Multiple sequence alignment - TraesCS5B01G035300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G035300 chr5B 100.000 5258 0 0 1391 6648 38182493 38177236 0.000000e+00 9710.0
1 TraesCS5B01G035300 chr5B 100.000 1235 0 0 1 1235 38183883 38182649 0.000000e+00 2281.0
2 TraesCS5B01G035300 chr5D 92.195 4382 232 58 1399 5744 42905725 42910032 0.000000e+00 6096.0
3 TraesCS5B01G035300 chr5D 87.486 879 92 9 10 872 446262364 446261488 0.000000e+00 998.0
4 TraesCS5B01G035300 chr5D 92.140 687 40 11 5768 6450 42910021 42910697 0.000000e+00 957.0
5 TraesCS5B01G035300 chr5D 88.315 368 18 8 872 1216 42904883 42905248 1.030000e-112 418.0
6 TraesCS5B01G035300 chr5A 93.427 1932 105 12 2580 4496 32665796 32667720 0.000000e+00 2844.0
7 TraesCS5B01G035300 chr5A 89.754 1220 67 22 1391 2578 32664362 32665555 0.000000e+00 1507.0
8 TraesCS5B01G035300 chr5A 91.773 705 48 5 5050 5744 32668354 32669058 0.000000e+00 972.0
9 TraesCS5B01G035300 chr5A 91.601 631 43 7 5767 6393 32669046 32669670 0.000000e+00 863.0
10 TraesCS5B01G035300 chr5A 88.641 493 44 8 4532 5015 32667861 32668350 2.060000e-164 590.0
11 TraesCS5B01G035300 chr5A 85.979 378 29 13 880 1235 32663952 32664327 3.760000e-102 383.0
12 TraesCS5B01G035300 chr5A 87.138 311 33 5 566 872 705406481 705406788 4.930000e-91 346.0
13 TraesCS5B01G035300 chr5A 97.297 37 1 0 4494 4530 32667738 32667774 5.570000e-06 63.9
14 TraesCS5B01G035300 chr7D 89.077 888 70 13 1 872 271745114 271744238 0.000000e+00 1077.0
15 TraesCS5B01G035300 chr7D 89.171 748 63 9 1 734 136532952 136532209 0.000000e+00 917.0
16 TraesCS5B01G035300 chr2B 89.106 872 85 8 1 867 586901371 586900505 0.000000e+00 1075.0
17 TraesCS5B01G035300 chr2B 94.505 91 5 0 6444 6534 748284743 748284653 2.500000e-29 141.0
18 TraesCS5B01G035300 chr2B 89.720 107 9 1 6439 6543 799001959 799002065 1.160000e-27 135.0
19 TraesCS5B01G035300 chr1D 88.202 890 83 16 1 872 349711267 349712152 0.000000e+00 1042.0
20 TraesCS5B01G035300 chr2D 87.388 896 90 10 1 881 644102027 644101140 0.000000e+00 1007.0
21 TraesCS5B01G035300 chr7B 86.801 894 95 9 1 872 624002770 624001878 0.000000e+00 976.0
22 TraesCS5B01G035300 chr7B 89.189 111 8 4 6433 6539 190260216 190260326 1.160000e-27 135.0
23 TraesCS5B01G035300 chr4D 87.215 876 79 12 2 854 390280800 390279935 0.000000e+00 966.0
24 TraesCS5B01G035300 chr4D 87.019 416 36 8 474 874 119398631 119398219 2.830000e-123 453.0
25 TraesCS5B01G035300 chr4A 87.426 843 90 8 46 874 449801212 449800372 0.000000e+00 955.0
26 TraesCS5B01G035300 chr6B 87.483 727 81 9 155 875 713777019 713776297 0.000000e+00 830.0
27 TraesCS5B01G035300 chr6D 89.267 587 61 2 1 587 461380884 461380300 0.000000e+00 734.0
28 TraesCS5B01G035300 chr3D 89.021 419 40 5 456 872 531466116 531466530 1.280000e-141 514.0
29 TraesCS5B01G035300 chr3A 74.023 870 172 39 19 872 710570601 710569770 8.380000e-79 305.0
30 TraesCS5B01G035300 chr3B 90.566 106 7 3 6445 6549 415934789 415934892 3.230000e-28 137.0
31 TraesCS5B01G035300 chr1B 90.291 103 10 0 6432 6534 258729987 258729885 1.160000e-27 135.0
32 TraesCS5B01G035300 chr7A 89.623 106 9 2 6442 6547 171552030 171552133 4.180000e-27 134.0
33 TraesCS5B01G035300 chr7A 89.524 105 9 2 6445 6548 556574278 556574381 1.500000e-26 132.0
34 TraesCS5B01G035300 chr1A 91.753 97 7 1 6443 6539 118503597 118503692 4.180000e-27 134.0
35 TraesCS5B01G035300 chr1A 88.393 112 10 2 6425 6533 237509604 237509493 1.500000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G035300 chr5B 38177236 38183883 6647 True 5995.500000 9710 100.000000 1 6648 2 chr5B.!!$R1 6647
1 TraesCS5B01G035300 chr5D 42904883 42910697 5814 False 2490.333333 6096 90.883333 872 6450 3 chr5D.!!$F1 5578
2 TraesCS5B01G035300 chr5D 446261488 446262364 876 True 998.000000 998 87.486000 10 872 1 chr5D.!!$R1 862
3 TraesCS5B01G035300 chr5A 32663952 32669670 5718 False 1031.842857 2844 91.210286 880 6393 7 chr5A.!!$F2 5513
4 TraesCS5B01G035300 chr7D 271744238 271745114 876 True 1077.000000 1077 89.077000 1 872 1 chr7D.!!$R2 871
5 TraesCS5B01G035300 chr7D 136532209 136532952 743 True 917.000000 917 89.171000 1 734 1 chr7D.!!$R1 733
6 TraesCS5B01G035300 chr2B 586900505 586901371 866 True 1075.000000 1075 89.106000 1 867 1 chr2B.!!$R1 866
7 TraesCS5B01G035300 chr1D 349711267 349712152 885 False 1042.000000 1042 88.202000 1 872 1 chr1D.!!$F1 871
8 TraesCS5B01G035300 chr2D 644101140 644102027 887 True 1007.000000 1007 87.388000 1 881 1 chr2D.!!$R1 880
9 TraesCS5B01G035300 chr7B 624001878 624002770 892 True 976.000000 976 86.801000 1 872 1 chr7B.!!$R1 871
10 TraesCS5B01G035300 chr4D 390279935 390280800 865 True 966.000000 966 87.215000 2 854 1 chr4D.!!$R2 852
11 TraesCS5B01G035300 chr4A 449800372 449801212 840 True 955.000000 955 87.426000 46 874 1 chr4A.!!$R1 828
12 TraesCS5B01G035300 chr6B 713776297 713777019 722 True 830.000000 830 87.483000 155 875 1 chr6B.!!$R1 720
13 TraesCS5B01G035300 chr6D 461380300 461380884 584 True 734.000000 734 89.267000 1 587 1 chr6D.!!$R1 586
14 TraesCS5B01G035300 chr3A 710569770 710570601 831 True 305.000000 305 74.023000 19 872 1 chr3A.!!$R1 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 709 0.309612 AACGACTGCGCGGAAATTTT 59.690 45.0 25.98 0.00 42.48 1.82 F
1928 2328 0.107703 GACTTCGTCCATGGATGCCA 60.108 55.0 26.64 15.48 38.19 4.92 F
1929 2329 0.327924 ACTTCGTCCATGGATGCCAA 59.672 50.0 26.64 16.51 36.95 4.52 F
2299 2721 0.329261 TGGGGAGATGAGGCACTTTG 59.671 55.0 0.00 0.00 41.55 2.77 F
2300 2722 0.620556 GGGGAGATGAGGCACTTTGA 59.379 55.0 0.00 0.00 41.55 2.69 F
4071 4749 0.604578 CCATTTGTGCCCTCTGTTGG 59.395 55.0 0.00 0.00 0.00 3.77 F
5319 6117 1.660560 CCCCAAGAAGGCATTGCTCG 61.661 60.0 8.82 0.00 35.39 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2402 2824 0.105039 GCCTAGATCAACCAGGACGG 59.895 60.000 0.00 0.0 42.50 4.79 R
