43.478 17.13 4.78 38.50 3.41
1802 1855 3.127548 CCATCAGTTCGGACTTTTGGATG 59.872 47.826 14.35 13.52 37.46 3.51
1803 1856 3.762407 TCAGTTCGGACTTTTGGATGA 57.238 42.857 0.00 0.00 32.54 2.92
1804 1857 3.664107 TCAGTTCGGACTTTTGGATGAG 58.336 45.455 0.00 0.00 32.54 2.90
1805 1858 3.071023 TCAGTTCGGACTTTTGGATGAGT 59.929 43.478 0.00 0.00 32.54 3.41
1806 1859 3.815401 CAGTTCGGACTTTTGGATGAGTT 59.185 43.478 0.00 0.00 32.54 3.01
1807 1860 3.815401 AGTTCGGACTTTTGGATGAGTTG 59.185 43.478 0.00 0.00 29.87 3.16
1808 1861 2.778299 TCGGACTTTTGGATGAGTTGG 58.222 47.619 0.00 0.00 0.00 3.77
1809 1862 1.200020 CGGACTTTTGGATGAGTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
1810 1863 2.519013 GGACTTTTGGATGAGTTGGCT 58.481 47.619 0.00 0.00 0.00 4.75
1811 1864 2.229784 GGACTTTTGGATGAGTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
1812 1865 2.229784 GACTTTTGGATGAGTTGGCTGG 59.770 50.000 0.00 0.00 0.00 4.85
1813 1866 2.158475 ACTTTTGGATGAGTTGGCTGGA 60.158 45.455 0.00 0.00 0.00 3.86
1814 1867 2.205022 TTTGGATGAGTTGGCTGGAG 57.795 50.000 0.00 0.00 0.00 3.86
1815 1868 1.067295 TTGGATGAGTTGGCTGGAGT 58.933 50.000 0.00 0.00 0.00 3.85
1816 1869 1.951209 TGGATGAGTTGGCTGGAGTA 58.049 50.000 0.00 0.00 0.00 2.59
1817 1870 2.481441 TGGATGAGTTGGCTGGAGTAT 58.519 47.619 0.00 0.00 0.00 2.12
1818 1871 2.171237 TGGATGAGTTGGCTGGAGTATG 59.829 50.000 0.00 0.00 0.00 2.39
1819 1872 2.435805 GGATGAGTTGGCTGGAGTATGA 59.564 50.000 0.00 0.00 0.00 2.15
1820 1873 3.118261 GGATGAGTTGGCTGGAGTATGAA 60.118 47.826 0.00 0.00 0.00 2.57
1821 1874 4.445448 GGATGAGTTGGCTGGAGTATGAAT 60.445 45.833 0.00 0.00 0.00 2.57
1822 1875 4.574674 TGAGTTGGCTGGAGTATGAATT 57.425 40.909 0.00 0.00 0.00 2.17
1823 1876 4.517285 TGAGTTGGCTGGAGTATGAATTC 58.483 43.478 0.00 0.00 0.00 2.17
1824 1877 4.019411 TGAGTTGGCTGGAGTATGAATTCA 60.019 41.667 11.26 11.26 0.00 2.57
1825 1878 4.922206 AGTTGGCTGGAGTATGAATTCAA 58.078 39.130 13.09 0.00 0.00 2.69
1826 1879 5.513233 AGTTGGCTGGAGTATGAATTCAAT 58.487 37.500 13.09 1.32 0.00 2.57
1827 1880 6.662755 AGTTGGCTGGAGTATGAATTCAATA 58.337 36.000 13.09 3.10 0.00 1.90
1828 1881 7.293073 AGTTGGCTGGAGTATGAATTCAATAT 58.707 34.615 13.09 0.54 0.00 1.28
1829 1882 7.230108 AGTTGGCTGGAGTATGAATTCAATATG 59.770 37.037 13.09 1.09 0.00 1.78
1830 1883 6.005823 TGGCTGGAGTATGAATTCAATATGG 58.994 40.000 13.09 1.60 0.00 2.74
1831 1884 6.006449 GGCTGGAGTATGAATTCAATATGGT 58.994 40.000 13.09 0.00 0.00 3.55
1832 1885 7.168219 GGCTGGAGTATGAATTCAATATGGTA 58.832 38.462 13.09 0.00 0.00 3.25
1833 1886 7.831193 GGCTGGAGTATGAATTCAATATGGTAT 59.169 37.037 13.09 0.00 0.00 2.73
1834 1887 8.887717 GCTGGAGTATGAATTCAATATGGTATC 58.112 37.037 13.09 2.80 0.00 2.24
1835 1888 9.948964 CTGGAGTATGAATTCAATATGGTATCA 57.051 33.333 13.09 2.36 0.00 2.15
1836 1889 9.948964 TGGAGTATGAATTCAATATGGTATCAG 57.051 33.333 13.09 0.00 0.00 2.90
1839 1892 9.664332 AGTATGAATTCAATATGGTATCAGAGC 57.336 33.333 13.09 0.00 0.00 4.09
1840 1893 7.934855 ATGAATTCAATATGGTATCAGAGCC 57.065 36.000 13.09 0.00 0.00 4.70
1841 1894 6.840527 TGAATTCAATATGGTATCAGAGCCA 58.159 36.000 5.45 0.00 39.33 4.75
1842 1895 7.289310 TGAATTCAATATGGTATCAGAGCCAA 58.711 34.615 5.45 0.00 38.38 4.52
1843 1896 7.446319 TGAATTCAATATGGTATCAGAGCCAAG 59.554 37.037 5.45 0.00 38.38 3.61
1844 1897 6.499106 TTCAATATGGTATCAGAGCCAAGA 57.501 37.500 1.06 0.00 38.38 3.02
1845 1898 6.106648 TCAATATGGTATCAGAGCCAAGAG 57.893 41.667 1.06 0.00 38.38 2.85
1846 1899 5.012458 TCAATATGGTATCAGAGCCAAGAGG 59.988 44.000 1.06 0.00 38.38 3.69
1847 1900 2.254152 TGGTATCAGAGCCAAGAGGT 57.746 50.000 0.00 0.00 37.19 3.85
1848 1901 2.111384 TGGTATCAGAGCCAAGAGGTC 58.889 52.381 0.00 0.00 43.67 3.85
1867 1920 3.725754 TTGAGTTCAAGACCCTGCC 57.274 52.632 0.00 0.00 0.00 4.85
1868 1921 0.843309 TTGAGTTCAAGACCCTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
1869 1922 0.843309 TGAGTTCAAGACCCTGCCAA 59.157 50.000 0.00 0.00 0.00 4.52
