Multiple sequence alignment - TraesCS5B01G035100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G035100 | chr5B | 100.000 | 4558 | 0 | 0 | 1 | 4558 | 38161178 | 38165735 | 0.000000e+00 | 8418.0 |
1 | TraesCS5B01G035100 | chr5B | 83.531 | 844 | 122 | 16 | 2724 | 3559 | 41255830 | 41254996 | 0.000000e+00 | 773.0 |
2 | TraesCS5B01G035100 | chr5B | 76.631 | 1027 | 224 | 16 | 2404 | 3422 | 683997983 | 683996965 | 1.850000e-153 | 553.0 |
3 | TraesCS5B01G035100 | chr5B | 73.306 | 1446 | 300 | 57 | 1339 | 2740 | 41260252 | 41258849 | 1.930000e-123 | 453.0 |
4 | TraesCS5B01G035100 | chr5B | 77.259 | 664 | 138 | 8 | 2545 | 3198 | 38050598 | 38049938 | 1.200000e-100 | 377.0 |
5 | TraesCS5B01G035100 | chr5A | 94.742 | 3842 | 170 | 17 | 4 | 3828 | 32709506 | 32705680 | 0.000000e+00 | 5947.0 |
6 | TraesCS5B01G035100 | chr5A | 81.747 | 767 | 114 | 18 | 2825 | 3577 | 33176875 | 33176121 | 6.480000e-173 | 617.0 |
7 | TraesCS5B01G035100 | chr5A | 86.523 | 371 | 35 | 9 | 4192 | 4558 | 32705454 | 32705095 | 1.190000e-105 | 394.0 |
8 | TraesCS5B01G035100 | chr5A | 89.333 | 225 | 21 | 2 | 3931 | 4152 | 32705682 | 32705458 | 3.470000e-71 | 279.0 |
9 | TraesCS5B01G035100 | chr5D | 94.665 | 3655 | 158 | 7 | 1 | 3653 | 42929437 | 42925818 | 0.000000e+00 | 5635.0 |
10 | TraesCS5B01G035100 | chr5D | 87.382 | 634 | 61 | 7 | 3931 | 4558 | 42925470 | 42924850 | 0.000000e+00 | 710.0 |
11 | TraesCS5B01G035100 | chr5D | 78.037 | 1029 | 213 | 13 | 2405 | 3426 | 541944426 | 541943404 | 1.790000e-178 | 636.0 |
12 | TraesCS5B01G035100 | chr5D | 76.260 | 1032 | 225 | 20 | 2404 | 3422 | 541948923 | 541947899 | 8.680000e-147 | 531.0 |
13 | TraesCS5B01G035100 | chr5D | 85.000 | 520 | 55 | 10 | 2637 | 3143 | 42948267 | 42947758 | 1.460000e-139 | 507.0 |
14 | TraesCS5B01G035100 | chr5D | 93.814 | 194 | 11 | 1 | 3636 | 3828 | 42925661 | 42925468 | 1.600000e-74 | 291.0 |
15 | TraesCS5B01G035100 | chr5D | 81.013 | 237 | 35 | 7 | 2407 | 2641 | 541937629 | 541937401 | 3.620000e-41 | 180.0 |
16 | TraesCS5B01G035100 | chr6D | 96.091 | 486 | 19 | 0 | 1382 | 1867 | 269966351 | 269966836 | 0.000000e+00 | 793.0 |
17 | TraesCS5B01G035100 | chr6D | 95.445 | 483 | 22 | 0 | 1385 | 1867 | 269965684 | 269965202 | 0.000000e+00 | 771.0 |
18 | TraesCS5B01G035100 | chr4A | 95.349 | 473 | 22 | 0 | 1395 | 1867 | 360414408 | 360413936 | 0.000000e+00 | 752.0 |
19 | TraesCS5B01G035100 | chr4A | 78.116 | 1019 | 211 | 12 | 2404 | 3416 | 627366502 | 627367514 | 1.790000e-178 | 636.0 |
20 | TraesCS5B01G035100 | chr4A | 76.598 | 1064 | 225 | 22 | 2368 | 3416 | 627362075 | 627363129 | 8.560000e-157 | 564.0 |
21 | TraesCS5B01G035100 | chr3D | 95.475 | 221 | 10 | 0 | 1647 | 1867 | 608502017 | 608501797 | 2.020000e-93 | 353.0 |
22 | TraesCS5B01G035100 | chr1D | 91.304 | 46 | 2 | 2 | 3121 | 3165 | 7444717 | 7444761 | 1.370000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G035100 | chr5B | 38161178 | 38165735 | 4557 | False | 8418.000000 | 8418 | 100.000000 | 1 | 4558 | 1 | chr5B.!!$F1 | 4557 |
1 | TraesCS5B01G035100 | chr5B | 41254996 | 41260252 | 5256 | True | 613.000000 | 773 | 78.418500 | 1339 | 3559 | 2 | chr5B.!!$R3 | 2220 |
2 | TraesCS5B01G035100 | chr5B | 683996965 | 683997983 | 1018 | True | 553.000000 | 553 | 76.631000 | 2404 | 3422 | 1 | chr5B.!!$R2 | 1018 |
3 | TraesCS5B01G035100 | chr5B | 38049938 | 38050598 | 660 | True | 377.000000 | 377 | 77.259000 | 2545 | 3198 | 1 | chr5B.!!$R1 | 653 |
4 | TraesCS5B01G035100 | chr5A | 32705095 | 32709506 | 4411 | True | 2206.666667 | 5947 | 90.199333 | 4 | 4558 | 3 | chr5A.!!$R2 | 4554 |
5 | TraesCS5B01G035100 | chr5A | 33176121 | 33176875 | 754 | True | 617.000000 | 617 | 81.747000 | 2825 | 3577 | 1 | chr5A.!!$R1 | 752 |
6 | TraesCS5B01G035100 | chr5D | 42924850 | 42929437 | 4587 | True | 2212.000000 | 5635 | 91.953667 | 1 | 4558 | 3 | chr5D.!!$R3 | 4557 |
7 | TraesCS5B01G035100 | chr5D | 541943404 | 541948923 | 5519 | True | 583.500000 | 636 | 77.148500 | 2404 | 3426 | 2 | chr5D.!!$R4 | 1022 |
8 | TraesCS5B01G035100 | chr5D | 42947758 | 42948267 | 509 | True | 507.000000 | 507 | 85.000000 | 2637 | 3143 | 1 | chr5D.!!$R1 | 506 |
9 | TraesCS5B01G035100 | chr4A | 627362075 | 627367514 | 5439 | False | 600.000000 | 636 | 77.357000 | 2368 | 3416 | 2 | chr4A.!!$F1 | 1048 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
285 | 288 | 0.244994 | AGCTGACCGACTAGTGCTTG | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 | F |
1072 | 1095 | 0.539051 | ATCTGCAACCTCTTCCGGAG | 59.461 | 55.000 | 3.34 | 0.00 | 41.51 | 4.63 | F |
1333 | 1356 | 1.129809 | GCGTCGAACACCACAATCG | 59.870 | 57.895 | 0.00 | 0.00 | 37.90 | 3.34 | F |
2606 | 2700 | 0.095417 | GCAACGATCGAGTTCTTGGC | 59.905 | 55.000 | 24.34 | 3.07 | 30.96 | 4.52 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1555 | 1583 | 0.611896 | GTGAGGTTTGGGGTGATGGG | 60.612 | 60.000 | 0.00 | 0.0 | 0.00 | 4.00 | R |
2606 | 2700 | 0.396139 | CCATTCCATGACCCCCACAG | 60.396 | 60.000 | 0.00 | 0.0 | 0.00 | 3.66 | R |
3242 | 11231 | 2.704572 | CGGAGCTTCTTCTGGTGAAAT | 58.295 | 47.619 | 0.00 | 0.0 | 0.00 | 2.17 | R |
4205 | 12373 | 0.037303 | AACATCACCAGTGAGCAGGG | 59.963 | 55.000 | 6.63 | 0.0 | 43.61 | 4.45 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 2.032030 | GTCAGCATGCGTGTAAACAGTT | 60.032 | 45.455 | 13.01 | 0.00 | 34.76 | 3.16 |
285 | 288 | 0.244994 | AGCTGACCGACTAGTGCTTG | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
370 | 373 | 3.443329 | TGCATTCACATGTGGGACATTAC | 59.557 | 43.478 | 25.16 | 8.05 | 44.52 | 1.89 |
398 | 404 | 6.678568 | AGAGCTATACTTTGACTGGCATAT | 57.321 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
399 | 405 | 6.462500 | AGAGCTATACTTTGACTGGCATATG | 58.538 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
400 | 406 | 6.268617 | AGAGCTATACTTTGACTGGCATATGA | 59.731 | 38.462 | 6.97 | 0.00 | 0.00 | 2.15 |
501 | 507 | 7.032377 | ACTCAATTTCAGAGAAACCTTCAAC | 57.968 | 36.000 | 0.00 | 0.00 | 36.91 | 3.18 |