2828 3490 0.609957 TTGGCAGCTTGGTCATCCAG 60.610 55.000 0.00 0.0 45.22 3.86 R
3691 4362 1.232119 CAGATGCACTGTGACAGCAA 58.768 50.000 13.37 0.0 42.15 3.91 R
3956 4631 2.098607 AGCTCACAATTCATTCATGCCG 59.901 45.455 0.00 0.0 0.00 5.69 R
4129 4807 3.265489 ACCCCCTCCAGACTTTGAAATA 58.735 45.455 0.00 0.0 0.00 1.40 R
5379 6177 0.255890 TGCAGGAATGCCTACCTTCC 59.744 55.000 0.00 0.0 44.80 3.46 R
6517 7334 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.0 36.12 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 3.684305 CCGCTACATTGAGTGACATCAAA 59.316 43.478 0.00 0.00 42.21 2.69
142 146 3.625649 ACAACCACAATGGCAAAAAGT 57.374 38.095 0.00 0.00 42.67 2.66
152 158 3.441496 TGGCAAAAAGTGAAGCAAGAG 57.559 42.857 0.00 0.00 0.00 2.85
235 242 2.379634 CGCAGTTGAACGGCATCGA 61.380 57.895 19.58 0.00 39.28 3.59
237 244 1.565156 GCAGTTGAACGGCATCGACA 61.565 55.000 15.33 0.00 39.14 4.35
281 288 4.309950 GTGGACGAAGGCACCGGT 62.310 66.667 0.00 0.00 0.00 5.28
314 325 1.374758 CTTCTTCCGCTTCACGCCT 60.375 57.895 0.00 0.00 41.76 5.52
334 345 4.145052 CCTAAAACCTTGCTCACCTTCTT 58.855 43.478 0.00 0.00 0.00 2.52
653 709 0.309612 AACGACTGCGCGGAAATTTT 59.690 45.000 25.98 0.00 42.48 1.82
675 731 3.803082 GCGCCAAATCTCGCTGCA 61.803 61.111 0.00 0.00 46.92 4.41
688 746 1.739049 GCTGCAGATAGAGGCGAGT 59.261 57.895 20.43 0.00 0.00 4.18
696 754 0.395311 ATAGAGGCGAGTTCGGGTCA 60.395 55.000 3.50 0.00 40.23 4.02
854 915 3.672447 TCGCAGCGTTACACGGGA 61.672 61.111 15.93 0.00 42.82 5.14
889 950 6.554334 TGCTCTTAAACCATCACTTTACAC 57.446 37.500 0.00 0.00 0.00 2.90
916 980 5.969435 GCTTTTGTGTAAAACCACTCACTAC 59.031 40.000 0.00 0.00 36.30 2.73
943 1008 2.708059 GCAACTCGTCGCACTCGTC 61.708 63.158 0.00 0.00 36.96 4.20
953 1018 2.434359 CACTCGTCCCCTTTCGCC 60.434 66.667 0.00 0.00 0.00 5.54
954 1019 2.603776 ACTCGTCCCCTTTCGCCT 60.604 61.111 0.00 0.00 0.00 5.52
1059 1146 1.983224 CGATGATAATCCCCCGCCT 59.017 57.895 0.00 0.00 0.00 5.52
1226 1319 1.411612 CCCCAACTACAGGTATCGTCC 59.588 57.143 0.00 0.00 0.00 4.79
1443 1831 0.251787 GGGGATGCCAGTGGTTTCTT 60.252 55.000 11.74 0.00 0.00 2.52
1463 1852 2.573869 CGATGGCGCGGATCCTAT 59.426 61.111 8.83 0.00 0.00 2.57
1572 1961 2.363680 CTGGATCTGGAACGTCTGCTAT 59.636 50.000 0.00 0.00 0.00 2.97
1642 2037 1.134995 CCTCTGCTCTGCGTGATGTTA 60.135 52.381 0.00 0.00 0.00 2.41
1706 2101 5.324409 AGTGTCAATTTTGAGGCATAGGAA 58.676 37.500 0.00 0.00 37.98 3.36
1789 2187 7.069950 ACTCTATACATGGTAATGCTCTGAACA 59.930 37.037 0.00 0.00 37.29 3.18
1807 2205 6.376864 TCTGAACAGTTTTCAGTTTGAATGGA 59.623 34.615 16.61 0.00 44.58 3.41
1834 2232 2.162408 GACTGAAGTATTGCCCTGTTGC 59.838 50.000 0.00 0.00 0.00 4.17
1839 2237 0.676782 GTATTGCCCTGTTGCGGTCT 60.677 55.000 0.00 0.00 0.00 3.85
1895 2293 7.645058 ATGTTAGGATTTATGAACAAGTGGG 57.355 36.000 0.00 0.00 35.56 4.61
1914 2314 4.275196 GTGGGTTCACAGGTTTAAGACTTC 59.725 45.833 0.00 0.00 43.13 3.01
1916 2316 4.124970 GGTTCACAGGTTTAAGACTTCGT 58.875 43.478 0.00 0.00 0.00 3.85
1917 2317 4.210746 GGTTCACAGGTTTAAGACTTCGTC 59.789 45.833 0.00 0.00 0.00 4.20
1918 2318 3.986277 TCACAGGTTTAAGACTTCGTCC 58.014 45.455 0.00 0.00 32.18 4.79
1919 2319 3.385433 TCACAGGTTTAAGACTTCGTCCA 59.615 43.478 0.00 0.00 32.18 4.02
1920 2320 4.039973 TCACAGGTTTAAGACTTCGTCCAT 59.960 41.667 0.00 0.00 32.18 3.41
1921 2321 4.152402 CACAGGTTTAAGACTTCGTCCATG 59.848 45.833 0.00 0.00 32.18 3.66
1922 2322 3.684788 CAGGTTTAAGACTTCGTCCATGG 59.315 47.826 4.97 4.97 32.18 3.66
1924 2324 4.225267 AGGTTTAAGACTTCGTCCATGGAT 59.775 41.667 19.62 0.00 32.18 3.41
1925 2325 4.332819 GGTTTAAGACTTCGTCCATGGATG 59.667 45.833 25.71 25.71 32.18 3.51
1926 2326 2.029838 AAGACTTCGTCCATGGATGC 57.970 50.000 26.64 14.00 32.18 3.91
1927 2327 0.179000 AGACTTCGTCCATGGATGCC 59.821 55.000 26.64 15.60 32.18 4.40
1928 2328 0.107703 GACTTCGTCCATGGATGCCA 60.108 55.000 26.64 15.48 38.19 4.92
1929 2329 0.327924 ACTTCGTCCATGGATGCCAA 59.672 50.000 26.64 16.51 36.95 4.52
1930 2330 0.734889 CTTCGTCCATGGATGCCAAC 59.265 55.000 26.64 8.89 36.95 3.77
1945 2345 6.770785 TGGATGCCAACATAGTTATTTACCTC 59.229 38.462 0.00 0.00 36.35 3.85
1976 2376 7.929245 TGTGTGTTTCATTCAAAGCTAGTAGTA 59.071 33.333 0.00 0.00 0.00 1.82
1993 2393 9.681692 GCTAGTAGTAAGTATAGCCTTTTCTTC 57.318 37.037 0.00 0.00 35.65 2.87
2045 2452 6.312426 GCATGGTACTAGATCAATGCTGTATC 59.688 42.308 17.45 0.00 0.00 2.24
2065 2472 9.429359 CTGTATCTAATGCTGGGAAATTAGTAG 57.571 37.037 0.00 0.00 37.54 2.57
2155 2576 3.885297 ACACAAGTTCTACATGCTGCTTT 59.115 39.130 0.00 0.00 0.00 3.51
2167 2588 2.506444 TGCTGCTTTGTGATGTCATGA 58.494 42.857 0.00 0.00 0.00 3.07
2179 2600 6.108687 TGTGATGTCATGAAAGTAGGATCAC 58.891 40.000 0.00 2.43 39.15 3.06
2181 2602 6.820656 GTGATGTCATGAAAGTAGGATCACTT 59.179 38.462 0.00 0.00 40.49 3.16
2182 2603 6.820152 TGATGTCATGAAAGTAGGATCACTTG 59.180 38.462 0.00 0.00 38.74 3.16
2183 2604 6.358974 TGTCATGAAAGTAGGATCACTTGA 57.641 37.500 0.00 0.00 38.74 3.02
2185 2606 7.397221 TGTCATGAAAGTAGGATCACTTGATT 58.603 34.615 0.00 0.00 38.74 2.57
2186 2607 8.539544 TGTCATGAAAGTAGGATCACTTGATTA 58.460 33.333 0.00 0.00 38.74 1.75
2202 2623 4.846779 TGATTAGTCTGTTTGGTTTGGC 57.153 40.909 0.00 0.00 0.00 4.52
2214 2635 4.695217 TTGGTTTGGCGATATCTTGAAC 57.305 40.909 0.34 1.20 0.00 3.18
2273 2694 8.637986 TCTCATGCAACAACCTTTAGTTTAAAT 58.362 29.630 0.00 0.00 36.18 1.40
2295 2717 1.546029 GTTTTTGGGGAGATGAGGCAC 59.454 52.381 0.00 0.00 0.00 5.01
2297 2719 1.075601 TTTGGGGAGATGAGGCACTT 58.924 50.000 0.00 0.00 41.55 3.16
2298 2720 1.075601 TTGGGGAGATGAGGCACTTT 58.924 50.000 0.00 0.00 41.55 2.66
2299 2721 0.329261 TGGGGAGATGAGGCACTTTG 59.671 55.000 0.00 0.00 41.55 2.77
2300 2722 0.620556 GGGGAGATGAGGCACTTTGA 59.379 55.000 0.00 0.00 41.55 2.69
