Multiple sequence alignment - TraesCS5B01G034800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G034800 chr5B 100.000 5610 0 0 1 5610 37818103 37812494 0.000000e+00 10360.0
1 TraesCS5B01G034800 chr5B 91.418 2983 163 44 1442 4360 38516702 38519655 0.000000e+00 4004.0
2 TraesCS5B01G034800 chr5B 86.695 699 62 15 4363 5040 38519702 38520390 0.000000e+00 747.0
3 TraesCS5B01G034800 chr5B 83.894 832 72 20 202 997 38515330 38516135 0.000000e+00 737.0
4 TraesCS5B01G034800 chr5B 89.939 328 25 4 1073 1399 38516172 38516492 3.130000e-112 416.0
5 TraesCS5B01G034800 chr5B 93.689 206 12 1 1 205 549538062 549538267 1.960000e-79 307.0
6 TraesCS5B01G034800 chr5A 88.889 3726 250 81 678 4313 31137983 31134332 0.000000e+00 4436.0
7 TraesCS5B01G034800 chr5A 80.625 1120 118 44 2914 4007 456525399 456524353 0.000000e+00 774.0
8 TraesCS5B01G034800 chr5A 89.011 637 39 10 4367 4975 31133689 31133056 0.000000e+00 760.0
9 TraesCS5B01G034800 chr5A 90.366 519 44 2 1358 1871 31286368 31286885 0.000000e+00 676.0
10 TraesCS5B01G034800 chr5A 84.835 666 76 14 2683 3344 31291985 31292629 0.000000e+00 647.0
11 TraesCS5B01G034800 chr5A 93.004 243 10 4 1125 1366 31285949 31286185 1.160000e-91 348.0
12 TraesCS5B01G034800 chr5A 84.196 367 33 14 741 1092 31285594 31285950 3.240000e-87 333.0
13 TraesCS5B01G034800 chr5A 93.204 206 13 1 1 205 8487219 8487014 9.130000e-78 302.0
14 TraesCS5B01G034800 chr5A 87.023 262 27 6 4371 4626 31293448 31293708 7.110000e-74 289.0
15 TraesCS5B01G034800 chr5A 78.974 390 63 16 273 655 475486027 475485650 1.210000e-61 248.0
16 TraesCS5B01G034800 chr5A 84.674 261 16 8 3343 3603 31292711 31292947 7.260000e-59 239.0
17 TraesCS5B01G034800 chr7B 85.827 1263 102 34 3103 4315 661740151 661741386 0.000000e+00 1269.0
18 TraesCS5B01G034800 chr7B 87.973 740 71 7 1137 1870 723874526 723873799 0.000000e+00 857.0
19 TraesCS5B01G034800 chr7B 81.261 1110 118 36 3266 4319 581502776 581503851 0.000000e+00 815.0
20 TraesCS5B01G034800 chr7B 86.201 616 55 4 2404 3011 723873774 723873181 1.700000e-179 640.0
21 TraesCS5B01G034800 chr7B 78.544 1030 114 48 2907 3912 641253209 641254155 3.770000e-161 579.0
22 TraesCS5B01G034800 chr7B 80.526 837 73 37 2943 3761 547261589 547262353 1.360000e-155 560.0
23 TraesCS5B01G034800 chr7A 84.409 1302 102 44 3103 4315 674105633 674104344 0.000000e+00 1186.0
24 TraesCS5B01G034800 chr7A 85.297 891 80 22 3294 4160 620532504 620533367 0.000000e+00 872.0
25 TraesCS5B01G034800 chr7A 90.744 551 33 8 5061 5610 724655915 724656448 0.000000e+00 719.0
26 TraesCS5B01G034800 chr7A 89.446 578 32 10 5058 5610 609334871 609334298 0.000000e+00 702.0
27 TraesCS5B01G034800 chr7A 91.628 215 16 2 1 214 320511415 320511628 4.250000e-76 296.0
28 TraesCS5B01G034800 chr7A 78.039 255 36 11 2166 2405 645446720 645446969 5.860000e-30 143.0
29 TraesCS5B01G034800 chr7A 76.250 240 41 6 2179 2404 423403654 423403417 4.590000e-21 113.0
30 TraesCS5B01G034800 chr7D 84.659 1056 97 33 3260 4264 538908366 538909407 0.000000e+00 992.0
31 TraesCS5B01G034800 chr7D 90.278 576 29 10 5059 5610 53315605 53316177 0.000000e+00 728.0
32 TraesCS5B01G034800 chr7D 84.397 423 41 7 202 603 270729881 270730299 5.270000e-105 392.0
33 TraesCS5B01G034800 chr7D 73.832 428 76 19 2003 2403 204727094 204726676 2.730000e-28 137.0
34 TraesCS5B01G034800 chr2B 84.267 928 89 34 3431 4318 355387732 355386822 0.000000e+00 852.0
35 TraesCS5B01G034800 chr2B 85.552 616 59 6 2404 3011 652705841 652706434 7.990000e-173 617.0
36 TraesCS5B01G034800 chr2B 88.646 458 37 6 1137 1587 652705143 652705592 1.370000e-150 544.0
37 TraesCS5B01G034800 chr2B 79.814 862 78 37 2914 3755 34567870 34568655 1.780000e-149 540.0
38 TraesCS5B01G034800 chr2B 88.453 459 37 9 1137 1587 134845587 134846037 1.780000e-149 540.0
39 TraesCS5B01G034800 chr2B 88.154 363 35 2 2404 2758 134846286 134846648 5.190000e-115 425.0
40 TraesCS5B01G034800 chr2B 84.343 396 51 10 273 664 774688048 774688436 1.480000e-100 377.0
41 TraesCS5B01G034800 chr2B 89.787 235 24 0 1637 1871 134846028 134846262 9.130000e-78 302.0
42 TraesCS5B01G034800 chr2B 81.201 383 39 15 2717 3083 355388354 355387989 1.540000e-70 278.0
43 TraesCS5B01G034800 chr2B 83.268 257 21 6 2755 3011 134858864 134859098 3.400000e-52 217.0
44 TraesCS5B01G034800 chr2D 84.462 901 90 30 3427 4289 293860027 293860915 0.000000e+00 843.0
45 TraesCS5B01G034800 chr2D 80.679 383 41 15 2717 3083 293859412 293859777 3.330000e-67 267.0
46 TraesCS5B01G034800 chr2D 80.838 167 25 6 1993 2155 365418846 365418683 2.120000e-24 124.0
47 TraesCS5B01G034800 chr2A 84.351 901 91 28 3427 4289 360870411 360871299 0.000000e+00 837.0
48 TraesCS5B01G034800 chr2A 80.157 383 43 15 2717 3083 360869796 360870161 7.210000e-64 255.0
49 TraesCS5B01G034800 chr6A 84.091 836 67 27 3340 4131 616800268 616799455 0.000000e+00 747.0
50 TraesCS5B01G034800 chr6A 80.336 834 93 34 3103 3912 139050291 139049505 2.930000e-157 566.0
51 TraesCS5B01G034800 chr6A 94.089 203 12 0 2 204 56469575 56469373 5.460000e-80 309.0
52 TraesCS5B01G034800 chr3D 90.210 572 32 9 5059 5609 50061674 50061106 0.000000e+00 725.0
53 TraesCS5B01G034800 chr3D 88.889 576 35 11 5059 5610 345247509 345248079 0.000000e+00 682.0
54 TraesCS5B01G034800 chr3D 88.042 577 39 12 5059 5610 584951023 584950452 0.000000e+00 656.0
55 TraesCS5B01G034800 chr3D 76.471 255 39 13 2166 2405 51958283 51958531 9.870000e-23 119.0
56 TraesCS5B01G034800 chr6D 90.070 574 29 11 5062 5610 13675194 13674624 0.000000e+00 719.0
57 TraesCS5B01G034800 chr6D 88.715 576 37 10 5059 5610 19493813 19493242 0.000000e+00 678.0
58 TraesCS5B01G034800 chr6D 80.175 343 27 20 3839 4163 473107829 473108148 9.460000e-53 219.0
59 TraesCS5B01G034800 chrUn 89.583 576 33 10 5059 5610 95815243 95815815 0.000000e+00 706.0
60 TraesCS5B01G034800 chrUn 88.715 576 37 11 5059 5610 70553188 70552617 0.000000e+00 678.0
61 TraesCS5B01G034800 chrUn 84.504 413 45 9 273 682 124909094 124908698 1.890000e-104 390.0
62 TraesCS5B01G034800 chr1A 88.562 577 38 11 5059 5610 22062755 22062182 0.000000e+00 675.0