1870 1923 1.239347 GAGTTCAAGACCCTGCCAAC 58.761 55.000 0.00 0.00 0.00 3.77
1871 1924 0.535102 AGTTCAAGACCCTGCCAACG 60.535 55.000 0.00 0.00 0.00 4.10
1872 1925 1.896660 TTCAAGACCCTGCCAACGC 60.897 57.895 0.00 0.00 0.00 4.84
1873 1926 2.594303 CAAGACCCTGCCAACGCA 60.594 61.111 0.00 0.00 44.78 5.24
1901 1954 3.363787 AAAAAGGATTCTGCGGCCT 57.636 47.368 0.00 0.00 0.00 5.19
1902 1955 2.507407 AAAAAGGATTCTGCGGCCTA 57.493 45.000 0.00 0.00 0.00 3.93
1903 1956 2.736670 AAAAGGATTCTGCGGCCTAT 57.263 45.000 0.00 0.00 0.00 2.57
1904 1957 3.857157 AAAAGGATTCTGCGGCCTATA 57.143 42.857 0.00 0.00 0.00 1.31
1905 1958 4.373156 AAAAGGATTCTGCGGCCTATAT 57.627 40.909 0.00 0.00 0.00 0.86
1906 1959 5.499004 AAAAGGATTCTGCGGCCTATATA 57.501 39.130 0.00 0.00 0.00 0.86
1907 1960 5.499004 AAAGGATTCTGCGGCCTATATAA 57.501 39.130 0.00 0.00 0.00 0.98
1908 1961 5.499004 AAGGATTCTGCGGCCTATATAAA 57.501 39.130 0.00 0.00 0.00 1.40
1909 1962 5.700402 AGGATTCTGCGGCCTATATAAAT 57.300 39.130 0.00 0.00 0.00 1.40
1910 1963 6.067217 AGGATTCTGCGGCCTATATAAATT 57.933 37.500 0.00 0.00 0.00 1.82
1911 1964 6.116126 AGGATTCTGCGGCCTATATAAATTC 58.884 40.000 0.00 0.00 0.00 2.17
1912 1965 5.297029 GGATTCTGCGGCCTATATAAATTCC 59.703 44.000 0.00 0.00 0.00 3.01
1913 1966 4.901197 TCTGCGGCCTATATAAATTCCA 57.099 40.909 0.00 0.00 0.00 3.53
1914 1967 4.575885 TCTGCGGCCTATATAAATTCCAC 58.424 43.478 0.00 0.00 0.00 4.02
1915 1968 3.331150 TGCGGCCTATATAAATTCCACG 58.669 45.455 0.00 0.00 0.00 4.94
1916 1969 3.244284 TGCGGCCTATATAAATTCCACGT 60.244 43.478 0.00 0.00 0.00 4.49
1917 1970 3.370061 GCGGCCTATATAAATTCCACGTC 59.630 47.826 0.00 0.00 0.00 4.34
1918 1971 4.817517 CGGCCTATATAAATTCCACGTCT 58.182 43.478 0.00 0.00 0.00 4.18
1919 1972 5.622914 GCGGCCTATATAAATTCCACGTCTA 60.623 44.000 0.00 0.00 0.00 2.59
1920 1973 6.392354 CGGCCTATATAAATTCCACGTCTAA 58.608 40.000 0.00 0.00 0.00 2.10
1921 1974 6.530534 CGGCCTATATAAATTCCACGTCTAAG 59.469 42.308 0.00 0.00 0.00 2.18
1922 1975 7.576287 CGGCCTATATAAATTCCACGTCTAAGA 60.576 40.741 0.00 0.00 0.00 2.10
1923 1976 7.760340 GGCCTATATAAATTCCACGTCTAAGAG 59.240 40.741 0.00 0.00 0.00 2.85
1924 1977 7.275999 GCCTATATAAATTCCACGTCTAAGAGC 59.724 40.741 0.00 0.00 0.00 4.09
1925 1978 8.524487 CCTATATAAATTCCACGTCTAAGAGCT 58.476 37.037 0.00 0.00 0.00 4.09
1932 1985 8.649973 AATTCCACGTCTAAGAGCTAATTAAG 57.350 34.615 0.00 0.00 0.00 1.85
1945 1998 4.299978 GCTAATTAAGCCTAGACGTGAGG 58.700 47.826 8.49 8.49 46.25 3.86
1946 1999 3.821421 AATTAAGCCTAGACGTGAGGG 57.179 47.619 13.64 4.42 34.35 4.30
1947 2000 1.481871 TTAAGCCTAGACGTGAGGGG 58.518 55.000 13.64 2.79 34.35 4.79
1948 2001 0.396695 TAAGCCTAGACGTGAGGGGG 60.397 60.000 13.64 1.18 34.35 5.40
1967 2020 2.956333 GGGGGTGTTGAAGTATATTGCC 59.044 50.000 0.00 0.00 0.00 4.52
1968 2021 2.956333 GGGGTGTTGAAGTATATTGCCC 59.044 50.000 0.00 0.00 0.00 5.36
1969 2022 2.616842 GGGTGTTGAAGTATATTGCCCG 59.383 50.000 0.00 0.00 0.00 6.13
1970 2023 2.032924 GGTGTTGAAGTATATTGCCCGC 59.967 50.000 0.00 0.00 0.00 6.13
1971 2024 2.032924 GTGTTGAAGTATATTGCCCGCC 59.967 50.000 0.00 0.00 0.00 6.13
1972 2025 2.092646 TGTTGAAGTATATTGCCCGCCT 60.093 45.455 0.00 0.00 0.00 5.52
1973 2026 2.543777 TGAAGTATATTGCCCGCCTC 57.456 50.000 0.00 0.00 0.00 4.70
1974 2027 2.047061 TGAAGTATATTGCCCGCCTCT 58.953 47.619 0.00 0.00 0.00 3.69
1975 2028 2.037251 TGAAGTATATTGCCCGCCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
1976 2029 2.016905 AGTATATTGCCCGCCTCTCT 57.983 50.000 0.00 0.00 0.00 3.10
1977 2030 1.896465 AGTATATTGCCCGCCTCTCTC 59.104 52.381 0.00 0.00 0.00 3.20
1978 2031 1.066787 GTATATTGCCCGCCTCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
1979 2032 0.764369 ATATTGCCCGCCTCTCTCCA 60.764 55.000 0.00 0.00 0.00 3.86
1980 2033 0.764369 TATTGCCCGCCTCTCTCCAT 60.764 55.000 0.00 0.00 0.00 3.41
1981 2034 2.049627 ATTGCCCGCCTCTCTCCATC 62.050 60.000 0.00 0.00 0.00 3.51
1982 2035 3.157252 GCCCGCCTCTCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