2301 2723 1.407989 GGGGAGATGAGGCACTTTGAG 60.408 57.143 0.00 0.00 41.55 3.02
2302 2724 1.280421 GGGAGATGAGGCACTTTGAGT 59.720 52.381 0.00 0.00 41.55 3.41
2313 2735 3.691609 GGCACTTTGAGTCTTTGATAGGG 59.308 47.826 0.00 0.00 0.00 3.53
2351 2773 3.795623 ACAATCATGCTCAATTGCTCC 57.204 42.857 0.00 0.00 36.54 4.70
2360 2782 4.070009 TGCTCAATTGCTCCTATATGCAG 58.930 43.478 0.00 0.00 40.46 4.41
2368 2790 3.817084 TGCTCCTATATGCAGTTTGATGC 59.183 43.478 0.00 0.00 46.68 3.91
2399 2821 7.340122 TCAATACCTTCTCTGTGACTAGATG 57.660 40.000 0.00 0.00 0.00 2.90
2402 2824 7.811117 ATACCTTCTCTGTGACTAGATGTAC 57.189 40.000 0.00 0.00 0.00 2.90
2426 2848 1.139853 CCTGGTTGATCTAGGCAGGAC 59.860 57.143 0.00 0.00 37.96 3.85
2467 2890 5.680619 TGTATATTTGGAGCCAAGTCGATT 58.319 37.500 0.17 0.00 37.24 3.34
2472 2895 2.426522 TGGAGCCAAGTCGATTTCAAG 58.573 47.619 0.00 0.00 0.00 3.02
2540 2963 2.057137 TGCTTGGCACACTTCTTTCT 57.943 45.000 0.00 0.00 39.29 2.52
2550 2973 7.725251 TGGCACACTTCTTTCTCAAATATTTT 58.275 30.769 0.00 0.00 0.00 1.82
2568 2991 9.783256 AAATATTTTCAAGTATTAACGCACTCC 57.217 29.630 0.00 0.00 0.00 3.85
2578 3001 6.979238 AGTATTAACGCACTCCTGATAGTTTC 59.021 38.462 0.00 0.00 0.00 2.78
2618 3280 8.887717 GCTTATATATGCATTTTCTGGGACTAG 58.112 37.037 3.54 0.00 0.00 2.57
2692 3354 2.361757 CCAAGATGAAGGTGCACACAAA 59.638 45.455 20.43 1.20 0.00 2.83
2767 3429 1.872952 GTTTGCCACAAAATCCCTTGC 59.127 47.619 0.00 0.00 0.00 4.01
2828 3490 9.998106 TCCTTTAGCTTATCTGATATGGTTTAC 57.002 33.333 16.98 0.67 0.00 2.01
2840 3502 6.356556 TGATATGGTTTACTGGATGACCAAG 58.643 40.000 0.00 0.00 46.32 3.61
2858 3524 3.538591 CAAGCTGCCAACAGATATCTGA 58.461 45.455 34.16 14.12 43.13 3.27
2869 3535 9.109393 GCCAACAGATATCTGAAATAGTAAACA 57.891 33.333 34.16 0.00 46.59 2.83
2906 3572 4.626604 GGTTGTGTATGCATTGACATTTGG 59.373 41.667 3.54 0.00 0.00 3.28
3086 3752 5.337652 GGACAGGTACTTAGTTCTTGCTGAT 60.338 44.000 1.39 0.00 34.60 2.90
3172 3838 7.119846 ACTCTTTTAGTTCTGACATGCCATAAC 59.880 37.037 2.59 2.59 33.35 1.89
3174 3840 7.446931 TCTTTTAGTTCTGACATGCCATAACAA 59.553 33.333 11.77 3.24 0.00 2.83
3244 3910 9.474313 ACTCTTTATGCCATTTACCTTGATTTA 57.526 29.630 0.00 0.00 0.00 1.40
3295 3961 8.950210 AGAATTTGTACTATCAAACTCACATGG 58.050 33.333 0.00 0.00 39.58 3.66
3385 4051 2.032681 AGGCGGGTTGCTCAACTC 59.967 61.111 11.91 7.55 45.43 3.01
3482 4148 8.020819 CGGTAAGAAGTGCATTTTTCTATCAAA 58.979 33.333 10.32 0.00 33.49 2.69
3500 4166 9.598517 TCTATCAAATTTGTGTTTTCTTGCTTT 57.401 25.926 17.47 0.00 0.00 3.51
3505 4171 4.527509 TTGTGTTTTCTTGCTTTGTCCA 57.472 36.364 0.00 0.00 0.00 4.02
3562 4230 3.526534 GAGAGGACTACATTTGTCTGGC 58.473 50.000 0.00 0.00 35.04 4.85
3658 4329 4.077626 TGGTATACCTTCCCCTCCTAATGT 60.078 45.833 22.41 0.00 36.82 2.71
3664 4335 4.037927 CCTTCCCCTCCTAATGTTACTCA 58.962 47.826 0.00 0.00 0.00 3.41
3673 4344 5.001232 TCCTAATGTTACTCAACCAACTGC 58.999 41.667 0.00 0.00 33.41 4.40
3686 4357 8.584157 ACTCAACCAACTGCATTTTATAATCAA 58.416 29.630 0.00 0.00 0.00 2.57
3687 4358 9.590451 CTCAACCAACTGCATTTTATAATCAAT 57.410 29.630 0.00 0.00 0.00 2.57
3708 4379 2.780065 TTTTGCTGTCACAGTGCATC 57.220 45.000 6.68 0.00 36.55 3.91
3719 4390 2.544480 CAGTGCATCTGCTGATTGTG 57.456 50.000 2.92 0.00 42.66 3.33
3732 4403 3.808726 GCTGATTGTGTGCATTTTGGAAA 59.191 39.130 0.00 0.00 0.00 3.13
3733 4404 4.453136 GCTGATTGTGTGCATTTTGGAAAT 59.547 37.500 0.00 0.00 0.00 2.17
3734 4405 5.390145 GCTGATTGTGTGCATTTTGGAAATC 60.390 40.000 0.00 0.00 0.00 2.17
3747 4421 8.650714 GCATTTTGGAAATCTTTATCTCAACAC 58.349 33.333 0.00 0.00 0.00 3.32
3748 4422 9.695526 CATTTTGGAAATCTTTATCTCAACACA 57.304 29.630 0.00 0.00 0.00 3.72
3773 4447 9.060347 CAAGACCATATTGCACTATTCACTTAT 57.940 33.333 0.00 0.00 0.00 1.73
3775 4449 9.632638 AGACCATATTGCACTATTCACTTATTT 57.367 29.630 0.00 0.00 0.00 1.40
3829 4503 4.083802 CCAACCTTTTTCGAGTGATCAGTC 60.084 45.833 18.99 18.99 0.00 3.51
3849 4524 4.130118 GTCATTCTCTCTGTGTGGTGTTT 58.870 43.478 0.00 0.00 0.00 2.83
3932 4607 7.014326 CCTGTATACTTAAGCATGGAGTCTGTA 59.986 40.741 1.29 0.00 0.00 2.74
4019 4697 3.565764 TCCTCTGTTAGGGATGCATTG 57.434 47.619 0.00 0.00 46.55 2.82
4032 4710 4.093850 GGGATGCATTGTTTTCTTTGATGC 59.906 41.667 0.00 0.00 42.48 3.91
4043 4721 9.545105 TTGTTTTCTTTGATGCAATCTGTAATT 57.455 25.926 0.00 0.00 45.81 1.40
4046 4724 9.761504 TTTTCTTTGATGCAATCTGTAATTTGA 57.238 25.926 0.00 0.00 45.81 2.69
4067 4745 2.431954 AGATCCATTTGTGCCCTCTG 57.568 50.000 0.00 0.00 0.00 3.35
4071 4749 0.604578 CCATTTGTGCCCTCTGTTGG 59.395 55.000 0.00 0.00 0.00 3.77
4082 4760 2.100749 CCCTCTGTTGGTTGTTTTCACC 59.899 50.000 0.00 0.00 0.00 4.02
4129 4807 2.519377 TGTACACACGCTTTACAGCT 57.481 45.000 0.00 0.00 44.85 4.24
4197 4875 5.128991 ACTGCCTATACAGGGTTAGTTTCTC 59.871 44.000 0.00 0.00 42.88 2.87
4198 4876 5.027460 TGCCTATACAGGGTTAGTTTCTCA 58.973 41.667 0.00 0.00 42.88 3.27
4221 4899 9.254133 CTCAAGTTCCTCAGTTATATACACATG 57.746 37.037 0.00 0.00 0.00 3.21
4223 4901 6.525629 AGTTCCTCAGTTATATACACATGCC 58.474 40.000 0.00 0.00 0.00 4.40
4357 5038 7.897575 TTGCTTGTTACACATTTGACTTTTT 57.102 28.000 0.00 0.00 0.00 1.94
4450 5131 2.026915 TCAATGCTGCTCATGTACCACT 60.027 45.455 0.00 0.00 35.13 4.00
4646 5435 5.359194 TGGGTGAGACCTATTTCTTCATC 57.641 43.478 0.00 0.00 38.64 2.92
4654 5443 4.694339 ACCTATTTCTTCATCGGCTACAC 58.306 43.478 0.00 0.00 0.00 2.90
4678 5467 5.266733 ACTGTGTTTCAGATGTTGCAAAT 57.733 34.783 0.00 0.00 46.27 2.32
4849 5641 7.948357 AGCATGTATTCATAAGATGCAAATGT 58.052 30.769 0.00 0.00 32.47 2.71
4940 5734 8.181487 TGTGATTCGTAATCTTTAGTTACTGC 57.819 34.615 0.00 0.00 38.72 4.40
4941 5735 7.277098 TGTGATTCGTAATCTTTAGTTACTGCC 59.723 37.037 0.00 0.00 38.72 4.85
4961 5755 2.005451 CGGAAGCAATCCTTGTCTCAG 58.995 52.381 6.95 0.00 46.98 3.35