63 TraesCS5B01G034800 chr1A 82.818 809 76 29 3522 4293 77098183 77098965 0.000000e+00 665.0
64 TraesCS5B01G034800 chr4D 87.570 539 39 14 5099 5610 436907568 436908105 2.890000e-167 599.0
65 TraesCS5B01G034800 chr4D 84.110 365 51 7 273 634 397367013 397366653 4.160000e-91 346.0
66 TraesCS5B01G034800 chr4A 80.702 627 69 23 3307 3912 716526907 716527502 1.860000e-119 440.0
67 TraesCS5B01G034800 chr4B 85.680 412 47 10 273 682 668881005 668881406 1.870000e-114 424.0
68 TraesCS5B01G034800 chr4B 93.596 203 13 0 1 203 657569353 657569555 2.540000e-78 303.0
69 TraesCS5B01G034800 chr4B 93.564 202 13 0 1 202 191006683 191006482 9.130000e-78 302.0
70 TraesCS5B01G034800 chr1B 84.466 412 54 9 273 682 602579116 602578713 1.130000e-106 398.0
71 TraesCS5B01G034800 chr1B 74.419 258 44 12 2166 2408 216050156 216049906 2.150000e-14 91.6
72 TraesCS5B01G034800 chr5D 82.129 498 51 14 202 678 275549194 275548714 5.270000e-105 392.0
73 TraesCS5B01G034800 chr5D 84.901 404 42 12 281 682 275563824 275563438 1.890000e-104 390.0
74 TraesCS5B01G034800 chr6B 80.309 518 54 20 3406 3905 75673829 75673342 1.160000e-91 348.0
75 TraesCS5B01G034800 chr3A 93.596 203 13 0 1 203 726190677 726190475 2.540000e-78 303.0
76 TraesCS5B01G034800 chr3A 92.823 209 14 1 1 209 41656901 41656694 9.130000e-78 302.0
77 TraesCS5B01G034800 chr3B 92.381 210 16 0 1 210 829445429 829445638 3.290000e-77 300.0
78 TraesCS5B01G034800 chr1D 80.653 398 46 21 1477 1871 447400918 447401287 4.280000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G034800 chr5B 37812494 37818103 5609 True 10360.000000 10360 100.000000 1 5610 1 chr5B.!!$R1 5609
1 TraesCS5B01G034800 chr5B 38515330 38520390 5060 False 1476.000000 4004 87.986500 202 5040 4 chr5B.!!$F2 4838
2 TraesCS5B01G034800 chr5A 31133056 31137983 4927 True 2598.000000 4436 88.950000 678 4975 2 chr5A.!!$R4 4297
3 TraesCS5B01G034800 chr5A 456524353 456525399 1046 True 774.000000 774 80.625000 2914 4007 1 chr5A.!!$R2 1093
4 TraesCS5B01G034800 chr5A 31285594 31286885 1291 False 452.333333 676 89.188667 741 1871 3 chr5A.!!$F1 1130
5 TraesCS5B01G034800 chr5A 31291985 31293708 1723 False 391.666667 647 85.510667 2683 4626 3 chr5A.!!$F2 1943
6 TraesCS5B01G034800 chr7B 661740151 661741386 1235 False 1269.000000 1269 85.827000 3103 4315 1 chr7B.!!$F4 1212
7 TraesCS5B01G034800 chr7B 581502776 581503851 1075 False 815.000000 815 81.261000 3266 4319 1 chr7B.!!$F2 1053
8 TraesCS5B01G034800 chr7B 723873181 723874526 1345 True 748.500000 857 87.087000 1137 3011 2 chr7B.!!$R1 1874
9 TraesCS5B01G034800 chr7B 641253209 641254155 946 False 579.000000 579 78.544000 2907 3912 1 chr7B.!!$F3 1005
10 TraesCS5B01G034800 chr7B 547261589 547262353 764 False 560.000000 560 80.526000 2943 3761 1 chr7B.!!$F1 818
11 TraesCS5B01G034800 chr7A 674104344 674105633 1289 True 1186.000000 1186 84.409000 3103 4315 1 chr7A.!!$R3 1212
12 TraesCS5B01G034800 chr7A 620532504 620533367 863 False 872.000000 872 85.297000 3294 4160 1 chr7A.!!$F2 866
13 TraesCS5B01G034800 chr7A 724655915 724656448 533 False 719.000000 719 90.744000 5061 5610 1 chr7A.!!$F4 549
14 TraesCS5B01G034800 chr7A 609334298 609334871 573 True 702.000000 702 89.446000 5058 5610 1 chr7A.!!$R2 552
15 TraesCS5B01G034800 chr7D 538908366 538909407 1041 False 992.000000 992 84.659000 3260 4264 1 chr7D.!!$F3 1004
16 TraesCS5B01G034800 chr7D 53315605 53316177 572 False 728.000000 728 90.278000 5059 5610 1 chr7D.!!$F1 551
17 TraesCS5B01G034800 chr2B 652705143 652706434 1291 False 580.500000 617 87.099000 1137 3011 2 chr2B.!!$F5 1874
18 TraesCS5B01G034800 chr2B 355386822 355388354 1532 True 565.000000 852 82.734000 2717 4318 2 chr2B.!!$R1 1601
19 TraesCS5B01G034800 chr2B 34567870 34568655 785 False 540.000000 540 79.814000 2914 3755 1 chr2B.!!$F1 841
20 TraesCS5B01G034800 chr2B 134845587 134846648 1061 False 422.333333 540 88.798000 1137 2758 3 chr2B.!!$F4 1621
21 TraesCS5B01G034800 chr2D 293859412 293860915 1503 False 555.000000 843 82.570500 2717 4289 2 chr2D.!!$F1 1572
22 TraesCS5B01G034800 chr2A 360869796 360871299 1503 False 546.000000 837 82.254000 2717 4289 2 chr2A.!!$F1 1572
23 TraesCS5B01G034800 chr6A 616799455 616800268 813 True 747.000000 747 84.091000 3340 4131 1 chr6A.!!$R3 791
24 TraesCS5B01G034800 chr6A 139049505 139050291 786 True 566.000000 566 80.336000 3103 3912 1 chr6A.!!$R2 809
25 TraesCS5B01G034800 chr3D 50061106 50061674 568 True 725.000000 725 90.210000 5059 5609 1 chr3D.!!$R1 550
26 TraesCS5B01G034800 chr3D 345247509 345248079 570 False 682.000000 682 88.889000 5059 5610 1 chr3D.!!$F2 551
27 TraesCS5B01G034800 chr3D 584950452 584951023 571 True 656.000000 656 88.042000 5059 5610 1 chr3D.!!$R2 551
28 TraesCS5B01G034800 chr6D 13674624 13675194 570 True 719.000000 719 90.070000 5062 5610 1 chr6D.!!$R1 548
29 TraesCS5B01G034800 chr6D 19493242 19493813 571 True 678.000000 678 88.715000 5059 5610 1 chr6D.!!$R2 551
30 TraesCS5B01G034800 chrUn 95815243 95815815 572 False 706.000000 706 89.583000 5059 5610 1 chrUn.!!$F1 551
31 TraesCS5B01G034800 chrUn 70552617 70553188 571 True 678.000000 678 88.715000 5059 5610 1 chrUn.!!$R1 551
32 TraesCS5B01G034800 chr1A 22062182 22062755 573 True 675.000000 675 88.562000 5059 5610 1 chr1A.!!$R1 551
33 TraesCS5B01G034800 chr1A 77098183 77098965 782 False 665.000000 665 82.818000 3522 4293 1 chr1A.!!$F1 771
34 TraesCS5B01G034800 chr4D 436907568 436908105 537 False 599.000000 599 87.570000 5099 5610 1 chr4D.!!$F1 511
35 TraesCS5B01G034800 chr4A 716526907 716527502 595 False 440.000000 440 80.702000 3307 3912 1 chr4A.!!$F1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.035036 TTGGCCATAAACGTCCACGA 59.965 50.0 6.09 0.0 43.02 4.35 F
509 530 0.389817 TCAGAACCTCACATTCGCCG 60.390 55.0 0.00 0.0 0.00 6.46 F
1122 1184 0.442310 GTGCGCACGAGCTTCAAATA 59.558 50.0 26.77 0.0 39.10 1.40 F
1925 2363 0.390603 CGACACAACCAAGGCCGATA 60.391 55.0 0.00 0.0 0.00 2.92 F
2547 3056 0.392998 CTCCAGGTCCAACCCAATCG 60.393 60.0 0.00 0.0 39.75 3.34 F
3919 4677 0.975040 AGACAGGGAGAAGCGAGCAT 60.975 55.0 0.00 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 2287 0.108186 TAGAGACGGCATGCACCTTG 60.108 55.000 21.36 5.82 0.00 3.61 R