509 | 515 | 4.570772 | CAGAGAAACCTTCAACAGAAACGA | 59.429 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
595 | 601 | 8.821686 | ATACAAATGGGTGACAAGATTTATCA | 57.178 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
632 | 638 | 6.357367 | ACTGTGGTATCACTTTCTTTCACTT | 58.643 | 36.000 | 7.81 | 0.00 | 43.94 | 3.16 |
633 | 639 | 6.828785 | ACTGTGGTATCACTTTCTTTCACTTT | 59.171 | 34.615 | 7.81 | 0.00 | 43.94 | 2.66 |
665 | 673 | 8.403236 | ACTTGTCAATACAAAGGACTAAACAAC | 58.597 | 33.333 | 0.00 | 0.00 | 44.79 | 3.32 |
667 | 675 | 6.829298 | TGTCAATACAAAGGACTAAACAACCA | 59.171 | 34.615 | 0.00 | 0.00 | 30.91 | 3.67 |
768 | 776 | 0.904649 | TCAACGCTGATCTCACCCAT | 59.095 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
908 | 918 | 2.301296 | AGGATCCATGGTCTATCAAGCG | 59.699 | 50.000 | 15.82 | 0.00 | 0.00 | 4.68 |
918 | 928 | 3.382546 | GGTCTATCAAGCGTAGGGTACAA | 59.617 | 47.826 | 0.00 | 0.00 | 0.00 | 2.41 |
948 | 963 | 6.941436 | AGATAGAAGGAAAATGAGATGGCATC | 59.059 | 38.462 | 19.78 | 19.78 | 0.00 | 3.91 |
977 | 1000 | 2.282462 | AAAGGCAGTTCTGCGGGG | 60.282 | 61.111 | 16.84 | 0.00 | 35.24 | 5.73 |
998 | 1021 | 3.558033 | GAGTAACCACCAAGTTCCCAAA | 58.442 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
1071 | 1094 | 1.757118 | CTATCTGCAACCTCTTCCGGA | 59.243 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
1072 | 1095 | 0.539051 | ATCTGCAACCTCTTCCGGAG | 59.461 | 55.000 | 3.34 | 0.00 | 41.51 | 4.63 |
1095 | 1118 | 1.377202 | CATAGCGTTGCCAGGGTGT | 60.377 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
1117 | 1140 | 1.298339 | GACAAGTGTGGCAACGTGC | 60.298 | 57.895 | 12.67 | 0.00 | 44.08 | 5.34 |
1131 | 1154 | 2.675242 | CGTGCCAATCCCCTACCCA | 61.675 | 63.158 | 0.00 | 0.00 | 0.00 | 4.51 |
1333 | 1356 | 1.129809 | GCGTCGAACACCACAATCG | 59.870 | 57.895 | 0.00 | 0.00 | 37.90 | 3.34 |
1447 | 1474 | 2.487775 | TGGGTATCATTGGTGGCTACT | 58.512 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1476 | 1503 | 2.579657 | CCCAGACCTGTACGTGGCA | 61.580 | 63.158 | 0.00 | 0.00 | 0.00 | 4.92 |
1836 | 1865 | 1.885887 | TCAAACAGCTATTGTGTGGGC | 59.114 | 47.619 | 10.29 | 0.00 | 43.94 | 5.36 |
1980 | 2019 | 3.012518 | GGATAAGCAACTGTCACTGCAT | 58.987 | 45.455 | 5.81 | 0.00 | 41.17 | 3.96 |
2061 | 2135 | 8.088365 | AGGACTATATTTTGAGTTTTGGTTTGC | 58.912 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2067 | 2141 | 5.982465 | TTTGAGTTTTGGTTTGCTTATGC | 57.018 | 34.783 | 0.00 | 0.00 | 40.20 | 3.14 |
2073 | 2147 | 6.223120 | AGTTTTGGTTTGCTTATGCCTTTAG | 58.777 | 36.000 | 0.00 | 0.00 | 38.71 | 1.85 |
2120 | 2194 | 4.580868 | TCTCTTCAGACATAGACGAGTGT | 58.419 | 43.478 | 0.00 | 0.00 | 34.21 | 3.55 |
2266 | 2340 | 1.831106 | TGGATGTCGACCTGTGCTAAT | 59.169 | 47.619 | 14.12 | 0.00 | 0.00 | 1.73 |
2297 | 2371 | 5.190925 | TGAACAGGTGGTTATAGGTAAGCAT | 59.809 | 40.000 | 3.76 | 0.00 | 46.43 | 3.79 |
2304 | 2378 | 5.867716 | GTGGTTATAGGTAAGCATCATACCG | 59.132 | 44.000 | 3.76 | 0.00 | 46.43 | 4.02 |
2313 | 2388 | 5.047235 | GGTAAGCATCATACCGGAGAGTATT | 60.047 | 44.000 | 9.46 | 2.22 | 33.97 | 1.89 |
2606 | 2700 | 0.095417 | GCAACGATCGAGTTCTTGGC | 59.905 | 55.000 | 24.34 | 3.07 | 30.96 | 4.52 |
2643 | 2737 | 9.628500 | ATGGAATGGTTTATAGAGGAACTTTAC | 57.372 | 33.333 | 0.00 | 0.00 | 41.55 | 2.01 |
2792 | 5932 | 0.811616 | GCTTGGAGGTAGATGTGCCG | 60.812 | 60.000 | 0.00 | 0.00 | 32.57 | 5.69 |
2816 | 5956 | 6.129088 | CGATGTTGGTGTATGAGTTCATATCG | 60.129 | 42.308 | 5.22 | 5.49 | 40.53 | 2.92 |
3029 | 6175 | 1.202382 | GCAGATTTTGGAGCATCAGCC | 60.202 | 52.381 | 0.00 | 0.00 | 43.56 | 4.85 |
3165 | 11153 | 5.104067 | AGTTTTGGGGTTGTTCTTCTAGAGT | 60.104 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3168 | 11156 | 5.740290 | TGGGGTTGTTCTTCTAGAGTTAG | 57.260 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
3237 | 11226 | 1.399343 | CGCTATCGCATGCCTTCATTG | 60.399 | 52.381 | 13.15 | 1.77 | 35.30 | 2.82 |
3242 | 11231 | 0.522626 | CGCATGCCTTCATTGTGACA | 59.477 | 50.000 | 13.15 | 0.00 | 0.00 | 3.58 |
3272 | 11261 | 4.926238 | CAGAAGAAGCTCCGCGATATATTT | 59.074 | 41.667 | 8.23 | 0.00 | 0.00 | 1.40 |
3494 | 11484 | 9.656040 | GAATCATCAATGTCTATAGCTTCTGAT | 57.344 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3534 | 11524 | 1.608590 | CGAACACAGCCAAATTGGTCT | 59.391 | 47.619 | 14.17 | 8.39 | 40.46 | 3.85 |
3547 | 11537 | 6.205658 | GCCAAATTGGTCTTAGATGTAGATCC | 59.794 | 42.308 | 14.17 | 0.00 | 40.46 | 3.36 |
3599 | 11589 | 2.682846 | TGCTGGGGCAATAGTGGG | 59.317 | 61.111 | 0.00 | 0.00 | 46.36 | 4.61 |
3600 | 11590 | 2.834968 | GCTGGGGCAATAGTGGGC | 60.835 | 66.667 | 0.00 | 0.00 | 38.54 | 5.36 |
3604 | 11594 | 1.227853 | GGGGCAATAGTGGGCGTAG | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
3805 | 11970 | 7.750903 | GCTTCAATTTTACTCACTGGTTCATAC | 59.249 | 37.037 | 0.00 | 0.00 | 0.00 | 2.39 |
3837 | 12002 | 7.534723 | TTACTACATGTTGAGGTCTACTTGT | 57.465 | 36.000 | 14.37 | 14.30 | 40.68 | 3.16 |
3838 | 12003 | 6.420913 | ACTACATGTTGAGGTCTACTTGTT | 57.579 | 37.500 | 14.37 | 0.86 | 39.33 | 2.83 |
3839 | 12004 | 6.456501 | ACTACATGTTGAGGTCTACTTGTTC | 58.543 | 40.000 | 14.37 | 0.00 | 39.33 | 3.18 |
3840 | 12005 | 5.290493 | ACATGTTGAGGTCTACTTGTTCA | 57.710 | 39.130 | 0.00 | 0.00 | 36.93 | 3.18 |
3841 | 12006 | 5.057149 | ACATGTTGAGGTCTACTTGTTCAC | 58.943 | 41.667 | 0.00 | 0.00 | 36.93 | 3.18 |
3842 | 12007 | 4.746535 | TGTTGAGGTCTACTTGTTCACA | 57.253 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
3843 | 12008 | 5.290493 | TGTTGAGGTCTACTTGTTCACAT | 57.710 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
3844 | 12009 | 5.680619 | TGTTGAGGTCTACTTGTTCACATT | 58.319 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
3845 | 12010 | 6.119536 | TGTTGAGGTCTACTTGTTCACATTT | 58.880 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3846 | 12011 | 7.276658 | TGTTGAGGTCTACTTGTTCACATTTA | 58.723 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3847 | 12012 | 7.936847 | TGTTGAGGTCTACTTGTTCACATTTAT | 59.063 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3848 | 12013 | 7.905604 | TGAGGTCTACTTGTTCACATTTATG | 57.094 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3849 | 12014 | 7.676004 | TGAGGTCTACTTGTTCACATTTATGA | 58.324 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