4966 5760 3.871485 AGCAATCCTTGTCTCAGTGATC 58.129 45.455 0.00 0.00 0.00 2.92
5030 5826 6.366315 TGTAATATGGTAAAACATCGTGCC 57.634 37.500 0.00 0.00 32.39 5.01
5038 5834 4.208253 GGTAAAACATCGTGCCTTTGTTTG 59.792 41.667 1.47 0.00 41.39 2.93
5140 5938 4.407365 TCTCTATGTGTGAACAGACTGGA 58.593 43.478 7.51 0.00 0.00 3.86
5214 6012 4.456535 TCAAGGAATTTGAACGTTCTCCA 58.543 39.130 26.85 14.47 42.69 3.86
5319 6117 1.660560 CCCCAAGAAGGCATTGCTCG 61.661 60.000 8.82 0.00 35.39 5.03
5379 6177 2.679837 CAGACATTGGAAGAATGGTCCG 59.320 50.000 0.00 0.00 38.06 4.79
5443 6249 6.480763 TCCACAAGCTCATACCTCAAATAAA 58.519 36.000 0.00 0.00 0.00 1.40
5444 6250 6.945435 TCCACAAGCTCATACCTCAAATAAAA 59.055 34.615 0.00 0.00 0.00 1.52
5476 6282 0.383002 CGCACAACTGTACTTGCACG 60.383 55.000 8.38 0.00 34.49 5.34
5582 6390 3.299503 TGCATGCTCATGGACTACTCTA 58.700 45.455 20.33 0.00 39.16 2.43
5583 6391 3.706086 TGCATGCTCATGGACTACTCTAA 59.294 43.478 20.33 0.00 39.16 2.10
5661 6469 8.879759 CATTGATCTGTAAACGTGTTAAGGTAT 58.120 33.333 0.00 0.00 0.00 2.73
5695 6507 7.303634 TGTTTACTCAACACTTTCTTGAGAC 57.696 36.000 13.71 4.08 45.15 3.36
5696 6508 6.876789 TGTTTACTCAACACTTTCTTGAGACA 59.123 34.615 13.71 6.23 45.15 3.41
5768 6580 8.961294 TTTTTCTTTTTGACATCAATGGTGAT 57.039 26.923 0.00 0.00 45.80 3.06
5769 6581 8.592105 TTTTCTTTTTGACATCAATGGTGATC 57.408 30.769 0.00 0.00 42.88 2.92
5770 6582 6.897706 TCTTTTTGACATCAATGGTGATCA 57.102 33.333 0.00 0.00 42.88 2.92
5771 6583 7.287512 TCTTTTTGACATCAATGGTGATCAA 57.712 32.000 0.00 4.10 42.88 2.57
5772 6584 7.372714 TCTTTTTGACATCAATGGTGATCAAG 58.627 34.615 0.00 0.00 42.88 3.02
5773 6585 4.707030 TTGACATCAATGGTGATCAAGC 57.293 40.909 0.00 0.00 42.88 4.01
5774 6586 3.688235 TGACATCAATGGTGATCAAGCA 58.312 40.909 0.00 0.00 42.88 3.91
5776 6588 5.438833 TGACATCAATGGTGATCAAGCATA 58.561 37.500 0.00 0.00 46.29 3.14
5777 6589 6.066032 TGACATCAATGGTGATCAAGCATAT 58.934 36.000 0.00 0.00 46.29 1.78
5798 6610 2.166829 TGCTTGTTCATTATTGCCCGT 58.833 42.857 0.00 0.00 0.00 5.28
5800 6612 3.759086 TGCTTGTTCATTATTGCCCGTTA 59.241 39.130 0.00 0.00 0.00 3.18
5802 6614 4.351192 CTTGTTCATTATTGCCCGTTAGC 58.649 43.478 0.00 0.00 0.00 3.09
5837 6649 3.981071 TTCTGCTTACTGTACCTGCAT 57.019 42.857 8.92 0.00 33.02 3.96
5851 6663 4.202245 ACCTGCATAATCGTGTTACTGT 57.798 40.909 0.00 0.00 0.00 3.55
5887 6699 5.512942 TCACCCTCATGATTTTCCTTGTA 57.487 39.130 0.00 0.00 0.00 2.41
5906 6719 8.748412 TCCTTGTAATTTTAATTCAGGACCATG 58.252 33.333 0.00 0.00 0.00 3.66
5962 6775 1.037579 GCTGTTACAATCCAGCCCCC 61.038 60.000 0.24 0.00 46.55 5.40
5988 6801 6.131972 TGAGAAGAAAATGGAGGAGACATT 57.868 37.500 0.00 0.00 40.07 2.71
5989 6802 5.942236 TGAGAAGAAAATGGAGGAGACATTG 59.058 40.000 0.00 0.00 38.47 2.82
6034 6847 7.835822 TGATTGAATCATTTACAAACCCGATT 58.164 30.769 3.29 0.00 33.59 3.34
6035 6848 7.973388 TGATTGAATCATTTACAAACCCGATTC 59.027 33.333 3.29 0.00 39.31 2.52
6036 6849 6.825944 TGAATCATTTACAAACCCGATTCA 57.174 33.333 15.27 15.27 43.76 2.57
6082 6895 1.623311 TCCCTCGCAGATTCTGTTTCA 59.377 47.619 14.90 0.00 33.89 2.69
6083 6896 2.237143 TCCCTCGCAGATTCTGTTTCAT 59.763 45.455 14.90 0.00 33.89 2.57
6143 6956 0.396695 TAGAGGCTTCCTACACCGGG 60.397 60.000 6.32 0.00 31.76 5.73
6177 6990 1.952296 AGACGGTACAACGAACACTCT 59.048 47.619 0.00 0.00 37.61 3.24
6178 6991 2.049228 GACGGTACAACGAACACTCTG 58.951 52.381 0.00 0.00 37.61 3.35
6179 6992 1.677576 ACGGTACAACGAACACTCTGA 59.322 47.619 0.00 0.00 37.61 3.27
6204 7018 6.263168 ACCATCAAAGTTTAGAACACAGGAAG 59.737 38.462 0.00 0.00 0.00 3.46
6352 7169 8.528643 TCAATTAATCTAAGGAAGAAGACGACA 58.471 33.333 0.00 0.00 37.89 4.35
6380 7197 5.295950 TGGGTTTTGATGCAGTATGTTTTG 58.704 37.500 0.00 0.00 39.31 2.44
6433 7250 9.480053 TTTTCATTGTACTTACTACTGTACCAC 57.520 33.333 0.00 0.00 38.48 4.16
6450 7267 9.276590 ACTGTACCACTTTACTTGTTAATTACC 57.723 33.333 0.00 0.00 0.00 2.85
6451 7268 8.620116 TGTACCACTTTACTTGTTAATTACCC 57.380 34.615 0.00 0.00 0.00 3.69
6452 7269 7.665145 TGTACCACTTTACTTGTTAATTACCCC 59.335 37.037 0.00 0.00 0.00 4.95
6453 7270 6.012113 ACCACTTTACTTGTTAATTACCCCC 58.988 40.000 0.00 0.00 0.00 5.40
6454 7271 6.183361 ACCACTTTACTTGTTAATTACCCCCT 60.183 38.462 0.00 0.00 0.00 4.79
6455 7272 6.376299 CCACTTTACTTGTTAATTACCCCCTC 59.624 42.308 0.00 0.00 0.00 4.30
6456 7273 6.376299 CACTTTACTTGTTAATTACCCCCTCC 59.624 42.308 0.00 0.00 0.00 4.30
6457 7274 3.639672 ACTTGTTAATTACCCCCTCCG 57.360 47.619 0.00 0.00 0.00 4.63
6458 7275 2.914941 ACTTGTTAATTACCCCCTCCGT 59.085 45.455 0.00 0.00 0.00 4.69
6459 7276 3.331591 ACTTGTTAATTACCCCCTCCGTT 59.668 43.478 0.00 0.00 0.00 4.44
6460 7277 3.632643 TGTTAATTACCCCCTCCGTTC 57.367 47.619 0.00 0.00 0.00 3.95
6461 7278 2.239402 TGTTAATTACCCCCTCCGTTCC 59.761 50.000 0.00 0.00 0.00 3.62
6462 7279 2.239402 GTTAATTACCCCCTCCGTTCCA 59.761 50.000 0.00 0.00 0.00 3.53
6463 7280 1.374572 AATTACCCCCTCCGTTCCAA 58.625 50.000 0.00 0.00 0.00 3.53
6464 7281 1.374572 ATTACCCCCTCCGTTCCAAA 58.625 50.000 0.00 0.00 0.00 3.28
6465 7282 1.147333 TTACCCCCTCCGTTCCAAAA 58.853 50.000 0.00 0.00 0.00 2.44
6466 7283 1.374572 TACCCCCTCCGTTCCAAAAT 58.625 50.000 0.00 0.00 0.00 1.82
6467 7284 1.374572 ACCCCCTCCGTTCCAAAATA 58.625 50.000 0.00 0.00 0.00 1.40
6468 7285 1.283905 ACCCCCTCCGTTCCAAAATAG 59.716 52.381 0.00 0.00 0.00 1.73
6469 7286 1.562475 CCCCCTCCGTTCCAAAATAGA 59.438 52.381 0.00 0.00 0.00 1.98
6470 7287 2.174854 CCCCCTCCGTTCCAAAATAGAT 59.825 50.000 0.00 0.00 0.00 1.98
6471 7288 3.372675 CCCCCTCCGTTCCAAAATAGATT 60.373 47.826 0.00 0.00 0.00 2.40
6472 7289 4.141344 CCCCCTCCGTTCCAAAATAGATTA 60.141 45.833 0.00 0.00 0.00 1.75
6473 7290 4.820173 CCCCTCCGTTCCAAAATAGATTAC 59.180 45.833 0.00 0.00 0.00 1.89
6474 7291 5.397559 CCCCTCCGTTCCAAAATAGATTACT 60.398 44.000 0.00 0.00 0.00 2.24