1899 2337 1.298859 CTTGGTTGTGTCGGCCTAGC 61.299 60.000 0.00 0.00 0.00 3.42 R
2032 2496 2.159734 CGACGTACCGGTCTATATCAGC 60.160 54.545 12.40 0.00 34.75 4.26 R
3048 3592 4.051237 GGCAAGAGATTGGAAACACAAAC 58.949 43.478 0.00 0.00 42.67 2.93 R
4439 6090 1.959282 AGCCTTTGAAACCTTGCAGAG 59.041 47.619 0.00 0.00 0.00 3.35 R
5041 6728 0.673437 CGGTCCAAAATGTGCAGGTT 59.327 50.000 0.00 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.032414 GTTGCTAGTGACCAAAACGC 57.968 50.000 0.00 0.00 0.00 4.84
20 21 0.948678 TTGCTAGTGACCAAAACGCC 59.051 50.000 0.00 0.00 0.00 5.68
21 22 0.179043 TGCTAGTGACCAAAACGCCA 60.179 50.000 0.00 0.00 0.00 5.69
22 23 1.165270 GCTAGTGACCAAAACGCCAT 58.835 50.000 0.00 0.00 0.00 4.40
23 24 2.289756 TGCTAGTGACCAAAACGCCATA 60.290 45.455 0.00 0.00 0.00 2.74
24 25 2.351726 GCTAGTGACCAAAACGCCATAG 59.648 50.000 0.00 0.00 0.00 2.23
25 26 2.561478 AGTGACCAAAACGCCATAGT 57.439 45.000 0.00 0.00 0.00 2.12
26 27 3.688694 AGTGACCAAAACGCCATAGTA 57.311 42.857 0.00 0.00 0.00 1.82
27 28 3.596214 AGTGACCAAAACGCCATAGTAG 58.404 45.455 0.00 0.00 0.00 2.57
28 29 3.259876 AGTGACCAAAACGCCATAGTAGA 59.740 43.478 0.00 0.00 0.00 2.59
29 30 4.081087 AGTGACCAAAACGCCATAGTAGAT 60.081 41.667 0.00 0.00 0.00 1.98
30 31 4.034048 GTGACCAAAACGCCATAGTAGATG 59.966 45.833 0.00 0.00 0.00 2.90
31 32 4.189231 GACCAAAACGCCATAGTAGATGT 58.811 43.478 0.00 0.00 0.00 3.06
32 33 5.105269 TGACCAAAACGCCATAGTAGATGTA 60.105 40.000 0.00 0.00 0.00 2.29
33 34 5.925509 ACCAAAACGCCATAGTAGATGTAT 58.074 37.500 0.00 0.00 0.00 2.29
34 35 6.354130 ACCAAAACGCCATAGTAGATGTATT 58.646 36.000 0.00 0.00 0.00 1.89
35 36 6.826741 ACCAAAACGCCATAGTAGATGTATTT 59.173 34.615 0.00 0.00 0.00 1.40
36 37 7.338449 ACCAAAACGCCATAGTAGATGTATTTT 59.662 33.333 0.00 0.00 0.00 1.82
37 38 7.643764 CCAAAACGCCATAGTAGATGTATTTTG 59.356 37.037 0.00 0.00 34.60 2.44
38 39 6.861065 AACGCCATAGTAGATGTATTTTGG 57.139 37.500 0.00 0.00 0.00 3.28
39 40 4.755123 ACGCCATAGTAGATGTATTTTGGC 59.245 41.667 14.02 14.02 38.69 4.52
40 41 4.154195 CGCCATAGTAGATGTATTTTGGCC 59.846 45.833 16.83 0.00 38.79 5.36
41 42 5.070001 GCCATAGTAGATGTATTTTGGCCA 58.930 41.667 13.34 0.00 37.15 5.36
42 43 5.711976 GCCATAGTAGATGTATTTTGGCCAT 59.288 40.000 6.09 0.00 37.15 4.40
43 44 6.884295 GCCATAGTAGATGTATTTTGGCCATA 59.116 38.462 6.09 0.00 37.15 2.74
44 45 7.393234 GCCATAGTAGATGTATTTTGGCCATAA 59.607 37.037 6.09 9.16 37.15 1.90
45 46 9.295825 CCATAGTAGATGTATTTTGGCCATAAA 57.704 33.333 12.87 13.08 0.00 1.40
47 48 7.259290 AGTAGATGTATTTTGGCCATAAACG 57.741 36.000 12.87 0.00 0.00 3.60
48 49 6.826741 AGTAGATGTATTTTGGCCATAAACGT 59.173 34.615 12.87 12.53 0.00 3.99
49 50 6.131544 AGATGTATTTTGGCCATAAACGTC 57.868 37.500 21.65 21.65 0.00 4.34
50 51 4.705337 TGTATTTTGGCCATAAACGTCC 57.295 40.909 12.87 0.71 0.00 4.79
51 52 4.079970 TGTATTTTGGCCATAAACGTCCA 58.920 39.130 12.87 3.12 0.00 4.02
52 53 3.586100 ATTTTGGCCATAAACGTCCAC 57.414 42.857 12.87 0.00 0.00 4.02
53 54 0.875728 TTTGGCCATAAACGTCCACG 59.124 50.000 6.09 0.00 46.33 4.94
54 55 0.035036 TTGGCCATAAACGTCCACGA 59.965 50.000 6.09 0.00 43.02 4.35
55 56 0.671163 TGGCCATAAACGTCCACGAC 60.671 55.000 0.00 0.00 43.02 4.34
56 57 0.390735 GGCCATAAACGTCCACGACT 60.391 55.000 6.03 0.00 43.02 4.18
57 58 1.135024 GGCCATAAACGTCCACGACTA 60.135 52.381 6.03 0.00 43.02 2.59
58 59 2.482490 GGCCATAAACGTCCACGACTAT 60.482 50.000 6.03 0.00 43.02 2.12
59 60 3.192466 GCCATAAACGTCCACGACTATT 58.808 45.455 6.03 0.00 43.02 1.73
60 61 3.619929 GCCATAAACGTCCACGACTATTT 59.380 43.478 6.03 0.00 43.02 1.40
61 62 4.260091 GCCATAAACGTCCACGACTATTTC 60.260 45.833 6.03 0.00 43.02 2.17
62 63 4.865925 CCATAAACGTCCACGACTATTTCA 59.134 41.667 6.03 0.00 43.02 2.69
63 64 5.005394 CCATAAACGTCCACGACTATTTCAG 59.995 44.000 6.03 0.00 43.02 3.02
64 65 3.928727 AACGTCCACGACTATTTCAGA 57.071 42.857 6.03 0.00 43.02 3.27
65 66 3.928727 ACGTCCACGACTATTTCAGAA 57.071 42.857 6.03 0.00 43.02 3.02
66 67 3.834610 ACGTCCACGACTATTTCAGAAG 58.165 45.455 6.03 0.00 43.02 2.85
67 68 3.504906 ACGTCCACGACTATTTCAGAAGA 59.495 43.478 6.03 0.00 43.02 2.87
68 69 4.022589 ACGTCCACGACTATTTCAGAAGAA 60.023 41.667 6.03 0.00 43.02 2.52
69 70 4.921515 CGTCCACGACTATTTCAGAAGAAA 59.078 41.667 0.00 0.00 43.96 2.52
70 71 5.061064 CGTCCACGACTATTTCAGAAGAAAG 59.939 44.000 0.00 0.00 43.47 2.62
71 72 5.348997 GTCCACGACTATTTCAGAAGAAAGG 59.651 44.000 0.00 0.00 46.13 3.11
72 73 5.011738 TCCACGACTATTTCAGAAGAAAGGT 59.988 40.000 0.00 0.00 46.13 3.50
73 74 5.348997 CCACGACTATTTCAGAAGAAAGGTC 59.651 44.000 12.54 12.54 46.13 3.85
75 76 5.457650 GACTATTTCAGAAGAAAGGTCGC 57.542 43.478 0.00 0.00 46.13 5.19
76 77 5.153950 ACTATTTCAGAAGAAAGGTCGCT 57.846 39.130 0.00 0.00 46.13 4.93
77 78 6.282199 ACTATTTCAGAAGAAAGGTCGCTA 57.718 37.500 0.00 0.00 46.13 4.26
78 79 6.879400 ACTATTTCAGAAGAAAGGTCGCTAT 58.121 36.000 0.00 0.00 46.13 2.97
79 80 8.008513 ACTATTTCAGAAGAAAGGTCGCTATA 57.991 34.615 0.00 0.00 46.13 1.31
80 81 8.138712 ACTATTTCAGAAGAAAGGTCGCTATAG 58.861 37.037 0.00 0.00 46.13 1.31
81 82 5.916661 TTCAGAAGAAAGGTCGCTATAGT 57.083 39.130 0.84 0.00 0.00 2.12
82 83 5.502153 TCAGAAGAAAGGTCGCTATAGTC 57.498 43.478 0.84 0.00 0.00 2.59
83 84 4.948004 TCAGAAGAAAGGTCGCTATAGTCA 59.052 41.667 0.84 0.00 0.00 3.41
84 85 5.066634 TCAGAAGAAAGGTCGCTATAGTCAG 59.933 44.000 0.84 0.00 0.00 3.51
85 86 4.951094 AGAAGAAAGGTCGCTATAGTCAGT 59.049 41.667 0.84 0.00 0.00 3.41
86 87 5.419471 AGAAGAAAGGTCGCTATAGTCAGTT 59.581 40.000 0.84 0.00 0.00 3.16
87 88 5.662674 AGAAAGGTCGCTATAGTCAGTTT 57.337 39.130 0.84 0.00 0.00 2.66
88 89 6.770746 AGAAAGGTCGCTATAGTCAGTTTA 57.229 37.500 0.84 0.00 0.00 2.01
89 90 6.562518 AGAAAGGTCGCTATAGTCAGTTTAC 58.437 40.000 0.84 0.00 0.00 2.01
90 91 4.548991 AGGTCGCTATAGTCAGTTTACG 57.451 45.455 0.84 0.00 0.00 3.18
91 92 4.194640 AGGTCGCTATAGTCAGTTTACGA 58.805 43.478 0.84 0.00 0.00 3.43
92 93 4.820716 AGGTCGCTATAGTCAGTTTACGAT 59.179 41.667 0.84 0.00 0.00 3.73
93 94 5.049543 AGGTCGCTATAGTCAGTTTACGATC 60.050 44.000 0.84 0.00 0.00 3.69
94 95 4.839706 GTCGCTATAGTCAGTTTACGATCG 59.160 45.833 14.88 14.88 0.00 3.69