3850 | 12015 | 8.321353 | TGAGGTCTACTTGTTCACATTTATGAT | 58.679 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
3851 | 12016 | 8.723942 | AGGTCTACTTGTTCACATTTATGATC | 57.276 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
3852 | 12017 | 8.543774 | AGGTCTACTTGTTCACATTTATGATCT | 58.456 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
3853 | 12018 | 8.821894 | GGTCTACTTGTTCACATTTATGATCTC | 58.178 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
3854 | 12019 | 8.821894 | GTCTACTTGTTCACATTTATGATCTCC | 58.178 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
3855 | 12020 | 7.987458 | TCTACTTGTTCACATTTATGATCTCCC | 59.013 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3856 | 12021 | 6.484288 | ACTTGTTCACATTTATGATCTCCCA | 58.516 | 36.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3857 | 12022 | 6.375455 | ACTTGTTCACATTTATGATCTCCCAC | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
3858 | 12023 | 6.065976 | TGTTCACATTTATGATCTCCCACT | 57.934 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
3859 | 12024 | 6.484288 | TGTTCACATTTATGATCTCCCACTT | 58.516 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3860 | 12025 | 6.599244 | TGTTCACATTTATGATCTCCCACTTC | 59.401 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3861 | 12026 | 6.566079 | TCACATTTATGATCTCCCACTTCT | 57.434 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
3862 | 12027 | 6.586344 | TCACATTTATGATCTCCCACTTCTC | 58.414 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3863 | 12028 | 6.385176 | TCACATTTATGATCTCCCACTTCTCT | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
3864 | 12029 | 7.052873 | CACATTTATGATCTCCCACTTCTCTT | 58.947 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
3865 | 12030 | 7.555554 | CACATTTATGATCTCCCACTTCTCTTT | 59.444 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3866 | 12031 | 7.555554 | ACATTTATGATCTCCCACTTCTCTTTG | 59.444 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
3867 | 12032 | 3.340814 | TGATCTCCCACTTCTCTTTGC | 57.659 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
3868 | 12033 | 2.909006 | TGATCTCCCACTTCTCTTTGCT | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
3869 | 12034 | 3.055530 | TGATCTCCCACTTCTCTTTGCTC | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
3870 | 12035 | 2.329267 | TCTCCCACTTCTCTTTGCTCA | 58.671 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
3871 | 12036 | 2.909006 | TCTCCCACTTCTCTTTGCTCAT | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3872 | 12037 | 3.328931 | TCTCCCACTTCTCTTTGCTCATT | 59.671 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
3873 | 12038 | 3.679389 | TCCCACTTCTCTTTGCTCATTC | 58.321 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
3874 | 12039 | 3.072915 | TCCCACTTCTCTTTGCTCATTCA | 59.927 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
3875 | 12040 | 4.015084 | CCCACTTCTCTTTGCTCATTCAT | 58.985 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
3876 | 12041 | 4.461781 | CCCACTTCTCTTTGCTCATTCATT | 59.538 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3877 | 12042 | 5.047519 | CCCACTTCTCTTTGCTCATTCATTT | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3878 | 12043 | 6.151648 | CCCACTTCTCTTTGCTCATTCATTTA | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3879 | 12044 | 7.309377 | CCCACTTCTCTTTGCTCATTCATTTAA | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
3880 | 12045 | 7.540055 | CCACTTCTCTTTGCTCATTCATTTAAC | 59.460 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
3881 | 12046 | 8.077991 | CACTTCTCTTTGCTCATTCATTTAACA | 58.922 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3882 | 12047 | 8.295288 | ACTTCTCTTTGCTCATTCATTTAACAG | 58.705 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3883 | 12048 | 7.149569 | TCTCTTTGCTCATTCATTTAACAGG | 57.850 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3884 | 12049 | 6.151648 | TCTCTTTGCTCATTCATTTAACAGGG | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 4.45 |
3885 | 12050 | 5.774690 | TCTTTGCTCATTCATTTAACAGGGT | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3886 | 12051 | 6.267471 | TCTTTGCTCATTCATTTAACAGGGTT | 59.733 | 34.615 | 0.00 | 0.00 | 0.00 | 4.11 |
3887 | 12052 | 6.418057 | TTGCTCATTCATTTAACAGGGTTT | 57.582 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
3888 | 12053 | 6.024552 | TGCTCATTCATTTAACAGGGTTTC | 57.975 | 37.500 | 0.00 | 0.00 | 0.00 | 2.78 |
3889 | 12054 | 5.774690 | TGCTCATTCATTTAACAGGGTTTCT | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3890 | 12055 | 6.071952 | TGCTCATTCATTTAACAGGGTTTCTC | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
3891 | 12056 | 6.151817 | GCTCATTCATTTAACAGGGTTTCTCT | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
3892 | 12057 | 7.627300 | GCTCATTCATTTAACAGGGTTTCTCTC | 60.627 | 40.741 | 0.00 | 0.00 | 0.00 | 3.20 |
3893 | 12058 | 7.461749 | TCATTCATTTAACAGGGTTTCTCTCT | 58.538 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
3894 | 12059 | 8.602424 | TCATTCATTTAACAGGGTTTCTCTCTA | 58.398 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3895 | 12060 | 9.401058 | CATTCATTTAACAGGGTTTCTCTCTAT | 57.599 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
3896 | 12061 | 9.620259 | ATTCATTTAACAGGGTTTCTCTCTATC | 57.380 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
3897 | 12062 | 7.565680 | TCATTTAACAGGGTTTCTCTCTATCC | 58.434 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3898 | 12063 | 6.945636 | TTTAACAGGGTTTCTCTCTATCCA | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
3899 | 12064 | 6.945636 | TTAACAGGGTTTCTCTCTATCCAA | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