6475 7292 5.758784 CCCTCCGTTCCAAAATAGATTACTC 59.241 44.000 0.00 0.00 0.00 2.59
6476 7293 6.346096 CCTCCGTTCCAAAATAGATTACTCA 58.654 40.000 0.00 0.00 0.00 3.41
6477 7294 6.821665 CCTCCGTTCCAAAATAGATTACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
6478 7295 7.201617 CCTCCGTTCCAAAATAGATTACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
6479 7296 7.391620 TCCGTTCCAAAATAGATTACTCAACT 58.608 34.615 0.00 0.00 0.00 3.16
6480 7297 7.881232 TCCGTTCCAAAATAGATTACTCAACTT 59.119 33.333 0.00 0.00 0.00 2.66
6481 7298 8.512138 CCGTTCCAAAATAGATTACTCAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
6512 7329 6.029346 CTTTAATGCAAAGTTGGGTCATCT 57.971 37.500 0.00 0.00 39.10 2.90
6513 7330 7.156876 CTTTAATGCAAAGTTGGGTCATCTA 57.843 36.000 0.00 0.00 39.10 1.98
6514 7331 7.716799 TTTAATGCAAAGTTGGGTCATCTAT 57.283 32.000 0.00 0.00 0.00 1.98
6515 7332 7.716799 TTAATGCAAAGTTGGGTCATCTATT 57.283 32.000 0.00 0.00 0.00 1.73
6516 7333 6.610075 AATGCAAAGTTGGGTCATCTATTT 57.390 33.333 0.00 0.00 0.00 1.40
6517 7334 6.610075 ATGCAAAGTTGGGTCATCTATTTT 57.390 33.333 0.00 0.00 0.00 1.82
6518 7335 5.782047 TGCAAAGTTGGGTCATCTATTTTG 58.218 37.500 0.00 0.00 0.00 2.44
6519 7336 5.170748 GCAAAGTTGGGTCATCTATTTTGG 58.829 41.667 0.00 0.00 0.00 3.28
6520 7337 5.047377 GCAAAGTTGGGTCATCTATTTTGGA 60.047 40.000 0.00 0.00 0.00 3.53
6521 7338 6.518200 GCAAAGTTGGGTCATCTATTTTGGAA 60.518 38.462 0.00 0.00 0.00 3.53
6522 7339 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
6523 7340 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
6524 7341 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
6525 7342 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
6526 7343 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
6527 7344 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
6528 7345 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6529 7346 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6530 7347 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6531 7348 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
6532 7349 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
6533 7350 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
6534 7351 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
6535 7352 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
6536 7353 0.327924 TGGAACGGAGGGAGTACGTA 59.672 55.000 0.00 0.00 40.31 3.57
6537 7354 1.064463 TGGAACGGAGGGAGTACGTAT 60.064 52.381 0.00 0.00 40.31 3.06
6538 7355 1.606189 GGAACGGAGGGAGTACGTATC 59.394 57.143 0.00 0.00 40.31 2.24
6539 7356 2.292267 GAACGGAGGGAGTACGTATCA 58.708 52.381 0.00 0.00 40.31 2.15
6540 7357 1.964552 ACGGAGGGAGTACGTATCAG 58.035 55.000 0.00 0.00 39.30 2.90
6541 7358 1.487976 ACGGAGGGAGTACGTATCAGA 59.512 52.381 0.00 0.00 39.30 3.27
6542 7359 2.106166 ACGGAGGGAGTACGTATCAGAT 59.894 50.000 0.00 0.00 39.30 2.90
6543 7360 3.326006 ACGGAGGGAGTACGTATCAGATA 59.674 47.826 0.00 0.00 39.30 1.98
6544 7361 4.019501 ACGGAGGGAGTACGTATCAGATAT 60.020 45.833 0.00 0.00 39.30 1.63
6545 7362 5.188555 ACGGAGGGAGTACGTATCAGATATA 59.811 44.000 0.00 0.00 39.30 0.86
6546 7363 6.111382 CGGAGGGAGTACGTATCAGATATAA 58.889 44.000 0.00 0.00 0.00 0.98
6547 7364 6.258287 CGGAGGGAGTACGTATCAGATATAAG 59.742 46.154 0.00 0.00 0.00 1.73
6548 7365 7.337167 GGAGGGAGTACGTATCAGATATAAGA 58.663 42.308 0.00 0.00 0.00 2.10
6549 7366 7.994334 GGAGGGAGTACGTATCAGATATAAGAT 59.006 40.741 0.00 0.00 0.00 2.40
6550 7367 8.740123 AGGGAGTACGTATCAGATATAAGATG 57.260 38.462 0.00 0.00 0.00 2.90
6551 7368 8.549731 AGGGAGTACGTATCAGATATAAGATGA 58.450 37.037 0.00 0.00 0.00 2.92
6552 7369 8.614346 GGGAGTACGTATCAGATATAAGATGAC 58.386 40.741 0.00 0.00 0.00 3.06
6553 7370 9.386010 GGAGTACGTATCAGATATAAGATGACT 57.614 37.037 0.00 0.00 0.00 3.41
6570 7387 7.736447 AGATGACTTTTAGGTGTCTTTTCTG 57.264 36.000 0.00 0.00 34.57 3.02
6571 7388 7.509546 AGATGACTTTTAGGTGTCTTTTCTGA 58.490 34.615 0.00 0.00 34.57 3.27
6572 7389 7.659390 AGATGACTTTTAGGTGTCTTTTCTGAG 59.341 37.037 0.00 0.00 34.57 3.35
6573 7390 6.884832 TGACTTTTAGGTGTCTTTTCTGAGA 58.115 36.000 0.00 0.00 34.57 3.27
6574 7391 7.335627 TGACTTTTAGGTGTCTTTTCTGAGAA 58.664 34.615 0.00 0.00 34.57 2.87
6575 7392 7.827236 TGACTTTTAGGTGTCTTTTCTGAGAAA 59.173 33.333 3.02 3.02 34.57 2.52
6576 7393 8.214721 ACTTTTAGGTGTCTTTTCTGAGAAAG 57.785 34.615 7.76 3.33 37.85 2.62
6577 7394 8.047310 ACTTTTAGGTGTCTTTTCTGAGAAAGA 58.953 33.333 7.76 5.53 41.88 2.52
6578 7395 8.801882 TTTTAGGTGTCTTTTCTGAGAAAGAA 57.198 30.769 7.76 0.00 44.63 2.52
6645 7462 2.844362 CCCCCATCGCCTGAGCTA 60.844 66.667 0.00 0.00 36.60 3.32
6646 7463 2.739784 CCCCATCGCCTGAGCTAG 59.260 66.667 0.00 0.00 36.60 3.42
6647 7464 2.030262 CCCATCGCCTGAGCTAGC 59.970 66.667 6.62 6.62 36.60 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 1.269448 GCCATTGTGGTTGTTCGTGAT 59.731 47.619 0.00 0.00 40.46 3.06
142 146 2.232208 TCGATCTCTTGCTCTTGCTTCA 59.768 45.455 0.00 0.00 40.48 3.02
152 158 3.431572 GGTATGCATCTTCGATCTCTTGC 59.568 47.826 0.19 0.00 0.00 4.01
220 227 0.670546 CCTGTCGATGCCGTTCAACT 60.671 55.000 0.00 0.00 37.05 3.16
235 242 1.553690 CCCGGTGAGATGTTCCCTGT 61.554 60.000 0.00 0.00 0.00 4.00
237 244 1.995626 CCCCGGTGAGATGTTCCCT 60.996 63.158 0.00 0.00 0.00 4.20
281 288 4.560108 CGGAAGAAGGTTCCTACGAAAAGA 60.560 45.833 2.45 0.00 36.45 2.52
314 325 3.813166 CGAAGAAGGTGAGCAAGGTTTTA 59.187 43.478 0.00 0.00 0.00 1.52
653 709 2.202743 CGAGATTTGGCGCGAGGA 60.203 61.111 12.10 0.00 32.71 3.71
675 731 0.106619 ACCCGAACTCGCCTCTATCT 60.107 55.000 0.00 0.00 38.18 1.98
696 754 1.623686 ATTCATGGGGTGGGAGGCT 60.624 57.895 0.00 0.00 0.00 4.58
749 807 2.291465 GTCCGACCCGTAAAAGCTTTTT 59.709 45.455 28.21 11.14 0.00 1.94
754 812 2.733671 GCGTCCGACCCGTAAAAGC 61.734 63.158 0.00 0.00 0.00 3.51