95 96 4.509230 TCGCTATAGTCAGTTTACGATCGT 59.491 41.667 25.94 25.94 0.00 3.73
96 97 4.839706 CGCTATAGTCAGTTTACGATCGTC 59.160 45.833 26.48 10.92 0.00 4.20
97 98 5.557703 CGCTATAGTCAGTTTACGATCGTCA 60.558 44.000 26.48 11.80 0.00 4.35
98 99 5.846994 GCTATAGTCAGTTTACGATCGTCAG 59.153 44.000 26.48 7.78 0.00 3.51
99 100 2.864968 AGTCAGTTTACGATCGTCAGC 58.135 47.619 26.48 16.35 0.00 4.26
100 101 2.488545 AGTCAGTTTACGATCGTCAGCT 59.511 45.455 26.48 18.56 0.00 4.24
101 102 3.057456 AGTCAGTTTACGATCGTCAGCTT 60.057 43.478 26.48 3.53 0.00 3.74
102 103 3.673809 GTCAGTTTACGATCGTCAGCTTT 59.326 43.478 26.48 4.05 0.00 3.51
103 104 4.150098 GTCAGTTTACGATCGTCAGCTTTT 59.850 41.667 26.48 0.00 0.00 2.27
104 105 4.149922 TCAGTTTACGATCGTCAGCTTTTG 59.850 41.667 26.48 14.45 0.00 2.44
105 106 4.149922 CAGTTTACGATCGTCAGCTTTTGA 59.850 41.667 26.48 0.00 0.00 2.69
138 139 7.736447 TTTTTGTCACAAAAAGGTCACAAAT 57.264 28.000 22.01 0.00 34.59 2.32
139 140 7.736447 TTTTGTCACAAAAAGGTCACAAATT 57.264 28.000 13.46 0.00 34.59 1.82
140 141 8.833231 TTTTGTCACAAAAAGGTCACAAATTA 57.167 26.923 13.46 0.00 34.59 1.40
141 142 8.833231 TTTGTCACAAAAAGGTCACAAATTAA 57.167 26.923 0.00 0.00 30.70 1.40
142 143 8.833231 TTGTCACAAAAAGGTCACAAATTAAA 57.167 26.923 0.00 0.00 0.00 1.52
143 144 8.833231 TGTCACAAAAAGGTCACAAATTAAAA 57.167 26.923 0.00 0.00 0.00 1.52
144 145 9.273016 TGTCACAAAAAGGTCACAAATTAAAAA 57.727 25.926 0.00 0.00 0.00 1.94
164 165 7.537596 AAAAATAATGACCATTCAGTGACCA 57.462 32.000 0.00 0.00 34.35 4.02
165 166 7.537596 AAAATAATGACCATTCAGTGACCAA 57.462 32.000 0.00 0.00 34.35 3.67
166 167 7.722949 AAATAATGACCATTCAGTGACCAAT 57.277 32.000 0.00 0.00 34.35 3.16
167 168 8.821686 AAATAATGACCATTCAGTGACCAATA 57.178 30.769 0.00 0.00 34.35 1.90
168 169 8.455903 AATAATGACCATTCAGTGACCAATAG 57.544 34.615 0.00 0.00 34.35 1.73
169 170 4.908601 TGACCATTCAGTGACCAATAGT 57.091 40.909 0.00 0.00 0.00 2.12
170 171 4.578871 TGACCATTCAGTGACCAATAGTG 58.421 43.478 0.00 0.00 0.00 2.74
171 172 3.347216 ACCATTCAGTGACCAATAGTGC 58.653 45.455 0.00 0.00 0.00 4.40
172 173 3.009473 ACCATTCAGTGACCAATAGTGCT 59.991 43.478 0.00 0.00 0.00 4.40
173 174 3.376234 CCATTCAGTGACCAATAGTGCTG 59.624 47.826 0.00 0.00 32.30 4.41
174 175 2.768253 TCAGTGACCAATAGTGCTGG 57.232 50.000 0.00 0.00 40.05 4.85
180 181 2.949177 ACCAATAGTGCTGGTCACAA 57.051 45.000 0.00 0.00 44.05 3.33
181 182 2.783135 ACCAATAGTGCTGGTCACAAG 58.217 47.619 0.00 0.00 44.05 3.16
182 183 2.106511 ACCAATAGTGCTGGTCACAAGT 59.893 45.455 0.00 0.00 44.05 3.16
183 184 3.435026 ACCAATAGTGCTGGTCACAAGTT 60.435 43.478 0.00 0.00 44.05 2.66
184 185 5.520916 ACCAATAGTGCTGGTCACAAGTTG 61.521 45.833 0.00 0.00 44.05 3.16
185 186 7.669027 ACCAATAGTGCTGGTCACAAGTTGA 62.669 44.000 10.54 0.00 44.05 3.18
227 228 2.731976 GTCAAGTCATTCAGTCCGACAC 59.268 50.000 0.40 0.00 31.92 3.67
228 229 2.069273 CAAGTCATTCAGTCCGACACC 58.931 52.381 0.40 0.00 31.92 4.16
244 245 3.697747 CCGGTAAGGCGGACACCA 61.698 66.667 0.00 0.00 32.32 4.17
285 305 1.787847 GAAGACGGGCATTGACACG 59.212 57.895 0.00 0.00 0.00 4.49
286 306 1.635663 GAAGACGGGCATTGACACGG 61.636 60.000 7.46 0.00 0.00 4.94
362 382 5.614308 TCCACTTCATCACCATATCATCAC 58.386 41.667 0.00 0.00 0.00 3.06
364 384 4.450080 CACTTCATCACCATATCATCACCG 59.550 45.833 0.00 0.00 0.00 4.94
366 386 5.304357 ACTTCATCACCATATCATCACCGTA 59.696 40.000 0.00 0.00 0.00 4.02
395 415 2.094286 AGCTCATGGAGAAGACAAGACG 60.094 50.000 0.00 0.00 0.00 4.18
397 417 3.768406 CTCATGGAGAAGACAAGACGAG 58.232 50.000 0.00 0.00 0.00 4.18
405 425 2.973419 AGACAAGACGAGAAGACGAC 57.027 50.000 0.00 0.00 37.03 4.34
426 446 2.159338 CGACCATTGCAGCAGCTTAATT 60.159 45.455 1.76 0.00 42.74 1.40
437 457 2.164422 GCAGCTTAATTGGAGGTGGTTC 59.836 50.000 18.47 4.92 41.61 3.62
442 462 0.953960 AATTGGAGGTGGTTCGCGAC 60.954 55.000 9.15 3.93 0.00 5.19
456 477 2.202492 CGACTTGACTCGCGGAGG 60.202 66.667 6.13 0.00 33.35 4.30
458 479 1.642037 CGACTTGACTCGCGGAGGTA 61.642 60.000 6.13 0.00 33.35 3.08
465 486 3.973657 TGACTCGCGGAGGTAATTAATC 58.026 45.455 6.13 0.00 33.35 1.75
466 487 2.978489 GACTCGCGGAGGTAATTAATCG 59.022 50.000 6.13 0.00 33.35 3.34
474 495 4.715713 GGAGGTAATTAATCGGGAGCTTT 58.284 43.478 0.00 0.00 0.00 3.51
483 504 2.351276 GGGAGCTTTTCGAGGCCA 59.649 61.111 5.01 0.00 0.00 5.36
490 511 1.156736 CTTTTCGAGGCCACGTGAAT 58.843 50.000 22.14 1.35 34.70 2.57
491 512 1.128692 CTTTTCGAGGCCACGTGAATC 59.871 52.381 22.14 10.63 34.70 2.52
507 528 3.002791 TGAATCAGAACCTCACATTCGC 58.997 45.455 0.00 0.00 0.00 4.70
509 530 0.389817 TCAGAACCTCACATTCGCCG 60.390 55.000 0.00 0.00 0.00 6.46
522 543 0.953471 TTCGCCGAAGTCACATTGGG 60.953 55.000 0.00 0.00 0.00 4.12
524 545 4.395519 CCGAAGTCACATTGGGCA 57.604 55.556 0.00 0.00 0.00 5.36
526 547 1.497278 CGAAGTCACATTGGGCACG 59.503 57.895 0.00 0.00 0.00 5.34
554 575 0.463295 CCACAGAGCGCATCCTTCAT 60.463 55.000 11.47 0.00 0.00 2.57
558 579 1.069823 CAGAGCGCATCCTTCATAGGT 59.930 52.381 11.47 0.00 42.60 3.08
653 674 0.814457 GGTACATTTTCATGCCCGCA 59.186 50.000 0.00 0.00 33.05 5.69
656 677 2.766345 ACATTTTCATGCCCGCATTT 57.234 40.000 0.00 0.00 33.90 2.32
691 712 5.448438 TGTCGTGTCAAACATTCATTAAGC 58.552 37.500 0.00 0.00 0.00 3.09
791 813 2.683362 GCTTTTCCTCAACTATTCCCGG 59.317 50.000 0.00 0.00 0.00 5.73
796 818 3.112263 TCCTCAACTATTCCCGGTCAAT 58.888 45.455 0.00 0.34 0.00 2.57
827 854 2.973945 GGACGTGTCCTATTCTTTGCT 58.026 47.619 11.81 0.00 46.16 3.91
828 855 2.930682 GGACGTGTCCTATTCTTTGCTC 59.069 50.000 11.81 0.00 46.16 4.26
829 856 2.599082 GACGTGTCCTATTCTTTGCTCG 59.401 50.000 0.00 0.00 0.00 5.03
830 857 1.324736 CGTGTCCTATTCTTTGCTCGC 59.675 52.381 0.00 0.00 0.00 5.03
831 858 2.622436 GTGTCCTATTCTTTGCTCGCT 58.378 47.619 0.00 0.00 0.00 4.93
832 859 2.349886 GTGTCCTATTCTTTGCTCGCTG 59.650 50.000 0.00 0.00 0.00 5.18
888 915 9.605275 AGGAAAGAAAAGAAAATGAAAGGAAAG 57.395 29.630 0.00 0.00 0.00 2.62
889 916 9.599866 GGAAAGAAAAGAAAATGAAAGGAAAGA 57.400 29.630 0.00 0.00 0.00 2.52
914 949 1.094073 TAGCTAGGACACGAGGCGTC 61.094 60.000 0.00 0.00 38.32 5.19
956 997 2.352032 CCGCCGTCTTCCTTCCTCT 61.352 63.158 0.00 0.00 0.00 3.69
957 998 1.035932 CCGCCGTCTTCCTTCCTCTA 61.036 60.000 0.00 0.00 0.00 2.43