1983 2036 3.136750 CCCGCCTCTCTCCATCAG 58.863 66.667 0.00 0.00 0.00 2.90
1984 2037 1.760086 CCCGCCTCTCTCCATCAGT 60.760 63.158 0.00 0.00 0.00 3.41
1985 2038 1.333636 CCCGCCTCTCTCCATCAGTT 61.334 60.000 0.00 0.00 0.00 3.16
1986 2039 0.103937 CCGCCTCTCTCCATCAGTTC 59.896 60.000 0.00 0.00 0.00 3.01
1987 2040 0.248825 CGCCTCTCTCCATCAGTTCG 60.249 60.000 0.00 0.00 0.00 3.95
1988 2041 0.103937 GCCTCTCTCCATCAGTTCGG 59.896 60.000 0.00 0.00 0.00 4.30
1989 2042 1.769026 CCTCTCTCCATCAGTTCGGA 58.231 55.000 0.00 0.00 0.00 4.55
1990 2043 1.407258 CCTCTCTCCATCAGTTCGGAC 59.593 57.143 0.00 0.00 0.00 4.79
1991 2044 2.374184 CTCTCTCCATCAGTTCGGACT 58.626 52.381 0.00 0.00 36.25 3.85
1992 2045 2.757868 CTCTCTCCATCAGTTCGGACTT 59.242 50.000 0.00 0.00 32.54 3.01
1993 2046 3.165875 TCTCTCCATCAGTTCGGACTTT 58.834 45.455 0.00 0.00 32.54 2.66
1994 2047 3.578716 TCTCTCCATCAGTTCGGACTTTT 59.421 43.478 0.00 0.00 32.54 2.27
1995 2048 3.664107 TCTCCATCAGTTCGGACTTTTG 58.336 45.455 0.00 0.00 32.54 2.44
1996 2049 2.744202 CTCCATCAGTTCGGACTTTTGG 59.256 50.000 13.60 13.60 36.98 3.28
1997 2050 2.370519 TCCATCAGTTCGGACTTTTGGA 59.629 45.455 17.13 17.13 39.94 3.53
1998 2051 3.009033 TCCATCAGTTCGGACTTTTGGAT 59.991 43.478 17.13 4.78 38.50 3.41
1999 2052 3.127548 CCATCAGTTCGGACTTTTGGATG 59.872 47.826 14.35 13.52 37.46 3.51
2000 2053 3.762407 TCAGTTCGGACTTTTGGATGA 57.238 42.857 0.00 0.00 32.54 2.92
2001 2054 3.664107 TCAGTTCGGACTTTTGGATGAG 58.336 45.455 0.00 0.00 32.54 2.90
2002 2055 3.071023 TCAGTTCGGACTTTTGGATGAGT 59.929 43.478 0.00 0.00 32.54 3.41
2003 2056 3.815401 CAGTTCGGACTTTTGGATGAGTT 59.185 43.478 0.00 0.00 32.54 3.01
2004 2057 3.815401 AGTTCGGACTTTTGGATGAGTTG 59.185 43.478 0.00 0.00 29.87 3.16
2005 2058 2.778299 TCGGACTTTTGGATGAGTTGG 58.222 47.619 0.00 0.00 0.00 3.77
2006 2059 1.200020 CGGACTTTTGGATGAGTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
2007 2060 2.519013 GGACTTTTGGATGAGTTGGCT 58.481 47.619 0.00 0.00 0.00 4.75
2008 2061 2.229784 GGACTTTTGGATGAGTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
2009 2062 3.149196 GACTTTTGGATGAGTTGGCTGA 58.851 45.455 0.00 0.00 0.00 4.26
2010 2063 3.565307 ACTTTTGGATGAGTTGGCTGAA 58.435 40.909 0.00 0.00 0.00 3.02
2011 2064 3.571401 ACTTTTGGATGAGTTGGCTGAAG 59.429 43.478 0.00 0.00 0.00 3.02
2014 2067 4.574674 TTGGATGAGTTGGCTGAAGTAT 57.425 40.909 0.00 0.00 0.00 2.12
2152 2205 3.744660 ACCTCAAAGAGAAACTCGCATT 58.255 40.909 0.00 0.00 35.36 3.56
2315 2369 2.353610 GGCTGCAAAGGTGATGGGG 61.354 63.158 0.50 0.00 0.00 4.96
2510 2567 4.290969 CTGAGCATCTGCAAAGCAATATG 58.709 43.478 4.79 8.73 45.16 1.78
2528 2585 6.686378 GCAATATGACACCTGAATACTGGAGA 60.686 42.308 0.00 0.00 38.29 3.71
2633 2690 4.357918 ACCAACAGAGCTACAGATTTGT 57.642 40.909 0.00 0.00 41.39 2.83
2682 2739 7.466050 CGCAGGACTATAGATTTGGAAAGAAAC 60.466 40.741 6.78 0.00 0.00 2.78
2708 2765 2.299867 GGTGCAAATGTGGATTGGTTCT 59.700 45.455 0.00 0.00 0.00 3.01
2714 2771 5.105392 GCAAATGTGGATTGGTTCTGGATTA 60.105 40.000 0.00 0.00 0.00 1.75
2747 2813 4.279420 GGCATTCAATCTTTGGAGGATACC 59.721 45.833 0.00 0.00 37.17 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.501128 CCGGAGCATCATGACCGT 59.499 61.111 18.06 0.00 43.22 4.83
3 4 2.969238 GCCGGAGCATCATGACCG 60.969 66.667 5.05 13.96 44.16 4.79
5 6 1.153289 ACAGCCGGAGCATCATGAC 60.153 57.895 5.05 0.00 43.56 3.06
6 7 1.153309 CACAGCCGGAGCATCATGA 60.153 57.895 5.05 0.00 43.56 3.07
7 8 2.831366 GCACAGCCGGAGCATCATG 61.831 63.158 5.05 0.00 43.56 3.07
8 9 2.515523 GCACAGCCGGAGCATCAT 60.516 61.111 5.05 0.00 43.56 2.45
9 10 3.709633 AGCACAGCCGGAGCATCA 61.710 61.111 5.05 0.00 43.56 3.07
10 11 3.200593 CAGCACAGCCGGAGCATC 61.201 66.667 5.05 0.00 43.56 3.91
11 12 4.790962 CCAGCACAGCCGGAGCAT 62.791 66.667 5.05 0.00 43.56 3.79
14 15 4.767255 GACCCAGCACAGCCGGAG 62.767 72.222 5.05 0.00 0.00 4.63
18 19 4.101448 ATCCGACCCAGCACAGCC 62.101 66.667 0.00 0.00 0.00 4.85