3900 | 12065 | 7.510675 | TTAACAGGGTTTCTCTCTATCCAAT | 57.489 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3901 | 12066 | 8.618240 | TTAACAGGGTTTCTCTCTATCCAATA | 57.382 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
3902 | 12067 | 6.487299 | ACAGGGTTTCTCTCTATCCAATAC | 57.513 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
3903 | 12068 | 6.206042 | ACAGGGTTTCTCTCTATCCAATACT | 58.794 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3904 | 12069 | 6.098982 | ACAGGGTTTCTCTCTATCCAATACTG | 59.901 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
3905 | 12070 | 5.071115 | AGGGTTTCTCTCTATCCAATACTGC | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3906 | 12071 | 5.301555 | GGTTTCTCTCTATCCAATACTGCC | 58.698 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
3907 | 12072 | 5.071115 | GGTTTCTCTCTATCCAATACTGCCT | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 4.75 |
3908 | 12073 | 5.798125 | TTCTCTCTATCCAATACTGCCTG | 57.202 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
3909 | 12074 | 3.576118 | TCTCTCTATCCAATACTGCCTGC | 59.424 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
3910 | 12075 | 2.634940 | TCTCTATCCAATACTGCCTGCC | 59.365 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3911 | 12076 | 2.636893 | CTCTATCCAATACTGCCTGCCT | 59.363 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
3912 | 12077 | 3.834813 | CTCTATCCAATACTGCCTGCCTA | 59.165 | 47.826 | 0.00 | 0.00 | 0.00 | 3.93 |
3913 | 12078 | 4.429505 | TCTATCCAATACTGCCTGCCTAT | 58.570 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
3914 | 12079 | 4.846367 | TCTATCCAATACTGCCTGCCTATT | 59.154 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3915 | 12080 | 6.022958 | TCTATCCAATACTGCCTGCCTATTA | 58.977 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
3916 | 12081 | 4.623932 | TCCAATACTGCCTGCCTATTAG | 57.376 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
3917 | 12082 | 4.231273 | TCCAATACTGCCTGCCTATTAGA | 58.769 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
3918 | 12083 | 4.846367 | TCCAATACTGCCTGCCTATTAGAT | 59.154 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
3919 | 12084 | 5.310594 | TCCAATACTGCCTGCCTATTAGATT | 59.689 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3920 | 12085 | 6.500400 | TCCAATACTGCCTGCCTATTAGATTA | 59.500 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
3921 | 12086 | 7.017155 | TCCAATACTGCCTGCCTATTAGATTAA | 59.983 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
3922 | 12087 | 7.335422 | CCAATACTGCCTGCCTATTAGATTAAG | 59.665 | 40.741 | 0.00 | 0.00 | 0.00 | 1.85 |
3923 | 12088 | 7.798710 | ATACTGCCTGCCTATTAGATTAAGA | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3924 | 12089 | 6.694445 | ACTGCCTGCCTATTAGATTAAGAT | 57.306 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
3925 | 12090 | 7.798710 | ACTGCCTGCCTATTAGATTAAGATA | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3926 | 12091 | 8.207350 | ACTGCCTGCCTATTAGATTAAGATAA | 57.793 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
3927 | 12092 | 8.660435 | ACTGCCTGCCTATTAGATTAAGATAAA | 58.340 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3928 | 12093 | 8.848474 | TGCCTGCCTATTAGATTAAGATAAAC | 57.152 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
3929 | 12094 | 8.436778 | TGCCTGCCTATTAGATTAAGATAAACA | 58.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3941 | 12106 | 8.997323 | AGATTAAGATAAACAGAGTGCATATGC | 58.003 | 33.333 | 21.09 | 21.09 | 42.50 | 3.14 |
4045 | 12213 | 9.614792 | AGAATTAAGAAATTATTAGCCGTCACT | 57.385 | 29.630 | 0.00 | 0.00 | 35.41 | 3.41 |
4073 | 12241 | 7.600752 | GGAATCATCTACTAATCTGCACCTAAC | 59.399 | 40.741 | 0.00 | 0.00 | 0.00 | 2.34 |
4088 | 12256 | 2.171448 | ACCTAACCCAGCTGCAATAGAG | 59.829 | 50.000 | 8.66 | 6.53 | 0.00 | 2.43 |
4102 | 12270 | 3.626670 | GCAATAGAGAATGACAGCTGCTT | 59.373 | 43.478 | 15.27 | 4.94 | 0.00 | 3.91 |
4105 | 12273 | 2.424557 | AGAGAATGACAGCTGCTTGTG | 58.575 | 47.619 | 15.27 | 0.00 | 0.00 | 3.33 |
4110 | 12278 | 0.107263 | TGACAGCTGCTTGTGACCAA | 60.107 | 50.000 | 15.27 | 0.00 | 0.00 | 3.67 |
4131 | 12299 | 0.749818 | CTGGAGCTCTACCGCTGAGA | 60.750 | 60.000 | 14.64 | 0.00 | 41.08 | 3.27 |
4152 | 12320 | 2.093447 | ACCAGCAGGAACAGTACATAGC | 60.093 | 50.000 | 0.35 | 0.00 | 38.69 | 2.97 |
4159 | 12327 | 2.483889 | GGAACAGTACATAGCCTGGAGC | 60.484 | 54.545 | 0.00 | 0.00 | 44.25 | 4.70 |
4202 | 12370 | 3.391296 | GGTAGGTATCCAAGGATGAAGCA | 59.609 | 47.826 | 11.82 | 0.00 | 36.17 | 3.91 |
4205 | 12373 | 2.576615 | GTATCCAAGGATGAAGCACCC | 58.423 | 52.381 | 11.82 | 0.00 | 36.17 | 4.61 |
4207 | 12375 | 1.380380 | CCAAGGATGAAGCACCCCC | 60.380 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
4237 | 12406 | 2.485814 | GGTGATGTTGAGCTGAAGGTTC | 59.514 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
4239 | 12408 | 1.734465 | GATGTTGAGCTGAAGGTTCGG | 59.266 | 52.381 | 0.00 | 0.00 | 36.64 | 4.30 |
4249 | 12418 | 1.140052 | TGAAGGTTCGGTCTGCAGAAA | 59.860 | 47.619 | 20.19 | 6.61 | 31.08 | 2.52 |
4250 | 12419 | 2.224523 | TGAAGGTTCGGTCTGCAGAAAT | 60.225 | 45.455 | 20.19 | 0.00 | 31.08 | 2.17 |
4251 | 12420 | 2.100605 | AGGTTCGGTCTGCAGAAATC | 57.899 | 50.000 | 20.19 | 9.99 | 31.08 | 2.17 |
4252 | 12421 | 1.087501 | GGTTCGGTCTGCAGAAATCC | 58.912 | 55.000 | 20.19 | 14.87 | 31.08 | 3.01 |
4253 | 12422 | 1.610624 | GGTTCGGTCTGCAGAAATCCA | 60.611 | 52.381 | 20.19 | 4.13 | 31.08 | 3.41 |
4254 | 12423 | 2.359900 | GTTCGGTCTGCAGAAATCCAT | 58.640 | 47.619 | 20.19 | 0.00 | 31.08 | 3.41 |
4273 | 12442 | 1.388547 | TCCAGGAAATGTATTGCGGC | 58.611 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
4301 | 12470 | 2.038689 | AGCATGATATCACTGAGCCCAG | 59.961 | 50.000 | 7.78 | 0.00 | 45.76 | 4.45 |
4309 | 12478 | 3.978272 | CTGAGCCCAGTGTGCTTC | 58.022 | 61.111 | 0.36 | 0.00 | 39.69 | 3.86 |
4311 | 12480 | 0.673022 | CTGAGCCCAGTGTGCTTCTC | 60.673 | 60.000 | 0.36 | 0.00 | 39.69 | 2.87 |
4318 | 12487 | 1.069765 | AGTGTGCTTCTCACCACCG | 59.930 | 57.895 | 0.00 | 0.00 | 45.03 | 4.94 |