964 1005 3.818773 CGTCTTCCTTCCTCTATCTCCTC 59.181 52.174 0.00 0.00 0.00 3.71
973 1014 2.833121 TATCTCCTCGCTGCGCCA 60.833 61.111 18.65 0.00 0.00 5.69
1009 1060 3.055719 CCGCCGCCATGAACAACT 61.056 61.111 0.00 0.00 0.00 3.16
1011 1062 1.442520 CGCCGCCATGAACAACTTG 60.443 57.895 0.00 0.00 0.00 3.16
1036 1087 2.500504 ACCGTAAGTTTCCTCTCCATCC 59.499 50.000 0.00 0.00 0.00 3.51
1037 1088 2.500098 CCGTAAGTTTCCTCTCCATCCA 59.500 50.000 0.00 0.00 0.00 3.41
1038 1089 3.522553 CGTAAGTTTCCTCTCCATCCAC 58.477 50.000 0.00 0.00 0.00 4.02
1039 1090 3.195825 CGTAAGTTTCCTCTCCATCCACT 59.804 47.826 0.00 0.00 0.00 4.00
1040 1091 3.990959 AAGTTTCCTCTCCATCCACTC 57.009 47.619 0.00 0.00 0.00 3.51
1041 1092 3.197927 AGTTTCCTCTCCATCCACTCT 57.802 47.619 0.00 0.00 0.00 3.24
1042 1093 2.836981 AGTTTCCTCTCCATCCACTCTG 59.163 50.000 0.00 0.00 0.00 3.35
1043 1094 2.834549 GTTTCCTCTCCATCCACTCTGA 59.165 50.000 0.00 0.00 0.00 3.27
1044 1095 2.928036 TCCTCTCCATCCACTCTGAA 57.072 50.000 0.00 0.00 0.00 3.02
1052 1114 0.621862 ATCCACTCTGAACCCTCCCC 60.622 60.000 0.00 0.00 0.00 4.81
1099 1161 1.226128 GCTCAATTGCTTCGCCGAC 60.226 57.895 0.00 0.00 0.00 4.79
1122 1184 0.442310 GTGCGCACGAGCTTCAAATA 59.558 50.000 26.77 0.00 39.10 1.40
1145 1207 3.546714 AAGGAACCGTTCGCCAGGG 62.547 63.158 5.19 0.00 36.38 4.45
1149 1211 3.325201 AACCGTTCGCCAGGGATCC 62.325 63.158 1.92 1.92 34.17 3.36
1154 1216 3.680620 TTCGCCAGGGATCCGCTTG 62.681 63.158 5.45 4.14 0.00 4.01
1230 1292 1.406069 GGATCTGCTTGCTCCTTTCGA 60.406 52.381 0.00 0.00 0.00 3.71
1236 1298 1.871080 CTTGCTCCTTTCGAGTGTGT 58.129 50.000 0.00 0.00 41.10 3.72
1239 1301 0.601311 GCTCCTTTCGAGTGTGTGCT 60.601 55.000 0.00 0.00 41.10 4.40
1240 1302 1.336887 GCTCCTTTCGAGTGTGTGCTA 60.337 52.381 0.00 0.00 41.10 3.49
1241 1303 2.675317 GCTCCTTTCGAGTGTGTGCTAT 60.675 50.000 0.00 0.00 41.10 2.97
1242 1304 3.428999 GCTCCTTTCGAGTGTGTGCTATA 60.429 47.826 0.00 0.00 41.10 1.31
1448 1875 7.669427 TGAGAATGTTCTTTTGGCATTACATT 58.331 30.769 10.75 10.75 37.73 2.71
1491 1918 7.080099 CGTCATGTTCTGATTTTGAAAGTGAT 58.920 34.615 0.00 0.00 35.97 3.06
1496 1923 8.169977 TGTTCTGATTTTGAAAGTGATAGCTT 57.830 30.769 0.00 0.00 0.00 3.74
1497 1924 8.077991 TGTTCTGATTTTGAAAGTGATAGCTTG 58.922 33.333 0.00 0.00 0.00 4.01
1572 1999 6.238648 AGTAATACTCTTTTGGGACCAGTTG 58.761 40.000 0.00 0.00 0.00 3.16
1602 2029 5.284864 TGTCAATGCTTTATTTTCGCAACA 58.715 33.333 0.00 0.00 37.20 3.33
1606 2033 6.644181 TCAATGCTTTATTTTCGCAACAATCA 59.356 30.769 0.00 0.00 37.20 2.57
1623 2050 4.160252 ACAATCATGTCCTATTGGTTTGGC 59.840 41.667 9.05 0.00 37.40 4.52
1651 2078 7.201767 GGTTTTAGCTGATGATGAAAGTAGCAT 60.202 37.037 0.00 0.00 33.81 3.79
1670 2097 6.720112 AGCATCACAATTGGCTATAATGTT 57.280 33.333 10.83 0.00 34.25 2.71
1741 2168 6.202762 TGTGCAGTACATGTTCTTCTAAACAG 59.797 38.462 2.30 0.00 42.09 3.16
1771 2199 2.040813 TGCAGGATTCCTTTGAGCTTCT 59.959 45.455 1.28 0.00 0.00 2.85
1778 2206 1.079819 CTTTGAGCTTCTCCGGCGA 60.080 57.895 9.30 0.00 34.52 5.54
1817 2245 2.178984 GGGGGATGTTGAAATGGGGATA 59.821 50.000 0.00 0.00 0.00 2.59
1825 2253 4.210331 GTTGAAATGGGGATACATCAGCT 58.790 43.478 0.00 0.00 39.74 4.24
1826 2254 5.104151 TGTTGAAATGGGGATACATCAGCTA 60.104 40.000 0.00 0.00 39.74 3.32
1856 2284 7.704047 GCCTCTGATAATTTAAAAGGCTTCTTG 59.296 37.037 14.76 0.00 43.49 3.02
1871 2299 0.961019 TCTTGAACAAGGTGCATGCC 59.039 50.000 16.68 6.42 38.88 4.40
1884 2322 1.405463 TGCATGCCGTCTCTACTAGTG 59.595 52.381 16.68 0.00 0.00 2.74
1898 2336 7.871463 GTCTCTACTAGTGTCCAAGCTTTTAAA 59.129 37.037 5.39 0.00 0.00 1.52
1899 2337 8.088981 TCTCTACTAGTGTCCAAGCTTTTAAAG 58.911 37.037 5.39 0.00 0.00 1.85
1912 2350 2.843401 TTTAAAGCTAGGCCGACACA 57.157 45.000 0.00 0.00 0.00 3.72
1915 2353 0.605589 AAAGCTAGGCCGACACAACC 60.606 55.000 0.00 0.00 0.00 3.77
1918 2356 1.298859 GCTAGGCCGACACAACCAAG 61.299 60.000 0.00 0.00 0.00 3.61
1919 2357 0.673644 CTAGGCCGACACAACCAAGG 60.674 60.000 0.00 0.00 0.00 3.61
1920 2358 2.741486 TAGGCCGACACAACCAAGGC 62.741 60.000 0.00 0.00 46.51 4.35
1921 2359 3.670377 GCCGACACAACCAAGGCC 61.670 66.667 0.00 0.00 41.81 5.19
1922 2360 3.353836 CCGACACAACCAAGGCCG 61.354 66.667 0.00 0.00 0.00 6.13
1924 2362 1.671054 CGACACAACCAAGGCCGAT 60.671 57.895 0.00 0.00 0.00 4.18
1925 2363 0.390603 CGACACAACCAAGGCCGATA 60.391 55.000 0.00 0.00 0.00 2.92
1940 2383 2.488153 GCCGATATATCAGTTTTGGGGC 59.512 50.000 13.11 10.19 0.00 5.80
1950 2393 5.249780 TCAGTTTTGGGGCTTTACTGATA 57.750 39.130 0.00 0.00 40.01 2.15
1951 2394 5.826643 TCAGTTTTGGGGCTTTACTGATAT 58.173 37.500 0.00 0.00 40.01 1.63
1952 2395 6.964464 TCAGTTTTGGGGCTTTACTGATATA 58.036 36.000 0.00 0.00 40.01 0.86
1953 2396 7.406916 TCAGTTTTGGGGCTTTACTGATATAA 58.593 34.615 0.00 0.00 40.01 0.98
1954 2397 7.891183 TCAGTTTTGGGGCTTTACTGATATAAA 59.109 33.333 0.00 0.00 40.01 1.40
1955 2398 7.973944 CAGTTTTGGGGCTTTACTGATATAAAC 59.026 37.037 0.00 0.00 38.74 2.01
1956 2399 7.672239 AGTTTTGGGGCTTTACTGATATAAACA 59.328 33.333 0.00 0.00 0.00 2.83
1957 2400 8.474831 GTTTTGGGGCTTTACTGATATAAACAT 58.525 33.333 0.00 0.00 0.00 2.71
1958 2401 9.702253 TTTTGGGGCTTTACTGATATAAACATA 57.298 29.630 0.00 0.00 0.00 2.29
1959 2402 9.875708 TTTGGGGCTTTACTGATATAAACATAT 57.124 29.630 0.00 0.00 0.00 1.78
2010 2453 9.546428 TTTCACACATATCATTCGATATTGACT 57.454 29.630 0.00 0.00 41.21 3.41
2032 2496 3.694566 TGATATCTGACCCGATATGACCG 59.305 47.826 3.98 0.00 36.88 4.79
2071 2535 7.433131 GGTACGTCGATGAACACTATTTATCAA 59.567 37.037 12.58 0.00 0.00 2.57
2141 2605 8.810652 TCAAAGAAATGGTTAATGCTTTGTAC 57.189 30.769 0.00 0.00 39.79 2.90
2218 2707 9.965824 AACAAGTTCACAAACTAGGAATTTATG 57.034 29.630 0.00 0.00 45.07 1.90
2222 2711 9.965824 AGTTCACAAACTAGGAATTTATGTTTG 57.034 29.630 17.53 17.53 43.98 2.93
2251 2740 2.031682 GGAGCATTGACGGCATACATTC 60.032 50.000 0.00 0.00 0.00 2.67
2252 2741 1.599071 AGCATTGACGGCATACATTCG 59.401 47.619 0.00 0.00 0.00 3.34
2271 2769 7.269316 ACATTCGGTTTTACATTTTTGAACCT 58.731 30.769 0.00 0.00 38.04 3.50
2293 2791 9.492973 AACCTGAATATTGAAAAACAAATCCAG 57.507 29.630 0.00 0.00 42.03 3.86
2339 2837 7.927048 TCTACATATCGTCCAATATATCACCG 58.073 38.462 0.00 0.00 0.00 4.94