19 20 2.512515 GATCCGACCCAGCACAGC 60.513 66.667 0.00 0.00 0.00 4.40
20 21 0.460987 GAAGATCCGACCCAGCACAG 60.461 60.000 0.00 0.00 0.00 3.66
21 22 1.596934 GAAGATCCGACCCAGCACA 59.403 57.895 0.00 0.00 0.00 4.57
22 23 1.519455 CGAAGATCCGACCCAGCAC 60.519 63.158 0.00 0.00 0.00 4.40
23 24 1.982395 ACGAAGATCCGACCCAGCA 60.982 57.895 0.00 0.00 0.00 4.41
24 25 1.519455 CACGAAGATCCGACCCAGC 60.519 63.158 0.00 0.00 0.00 4.85
25 26 0.179134 GTCACGAAGATCCGACCCAG 60.179 60.000 0.00 0.00 0.00 4.45
26 27 0.611062 AGTCACGAAGATCCGACCCA 60.611 55.000 0.00 0.00 0.00 4.51
27 28 0.100861 GAGTCACGAAGATCCGACCC 59.899 60.000 0.00 0.00 0.00 4.46
28 29 1.096416 AGAGTCACGAAGATCCGACC 58.904 55.000 0.00 0.00 0.00 4.79
29 30 1.795889 GCAGAGTCACGAAGATCCGAC 60.796 57.143 0.00 0.00 0.00 4.79
30 31 0.452184 GCAGAGTCACGAAGATCCGA 59.548 55.000 0.00 0.00 0.00 4.55
31 32 0.171231 TGCAGAGTCACGAAGATCCG 59.829 55.000 0.00 0.00 0.00 4.18
32 33 2.094494 TCTTGCAGAGTCACGAAGATCC 60.094 50.000 0.00 0.00 0.00 3.36
33 34 3.223423 TCTTGCAGAGTCACGAAGATC 57.777 47.619 0.00 0.00 0.00 2.75
34 35 3.883830 ATCTTGCAGAGTCACGAAGAT 57.116 42.857 0.00 0.00 0.00 2.40
35 36 3.667497 AATCTTGCAGAGTCACGAAGA 57.333 42.857 0.00 0.00 0.00 2.87
36 37 3.496130 ACAAATCTTGCAGAGTCACGAAG 59.504 43.478 0.00 0.00 0.00 3.79
37 38 3.466836 ACAAATCTTGCAGAGTCACGAA 58.533 40.909 0.00 0.00 0.00 3.85
38 39 3.059884 GACAAATCTTGCAGAGTCACGA 58.940 45.455 0.00 0.00 0.00 4.35
39 40 2.158449 GGACAAATCTTGCAGAGTCACG 59.842 50.000 0.00 0.00 0.00 4.35
40 41 2.485814 GGGACAAATCTTGCAGAGTCAC 59.514 50.000 0.00 0.00 0.00 3.67
41 42 2.106338 TGGGACAAATCTTGCAGAGTCA 59.894 45.455 0.00 0.00 31.92 3.41
42 43 2.783135 TGGGACAAATCTTGCAGAGTC 58.217 47.619 0.00 0.00 31.92 3.36
43 44 2.957402 TGGGACAAATCTTGCAGAGT 57.043 45.000 0.00 0.00 31.92 3.24
56 57 3.455543 TCATATTGCAGAGTCATGGGACA 59.544 43.478 0.00 0.00 46.80 4.02
57 58 4.063689 CTCATATTGCAGAGTCATGGGAC 58.936 47.826 0.00 0.00 44.66 4.46
58 59 3.072038 CCTCATATTGCAGAGTCATGGGA 59.928 47.826 0.00 0.00 0.00 4.37
59 60 3.409570 CCTCATATTGCAGAGTCATGGG 58.590 50.000 0.00 0.00 0.00 4.00
60 61 3.409570 CCCTCATATTGCAGAGTCATGG 58.590 50.000 0.00 0.00 0.00 3.66
61 62 3.409570 CCCCTCATATTGCAGAGTCATG 58.590 50.000 0.00 0.00 0.00 3.07
62 63 2.374504 CCCCCTCATATTGCAGAGTCAT 59.625 50.000 0.00 0.00 0.00 3.06
63 64 1.770658 CCCCCTCATATTGCAGAGTCA 59.229 52.381 0.00 0.00 0.00 3.41
64 65 2.557920 CCCCCTCATATTGCAGAGTC 57.442 55.000 0.61 0.00 0.00 3.36
80 81 0.324275 ACATATGTTGTGTGGCCCCC 60.324 55.000 1.41 0.00 37.11 5.40
81 82 1.555967 AACATATGTTGTGTGGCCCC 58.444 50.000 20.19 0.00 38.99 5.80
91 92 3.298320 GGGGGCCACAACATATGTT 57.702 52.632 15.47 15.47 41.46 2.71
137 138 3.706855 TGCTCGTGCACCCTCATA 58.293 55.556 12.15 0.00 45.31 2.15
163 164 0.394352 GGTCCACATTTGGCCTCGAT 60.394 55.000 3.32 0.00 43.56 3.59
164 165 1.002624 GGTCCACATTTGGCCTCGA 60.003 57.895 3.32 0.00 43.56 4.04
219 241 6.054860 AGCCTTCTCTAAACTTGCTTATCA 57.945 37.500 0.00 0.00 0.00 2.15
222 244 5.187967 AGCTAGCCTTCTCTAAACTTGCTTA 59.812 40.000 12.13 0.00 36.30 3.09
251 273 1.246649 TTCTTGCGCCATTGTGACAT 58.753 45.000 4.18 0.00 0.00 3.06
304 326 3.040147 AGGTAACATCGTCACCAACTG 57.960 47.619 0.00 0.00 41.41 3.16
315 337 5.892568 TCTTCTCGCTTTCTAGGTAACATC 58.107 41.667 0.00 0.00 41.41 3.06
365 387 8.912988 ACAACATCTAAACTTCAGAAATTTCCA 58.087 29.630 14.61 0.00 0.00 3.53
372 394 8.208224 TGGAACTACAACATCTAAACTTCAGAA 58.792 33.333 0.00 0.00 0.00 3.02
383 405 9.342308 CCAATATAACATGGAACTACAACATCT 57.658 33.333 0.00 0.00 39.12 2.90
449 471 0.923358 TTCACAACCCAGTTCCCAGT 59.077 50.000 0.00 0.00 0.00 4.00
450 472 2.292828 ATTCACAACCCAGTTCCCAG 57.707 50.000 0.00 0.00 0.00 4.45
451 473 5.258051 GTTATATTCACAACCCAGTTCCCA 58.742 41.667 0.00 0.00 0.00 4.37
452 474 4.334481 CGTTATATTCACAACCCAGTTCCC 59.666 45.833 0.00 0.00 0.00 3.97
453 475 5.180271 TCGTTATATTCACAACCCAGTTCC 58.820 41.667 0.00 0.00 0.00 3.62