4335 | 12504 | 3.006110 | CCACCGGTGAGTGAACTTAGTTA | 59.994 | 47.826 | 36.07 | 0.00 | 40.34 | 2.24 |
4344 | 12516 | 3.435671 | AGTGAACTTAGTTAATGCGGCAC | 59.564 | 43.478 | 4.03 | 0.29 | 0.00 | 5.01 |
4351 | 12523 | 5.820423 | ACTTAGTTAATGCGGCACATATCAA | 59.180 | 36.000 | 4.03 | 0.00 | 38.34 | 2.57 |
4353 | 12525 | 4.199310 | AGTTAATGCGGCACATATCAAGT | 58.801 | 39.130 | 4.03 | 0.00 | 38.34 | 3.16 |
4354 | 12526 | 4.640201 | AGTTAATGCGGCACATATCAAGTT | 59.360 | 37.500 | 4.03 | 0.00 | 38.34 | 2.66 |
4355 | 12527 | 5.820423 | AGTTAATGCGGCACATATCAAGTTA | 59.180 | 36.000 | 4.03 | 0.00 | 38.34 | 2.24 |
4356 | 12528 | 4.818534 | AATGCGGCACATATCAAGTTAG | 57.181 | 40.909 | 4.03 | 0.00 | 38.34 | 2.34 |
4357 | 12529 | 3.535280 | TGCGGCACATATCAAGTTAGA | 57.465 | 42.857 | 0.00 | 0.00 | 0.00 | 2.10 |
4373 | 12545 | 4.828829 | AGTTAGATACAGTTTTGGGTCGG | 58.171 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
4380 | 12552 | 1.057851 | AGTTTTGGGTCGGGGACTGA | 61.058 | 55.000 | 0.00 | 0.00 | 44.24 | 3.41 |
4406 | 12578 | 8.270744 | AGGCTGAAGAAGATAACAACTGAATAT | 58.729 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
4437 | 12609 | 4.461781 | CACAGGGAGCTCATCTTTTTCATT | 59.538 | 41.667 | 17.19 | 0.00 | 0.00 | 2.57 |
4448 | 12620 | 9.448294 | GCTCATCTTTTTCATTGATGATAGAAC | 57.552 | 33.333 | 0.00 | 0.00 | 43.48 | 3.01 |
4461 | 12633 | 9.887629 | ATTGATGATAGAACCATAATAGCTCAG | 57.112 | 33.333 | 0.00 | 0.00 | 0.00 | 3.35 |
4476 | 12648 | 1.073923 | GCTCAGGGAAGAGAAAACCCA | 59.926 | 52.381 | 0.00 | 0.00 | 45.43 | 4.51 |
4479 | 12651 | 0.036875 | AGGGAAGAGAAAACCCAGCG | 59.963 | 55.000 | 0.00 | 0.00 | 45.43 | 5.18 |
4489 | 12661 | 5.365895 | AGAGAAAACCCAGCGTACCTAATAT | 59.634 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
4490 | 12662 | 6.552350 | AGAGAAAACCCAGCGTACCTAATATA | 59.448 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
4518 | 12692 | 6.885376 | GCCTAATAGTACTGCCATCTAGACTA | 59.115 | 42.308 | 5.39 | 0.00 | 0.00 | 2.59 |
4539 | 12713 | 6.003950 | ACTACAGGAAAACAACTACATGCAT | 58.996 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
4540 | 12714 | 5.125100 | ACAGGAAAACAACTACATGCATG | 57.875 | 39.130 | 25.09 | 25.09 | 0.00 | 4.06 |
4541 | 12715 | 3.922240 | CAGGAAAACAACTACATGCATGC | 59.078 | 43.478 | 26.53 | 11.82 | 0.00 | 4.06 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
55 | 57 | 3.256960 | GGTGAAGCCCCCTGACCA | 61.257 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
58 | 60 | 1.139498 | TGAATGGTGAAGCCCCCTGA | 61.139 | 55.000 | 0.00 | 0.00 | 36.04 | 3.86 |
108 | 111 | 3.711704 | AGGGAGTAAATGATGATCCGTGT | 59.288 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
370 | 373 | 5.751028 | GCCAGTCAAAGTATAGCTCTTAGTG | 59.249 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
398 | 404 | 7.043565 | GTCTTCACCGGTTTATAGGTTATTCA | 58.956 | 38.462 | 2.97 | 0.00 | 39.00 | 2.57 |
399 | 405 | 7.270779 | AGTCTTCACCGGTTTATAGGTTATTC | 58.729 | 38.462 | 2.97 | 0.00 | 39.00 | 1.75 |
400 | 406 | 7.191593 | AGTCTTCACCGGTTTATAGGTTATT | 57.808 | 36.000 | 2.97 | 0.00 | 39.00 | 1.40 |
501 | 507 | 1.772182 | AGTTCGCTCACTCGTTTCTG | 58.228 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
595 | 601 | 9.243105 | AGTGATACCACAGTTGCTTATATTTTT | 57.757 | 29.630 | 0.00 | 0.00 | 45.54 | 1.94 |
632 | 638 | 6.260050 | GTCCTTTGTATTGACAAGTGTCTGAA | 59.740 | 38.462 | 12.43 | 0.39 | 46.11 | 3.02 |
633 | 639 | 5.758296 | GTCCTTTGTATTGACAAGTGTCTGA | 59.242 | 40.000 | 12.43 | 2.38 | 46.11 | 3.27 |
807 | 815 | 2.236146 | ACTATTTCATGGGTGACAGCGA | 59.764 | 45.455 | 0.00 | 0.00 | 33.11 | 4.93 |
908 | 918 | 8.019656 | TCCTTCTATCTCATTTTGTACCCTAC | 57.980 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
918 | 928 | 9.352191 | CCATCTCATTTTCCTTCTATCTCATTT | 57.648 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
943 | 958 | 2.872858 | CCTTTCTAACTTAGCCGATGCC | 59.127 | 50.000 | 0.00 | 0.00 | 38.69 | 4.40 |
948 | 963 | 2.973945 | ACTGCCTTTCTAACTTAGCCG | 58.026 | 47.619 | 0.00 | 0.00 | 0.00 | 5.52 |
977 | 1000 | 2.943036 | TGGGAACTTGGTGGTTACTC | 57.057 | 50.000 | 0.00 | 0.00 | 31.19 | 2.59 |
998 | 1021 | 2.026822 | AGGACGGATGCTTCTTTCATGT | 60.027 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
1071 | 1094 | 0.176680 | CTGGCAACGCTATGGAGACT | 59.823 | 55.000 | 0.00 | 0.00 | 42.51 | 3.24 |
1072 | 1095 | 0.811616 | CCTGGCAACGCTATGGAGAC | 60.812 | 60.000 | 0.00 | 0.00 | 42.51 | 3.36 |
1095 | 1118 | 0.813610 | CGTTGCCACACTTGTCAGGA | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1117 | 1140 | 2.034268 | GCCAAATGGGTAGGGGATTGG | 61.034 | 57.143 | 0.90 | 0.00 | 40.16 | 3.16 |
1131 | 1154 | 1.144496 | GCCATTGCCGATGCCAAAT | 59.856 | 52.632 | 0.00 | 0.00 | 36.33 | 2.32 |
1333 | 1356 | 0.949105 | CCGCTGGTGTAGTTGTCCAC | 60.949 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1447 | 1474 | 1.827789 | GGTCTGGGTTGCTGTGCAA | 60.828 | 57.895 | 0.45 | 0.45 | 46.80 | 4.08 |
1476 | 1503 | 1.045911 | GGCAGTAGGAGTAGCAGCCT | 61.046 | 60.000 | 0.00 | 0.00 | 37.67 | 4.58 |
1555 | 1583 | 0.611896 | GTGAGGTTTGGGGTGATGGG | 60.612 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1836 | 1865 | 3.762247 | CCTGGGCCATTGGTTGCG | 61.762 | 66.667 | 6.72 | 0.00 | 0.00 | 4.85 |
1952 | 1989 | 4.757149 | GTGACAGTTGCTTATCCTGAGTTT | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
1955 | 1992 | 3.931468 | CAGTGACAGTTGCTTATCCTGAG | 59.069 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
1980 | 2019 | 6.922957 | GGAACAAAAATCTACTGAAACATGCA | 59.077 | 34.615 | 0.00 | 0.00 | 0.00 | 3.96 |
2036 | 2110 | 8.088365 | AGCAAACCAAAACTCAAAATATAGTCC | 58.912 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2037 | 2111 | 9.476202 | AAGCAAACCAAAACTCAAAATATAGTC | 57.524 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
2041 | 2115 | 8.720562 | GCATAAGCAAACCAAAACTCAAAATAT | 58.279 | 29.630 | 0.00 | 0.00 | 41.58 | 1.28 |
2048 | 2122 | 4.257267 | AGGCATAAGCAAACCAAAACTC | 57.743 | 40.909 | 0.00 | 0.00 | 44.61 | 3.01 |
2266 | 2340 | 2.435372 | AACCACCTGTTCAGCTTGAA | 57.565 | 45.000 | 0.00 | 0.00 | 33.32 | 2.69 |