848 909 1.336702 GCATCTCTAGCAGATCCCGTG 60.337 57.143 0.00 0.00 40.20 4.94
916 980 1.860078 GACGAGTTGCTTTGGACGG 59.140 57.895 0.00 0.00 0.00 4.79
943 1008 4.803908 GGCTGGAGGCGAAAGGGG 62.804 72.222 0.00 0.00 42.94 4.79
953 1018 1.302832 GGTGTGTGGAAGGCTGGAG 60.303 63.158 0.00 0.00 0.00 3.86
954 1019 1.352622 AAGGTGTGTGGAAGGCTGGA 61.353 55.000 0.00 0.00 0.00 3.86
1044 1131 1.074090 TGGAGGCGGGGGATTATCA 60.074 57.895 0.00 0.00 0.00 2.15
1399 1492 3.425713 CGCACGGCAACAGAGCAT 61.426 61.111 0.00 0.00 35.83 3.79
1428 1816 1.526575 CGGCAAGAAACCACTGGCAT 61.527 55.000 0.00 0.00 38.47 4.40
1463 1852 2.034999 CCAACCTAAAGCCCGCCA 59.965 61.111 0.00 0.00 0.00 5.69
1572 1961 0.326595 TCCTACTGATGGCGCCAAAA 59.673 50.000 36.33 23.35 0.00 2.44
1642 2037 5.030820 ACCGCTTATAGCCTTATAGGGAAT 58.969 41.667 4.79 0.00 38.18 3.01
1706 2101 9.231297 ACATGATAACAGTTACTGCTAAAATGT 57.769 29.630 12.80 14.27 34.37 2.71
1733 2128 6.012113 ACATCCCAACATTCTTTCTCAATCA 58.988 36.000 0.00 0.00 0.00 2.57
1744 2139 1.474077 GTCCAGCACATCCCAACATTC 59.526 52.381 0.00 0.00 0.00 2.67
1807 2205 3.584848 AGGGCAATACTTCAGTCTCAGTT 59.415 43.478 0.00 0.00 0.00 3.16
1834 2232 4.740695 GCTAGCTCAAGTGTTATTAGACCG 59.259 45.833 7.70 0.00 0.00 4.79
1839 2237 4.202121 CCTCGGCTAGCTCAAGTGTTATTA 60.202 45.833 15.72 0.00 0.00 0.98
1914 2314 1.875514 CTATGTTGGCATCCATGGACG 59.124 52.381 18.99 10.85 36.58 4.79
1916 2316 3.668141 AACTATGTTGGCATCCATGGA 57.332 42.857 18.88 18.88 36.58 3.41
1917 2317 6.409524 AAATAACTATGTTGGCATCCATGG 57.590 37.500 4.97 4.97 36.58 3.66
1918 2318 7.231317 AGGTAAATAACTATGTTGGCATCCATG 59.769 37.037 9.66 0.00 36.58 3.66
1919 2319 7.297614 AGGTAAATAACTATGTTGGCATCCAT 58.702 34.615 5.62 5.62 36.58 3.41
1920 2320 6.668645 AGGTAAATAACTATGTTGGCATCCA 58.331 36.000 0.00 0.00 36.58 3.41
1921 2321 6.073222 CGAGGTAAATAACTATGTTGGCATCC 60.073 42.308 0.00 0.00 36.58 3.51
1922 2322 6.482308 ACGAGGTAAATAACTATGTTGGCATC 59.518 38.462 0.00 0.00 36.58 3.91
1924 2324 5.736813 ACGAGGTAAATAACTATGTTGGCA 58.263 37.500 0.00 0.00 0.00 4.92
1925 2325 7.958053 ATACGAGGTAAATAACTATGTTGGC 57.042 36.000 0.00 0.00 0.00 4.52
1926 2326 9.321562 ACAATACGAGGTAAATAACTATGTTGG 57.678 33.333 0.00 0.00 0.00 3.77
1928 2328 9.880157 ACACAATACGAGGTAAATAACTATGTT 57.120 29.630 0.00 0.00 0.00 2.71
1929 2329 9.309516 CACACAATACGAGGTAAATAACTATGT 57.690 33.333 0.00 0.00 0.00 2.29
1930 2330 9.309516 ACACACAATACGAGGTAAATAACTATG 57.690 33.333 0.00 0.00 0.00 2.23
1945 2345 5.914635 AGCTTTGAATGAAACACACAATACG 59.085 36.000 0.00 0.00 0.00 3.06
1976 2376 8.548877 TCCTTGTATGAAGAAAAGGCTATACTT 58.451 33.333 0.00 0.00 39.27 2.24
1993 2393 6.144854 CCGCATTTCATGTATTCCTTGTATG 58.855 40.000 0.00 0.00 0.00 2.39
1994 2394 5.827797 ACCGCATTTCATGTATTCCTTGTAT 59.172 36.000 0.00 0.00 0.00 2.29
1995 2395 5.189928 ACCGCATTTCATGTATTCCTTGTA 58.810 37.500 0.00 0.00 0.00 2.41
2014 2421 2.557056 TGATCTAGTACCATGCTACCGC 59.443 50.000 0.00 0.00 0.00 5.68
2045 2452 6.767902 TGAAGCTACTAATTTCCCAGCATTAG 59.232 38.462 0.00 0.00 38.47 1.73
2094 2503 9.866798 GTGCTGAACATATCTCATTGATAGATA 57.133 33.333 0.00 0.00 40.58 1.98
2101 2510 6.519382 TCTAGGTGCTGAACATATCTCATTG 58.481 40.000 0.00 0.00 0.00 2.82
2102 2511 6.737720 TCTAGGTGCTGAACATATCTCATT 57.262 37.500 0.00 0.00 0.00 2.57
2155 2576 6.070596 AGTGATCCTACTTTCATGACATCACA 60.071 38.462 11.56 0.00 40.82 3.58
2167 2588 8.140112 ACAGACTAATCAAGTGATCCTACTTT 57.860 34.615 0.00 0.00 38.78 2.66
2179 2600 5.222631 GCCAAACCAAACAGACTAATCAAG 58.777 41.667 0.00 0.00 0.00 3.02
2181 2602 3.252215 CGCCAAACCAAACAGACTAATCA 59.748 43.478 0.00 0.00 0.00 2.57
2182 2603 3.500680 TCGCCAAACCAAACAGACTAATC 59.499 43.478 0.00 0.00 0.00 1.75
2183 2604 3.482436 TCGCCAAACCAAACAGACTAAT 58.518 40.909 0.00 0.00 0.00 1.73
2185 2606 2.623878 TCGCCAAACCAAACAGACTA 57.376 45.000 0.00 0.00 0.00 2.59
2186 2607 1.981256 ATCGCCAAACCAAACAGACT 58.019 45.000 0.00 0.00 0.00 3.24
2202 2623 8.018677 ACAGTACAAAGTTGTTCAAGATATCG 57.981 34.615 1.35 0.00 42.35 2.92
2214 2635 9.708222 GCATCTTGAATATACAGTACAAAGTTG 57.292 33.333 0.00 0.00 0.00 3.16
2273 2694 2.247358 GCCTCATCTCCCCAAAAACAA 58.753 47.619 0.00 0.00 0.00 2.83
2281 2703 0.620556 TCAAAGTGCCTCATCTCCCC 59.379 55.000 0.00 0.00 0.00 4.81
2295 2717 8.831550 GCTTATAACCCTATCAAAGACTCAAAG 58.168 37.037 0.00 0.00 0.00 2.77
2296 2718 8.548877 AGCTTATAACCCTATCAAAGACTCAAA 58.451 33.333 0.00 0.00 0.00 2.69
2297 2719 8.090788 AGCTTATAACCCTATCAAAGACTCAA 57.909 34.615 0.00 0.00 0.00 3.02
2298 2720 7.676683 AGCTTATAACCCTATCAAAGACTCA 57.323 36.000 0.00 0.00 0.00 3.41
2299 2721 7.815549 GCTAGCTTATAACCCTATCAAAGACTC 59.184 40.741 7.70 0.00 0.00 3.36
2300 2722 7.290248 TGCTAGCTTATAACCCTATCAAAGACT 59.710 37.037 17.23 0.00 0.00 3.24
2301 2723 7.442656 TGCTAGCTTATAACCCTATCAAAGAC 58.557 38.462 17.23 0.00 0.00 3.01
2302 2724 7.612065 TGCTAGCTTATAACCCTATCAAAGA 57.388 36.000 17.23 0.00 0.00 2.52
2313 2735 7.658179 TGATTGTAGCATGCTAGCTTATAAC 57.342 36.000 27.54 16.03 43.70 1.89
2351 2773 6.615264 ACAAGAGCATCAAACTGCATATAG 57.385 37.500 0.00 0.00 44.77 1.31
2360 2782 6.259550 AGGTATTGAACAAGAGCATCAAAC 57.740 37.500 12.51 0.00 36.72 2.93
2368 2790 6.367422 GTCACAGAGAAGGTATTGAACAAGAG 59.633 42.308 0.00 0.00 0.00 2.85
2402 2824 0.105039 GCCTAGATCAACCAGGACGG 59.895 60.000 0.00 0.00 42.50 4.79
2467 2890 5.576447 AAAGGCGAAAGAAAGAACTTGAA 57.424 34.783 0.00 0.00 0.00 2.69
2550 2973 4.794278 TCAGGAGTGCGTTAATACTTGA 57.206 40.909 0.00 0.00 0.00 3.02
2561 2984 3.067461 AGCTAGAAACTATCAGGAGTGCG 59.933 47.826 0.00 0.00 0.00 5.34
2598 3260 9.678260 GATAATCTAGTCCCAGAAAATGCATAT 57.322 33.333 0.00 0.00 0.00 1.78
2618 3280 5.163513 CCTGCACAAAACCAAGTGATAATC 58.836 41.667 0.00 0.00 37.97 1.75
2622 3284 2.101249 CACCTGCACAAAACCAAGTGAT 59.899 45.455 0.00 0.00 37.97 3.06