454 476 6.537301 TCATCGTTATATTCACAACCCAGTTC 59.463 38.462 0.00 0.00 0.00 3.01
455 477 6.315393 GTCATCGTTATATTCACAACCCAGTT 59.685 38.462 0.00 0.00 0.00 3.16
480 502 2.549754 AGTTGCACACGGAAGATTCAAG 59.450 45.455 0.00 0.00 0.00 3.02
481 503 2.290367 CAGTTGCACACGGAAGATTCAA 59.710 45.455 0.00 0.00 0.00 2.69
519 541 2.046892 ACGTCCCATGCACAGAGC 60.047 61.111 0.00 0.00 45.96 4.09
522 544 2.520465 TAGCCACGTCCCATGCACAG 62.520 60.000 0.00 0.00 0.00 3.66
534 556 3.492421 AATGCTGAATTTGTAGCCACG 57.508 42.857 7.53 0.00 39.15 4.94
556 578 0.982852 ATCTCTGATGGGGCACGGAA 60.983 55.000 0.00 0.00 0.00 4.30
557 579 1.383109 ATCTCTGATGGGGCACGGA 60.383 57.895 0.00 0.00 0.00 4.69
560 582 0.179034 GGTCATCTCTGATGGGGCAC 60.179 60.000 7.58 0.00 32.98 5.01
644 667 4.738198 GCTCAGCGCTGCACTATA 57.262 55.556 32.44 13.33 35.14 1.31
694 717 8.491045 TCCAAATTTAAGGAAGAAAATGACCT 57.509 30.769 0.00 0.00 0.00 3.85
706 729 6.377912 TGACCCTTTCTTCCAAATTTAAGGA 58.622 36.000 14.22 5.18 35.30 3.36
794 817 0.679002 CACCATTGAGCCAGACTGGG 60.679 60.000 23.09 6.86 38.19 4.45
814 837 6.073058 GGAAACTTCAAAGAAATTTCCATGGC 60.073 38.462 21.18 0.00 45.08 4.40
879 902 2.618241 TCGCTGAAGCAACTGTTCAATT 59.382 40.909 2.79 0.00 42.21 2.32
918 953 2.665008 CTAGCGCTGGGGCTGCATTA 62.665 60.000 22.90 0.00 44.50 1.90
920 955 4.559063 CTAGCGCTGGGGCTGCAT 62.559 66.667 22.90 0.00 44.50 3.96
1167 1205 1.691976 AGTTCTGGGTTGACGACATCA 59.308 47.619 0.00 0.00 34.65 3.07
1340 1378 6.238731 CCTGACAAACTTGTGCTTCATCTTAA 60.239 38.462 0.00 0.00 42.43 1.85
1365 1403 1.376553 GACAGCAGGGCCAAGAGAC 60.377 63.158 6.18 0.00 0.00 3.36
1369 1407 1.108727 TTGTTGACAGCAGGGCCAAG 61.109 55.000 6.18 0.00 0.00 3.61
1539 1589 3.986996 TCATTGTCCATGAGCTTCTGA 57.013 42.857 0.00 0.00 36.94 3.27
1597 1647 5.228945 TCTTTCTCCTTTTCTCGTCCAAT 57.771 39.130 0.00 0.00 0.00 3.16
1754 1807 2.092646 AGGCGGGCAATATACTTCAACA 60.093 45.455 3.78 0.00 0.00 3.33
1755 1808 2.548480 GAGGCGGGCAATATACTTCAAC 59.452 50.000 3.78 0.00 0.00 3.18
1756 1809 2.438021 AGAGGCGGGCAATATACTTCAA 59.562 45.455 3.78 0.00 0.00 2.69
1757 1810 2.037251 GAGAGGCGGGCAATATACTTCA 59.963 50.000 3.78 0.00 0.00 3.02
1759 1812 2.300437 GAGAGAGGCGGGCAATATACTT 59.700 50.000 3.78 0.00 0.00 2.24
1761 1814 1.066787 GGAGAGAGGCGGGCAATATAC 60.067 57.143 3.78 0.00 0.00 1.47
1762 1815 1.267121 GGAGAGAGGCGGGCAATATA 58.733 55.000 3.78 0.00 0.00 0.86
1765 1818 2.049627 GATGGAGAGAGGCGGGCAAT 62.050 60.000 3.78 0.00 0.00 3.56
1766 1819 2.688666 ATGGAGAGAGGCGGGCAA 60.689 61.111 3.78 0.00 0.00 4.52
1767 1820 3.157252 GATGGAGAGAGGCGGGCA 61.157 66.667 3.78 0.00 0.00 5.36
1769 1822 1.333636 AACTGATGGAGAGAGGCGGG 61.334 60.000 0.00 0.00 0.00 6.13
1770 1823 0.103937 GAACTGATGGAGAGAGGCGG 59.896 60.000 0.00 0.00 0.00 6.13
1772 1825 0.103937 CCGAACTGATGGAGAGAGGC 59.896 60.000 0.00 0.00 0.00 4.70
1773 1826 1.407258 GTCCGAACTGATGGAGAGAGG 59.593 57.143 0.00 0.00 34.21 3.69
1774 1827 2.374184 AGTCCGAACTGATGGAGAGAG 58.626 52.381 0.00 0.00 34.21 3.20
1775 1828 2.516227 AGTCCGAACTGATGGAGAGA 57.484 50.000 0.00 0.00 34.21 3.10
1776 1829 3.601443 AAAGTCCGAACTGATGGAGAG 57.399 47.619 0.00 0.00 35.36 3.20
1777 1830 3.557054 CCAAAAGTCCGAACTGATGGAGA 60.557 47.826 0.36 0.00 41.39 3.71
1778 1831 2.744202 CCAAAAGTCCGAACTGATGGAG 59.256 50.000 0.36 0.00 41.39 3.86
1780 1833 2.778299 TCCAAAAGTCCGAACTGATGG 58.222 47.619 0.24 0.24 40.74 3.51
1781 1834 4.002982 TCATCCAAAAGTCCGAACTGATG 58.997 43.478 0.00 0.00 35.25 3.07
1782 1835 4.256920 CTCATCCAAAAGTCCGAACTGAT 58.743 43.478 0.00 0.00 35.36 2.90
1783 1836 3.071023 ACTCATCCAAAAGTCCGAACTGA 59.929 43.478 0.00 0.00 35.36 3.41
1784 1837 3.403038 ACTCATCCAAAAGTCCGAACTG 58.597 45.455 0.00 0.00 35.36 3.16
1785 1838 3.771577 ACTCATCCAAAAGTCCGAACT 57.228 42.857 0.00 0.00 37.32 3.01
1786 1839 3.058224 CCAACTCATCCAAAAGTCCGAAC 60.058 47.826 0.00 0.00 0.00 3.95