2346 2844 6.127101 TCGTCCAATATATCACCGGATATCT 58.873 40.000 9.46 0.00 43.89 1.98
2368 2870 5.097742 TGACATCCGATATGTTCCAAACT 57.902 39.130 5.07 0.00 31.52 2.66
2378 2880 7.065803 CCGATATGTTCCAAACTGATACAAACT 59.934 37.037 0.00 0.00 0.00 2.66
2382 2884 6.791303 TGTTCCAAACTGATACAAACTCAAC 58.209 36.000 0.00 0.00 0.00 3.18
2480 2989 4.709250 TGCTTTCATACACACACAGGTTA 58.291 39.130 0.00 0.00 0.00 2.85
2547 3056 0.392998 CTCCAGGTCCAACCCAATCG 60.393 60.000 0.00 0.00 39.75 3.34
2588 3108 8.830580 TGCTTCTTCTTATGTTATTATGCTCAC 58.169 33.333 0.00 0.00 0.00 3.51
2660 3180 5.537674 AGACTGCAAATGAGGAATCAAAAGT 59.462 36.000 0.00 0.00 0.00 2.66
2889 3431 2.820059 TTCCTAGCTGTATCCGCATG 57.180 50.000 0.00 0.00 0.00 4.06
2995 3539 4.570874 GGATGCGGGAAGGGCTCC 62.571 72.222 0.00 0.00 44.54 4.70
3919 4677 0.975040 AGACAGGGAGAAGCGAGCAT 60.975 55.000 0.00 0.00 0.00 3.79
4143 4935 2.228822 AGCAGGTTACCTTTCATTTGCG 59.771 45.455 0.00 0.00 35.59 4.85
4202 5256 7.666804 AGCATGCATATGTGAACATATTTCCTA 59.333 33.333 21.98 0.67 44.66 2.94
4294 5348 1.343142 AGTGACACATGTAAGGCGACA 59.657 47.619 8.59 0.00 0.00 4.35
4297 5351 3.002862 GTGACACATGTAAGGCGACAAAA 59.997 43.478 0.00 0.00 31.83 2.44
4330 5659 9.435570 AAACAGCTTATTCTATTCTACTCCCTA 57.564 33.333 0.00 0.00 0.00 3.53
4331 5660 8.644374 ACAGCTTATTCTATTCTACTCCCTAG 57.356 38.462 0.00 0.00 0.00 3.02
4345 5674 5.871324 ACTCCCTAGGTCCCAAAATAAAA 57.129 39.130 8.29 0.00 0.00 1.52
4348 5677 5.576128 TCCCTAGGTCCCAAAATAAAAGTG 58.424 41.667 8.29 0.00 0.00 3.16
4349 5678 5.075344 TCCCTAGGTCCCAAAATAAAAGTGT 59.925 40.000 8.29 0.00 0.00 3.55
4351 5680 5.123344 CCTAGGTCCCAAAATAAAAGTGTCG 59.877 44.000 0.00 0.00 0.00 4.35
4352 5681 3.254903 AGGTCCCAAAATAAAAGTGTCGC 59.745 43.478 0.00 0.00 0.00 5.19
4353 5682 3.254903 GGTCCCAAAATAAAAGTGTCGCT 59.745 43.478 0.00 0.00 0.00 4.93
4354 5683 4.226761 GTCCCAAAATAAAAGTGTCGCTG 58.773 43.478 0.00 0.00 0.00 5.18
4355 5684 4.023536 GTCCCAAAATAAAAGTGTCGCTGA 60.024 41.667 0.00 0.00 0.00 4.26
4357 5686 5.242838 TCCCAAAATAAAAGTGTCGCTGATT 59.757 36.000 0.00 0.00 0.00 2.57
4359 5688 7.040340 TCCCAAAATAAAAGTGTCGCTGATTTA 60.040 33.333 0.00 0.00 0.00 1.40
4360 5689 7.273381 CCCAAAATAAAAGTGTCGCTGATTTAG 59.727 37.037 0.00 0.00 0.00 1.85
4361 5690 7.807907 CCAAAATAAAAGTGTCGCTGATTTAGT 59.192 33.333 0.00 0.00 0.00 2.24
4365 6012 9.601217 AATAAAAGTGTCGCTGATTTAGTAGAT 57.399 29.630 0.00 0.00 0.00 1.98
4439 6090 3.184986 GTGATGCTGGCATTTTGTTTGTC 59.815 43.478 9.52 0.00 36.70 3.18
4461 6112 3.149196 TCTGCAAGGTTTCAAAGGCTAG 58.851 45.455 0.00 0.00 0.00 3.42
4561 6218 2.288213 CGCCATAATCGTTCTCCTGCTA 60.288 50.000 0.00 0.00 0.00 3.49
4564 6221 4.757149 GCCATAATCGTTCTCCTGCTAATT 59.243 41.667 0.00 0.00 0.00 1.40
4632 6303 4.819761 GAGCATGACCTCGGCGCA 62.820 66.667 10.83 0.00 0.00 6.09
4655 6326 7.306225 CGCAGCAGAATATATATATCGTGGTTG 60.306 40.741 5.70 6.09 0.00 3.77
4659 6330 7.517417 GCAGAATATATATATCGTGGTTGCTGC 60.517 40.741 5.70 5.31 35.41 5.25
4660 6331 7.708322 CAGAATATATATATCGTGGTTGCTGCT 59.292 37.037 5.70 0.00 0.00 4.24
4696 6367 6.586344 TCTTTACAATAAGAGAGCATCCAGG 58.414 40.000 0.00 0.00 33.66 4.45
4705 6376 5.009436 AGAGAGCATCCAGGTAGTATGAT 57.991 43.478 0.00 0.00 33.66 2.45
4752 6423 8.076781 GTCCTGTATTTGGAAGAGTTTCTTTTC 58.923 37.037 0.00 0.00 36.73 2.29
4783 6455 3.200165 AGGCCCCTCTAACACTGAATTAC 59.800 47.826 0.00 0.00 0.00 1.89
4784 6456 3.054655 GGCCCCTCTAACACTGAATTACA 60.055 47.826 0.00 0.00 0.00 2.41
4791 6463 6.037610 CCTCTAACACTGAATTACATCAAGCC 59.962 42.308 0.00 0.00 0.00 4.35
4805 6477 1.302832 AAGCCTGCCTACACACAGC 60.303 57.895 0.00 0.00 32.37 4.40
4816 6488 1.119684 ACACACAGCACAGGTACAGA 58.880 50.000 0.00 0.00 0.00 3.41
4831 6503 4.278669 AGGTACAGATAGAATGCCAGTACG 59.721 45.833 0.00 0.00 33.16 3.67
4836 6508 2.134201 TAGAATGCCAGTACGATGCG 57.866 50.000 0.00 0.00 0.00 4.73
4917 6597 8.539770 TTTGTCAGCTTGTTCTTTCTATCTAG 57.460 34.615 0.00 0.00 0.00 2.43
5001 6686 5.810095 TCAGTGATCTCTCTACAAGACAGA 58.190 41.667 0.00 0.00 0.00 3.41
5003 6688 6.717084 TCAGTGATCTCTCTACAAGACAGAAA 59.283 38.462 0.00 0.00 0.00 2.52
5012 6697 8.251383 TCTCTACAAGACAGAAATAATAGGGG 57.749 38.462 0.00 0.00 0.00 4.79
5013 6698 8.065627 TCTCTACAAGACAGAAATAATAGGGGA 58.934 37.037 0.00 0.00 0.00 4.81
5040 6727 2.163818 TACTGGAACTTCACTTGCCG 57.836 50.000 0.00 0.00 0.00 5.69
5041 6728 0.468226 ACTGGAACTTCACTTGCCGA 59.532 50.000 0.00 0.00 0.00 5.54
5042 6729 1.134220 ACTGGAACTTCACTTGCCGAA 60.134 47.619 0.00 0.00 0.00 4.30
5043 6730 1.264288 CTGGAACTTCACTTGCCGAAC 59.736 52.381 0.00 0.00 0.00 3.95
5044 6731 0.591659 GGAACTTCACTTGCCGAACC 59.408 55.000 0.00 0.00 0.00 3.62
5045 6732 1.594331 GAACTTCACTTGCCGAACCT 58.406 50.000 0.00 0.00 0.00 3.50
5046 6733 1.264288 GAACTTCACTTGCCGAACCTG 59.736 52.381 0.00 0.00 0.00 4.00
5047 6734 1.166531 ACTTCACTTGCCGAACCTGC 61.167 55.000 0.00 0.00 0.00 4.85
5048 6735 1.153066 TTCACTTGCCGAACCTGCA 60.153 52.632 0.00 0.00 36.84 4.41
5049 6736 1.444119 TTCACTTGCCGAACCTGCAC 61.444 55.000 0.00 0.00 38.72 4.57
5050 6737 2.186160 CACTTGCCGAACCTGCACA 61.186 57.895 0.00 0.00 38.72 4.57
5051 6738 1.228245 ACTTGCCGAACCTGCACAT 60.228 52.632 0.00 0.00 38.72 3.21
5052 6739 0.823356 ACTTGCCGAACCTGCACATT 60.823 50.000 0.00 0.00 38.72 2.71
5053 6740 0.314935 CTTGCCGAACCTGCACATTT 59.685 50.000 0.00 0.00 38.72 2.32
5054 6741 0.749649 TTGCCGAACCTGCACATTTT 59.250 45.000 0.00 0.00 38.72 1.82
5055 6742 0.031857 TGCCGAACCTGCACATTTTG 59.968 50.000 0.00 0.00 32.85 2.44
5056 6743 0.667184 GCCGAACCTGCACATTTTGG 60.667 55.000 0.00 0.00 0.00 3.28
5217 6908 2.586792 GGATCTGGCGGCTTCACT 59.413 61.111 11.43 0.00 0.00 3.41
5582 7369 2.569404 GTTGTGGTGAGGATCCTTCTCT 59.431 50.000 17.42 0.00 32.78 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.334689 GGCGTTTTGGTCACTAGCAAC 60.335 52.381 0.00 0.00 42.54 4.17
1 2 0.948678 GGCGTTTTGGTCACTAGCAA 59.051 50.000 0.00 0.00 41.20 3.91
2 3 0.179043 TGGCGTTTTGGTCACTAGCA 60.179 50.000 0.00 0.00 0.00 3.49
5 6 3.688694 ACTATGGCGTTTTGGTCACTA 57.311 42.857 0.00 0.00 0.00 2.74
6 7 2.561478 ACTATGGCGTTTTGGTCACT 57.439 45.000 0.00 0.00 0.00 3.41