2767 3429 5.852738 ATCAAGAACTCACAGAATCAACG 57.147 39.130 0.00 0.00 0.00 4.10
2828 3490 0.609957 TTGGCAGCTTGGTCATCCAG 60.610 55.000 0.00 0.00 45.22 3.86
2840 3502 5.762218 ACTATTTCAGATATCTGTTGGCAGC 59.238 40.000 27.80 0.00 44.12 5.25
3295 3961 5.596845 TGGGAAATGCTGTTTCAAACTAAC 58.403 37.500 14.26 0.00 0.00 2.34
3385 4051 5.895928 TCACTCTCAATTATTCTCCAGTCG 58.104 41.667 0.00 0.00 0.00 4.18
3482 4148 5.486526 TGGACAAAGCAAGAAAACACAAAT 58.513 33.333 0.00 0.00 0.00 2.32
3689 4360 2.033675 CAGATGCACTGTGACAGCAAAA 59.966 45.455 13.37 0.00 42.15 2.44
3691 4362 1.232119 CAGATGCACTGTGACAGCAA 58.768 50.000 13.37 0.00 42.15 3.91
3708 4379 2.734606 CCAAAATGCACACAATCAGCAG 59.265 45.455 0.00 0.00 42.14 4.24
3719 4390 8.650714 GTTGAGATAAAGATTTCCAAAATGCAC 58.349 33.333 0.00 0.00 0.00 4.57
3732 4403 9.911788 AATATGGTCTTGTGTTGAGATAAAGAT 57.088 29.630 0.00 0.00 0.00 2.40
3733 4404 9.166173 CAATATGGTCTTGTGTTGAGATAAAGA 57.834 33.333 0.00 0.00 0.00 2.52
3734 4405 7.912250 GCAATATGGTCTTGTGTTGAGATAAAG 59.088 37.037 0.00 0.00 0.00 1.85
3747 4421 6.932356 AGTGAATAGTGCAATATGGTCTTG 57.068 37.500 7.55 0.00 0.00 3.02
3748 4422 9.632638 AATAAGTGAATAGTGCAATATGGTCTT 57.367 29.630 7.55 13.28 0.00 3.01
3829 4503 3.304257 GCAAACACCACACAGAGAGAATG 60.304 47.826 0.00 0.00 0.00 2.67
3849 4524 2.849943 AGGGGACTTATGTGTTATGGCA 59.150 45.455 0.00 0.00 37.44 4.92
3866 4541 3.567164 CACTATAATTTCTGCTGCAGGGG 59.433 47.826 27.79 7.90 31.51 4.79
3949 4624 4.201950 ACAATTCATTCATGCCGAGCTTAC 60.202 41.667 0.00 0.00 0.00 2.34
3956 4631 2.098607 AGCTCACAATTCATTCATGCCG 59.901 45.455 0.00 0.00 0.00 5.69
4019 4697 9.801714 CAAATTACAGATTGCATCAAAGAAAAC 57.198 29.630 0.00 0.00 0.00 2.43
4035 4713 8.623903 GCACAAATGGATCTATCAAATTACAGA 58.376 33.333 0.00 0.00 0.00 3.41
4043 4721 4.166725 AGAGGGCACAAATGGATCTATCAA 59.833 41.667 0.00 0.00 0.00 2.57
4046 4724 3.461085 ACAGAGGGCACAAATGGATCTAT 59.539 43.478 0.00 0.00 0.00 1.98
4071 4749 6.635030 AGGTTTCTAGATGGTGAAAACAAC 57.365 37.500 0.00 0.00 40.99 3.32
4124 4802 4.566488 CCCTCCAGACTTTGAAATAGCTGT 60.566 45.833 0.00 0.00 0.00 4.40
4129 4807 3.265489 ACCCCCTCCAGACTTTGAAATA 58.735 45.455 0.00 0.00 0.00 1.40
4197 4875 7.041780 GGCATGTGTATATAACTGAGGAACTTG 60.042 40.741 0.00 0.00 41.55 3.16
4198 4876 6.992715 GGCATGTGTATATAACTGAGGAACTT 59.007 38.462 0.00 0.00 41.55 2.66
4221 4899 5.932619 ATATACAACCCAAAGGAAAAGGC 57.067 39.130 0.00 0.00 36.73 4.35
4450 5131 8.780249 GTTTTGACTACTGGTATTTTTGAGCTA 58.220 33.333 0.00 0.00 0.00 3.32
4552 5338 5.242838 CAGGAAAAAGGCATGGTAGTTTACA 59.757 40.000 0.00 0.00 0.00 2.41
4654 5443 4.031418 TGCAACATCTGAAACACAGTTG 57.969 40.909 0.00 0.00 46.07 3.16
4678 5467 9.093970 CCATACTTCGAACAATTTGACTACATA 57.906 33.333 2.79 0.00 0.00 2.29
4784 5575 5.864986 ACAACACAAACTCTTTCTGTAACG 58.135 37.500 0.00 0.00 0.00 3.18
4909 5703 5.741388 AAAGATTACGAATCACATGGAGC 57.259 39.130 0.00 0.00 40.42 4.70
4961 5755 7.576750 TTTACGATTACTGACAGTTGATCAC 57.423 36.000 14.50 0.00 0.00 3.06
4966 5760 6.422701 TCTGGTTTTACGATTACTGACAGTTG 59.577 38.462 14.50 4.50 0.00 3.16
4980 5774 4.753107 TCTTAAGCAACCTCTGGTTTTACG 59.247 41.667 0.00 0.00 44.33 3.18
5038 5834 4.777463 TGGCTAAGTAATACTCCCTTTGC 58.223 43.478 0.00 0.00 36.60 3.68
5140 5938 5.163723 CCAACAAAGATGCACGTTATGAGAT 60.164 40.000 0.00 0.00 0.00 2.75
5225 6023 7.544804 AAGGGAGAGCAAGAAATTTTACAAT 57.455 32.000 0.00 0.00 0.00 2.71
5230 6028 6.057533 CCAAAAAGGGAGAGCAAGAAATTTT 58.942 36.000 0.00 0.00 0.00 1.82
5319 6117 3.012518 CCATCTCATGAGTCAACCCAAC 58.987 50.000 21.92 0.00 0.00 3.77
5379 6177 0.255890 TGCAGGAATGCCTACCTTCC 59.744 55.000 0.00 0.00 44.80 3.46
5458 6264 0.657368 GCGTGCAAGTACAGTTGTGC 60.657 55.000 0.59 0.00 37.51 4.57
5476 6282 7.437267 AGCATTGCTTGTAATATTCATGAAAGC 59.563 33.333 13.09 14.76 33.89 3.51
5504 6310 6.934645 TGAAATGAGTAGTGACCACTTTAAGG 59.065 38.462 8.06 0.00 42.54 2.69
5511 6317 4.926238 CAGAGTGAAATGAGTAGTGACCAC 59.074 45.833 0.00 0.00 0.00 4.16
5582 6390 3.053095 ACATCAATCCCCTCTCTGCATTT 60.053 43.478 0.00 0.00 0.00 2.32
5583 6391 2.512896 ACATCAATCCCCTCTCTGCATT 59.487 45.455 0.00 0.00 0.00 3.56
5743 6555 8.961294 ATCACCATTGATGTCAAAAAGAAAAA 57.039 26.923 0.00 0.00 41.23 1.94
5744 6556 8.202811 TGATCACCATTGATGTCAAAAAGAAAA 58.797 29.630 0.00 0.00 42.95 2.29
5745 6557 7.724287 TGATCACCATTGATGTCAAAAAGAAA 58.276 30.769 0.00 0.00 42.95 2.52
5746 6558 7.287512 TGATCACCATTGATGTCAAAAAGAA 57.712 32.000 0.00 0.00 42.95 2.52
5747 6559 6.897706 TGATCACCATTGATGTCAAAAAGA 57.102 33.333 0.00 0.00 42.95 2.52
5748 6560 6.090358 GCTTGATCACCATTGATGTCAAAAAG 59.910 38.462 0.00 0.00 42.95 2.27
5749 6561 5.927689 GCTTGATCACCATTGATGTCAAAAA 59.072 36.000 0.00 0.00 42.95 1.94
5750 6562 5.010820 TGCTTGATCACCATTGATGTCAAAA 59.989 36.000 0.00 0.00 42.95 2.44
5751 6563 4.523558 TGCTTGATCACCATTGATGTCAAA 59.476 37.500 0.00 0.00 42.95 2.69
5752 6564 4.080687 TGCTTGATCACCATTGATGTCAA 58.919 39.130 0.00 0.00 42.95 3.18
5753 6565 3.688235 TGCTTGATCACCATTGATGTCA 58.312 40.909 0.00 0.00 42.95 3.58
5754 6566 4.913335 ATGCTTGATCACCATTGATGTC 57.087 40.909 0.00 0.00 42.95 3.06
5755 6567 6.737622 GCAATATGCTTGATCACCATTGATGT 60.738 38.462 11.95 0.00 40.54 3.06
5756 6568 5.633601 GCAATATGCTTGATCACCATTGATG 59.366 40.000 11.95 10.07 40.54 3.07
5757 6569 5.779922 GCAATATGCTTGATCACCATTGAT 58.220 37.500 11.95 0.87 42.00 2.57
5758 6570 5.190992 GCAATATGCTTGATCACCATTGA 57.809 39.130 11.95 0.00 40.96 2.57
5772 6584 5.178067 GGGCAATAATGAACAAGCAATATGC 59.822 40.000 0.00 0.00 45.46 3.14
5773 6585 5.403166 CGGGCAATAATGAACAAGCAATATG 59.597 40.000 0.00 0.00 0.00 1.78
5774 6586 5.068987 ACGGGCAATAATGAACAAGCAATAT 59.931 36.000 0.00 0.00 0.00 1.28
5775 6587 4.400884 ACGGGCAATAATGAACAAGCAATA 59.599 37.500 0.00 0.00 0.00 1.90