1787 1840 3.146066 CCAACTCATCCAAAAGTCCGAA 58.854 45.455 0.00 0.00 0.00 4.30
1788 1841 2.778299 CCAACTCATCCAAAAGTCCGA 58.222 47.619 0.00 0.00 0.00 4.55
1789 1842 1.200020 GCCAACTCATCCAAAAGTCCG 59.800 52.381 0.00 0.00 0.00 4.79
1790 1843 2.229784 CAGCCAACTCATCCAAAAGTCC 59.770 50.000 0.00 0.00 0.00 3.85
1791 1844 2.229784 CCAGCCAACTCATCCAAAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
1792 1845 2.158475 TCCAGCCAACTCATCCAAAAGT 60.158 45.455 0.00 0.00 0.00 2.66
1793 1846 2.490903 CTCCAGCCAACTCATCCAAAAG 59.509 50.000 0.00 0.00 0.00 2.27
1794 1847 2.158475 ACTCCAGCCAACTCATCCAAAA 60.158 45.455 0.00 0.00 0.00 2.44
1795 1848 1.425066 ACTCCAGCCAACTCATCCAAA 59.575 47.619 0.00 0.00 0.00 3.28
1796 1849 1.067295 ACTCCAGCCAACTCATCCAA 58.933 50.000 0.00 0.00 0.00 3.53
1797 1850 1.951209 TACTCCAGCCAACTCATCCA 58.049 50.000 0.00 0.00 0.00 3.41
1798 1851 2.435805 TCATACTCCAGCCAACTCATCC 59.564 50.000 0.00 0.00 0.00 3.51
1799 1852 3.827008 TCATACTCCAGCCAACTCATC 57.173 47.619 0.00 0.00 0.00 2.92
1800 1853 4.785346 ATTCATACTCCAGCCAACTCAT 57.215 40.909 0.00 0.00 0.00 2.90
1801 1854 4.019411 TGAATTCATACTCCAGCCAACTCA 60.019 41.667 3.38 0.00 0.00 3.41
1802 1855 4.517285 TGAATTCATACTCCAGCCAACTC 58.483 43.478 3.38 0.00 0.00 3.01
1803 1856 4.574674 TGAATTCATACTCCAGCCAACT 57.425 40.909 3.38 0.00 0.00 3.16
1804 1857 5.841957 ATTGAATTCATACTCCAGCCAAC 57.158 39.130 9.40 0.00 0.00 3.77
1805 1858 6.491062 CCATATTGAATTCATACTCCAGCCAA 59.509 38.462 9.40 0.00 0.00 4.52
1806 1859 6.005823 CCATATTGAATTCATACTCCAGCCA 58.994 40.000 9.40 0.00 0.00 4.75
1807 1860 6.006449 ACCATATTGAATTCATACTCCAGCC 58.994 40.000 9.40 0.00 0.00 4.85
1808 1861 8.798859 ATACCATATTGAATTCATACTCCAGC 57.201 34.615 9.40 0.00 0.00 4.85
1809 1862 9.948964 TGATACCATATTGAATTCATACTCCAG 57.051 33.333 9.40 0.00 0.00 3.86
1810 1863 9.948964 CTGATACCATATTGAATTCATACTCCA 57.051 33.333 9.40 0.00 0.00 3.86
1813 1866 9.664332 GCTCTGATACCATATTGAATTCATACT 57.336 33.333 9.40 0.08 0.00 2.12
1814 1867 8.887717 GGCTCTGATACCATATTGAATTCATAC 58.112 37.037 9.40 0.00 0.00 2.39
1815 1868 8.605065 TGGCTCTGATACCATATTGAATTCATA 58.395 33.333 9.40 4.69 0.00 2.15
1816 1869 7.464273 TGGCTCTGATACCATATTGAATTCAT 58.536 34.615 9.40 2.50 0.00 2.57
1817 1870 6.840527 TGGCTCTGATACCATATTGAATTCA 58.159 36.000 3.38 3.38 0.00 2.57
1818 1871 7.663081 TCTTGGCTCTGATACCATATTGAATTC 59.337 37.037 0.00 0.00 35.42 2.17
1819 1872 7.520798 TCTTGGCTCTGATACCATATTGAATT 58.479 34.615 0.91 0.00 35.42 2.17
1820 1873 7.083062 TCTTGGCTCTGATACCATATTGAAT 57.917 36.000 0.91 0.00 35.42 2.57
1821 1874 6.464892 CCTCTTGGCTCTGATACCATATTGAA 60.465 42.308 0.91 0.00 35.42 2.69
1822 1875 5.012458 CCTCTTGGCTCTGATACCATATTGA 59.988 44.000 0.91 0.00 35.42 2.57
1823 1876 5.221803 ACCTCTTGGCTCTGATACCATATTG 60.222 44.000 0.91 0.00 35.42 1.90
1824 1877 4.910304 ACCTCTTGGCTCTGATACCATATT 59.090 41.667 0.91 0.00 35.42 1.28
1825 1878 4.497516 ACCTCTTGGCTCTGATACCATAT 58.502 43.478 0.91 0.00 35.42 1.78
1826 1879 3.898123 GACCTCTTGGCTCTGATACCATA 59.102 47.826 0.91 0.00 35.42 2.74
1827 1880 2.703007 GACCTCTTGGCTCTGATACCAT 59.297 50.000 0.91 0.00 35.42 3.55
1828 1881 2.111384 GACCTCTTGGCTCTGATACCA 58.889 52.381 0.00 0.00 36.63 3.25
1829 1882 2.393646 AGACCTCTTGGCTCTGATACC 58.606 52.381 0.00 0.00 36.63 2.73
1849 1902 0.843309 TGGCAGGGTCTTGAACTCAA 59.157 50.000 0.00 0.00 0.00 3.02
1850 1903 0.843309 TTGGCAGGGTCTTGAACTCA 59.157 50.000 0.00 0.00 0.00 3.41
1851 1904 1.239347 GTTGGCAGGGTCTTGAACTC 58.761 55.000 0.00 0.00 0.00 3.01
1852 1905 0.535102 CGTTGGCAGGGTCTTGAACT 60.535 55.000 0.00 0.00 0.00 3.01
1853 1906 1.949257 CGTTGGCAGGGTCTTGAAC 59.051 57.895 0.00 0.00 0.00 3.18
1854 1907 1.896660 GCGTTGGCAGGGTCTTGAA 60.897 57.895 0.00 0.00 39.62 2.69
1855 1908 2.281484 GCGTTGGCAGGGTCTTGA 60.281 61.111 0.00 0.00 39.62 3.02
1856 1909 2.594303 TGCGTTGGCAGGGTCTTG 60.594 61.111 0.00 0.00 46.21 3.02
1883 1936 2.507407 TAGGCCGCAGAATCCTTTTT 57.493 45.000 0.00 0.00 0.00 1.94