7 8 3.592059 TCTACTATGGCGTTTTGGTCAC 58.408 45.455 0.00 0.00 0.00 3.67
8 9 3.965379 TCTACTATGGCGTTTTGGTCA 57.035 42.857 0.00 0.00 0.00 4.02
9 10 4.189231 ACATCTACTATGGCGTTTTGGTC 58.811 43.478 0.00 0.00 0.00 4.02
10 11 4.216411 ACATCTACTATGGCGTTTTGGT 57.784 40.909 0.00 0.00 0.00 3.67
11 12 6.861065 AATACATCTACTATGGCGTTTTGG 57.139 37.500 0.00 0.00 0.00 3.28
12 13 7.643764 CCAAAATACATCTACTATGGCGTTTTG 59.356 37.037 12.60 12.60 33.61 2.44
13 14 7.681065 GCCAAAATACATCTACTATGGCGTTTT 60.681 37.037 0.00 0.00 42.18 2.43
14 15 6.238648 GCCAAAATACATCTACTATGGCGTTT 60.239 38.462 0.00 0.00 42.18 3.60
15 16 5.238650 GCCAAAATACATCTACTATGGCGTT 59.761 40.000 0.00 0.00 42.18 4.84
16 17 4.755123 GCCAAAATACATCTACTATGGCGT 59.245 41.667 0.00 0.00 42.18 5.68
17 18 5.283060 GCCAAAATACATCTACTATGGCG 57.717 43.478 0.00 0.00 42.18 5.69
19 20 8.862325 TTATGGCCAAAATACATCTACTATGG 57.138 34.615 10.96 0.00 0.00 2.74
21 22 8.999431 CGTTTATGGCCAAAATACATCTACTAT 58.001 33.333 10.96 0.00 0.00 2.12
22 23 7.988599 ACGTTTATGGCCAAAATACATCTACTA 59.011 33.333 10.96 0.00 0.00 1.82
23 24 6.826741 ACGTTTATGGCCAAAATACATCTACT 59.173 34.615 10.96 0.00 0.00 2.57
24 25 7.023197 ACGTTTATGGCCAAAATACATCTAC 57.977 36.000 10.96 0.00 0.00 2.59
25 26 6.261381 GGACGTTTATGGCCAAAATACATCTA 59.739 38.462 10.96 0.00 0.00 1.98
26 27 5.067283 GGACGTTTATGGCCAAAATACATCT 59.933 40.000 10.96 0.00 0.00 2.90
27 28 5.163602 TGGACGTTTATGGCCAAAATACATC 60.164 40.000 10.96 4.54 0.00 3.06
28 29 4.707448 TGGACGTTTATGGCCAAAATACAT 59.293 37.500 10.96 0.00 0.00 2.29
29 30 4.079970 TGGACGTTTATGGCCAAAATACA 58.920 39.130 10.96 2.38 0.00 2.29
30 31 4.417506 GTGGACGTTTATGGCCAAAATAC 58.582 43.478 10.96 5.73 31.18 1.89
31 32 3.127203 CGTGGACGTTTATGGCCAAAATA 59.873 43.478 10.96 0.00 31.18 1.40
32 33 2.094957 CGTGGACGTTTATGGCCAAAAT 60.095 45.455 10.96 0.00 31.18 1.82
33 34 1.267261 CGTGGACGTTTATGGCCAAAA 59.733 47.619 10.96 9.32 31.18 2.44
34 35 0.875728 CGTGGACGTTTATGGCCAAA 59.124 50.000 10.96 2.40 31.18 3.28
35 36 0.035036 TCGTGGACGTTTATGGCCAA 59.965 50.000 10.96 0.00 40.80 4.52
36 37 0.671163 GTCGTGGACGTTTATGGCCA 60.671 55.000 8.56 8.56 40.80 5.36
37 38 0.390735 AGTCGTGGACGTTTATGGCC 60.391 55.000 0.00 0.00 40.80 5.36
38 39 2.282701 TAGTCGTGGACGTTTATGGC 57.717 50.000 0.00 0.00 40.80 4.40
39 40 4.865925 TGAAATAGTCGTGGACGTTTATGG 59.134 41.667 0.00 0.00 40.80 2.74
40 41 5.803461 TCTGAAATAGTCGTGGACGTTTATG 59.197 40.000 0.00 0.00 40.80 1.90
41 42 5.957798 TCTGAAATAGTCGTGGACGTTTAT 58.042 37.500 0.00 0.00 40.80 1.40
42 43 5.375417 TCTGAAATAGTCGTGGACGTTTA 57.625 39.130 0.00 0.00 40.80 2.01
43 44 4.247267 TCTGAAATAGTCGTGGACGTTT 57.753 40.909 0.00 3.15 40.80 3.60
44 45 3.928727 TCTGAAATAGTCGTGGACGTT 57.071 42.857 0.00 0.00 40.80 3.99
45 46 3.504906 TCTTCTGAAATAGTCGTGGACGT 59.495 43.478 0.00 0.00 40.80 4.34
46 47 4.092771 TCTTCTGAAATAGTCGTGGACG 57.907 45.455 0.00 0.00 37.67 4.79
47 48 5.348997 CCTTTCTTCTGAAATAGTCGTGGAC 59.651 44.000 0.00 0.00 40.85 4.02
48 49 5.011738 ACCTTTCTTCTGAAATAGTCGTGGA 59.988 40.000 0.00 0.00 40.85 4.02
49 50 5.238583 ACCTTTCTTCTGAAATAGTCGTGG 58.761 41.667 0.00 0.00 40.85 4.94
50 51 6.396459 GACCTTTCTTCTGAAATAGTCGTG 57.604 41.667 0.00 0.00 40.85 4.35
53 54 5.172205 AGCGACCTTTCTTCTGAAATAGTC 58.828 41.667 0.00 0.00 40.85 2.59
54 55 5.153950 AGCGACCTTTCTTCTGAAATAGT 57.846 39.130 0.00 0.00 40.85 2.12
55 56 8.138712 ACTATAGCGACCTTTCTTCTGAAATAG 58.861 37.037 0.00 0.00 40.85 1.73
56 57 8.008513 ACTATAGCGACCTTTCTTCTGAAATA 57.991 34.615 0.00 0.00 40.85 1.40
57 58 6.879400 ACTATAGCGACCTTTCTTCTGAAAT 58.121 36.000 0.00 0.00 40.85 2.17
58 59 6.071560 TGACTATAGCGACCTTTCTTCTGAAA 60.072 38.462 0.00 0.00 39.59 2.69
59 60 5.417894 TGACTATAGCGACCTTTCTTCTGAA 59.582 40.000 0.00 0.00 0.00 3.02
60 61 4.948004 TGACTATAGCGACCTTTCTTCTGA 59.052 41.667 0.00 0.00 0.00 3.27
61 62 5.163602 ACTGACTATAGCGACCTTTCTTCTG 60.164 44.000 0.00 0.00 0.00 3.02
62 63 4.951094 ACTGACTATAGCGACCTTTCTTCT 59.049 41.667 0.00 0.00 0.00 2.85
63 64 5.251601 ACTGACTATAGCGACCTTTCTTC 57.748 43.478 0.00 0.00 0.00 2.87
64 65 5.662674 AACTGACTATAGCGACCTTTCTT 57.337 39.130 0.00 0.00 0.00 2.52
65 66 5.662674 AAACTGACTATAGCGACCTTTCT 57.337 39.130 0.00 0.00 0.00 2.52
66 67 5.454877 CGTAAACTGACTATAGCGACCTTTC 59.545 44.000 0.00 0.00 0.00 2.62
67 68 5.124457 TCGTAAACTGACTATAGCGACCTTT 59.876 40.000 0.00 0.00 0.00 3.11
68 69 4.637534 TCGTAAACTGACTATAGCGACCTT 59.362 41.667 0.00 0.00 0.00 3.50
69 70 4.194640 TCGTAAACTGACTATAGCGACCT 58.805 43.478 0.00 0.00 0.00 3.85
70 71 4.542662 TCGTAAACTGACTATAGCGACC 57.457 45.455 0.00 0.00 0.00 4.79
71 72 4.839706 CGATCGTAAACTGACTATAGCGAC 59.160 45.833 7.03 0.00 0.00 5.19
72 73 4.509230 ACGATCGTAAACTGACTATAGCGA 59.491 41.667 21.32 0.00 0.00 4.93
73 74 4.770287 ACGATCGTAAACTGACTATAGCG 58.230 43.478 21.32 0.00 0.00 4.26
74 75 5.745514 TGACGATCGTAAACTGACTATAGC 58.254 41.667 22.79 3.74 0.00 2.97
75 76 5.846994 GCTGACGATCGTAAACTGACTATAG 59.153 44.000 22.79 0.00 0.00 1.31
76 77 5.526479 AGCTGACGATCGTAAACTGACTATA 59.474 40.000 22.79 0.00 0.00 1.31
77 78 4.335874 AGCTGACGATCGTAAACTGACTAT 59.664 41.667 22.79 0.00 0.00 2.12
78 79 3.688185 AGCTGACGATCGTAAACTGACTA 59.312 43.478 22.79 0.00 0.00 2.59
79 80 2.488545 AGCTGACGATCGTAAACTGACT 59.511 45.455 22.79 8.97 0.00 3.41
80 81 2.864968 AGCTGACGATCGTAAACTGAC 58.135 47.619 22.79 7.35 0.00 3.51
81 82 3.570926 AAGCTGACGATCGTAAACTGA 57.429 42.857 22.79 0.23 0.00 3.41
82 83 4.149922 TCAAAAGCTGACGATCGTAAACTG 59.850 41.667 22.79 13.68 0.00 3.16
83 84 4.150098 GTCAAAAGCTGACGATCGTAAACT 59.850 41.667 22.79 12.21 44.95 2.66
84 85 4.383679 GTCAAAAGCTGACGATCGTAAAC 58.616 43.478 22.79 9.65 44.95 2.01
85 86 4.640805 GTCAAAAGCTGACGATCGTAAA 57.359 40.909 22.79 11.82 44.95 2.01
117 118 8.833231 TTTAATTTGTGACCTTTTTGTGACAA 57.167 26.923 0.00 0.00 39.94 3.18
118 119 8.833231 TTTTAATTTGTGACCTTTTTGTGACA 57.167 26.923 0.00 0.00 30.29 3.58
138 139 9.083422 TGGTCACTGAATGGTCATTATTTTTAA 57.917 29.630 0.00 0.00 31.85 1.52
139 140 8.642935 TGGTCACTGAATGGTCATTATTTTTA 57.357 30.769 0.00 0.00 31.85 1.52
140 141 7.537596 TGGTCACTGAATGGTCATTATTTTT 57.462 32.000 0.00 0.00 31.85 1.94