5776 6588 3.195396 ACGGGCAATAATGAACAAGCAAT 59.805 39.130 0.00 0.00 0.00 3.56
5777 6589 2.560542 ACGGGCAATAATGAACAAGCAA 59.439 40.909 0.00 0.00 0.00 3.91
5802 6614 1.071605 CAGAAAAGAAGCGAGTCCCG 58.928 55.000 0.00 0.00 42.21 5.14
5863 6675 5.147032 ACAAGGAAAATCATGAGGGTGAAA 58.853 37.500 0.09 0.00 0.00 2.69
5887 6699 5.949354 TCGACCATGGTCCTGAATTAAAATT 59.051 36.000 34.05 0.00 41.76 1.82
5962 6775 5.942236 TGTCTCCTCCATTTTCTTCTCAATG 59.058 40.000 0.00 0.00 0.00 2.82
6030 6843 9.220635 TCGCTTGTTATTAATTTTGATGAATCG 57.779 29.630 0.00 0.00 0.00 3.34
6177 6990 5.530915 CCTGTGTTCTAAACTTTGATGGTCA 59.469 40.000 0.00 0.00 0.00 4.02
6178 6991 5.763204 TCCTGTGTTCTAAACTTTGATGGTC 59.237 40.000 0.00 0.00 0.00 4.02
6179 6992 5.690865 TCCTGTGTTCTAAACTTTGATGGT 58.309 37.500 0.00 0.00 0.00 3.55
6311 7128 8.884124 AGATTAATTGAATTTCAGAGGGAACA 57.116 30.769 0.00 0.00 34.56 3.18
6352 7169 7.422465 ACATACTGCATCAAAACCCATATTT 57.578 32.000 0.00 0.00 0.00 1.40
6380 7197 3.003378 GCAGGACACAAAAACTACCAGAC 59.997 47.826 0.00 0.00 0.00 3.51
6428 7245 7.018449 AGGGGGTAATTAACAAGTAAAGTGGTA 59.982 37.037 2.32 0.00 0.00 3.25
6433 7250 5.587443 CGGAGGGGGTAATTAACAAGTAAAG 59.413 44.000 2.32 0.00 0.00 1.85
6446 7263 1.147333 TTTTGGAACGGAGGGGGTAA 58.853 50.000 0.00 0.00 0.00 2.85
6450 7267 3.577805 ATCTATTTTGGAACGGAGGGG 57.422 47.619 0.00 0.00 0.00 4.79
6451 7268 5.681639 AGTAATCTATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6452 7269 6.346096 TGAGTAATCTATTTTGGAACGGAGG 58.654 40.000 0.00 0.00 0.00 4.30
6453 7270 7.549488 AGTTGAGTAATCTATTTTGGAACGGAG 59.451 37.037 0.00 0.00 0.00 4.63
6454 7271 7.391620 AGTTGAGTAATCTATTTTGGAACGGA 58.608 34.615 0.00 0.00 0.00 4.69
6455 7272 7.611213 AGTTGAGTAATCTATTTTGGAACGG 57.389 36.000 0.00 0.00 0.00 4.44
6490 7307 7.716799 ATAGATGACCCAACTTTGCATTAAA 57.283 32.000 0.00 0.00 0.00 1.52
6491 7308 7.716799 AATAGATGACCCAACTTTGCATTAA 57.283 32.000 0.00 0.00 0.00 1.40
6492 7309 7.716799 AAATAGATGACCCAACTTTGCATTA 57.283 32.000 0.00 0.00 0.00 1.90
6493 7310 6.610075 AAATAGATGACCCAACTTTGCATT 57.390 33.333 0.00 0.00 0.00 3.56
6494 7311 6.400568 CAAAATAGATGACCCAACTTTGCAT 58.599 36.000 0.00 0.00 0.00 3.96
6495 7312 5.279406 CCAAAATAGATGACCCAACTTTGCA 60.279 40.000 0.00 0.00 0.00 4.08
6496 7313 5.047377 TCCAAAATAGATGACCCAACTTTGC 60.047 40.000 0.00 0.00 0.00 3.68
6497 7314 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
6498 7315 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
6499 7316 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
6500 7317 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
6501 7318 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
6502 7319 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
6503 7320 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
6504 7321 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
6505 7322 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
6506 7323 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6507 7324 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6508 7325 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6509 7326 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6510 7327 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6511 7328 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6512 7329 3.119029 CGTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
6513 7330 2.354403 CGTACTCCCTCCGTTCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
6514 7331 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
6515 7332 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
6516 7333 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
6517 7334 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
6518 7335 1.606189 GATACGTACTCCCTCCGTTCC 59.394 57.143 0.00 0.00 36.12 3.62
6519 7336 2.290093 CTGATACGTACTCCCTCCGTTC 59.710 54.545 0.00 0.00 36.12 3.95
6520 7337 2.092753 TCTGATACGTACTCCCTCCGTT 60.093 50.000 0.00 0.00 36.12 4.44
6521 7338 1.487976 TCTGATACGTACTCCCTCCGT 59.512 52.381 0.00 0.00 38.53 4.69
6522 7339 2.251409 TCTGATACGTACTCCCTCCG 57.749 55.000 0.00 0.00 0.00 4.63
6523 7340 7.337167 TCTTATATCTGATACGTACTCCCTCC 58.663 42.308 0.00 0.00 0.00 4.30
6524 7341 8.832521 CATCTTATATCTGATACGTACTCCCTC 58.167 40.741 0.00 0.00 0.00 4.30
6525 7342 8.549731 TCATCTTATATCTGATACGTACTCCCT 58.450 37.037 0.00 0.00 0.00 4.20
6526 7343 8.614346 GTCATCTTATATCTGATACGTACTCCC 58.386 40.741 0.00 0.00 0.00 4.30
6527 7344 9.386010 AGTCATCTTATATCTGATACGTACTCC 57.614 37.037 0.00 0.00 0.00 3.85
6544 7361 9.273016 CAGAAAAGACACCTAAAAGTCATCTTA 57.727 33.333 0.00 0.00 37.23 2.10
6545 7362 7.993183 TCAGAAAAGACACCTAAAAGTCATCTT 59.007 33.333 0.00 0.00 37.23 2.40
6546 7363 7.509546 TCAGAAAAGACACCTAAAAGTCATCT 58.490 34.615 0.00 0.00 37.23 2.90
6547 7364 7.657761 TCTCAGAAAAGACACCTAAAAGTCATC 59.342 37.037 0.00 0.00 37.23 2.92
6548 7365 7.509546 TCTCAGAAAAGACACCTAAAAGTCAT 58.490 34.615 0.00 0.00 37.23 3.06
6549 7366 6.884832 TCTCAGAAAAGACACCTAAAAGTCA 58.115 36.000 0.00 0.00 37.23 3.41
6550 7367 7.787725 TTCTCAGAAAAGACACCTAAAAGTC 57.212 36.000 0.00 0.00 35.02 3.01
6551 7368 8.047310 TCTTTCTCAGAAAAGACACCTAAAAGT 58.953 33.333 0.48 0.00 39.67 2.66
6552 7369 8.438676 TCTTTCTCAGAAAAGACACCTAAAAG 57.561 34.615 0.48 0.00 39.67 2.27
6553 7370 8.801882 TTCTTTCTCAGAAAAGACACCTAAAA 57.198 30.769 0.48 0.00 43.18 1.52
6554 7371 8.801882 TTTCTTTCTCAGAAAAGACACCTAAA 57.198 30.769 0.48 0.00 46.68 1.85
6628 7445 2.844362 TAGCTCAGGCGATGGGGG 60.844 66.667 0.00 0.00 44.37 5.40
6629 7446 2.739784 CTAGCTCAGGCGATGGGG 59.260 66.667 0.00 0.00 44.37 4.96
6630 7447 2.030262 GCTAGCTCAGGCGATGGG 59.970 66.667 7.70 0.00 44.37 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.