1884 1937 2.736670 ATAGGCCGCAGAATCCTTTT 57.263 45.000 0.00 0.00 0.00 2.27
1885 1938 5.499004 TTATATAGGCCGCAGAATCCTTT 57.501 39.130 0.00 0.00 0.00 3.11
1886 1939 5.499004 TTTATATAGGCCGCAGAATCCTT 57.501 39.130 0.00 0.00 0.00 3.36
1887 1940 5.700402 ATTTATATAGGCCGCAGAATCCT 57.300 39.130 0.00 0.00 0.00 3.24
1888 1941 5.297029 GGAATTTATATAGGCCGCAGAATCC 59.703 44.000 0.00 0.00 0.00 3.01
1889 1942 5.880332 TGGAATTTATATAGGCCGCAGAATC 59.120 40.000 0.00 0.00 0.00 2.52
1890 1943 5.648092 GTGGAATTTATATAGGCCGCAGAAT 59.352 40.000 0.00 0.00 0.00 2.40
1891 1944 5.001232 GTGGAATTTATATAGGCCGCAGAA 58.999 41.667 0.00 0.00 0.00 3.02
1892 1945 4.575885 GTGGAATTTATATAGGCCGCAGA 58.424 43.478 0.00 0.00 0.00 4.26
1893 1946 3.370978 CGTGGAATTTATATAGGCCGCAG 59.629 47.826 0.00 0.00 0.00 5.18
1894 1947 3.244284 ACGTGGAATTTATATAGGCCGCA 60.244 43.478 0.00 0.00 0.00 5.69
1895 1948 3.332034 ACGTGGAATTTATATAGGCCGC 58.668 45.455 0.00 0.00 0.00 6.53
1896 1949 4.817517 AGACGTGGAATTTATATAGGCCG 58.182 43.478 0.00 0.00 0.00 6.13
1897 1950 7.609056 TCTTAGACGTGGAATTTATATAGGCC 58.391 38.462 0.00 0.00 0.00 5.19
1898 1951 7.275999 GCTCTTAGACGTGGAATTTATATAGGC 59.724 40.741 0.00 0.00 0.00 3.93
1899 1952 8.524487 AGCTCTTAGACGTGGAATTTATATAGG 58.476 37.037 0.00 0.00 0.00 2.57
1906 1959 9.099454 CTTAATTAGCTCTTAGACGTGGAATTT 57.901 33.333 0.00 0.00 0.00 1.82
1907 1960 7.224949 GCTTAATTAGCTCTTAGACGTGGAATT 59.775 37.037 0.00 0.00 46.77 2.17
1908 1961 6.702282 GCTTAATTAGCTCTTAGACGTGGAAT 59.298 38.462 0.00 0.00 46.77 3.01
1909 1962 6.040878 GCTTAATTAGCTCTTAGACGTGGAA 58.959 40.000 0.00 0.00 46.77 3.53
1910 1963 5.589192 GCTTAATTAGCTCTTAGACGTGGA 58.411 41.667 0.00 0.00 46.77 4.02
1911 1964 5.891810 GCTTAATTAGCTCTTAGACGTGG 57.108 43.478 0.00 0.00 46.77 4.94
1924 1977 4.262079 CCCCTCACGTCTAGGCTTAATTAG 60.262 50.000 7.81 0.00 32.34 1.73
1925 1978 3.640029 CCCCTCACGTCTAGGCTTAATTA 59.360 47.826 7.81 0.00 32.34 1.40
1926 1979 2.434702 CCCCTCACGTCTAGGCTTAATT 59.565 50.000 7.81 0.00 32.34 1.40
1927 1980 2.040178 CCCCTCACGTCTAGGCTTAAT 58.960 52.381 7.81 0.00 32.34 1.40
1928 1981 1.481871 CCCCTCACGTCTAGGCTTAA 58.518 55.000 7.81 0.00 32.34 1.85
1929 1982 0.396695 CCCCCTCACGTCTAGGCTTA 60.397 60.000 7.81 0.00 32.34 3.09
1930 1983 1.686110 CCCCCTCACGTCTAGGCTT 60.686 63.158 7.81 0.00 32.34 4.35
1931 1984 2.042843 CCCCCTCACGTCTAGGCT 60.043 66.667 7.81 0.00 32.34 4.58
1946 1999 2.956333 GGCAATATACTTCAACACCCCC 59.044 50.000 0.00 0.00 0.00 5.40
1947 2000 2.956333 GGGCAATATACTTCAACACCCC 59.044 50.000 0.00 0.00 0.00 4.95
1948 2001 2.616842 CGGGCAATATACTTCAACACCC 59.383 50.000 0.00 0.00 0.00 4.61
1949 2002 2.032924 GCGGGCAATATACTTCAACACC 59.967 50.000 0.00 0.00 0.00 4.16
1950 2003 2.032924 GGCGGGCAATATACTTCAACAC 59.967 50.000 0.00 0.00 0.00 3.32
1951 2004 2.092646 AGGCGGGCAATATACTTCAACA 60.093 45.455 3.78 0.00 0.00 3.33
1952 2005 2.548480 GAGGCGGGCAATATACTTCAAC 59.452 50.000 3.78 0.00 0.00 3.18
1953 2006 2.438021 AGAGGCGGGCAATATACTTCAA 59.562 45.455 3.78 0.00 0.00 2.69
1954 2007 2.037251 GAGAGGCGGGCAATATACTTCA 59.963 50.000 3.78 0.00 0.00 3.02
1955 2008 2.300437 AGAGAGGCGGGCAATATACTTC 59.700 50.000 3.78 0.00 0.00 3.01
1956 2009 2.300437 GAGAGAGGCGGGCAATATACTT 59.700 50.000 3.78 0.00 0.00 2.24
1957 2010 1.896465 GAGAGAGGCGGGCAATATACT 59.104 52.381 3.78 0.00 0.00 2.12
1958 2011 1.066787 GGAGAGAGGCGGGCAATATAC 60.067 57.143 3.78 0.00 0.00 1.47
1959 2012 1.267121 GGAGAGAGGCGGGCAATATA 58.733 55.000 3.78 0.00 0.00 0.86
1960 2013 0.764369 TGGAGAGAGGCGGGCAATAT 60.764 55.000 3.78 0.00 0.00 1.28
1961 2014 0.764369 ATGGAGAGAGGCGGGCAATA 60.764 55.000 3.78 0.00 0.00 1.90
1962 2015 2.049627 GATGGAGAGAGGCGGGCAAT 62.050 60.000 3.78 0.00 0.00 3.56
1963 2016 2.688666 ATGGAGAGAGGCGGGCAA 60.689 61.111 3.78 0.00 0.00 4.52
1964 2017 3.157252 GATGGAGAGAGGCGGGCA 61.157 66.667 3.78 0.00 0.00 5.36
1965 2018 3.157252 TGATGGAGAGAGGCGGGC 61.157 66.667 0.00 0.00 0.00 6.13