2313 | 2388 | 8.635765 | AAATGCACCTTAGATAAACAAAGAGA | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 3.10 |
2357 | 2438 | 5.047590 | TGCAGAATGATTGTTGAGATGCTTT | 60.048 | 36.000 | 0.00 | 0.00 | 39.69 | 3.51 |
2366 | 2447 | 1.822990 | AGGCCTGCAGAATGATTGTTG | 59.177 | 47.619 | 17.39 | 0.00 | 39.69 | 3.33 |
2440 | 2528 | 1.956477 | TCCTGTGCTTTCTTCTTTGCC | 59.044 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
2441 | 2529 | 3.551659 | CCTTCCTGTGCTTTCTTCTTTGC | 60.552 | 47.826 | 0.00 | 0.00 | 0.00 | 3.68 |
2606 | 2700 | 0.396139 | CCATTCCATGACCCCCACAG | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2643 | 2737 | 4.508461 | TGGCAACTTCTTTGTCATCATG | 57.492 | 40.909 | 0.00 | 0.00 | 45.14 | 3.07 |
2792 | 5932 | 6.923508 | TCGATATGAACTCATACACCAACATC | 59.076 | 38.462 | 1.53 | 0.00 | 41.15 | 3.06 |
3029 | 6175 | 6.119240 | TCATCTTTATCTATGGGCTTCAGG | 57.881 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
3242 | 11231 | 2.704572 | CGGAGCTTCTTCTGGTGAAAT | 58.295 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
3494 | 11484 | 4.574892 | TCGTGCTCTGGTATTTCATTTCA | 58.425 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3534 | 11524 | 6.983906 | TCATCTTGCAGGATCTACATCTAA | 57.016 | 37.500 | 8.60 | 0.00 | 0.00 | 2.10 |
3547 | 11537 | 4.895224 | ACATGCAGTAATCATCTTGCAG | 57.105 | 40.909 | 4.29 | 0.12 | 35.70 | 4.41 |
3590 | 11580 | 4.000988 | ACAAGAAACTACGCCCACTATTG | 58.999 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
3593 | 11583 | 2.629137 | TCACAAGAAACTACGCCCACTA | 59.371 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
3671 | 11835 | 5.234757 | CAGAGCTGTCTTAGAAATCATGAGC | 59.765 | 44.000 | 0.09 | 0.00 | 0.00 | 4.26 |
3776 | 11941 | 5.376625 | ACCAGTGAGTAAAATTGAAGCTGA | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
3816 | 11981 | 6.366332 | GTGAACAAGTAGACCTCAACATGTAG | 59.634 | 42.308 | 0.00 | 0.00 | 28.29 | 2.74 |
3818 | 11983 | 5.057149 | GTGAACAAGTAGACCTCAACATGT | 58.943 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
3825 | 11990 | 8.723942 | ATCATAAATGTGAACAAGTAGACCTC | 57.276 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
3826 | 11991 | 8.543774 | AGATCATAAATGTGAACAAGTAGACCT | 58.456 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
3827 | 11992 | 8.723942 | AGATCATAAATGTGAACAAGTAGACC | 57.276 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
3828 | 11993 | 8.821894 | GGAGATCATAAATGTGAACAAGTAGAC | 58.178 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3829 | 11994 | 7.987458 | GGGAGATCATAAATGTGAACAAGTAGA | 59.013 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3830 | 11995 | 7.770433 | TGGGAGATCATAAATGTGAACAAGTAG | 59.230 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3831 | 11996 | 7.552687 | GTGGGAGATCATAAATGTGAACAAGTA | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3832 | 11997 | 6.375455 | GTGGGAGATCATAAATGTGAACAAGT | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3833 | 11998 | 6.600822 | AGTGGGAGATCATAAATGTGAACAAG | 59.399 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3834 | 11999 | 6.484288 | AGTGGGAGATCATAAATGTGAACAA | 58.516 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3835 | 12000 | 6.065976 | AGTGGGAGATCATAAATGTGAACA | 57.934 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
3836 | 12001 | 6.825721 | AGAAGTGGGAGATCATAAATGTGAAC | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
3837 | 12002 | 6.962182 | AGAAGTGGGAGATCATAAATGTGAA | 58.038 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3838 | 12003 | 6.385176 | AGAGAAGTGGGAGATCATAAATGTGA | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 3.58 |
3839 | 12004 | 6.590068 | AGAGAAGTGGGAGATCATAAATGTG | 58.410 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3840 | 12005 | 6.821616 | AGAGAAGTGGGAGATCATAAATGT | 57.178 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
3841 | 12006 | 7.468357 | GCAAAGAGAAGTGGGAGATCATAAATG | 60.468 | 40.741 | 0.00 | 0.00 | 0.00 | 2.32 |
3842 | 12007 | 6.545298 | GCAAAGAGAAGTGGGAGATCATAAAT | 59.455 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3843 | 12008 | 5.882557 | GCAAAGAGAAGTGGGAGATCATAAA | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3844 | 12009 | 5.190528 | AGCAAAGAGAAGTGGGAGATCATAA | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3845 | 12010 | 4.718774 | AGCAAAGAGAAGTGGGAGATCATA | 59.281 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
3846 | 12011 | 3.522750 | AGCAAAGAGAAGTGGGAGATCAT | 59.477 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
3847 | 12012 | 2.909006 | AGCAAAGAGAAGTGGGAGATCA | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
3848 | 12013 | 3.055530 | TGAGCAAAGAGAAGTGGGAGATC | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
3849 | 12014 | 2.909006 | TGAGCAAAGAGAAGTGGGAGAT | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
3850 | 12015 | 2.329267 | TGAGCAAAGAGAAGTGGGAGA | 58.671 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
3851 | 12016 | 2.847327 | TGAGCAAAGAGAAGTGGGAG | 57.153 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3852 | 12017 | 3.072915 | TGAATGAGCAAAGAGAAGTGGGA | 59.927 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
3853 | 12018 | 3.415212 | TGAATGAGCAAAGAGAAGTGGG | 58.585 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
3854 | 12019 | 5.640189 | AATGAATGAGCAAAGAGAAGTGG | 57.360 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
3855 | 12020 | 8.077991 | TGTTAAATGAATGAGCAAAGAGAAGTG | 58.922 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3856 | 12021 | 8.169977 | TGTTAAATGAATGAGCAAAGAGAAGT | 57.830 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
3857 | 12022 | 7.754027 | CCTGTTAAATGAATGAGCAAAGAGAAG | 59.246 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
3858 | 12023 | 7.309377 | CCCTGTTAAATGAATGAGCAAAGAGAA | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
3859 | 12024 | 6.151648 | CCCTGTTAAATGAATGAGCAAAGAGA | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
3860 | 12025 | 6.071728 | ACCCTGTTAAATGAATGAGCAAAGAG | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
3861 | 12026 | 5.774690 | ACCCTGTTAAATGAATGAGCAAAGA | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3862 | 12027 | 6.029346 | ACCCTGTTAAATGAATGAGCAAAG | 57.971 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
3863 | 12028 | 6.418057 | AACCCTGTTAAATGAATGAGCAAA | 57.582 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
3864 | 12029 | 6.267471 | AGAAACCCTGTTAAATGAATGAGCAA | 59.733 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
3865 | 12030 | 5.774690 | AGAAACCCTGTTAAATGAATGAGCA | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3866 | 12031 | 6.151817 | AGAGAAACCCTGTTAAATGAATGAGC | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
3867 | 12032 | 7.609532 | AGAGAGAAACCCTGTTAAATGAATGAG | 59.390 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
3868 | 12033 | 7.461749 | AGAGAGAAACCCTGTTAAATGAATGA | 58.538 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3869 | 12034 | 7.693969 | AGAGAGAAACCCTGTTAAATGAATG | 57.306 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3870 | 12035 | 9.620259 | GATAGAGAGAAACCCTGTTAAATGAAT | 57.380 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3871 | 12036 | 8.047310 | GGATAGAGAGAAACCCTGTTAAATGAA | 58.953 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3872 | 12037 | 7.182026 | TGGATAGAGAGAAACCCTGTTAAATGA | 59.818 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3873 | 12038 | 7.338710 | TGGATAGAGAGAAACCCTGTTAAATG | 58.661 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
3874 | 12039 | 7.510675 | TGGATAGAGAGAAACCCTGTTAAAT | 57.489 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3875 | 12040 | 6.945636 | TGGATAGAGAGAAACCCTGTTAAA | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
3876 | 12041 | 6.945636 | TTGGATAGAGAGAAACCCTGTTAA | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
3877 | 12042 | 7.844779 | AGTATTGGATAGAGAGAAACCCTGTTA | 59.155 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
3878 | 12043 | 6.674419 | AGTATTGGATAGAGAGAAACCCTGTT | 59.326 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3879 | 12044 | 6.098982 | CAGTATTGGATAGAGAGAAACCCTGT | 59.901 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
3880 | 12045 | 6.520272 | CAGTATTGGATAGAGAGAAACCCTG | 58.480 | 44.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3881 | 12046 | 5.071115 | GCAGTATTGGATAGAGAGAAACCCT | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3882 | 12047 | 5.301555 | GCAGTATTGGATAGAGAGAAACCC | 58.698 | 45.833 | 0.00 | 0.00 | 0.00 | 4.11 |
3883 | 12048 | 5.071115 | AGGCAGTATTGGATAGAGAGAAACC | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3884 | 12049 | 5.988561 | CAGGCAGTATTGGATAGAGAGAAAC | 59.011 | 44.000 | 0.00 | 0.00 | 0.00 | 2.78 |
3885 | 12050 | 5.453903 | GCAGGCAGTATTGGATAGAGAGAAA | 60.454 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3886 | 12051 | 4.039730 | GCAGGCAGTATTGGATAGAGAGAA | 59.960 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
3887 | 12052 | 3.576118 | GCAGGCAGTATTGGATAGAGAGA | 59.424 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
3888 | 12053 | 3.306641 | GGCAGGCAGTATTGGATAGAGAG | 60.307 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
3889 | 12054 | 2.634940 | GGCAGGCAGTATTGGATAGAGA | 59.365 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3890 | 12055 | 2.636893 | AGGCAGGCAGTATTGGATAGAG | 59.363 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3891 | 12056 | 2.694397 | AGGCAGGCAGTATTGGATAGA | 58.306 | 47.619 | 0.00 | 0.00 | 0.00 | 1.98 |
3892 | 12057 | 4.833478 | ATAGGCAGGCAGTATTGGATAG | 57.167 | 45.455 | 0.00 | 0.00 | 0.00 | 2.08 |
3893 | 12058 | 6.022958 | TCTAATAGGCAGGCAGTATTGGATA | 58.977 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3894 | 12059 | 4.846367 | TCTAATAGGCAGGCAGTATTGGAT | 59.154 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3895 | 12060 | 4.231273 | TCTAATAGGCAGGCAGTATTGGA | 58.769 | 43.478 | 0.00 | 2.96 | 0.00 | 3.53 |
3896 | 12061 | 4.623932 | TCTAATAGGCAGGCAGTATTGG | 57.376 | 45.455 | 0.00 | 0.72 | 0.00 | 3.16 |
3897 | 12062 | 8.097038 | TCTTAATCTAATAGGCAGGCAGTATTG | 58.903 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
3898 | 12063 | 8.207350 | TCTTAATCTAATAGGCAGGCAGTATT | 57.793 | 34.615 | 0.00 | 0.86 | 0.00 | 1.89 |
3899 | 12064 | 7.798710 | TCTTAATCTAATAGGCAGGCAGTAT | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3900 | 12065 | 7.798710 | ATCTTAATCTAATAGGCAGGCAGTA | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3901 | 12066 | 6.694445 | ATCTTAATCTAATAGGCAGGCAGT | 57.306 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
3902 | 12067 | 8.940952 | GTTTATCTTAATCTAATAGGCAGGCAG | 58.059 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
3903 | 12068 | 8.436778 | TGTTTATCTTAATCTAATAGGCAGGCA | 58.563 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
3904 | 12069 | 8.848474 | TGTTTATCTTAATCTAATAGGCAGGC | 57.152 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
3915 | 12080 | 8.997323 | GCATATGCACTCTGTTTATCTTAATCT | 58.003 | 33.333 | 22.84 | 0.00 | 41.59 | 2.40 |
3916 | 12081 | 8.997323 | AGCATATGCACTCTGTTTATCTTAATC | 58.003 | 33.333 | 28.62 | 0.00 | 45.16 | 1.75 |
3917 | 12082 | 8.915057 | AGCATATGCACTCTGTTTATCTTAAT | 57.085 | 30.769 | 28.62 | 0.00 | 45.16 | 1.40 |
3918 | 12083 | 8.737168 | AAGCATATGCACTCTGTTTATCTTAA | 57.263 | 30.769 | 28.62 | 0.00 | 45.16 | 1.85 |
3919 | 12084 | 8.737168 | AAAGCATATGCACTCTGTTTATCTTA | 57.263 | 30.769 | 28.62 | 0.00 | 45.16 | 2.10 |
3920 | 12085 | 7.636150 | AAAGCATATGCACTCTGTTTATCTT | 57.364 | 32.000 | 28.62 | 7.26 | 45.16 | 2.40 |
3921 | 12086 | 8.737168 | TTAAAGCATATGCACTCTGTTTATCT | 57.263 | 30.769 | 28.62 | 0.81 | 45.16 | 1.98 |
3922 | 12087 | 8.072567 | CCTTAAAGCATATGCACTCTGTTTATC | 58.927 | 37.037 | 28.62 | 0.00 | 45.16 | 1.75 |
3923 | 12088 | 7.469181 | GCCTTAAAGCATATGCACTCTGTTTAT | 60.469 | 37.037 | 28.62 | 1.58 | 45.16 | 1.40 |