1966 2019 1.333636 AACTGATGGAGAGAGGCGGG 61.334 60.000 0.00 0.00 0.00 6.13
1967 2020 0.103937 GAACTGATGGAGAGAGGCGG 59.896 60.000 0.00 0.00 0.00 6.13
1968 2021 0.248825 CGAACTGATGGAGAGAGGCG 60.249 60.000 0.00 0.00 0.00 5.52
1969 2022 0.103937 CCGAACTGATGGAGAGAGGC 59.896 60.000 0.00 0.00 0.00 4.70
1970 2023 1.407258 GTCCGAACTGATGGAGAGAGG 59.593 57.143 0.00 0.00 34.21 3.69
1971 2024 2.374184 AGTCCGAACTGATGGAGAGAG 58.626 52.381 0.00 0.00 34.21 3.20
1972 2025 2.516227 AGTCCGAACTGATGGAGAGA 57.484 50.000 0.00 0.00 34.21 3.10
1973 2026 3.601443 AAAGTCCGAACTGATGGAGAG 57.399 47.619 0.00 0.00 35.36 3.20
1974 2027 3.557054 CCAAAAGTCCGAACTGATGGAGA 60.557 47.826 0.36 0.00 41.39 3.71
1975 2028 2.744202 CCAAAAGTCCGAACTGATGGAG 59.256 50.000 0.36 0.00 41.39 3.86
1976 2029 2.370519 TCCAAAAGTCCGAACTGATGGA 59.629 45.455 4.92 4.92 43.51 3.41
1977 2030 2.778299 TCCAAAAGTCCGAACTGATGG 58.222 47.619 0.24 0.24 40.74 3.51
1978 2031 4.002982 TCATCCAAAAGTCCGAACTGATG 58.997 43.478 0.00 0.00 35.25 3.07
1979 2032 4.256920 CTCATCCAAAAGTCCGAACTGAT 58.743 43.478 0.00 0.00 35.36 2.90
1980 2033 3.071023 ACTCATCCAAAAGTCCGAACTGA 59.929 43.478 0.00 0.00 35.36 3.41
1981 2034 3.403038 ACTCATCCAAAAGTCCGAACTG 58.597 45.455 0.00 0.00 35.36 3.16
1982 2035 3.771577 ACTCATCCAAAAGTCCGAACT 57.228 42.857 0.00 0.00 37.32 3.01
1983 2036 3.058224 CCAACTCATCCAAAAGTCCGAAC 60.058 47.826 0.00 0.00 0.00 3.95
1984 2037 3.146066 CCAACTCATCCAAAAGTCCGAA 58.854 45.455 0.00 0.00 0.00 4.30
1985 2038 2.778299 CCAACTCATCCAAAAGTCCGA 58.222 47.619 0.00 0.00 0.00 4.55
1986 2039 1.200020 GCCAACTCATCCAAAAGTCCG 59.800 52.381 0.00 0.00 0.00 4.79
1987 2040 2.229784 CAGCCAACTCATCCAAAAGTCC 59.770 50.000 0.00 0.00 0.00 3.85
1988 2041 3.149196 TCAGCCAACTCATCCAAAAGTC 58.851 45.455 0.00 0.00 0.00 3.01
1989 2042 3.228188 TCAGCCAACTCATCCAAAAGT 57.772 42.857 0.00 0.00 0.00 2.66
1990 2043 3.571401 ACTTCAGCCAACTCATCCAAAAG 59.429 43.478 0.00 0.00 0.00 2.27
1991 2044 3.565307 ACTTCAGCCAACTCATCCAAAA 58.435 40.909 0.00 0.00 0.00 2.44
1992 2045 3.228188 ACTTCAGCCAACTCATCCAAA 57.772 42.857 0.00 0.00 0.00 3.28
1993 2046 2.957402 ACTTCAGCCAACTCATCCAA 57.043 45.000 0.00 0.00 0.00 3.53
1994 2047 3.370846 CCATACTTCAGCCAACTCATCCA 60.371 47.826 0.00 0.00 0.00 3.41
1995 2048 3.209410 CCATACTTCAGCCAACTCATCC 58.791 50.000 0.00 0.00 0.00 3.51
1996 2049 3.873952 GACCATACTTCAGCCAACTCATC 59.126 47.826 0.00 0.00 0.00 2.92
1997 2050 3.264193 TGACCATACTTCAGCCAACTCAT 59.736 43.478 0.00 0.00 0.00 2.90
1998 2051 2.637382 TGACCATACTTCAGCCAACTCA 59.363 45.455 0.00 0.00 0.00 3.41
1999 2052 3.334583 TGACCATACTTCAGCCAACTC 57.665 47.619 0.00 0.00 0.00 3.01
2000 2053 3.521126 AGATGACCATACTTCAGCCAACT 59.479 43.478 0.00 0.00 29.21 3.16
2001 2054 3.624861 CAGATGACCATACTTCAGCCAAC 59.375 47.826 0.00 0.00 29.21 3.77
2002 2055 3.370846 CCAGATGACCATACTTCAGCCAA 60.371 47.826 0.00 0.00 29.21 4.52
2003 2056 2.171237 CCAGATGACCATACTTCAGCCA 59.829 50.000 0.00 0.00 29.21 4.75
2004 2057 2.435805 TCCAGATGACCATACTTCAGCC 59.564 50.000 0.00 0.00 29.21 4.85
2005 2058 3.462021 GTCCAGATGACCATACTTCAGC 58.538 50.000 0.00 0.00 38.09 4.26
2315 2369 4.630505 GTCAAGAACTTATCCCTTTCGACC 59.369 45.833 0.00 0.00 0.00 4.79
2424 2481 7.945033 TTGCAATTTGTTCTCCAATTAACTC 57.055 32.000 0.00 0.00 31.81 3.01
2510 2567 5.606348 ATCTTCTCCAGTATTCAGGTGTC 57.394 43.478 0.00 0.00 0.00 3.67
2528 2585 5.266788 TCCAATCCTTGATGCAAGAATCTT 58.733 37.500 8.64 0.00 43.42 2.40
2633 2690 6.030849 CGGAAATATGCAACAATACCGAAAA 58.969 36.000 13.47 0.00 40.16 2.29
2668 2725 5.526846 TGCACCAATTGTTTCTTTCCAAATC 59.473 36.000 4.43 0.00 0.00 2.17
2674 2731 6.193761 CACATTTGCACCAATTGTTTCTTTC 58.806 36.000 4.43 0.00 36.31 2.62
2682 2739 3.437395 CCAATCCACATTTGCACCAATTG 59.563 43.478 0.00 0.00 32.93 2.32
2747 2813 1.536766 TGAGCCAAGAATTGTTCTGCG 59.463 47.619 0.00 0.00 46.99 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.