3924 | 12089 | 6.183360 | GCCTTAAAGCATATGCACTCTGTTTA | 60.183 | 38.462 | 28.62 | 18.89 | 45.16 | 2.01 |
3925 | 12090 | 5.393461 | GCCTTAAAGCATATGCACTCTGTTT | 60.393 | 40.000 | 28.62 | 19.83 | 45.16 | 2.83 |
3926 | 12091 | 4.096984 | GCCTTAAAGCATATGCACTCTGTT | 59.903 | 41.667 | 28.62 | 10.87 | 45.16 | 3.16 |
3927 | 12092 | 3.629398 | GCCTTAAAGCATATGCACTCTGT | 59.371 | 43.478 | 28.62 | 6.53 | 45.16 | 3.41 |
3928 | 12093 | 3.628942 | TGCCTTAAAGCATATGCACTCTG | 59.371 | 43.478 | 28.62 | 14.98 | 45.16 | 3.35 |
3929 | 12094 | 3.889815 | TGCCTTAAAGCATATGCACTCT | 58.110 | 40.909 | 28.62 | 12.35 | 45.16 | 3.24 |
3941 | 12106 | 3.891422 | TCATGCCCAAATGCCTTAAAG | 57.109 | 42.857 | 0.00 | 0.00 | 0.00 | 1.85 |
4040 | 12208 | 7.081349 | CAGATTAGTAGATGATTCCGAGTGAC | 58.919 | 42.308 | 0.00 | 0.00 | 0.00 | 3.67 |
4041 | 12209 | 6.294231 | GCAGATTAGTAGATGATTCCGAGTGA | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 3.41 |
4044 | 12212 | 5.861251 | GTGCAGATTAGTAGATGATTCCGAG | 59.139 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4045 | 12213 | 5.279006 | GGTGCAGATTAGTAGATGATTCCGA | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 4.55 |
4048 | 12216 | 7.600752 | GGTTAGGTGCAGATTAGTAGATGATTC | 59.399 | 40.741 | 0.00 | 0.00 | 0.00 | 2.52 |
4057 | 12225 | 2.092914 | GCTGGGTTAGGTGCAGATTAGT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4060 | 12228 | 0.995024 | AGCTGGGTTAGGTGCAGATT | 59.005 | 50.000 | 0.00 | 0.00 | 35.38 | 2.40 |
4073 | 12241 | 2.877168 | GTCATTCTCTATTGCAGCTGGG | 59.123 | 50.000 | 17.12 | 0.00 | 0.00 | 4.45 |
4088 | 12256 | 1.198637 | GGTCACAAGCAGCTGTCATTC | 59.801 | 52.381 | 16.64 | 0.00 | 0.00 | 2.67 |
4131 | 12299 | 2.093447 | GCTATGTACTGTTCCTGCTGGT | 60.093 | 50.000 | 9.73 | 0.00 | 34.23 | 4.00 |
4187 | 12355 | 0.259938 | GGGGTGCTTCATCCTTGGAT | 59.740 | 55.000 | 0.00 | 0.00 | 34.53 | 3.41 |
4202 | 12370 | 3.252284 | CACCAGTGAGCAGGGGGT | 61.252 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
4205 | 12373 | 0.037303 | AACATCACCAGTGAGCAGGG | 59.963 | 55.000 | 6.63 | 0.00 | 43.61 | 4.45 |
4207 | 12375 | 2.074576 | CTCAACATCACCAGTGAGCAG | 58.925 | 52.381 | 6.63 | 1.98 | 43.61 | 4.24 |
4214 | 12383 | 2.082231 | CCTTCAGCTCAACATCACCAG | 58.918 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4237 | 12406 | 1.303309 | GGATGGATTTCTGCAGACCG | 58.697 | 55.000 | 18.03 | 0.00 | 0.00 | 4.79 |
4239 | 12408 | 2.092753 | TCCTGGATGGATTTCTGCAGAC | 60.093 | 50.000 | 18.03 | 5.40 | 40.56 | 3.51 |
4249 | 12418 | 3.822735 | CGCAATACATTTCCTGGATGGAT | 59.177 | 43.478 | 0.00 | 0.00 | 45.68 | 3.41 |
4250 | 12419 | 3.213506 | CGCAATACATTTCCTGGATGGA | 58.786 | 45.455 | 0.00 | 0.00 | 44.51 | 3.41 |
4251 | 12420 | 2.294233 | CCGCAATACATTTCCTGGATGG | 59.706 | 50.000 | 0.00 | 0.00 | 37.10 | 3.51 |
4252 | 12421 | 2.287788 | GCCGCAATACATTTCCTGGATG | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4253 | 12422 | 1.956477 | GCCGCAATACATTTCCTGGAT | 59.044 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
4254 | 12423 | 1.388547 | GCCGCAATACATTTCCTGGA | 58.611 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4270 | 12439 | 1.808945 | GATATCATGCTTTCTGGGCCG | 59.191 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
4273 | 12442 | 4.711399 | TCAGTGATATCATGCTTTCTGGG | 58.289 | 43.478 | 9.02 | 0.00 | 0.00 | 4.45 |
4318 | 12487 | 4.092968 | CCGCATTAACTAAGTTCACTCACC | 59.907 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
4321 | 12490 | 3.682858 | TGCCGCATTAACTAAGTTCACTC | 59.317 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4326 | 12495 | 5.820423 | TGATATGTGCCGCATTAACTAAGTT | 59.180 | 36.000 | 0.00 | 0.00 | 38.94 | 2.66 |
4335 | 12504 | 4.450976 | TCTAACTTGATATGTGCCGCATT | 58.549 | 39.130 | 0.00 | 0.00 | 38.94 | 3.56 |
4344 | 12516 | 9.396022 | ACCCAAAACTGTATCTAACTTGATATG | 57.604 | 33.333 | 0.00 | 0.00 | 32.39 | 1.78 |
4351 | 12523 | 4.323257 | CCCGACCCAAAACTGTATCTAACT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
4353 | 12525 | 3.054948 | CCCCGACCCAAAACTGTATCTAA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
4354 | 12526 | 2.502538 | CCCCGACCCAAAACTGTATCTA | 59.497 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4355 | 12527 | 1.280998 | CCCCGACCCAAAACTGTATCT | 59.719 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
4356 | 12528 | 1.279846 | TCCCCGACCCAAAACTGTATC | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
4357 | 12529 | 1.003928 | GTCCCCGACCCAAAACTGTAT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
4373 | 12545 | 1.270907 | TCTTCTTCAGCCTCAGTCCC | 58.729 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4380 | 12552 | 5.489792 | TCAGTTGTTATCTTCTTCAGCCT | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 4.58 |
4406 | 12578 | 4.718774 | AGATGAGCTCCCTGTGAAGATTTA | 59.281 | 41.667 | 12.15 | 0.00 | 0.00 | 1.40 |
4437 | 12609 | 7.093156 | CCCTGAGCTATTATGGTTCTATCATCA | 60.093 | 40.741 | 0.00 | 0.00 | 0.00 | 3.07 |
4448 | 12620 | 5.815233 | TTCTCTTCCCTGAGCTATTATGG | 57.185 | 43.478 | 0.00 | 0.00 | 34.29 | 2.74 |
4451 | 12623 | 5.104485 | GGGTTTTCTCTTCCCTGAGCTATTA | 60.104 | 44.000 | 0.00 | 0.00 | 38.29 | 0.98 |
4456 | 12628 | 1.073923 | TGGGTTTTCTCTTCCCTGAGC | 59.926 | 52.381 | 0.00 | 0.00 | 41.58 | 4.26 |
4461 | 12633 | 0.250770 | ACGCTGGGTTTTCTCTTCCC | 60.251 | 55.000 | 0.00 | 0.00 | 41.41 | 3.97 |
4476 | 12648 | 2.444421 | AGGCGCTATATTAGGTACGCT | 58.556 | 47.619 | 7.64 | 0.00 | 45.24 | 5.07 |
4479 | 12651 | 9.336171 | AGTACTATTAGGCGCTATATTAGGTAC | 57.664 | 37.037 | 7.64 | 11.28 | 0.00 | 3.34 |
4489 | 12661 | 2.589720 | TGGCAGTACTATTAGGCGCTA | 58.410 | 47.619 | 7.64 | 0.00 | 0.00 | 4.26 |
4490 | 12662 | 1.410004 | TGGCAGTACTATTAGGCGCT | 58.590 | 50.000 | 7.64 | 0.00 | 0.00 | 5.92 |
4518 | 12692 | 4.559300 | GCATGCATGTAGTTGTTTTCCTGT | 60.559 | 41.667 | 26.79 | 0.00 | 0.00 | 4.00 |
4539 | 12713 | 4.707584 | CCTGGGTAGGCTAGAGCA | 57.292 | 61.111 | 3.54 | 0.00 | 44.36 | 4.26 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.