141 142 7.537596 TTGGTCACTGAATGGTCATTATTTT 57.462 32.000 0.00 0.00 31.85 1.82
142 143 7.722949 ATTGGTCACTGAATGGTCATTATTT 57.277 32.000 0.00 0.00 31.85 1.40
143 144 8.055181 ACTATTGGTCACTGAATGGTCATTATT 58.945 33.333 0.00 0.00 31.85 1.40
144 145 7.500227 CACTATTGGTCACTGAATGGTCATTAT 59.500 37.037 0.00 0.00 31.85 1.28
145 146 6.823182 CACTATTGGTCACTGAATGGTCATTA 59.177 38.462 0.00 0.00 31.85 1.90
146 147 5.649395 CACTATTGGTCACTGAATGGTCATT 59.351 40.000 0.00 0.00 31.85 2.57
147 148 5.188434 CACTATTGGTCACTGAATGGTCAT 58.812 41.667 0.00 0.00 31.85 3.06
148 149 4.578871 CACTATTGGTCACTGAATGGTCA 58.421 43.478 0.00 0.00 0.00 4.02
149 150 3.375299 GCACTATTGGTCACTGAATGGTC 59.625 47.826 0.00 0.00 0.00 4.02
150 151 3.009473 AGCACTATTGGTCACTGAATGGT 59.991 43.478 0.00 0.00 0.00 3.55
151 152 3.376234 CAGCACTATTGGTCACTGAATGG 59.624 47.826 0.00 0.00 33.39 3.16
152 153 3.376234 CCAGCACTATTGGTCACTGAATG 59.624 47.826 0.00 0.00 33.39 2.67
153 154 3.009473 ACCAGCACTATTGGTCACTGAAT 59.991 43.478 0.00 0.00 45.67 2.57
154 155 2.371841 ACCAGCACTATTGGTCACTGAA 59.628 45.455 0.00 0.00 45.67 3.02
155 156 1.977854 ACCAGCACTATTGGTCACTGA 59.022 47.619 0.00 0.00 45.67 3.41
156 157 2.479566 ACCAGCACTATTGGTCACTG 57.520 50.000 0.00 0.00 45.67 3.66
176 177 9.708222 GCACTATAAGAAATATGTCAACTTGTG 57.292 33.333 0.00 0.76 0.00 3.33
177 178 9.448438 TGCACTATAAGAAATATGTCAACTTGT 57.552 29.630 0.00 0.00 0.00 3.16
183 184 9.612066 TGACATTGCACTATAAGAAATATGTCA 57.388 29.630 15.00 15.00 43.92 3.58
188 189 9.665719 TGACTTGACATTGCACTATAAGAAATA 57.334 29.630 0.00 0.00 0.00 1.40
189 190 8.565896 TGACTTGACATTGCACTATAAGAAAT 57.434 30.769 0.00 0.00 0.00 2.17
190 191 7.977789 TGACTTGACATTGCACTATAAGAAA 57.022 32.000 0.00 0.00 0.00 2.52
191 192 8.565896 AATGACTTGACATTGCACTATAAGAA 57.434 30.769 0.00 0.00 38.76 2.52
192 193 7.823799 TGAATGACTTGACATTGCACTATAAGA 59.176 33.333 3.37 0.00 40.03 2.10
193 194 7.977904 TGAATGACTTGACATTGCACTATAAG 58.022 34.615 3.37 0.00 40.03 1.73
194 195 7.607607 ACTGAATGACTTGACATTGCACTATAA 59.392 33.333 3.37 0.00 40.03 0.98
195 196 7.105588 ACTGAATGACTTGACATTGCACTATA 58.894 34.615 3.37 0.00 40.03 1.31
196 197 5.942236 ACTGAATGACTTGACATTGCACTAT 59.058 36.000 3.37 0.00 40.03 2.12
197 198 5.308014 ACTGAATGACTTGACATTGCACTA 58.692 37.500 3.37 0.00 40.03 2.74
198 199 4.139786 ACTGAATGACTTGACATTGCACT 58.860 39.130 3.37 0.00 40.03 4.40
199 200 4.470462 GACTGAATGACTTGACATTGCAC 58.530 43.478 3.37 0.00 40.03 4.57
200 201 3.503363 GGACTGAATGACTTGACATTGCA 59.497 43.478 3.37 0.00 40.03 4.08
228 229 2.433664 GTGGTGTCCGCCTTACCG 60.434 66.667 0.00 0.00 37.29 4.02
230 231 0.953960 CCTTGTGGTGTCCGCCTTAC 60.954 60.000 0.00 0.00 32.22 2.34
262 263 2.125106 AATGCCCGTCTTCGCCTC 60.125 61.111 0.00 0.00 35.54 4.70
275 295 3.499737 CCTCCGCCGTGTCAATGC 61.500 66.667 0.00 0.00 0.00 3.56
285 305 0.250513 CTTAGCCATATCCCTCCGCC 59.749 60.000 0.00 0.00 0.00 6.13
286 306 0.391793 GCTTAGCCATATCCCTCCGC 60.392 60.000 0.00 0.00 0.00 5.54
321 341 1.462238 AAGGGGAGGGCGATATGCT 60.462 57.895 0.00 0.00 45.43 3.79
322 342 1.003233 GAAGGGGAGGGCGATATGC 60.003 63.158 0.00 0.00 45.38 3.14
362 382 2.102420 TCCATGAGCTTGGTGTATACGG 59.898 50.000 4.36 0.00 38.01 4.02
364 384 4.672587 TCTCCATGAGCTTGGTGTATAC 57.327 45.455 4.36 0.00 38.01 1.47
366 386 3.776969 TCTTCTCCATGAGCTTGGTGTAT 59.223 43.478 4.36 0.00 38.01 2.29
395 415 0.992802 GCAATGGTCGTCGTCTTCTC 59.007 55.000 0.00 0.00 0.00 2.87
397 417 0.716108 CTGCAATGGTCGTCGTCTTC 59.284 55.000 0.00 0.00 0.00 2.87
405 425 0.804364 TTAAGCTGCTGCAATGGTCG 59.196 50.000 18.42 0.00 42.74 4.79
426 446 2.504274 AAGTCGCGAACCACCTCCA 61.504 57.895 12.06 0.00 0.00 3.86
442 462 2.295253 AATTACCTCCGCGAGTCAAG 57.705 50.000 8.23 0.00 0.00 3.02
452 473 4.353383 AAGCTCCCGATTAATTACCTCC 57.647 45.455 0.00 0.00 0.00 4.30
454 475 4.814771 CGAAAAGCTCCCGATTAATTACCT 59.185 41.667 0.00 0.00 0.00 3.08
455 476 4.812626 TCGAAAAGCTCCCGATTAATTACC 59.187 41.667 0.00 0.00 0.00 2.85
456 477 5.050295 CCTCGAAAAGCTCCCGATTAATTAC 60.050 44.000 5.69 0.00 0.00 1.89
458 479 3.877508 CCTCGAAAAGCTCCCGATTAATT 59.122 43.478 5.69 0.00 0.00 1.40
465 486 2.820037 GGCCTCGAAAAGCTCCCG 60.820 66.667 0.00 0.00 0.00 5.14
466 487 2.041115 GTGGCCTCGAAAAGCTCCC 61.041 63.158 3.32 0.00 0.00 4.30
474 495 0.389817 CTGATTCACGTGGCCTCGAA 60.390 55.000 32.11 17.81 34.70 3.71
483 504 3.685139 ATGTGAGGTTCTGATTCACGT 57.315 42.857 10.73 8.65 43.12 4.49
490 511 0.389817 CGGCGAATGTGAGGTTCTGA 60.390 55.000 0.00 0.00 0.00 3.27
491 512 0.389817 TCGGCGAATGTGAGGTTCTG 60.390 55.000 7.35 0.00 0.00 3.02
507 528 1.875963 GTGCCCAATGTGACTTCGG 59.124 57.895 0.00 0.00 0.00 4.30
509 530 1.210155 GCGTGCCCAATGTGACTTC 59.790 57.895 0.00 0.00 0.00 3.01
535 556 0.463295 ATGAAGGATGCGCTCTGTGG 60.463 55.000 9.73 0.00 0.00 4.17
631 652 2.685897 GCGGGCATGAAAATGTACCTAA 59.314 45.455 0.00 0.00 0.00 2.69
642 663 0.600557 AAACGAAATGCGGGCATGAA 59.399 45.000 6.95 0.00 46.49 2.57
643 664 0.600557 AAAACGAAATGCGGGCATGA 59.399 45.000 6.95 0.00 46.49 3.07
653 674 7.972623 TGACACGACAAAATAAAAACGAAAT 57.027 28.000 0.00 0.00 0.00 2.17
656 677 6.800408 TGTTTGACACGACAAAATAAAAACGA 59.200 30.769 0.00 0.00 40.62 3.85
724 745 1.466950 CACGTGCGACCCATTAAACAT 59.533 47.619 0.82 0.00 0.00 2.71
753 774 3.106986 GCCTATGGCTCCCTCGCAA 62.107 63.158 0.73 0.00 46.69 4.85
772 793 3.328343 TGACCGGGAATAGTTGAGGAAAA 59.672 43.478 6.32 0.00 0.00 2.29
791 813 5.357257 ACACGTCCTATTCCACATATTGAC 58.643 41.667 0.00 0.00 0.00 3.18
829 856 0.654683 CTATTCCTTGCAGCGTCAGC 59.345 55.000 0.00 0.00 45.58 4.26
830 857 1.662629 CACTATTCCTTGCAGCGTCAG 59.337 52.381 0.00 0.00 0.00 3.51
831 858 1.675714 CCACTATTCCTTGCAGCGTCA 60.676 52.381 0.00 0.00 0.00 4.35
832 859 1.009829 CCACTATTCCTTGCAGCGTC 58.990 55.000 0.00 0.00 0.00 5.19
888 915 3.440228 CTCGTGTCCTAGCTAGCTTTTC 58.560 50.000 24.88 11.66 0.00 2.29
889 916 2.166664 CCTCGTGTCCTAGCTAGCTTTT 59.833 50.000 24.88 0.39 0.00 2.27
914 949 1.522569 CGAGGGTTTAGCTGGAGGG 59.477 63.158 0.00 0.00 0.00 4.30
973 1014 1.985116 GGCGGGAGGAAGAGACAGT 60.985 63.158 0.00 0.00 0.00 3.55
975 1016 2.683933 GGGCGGGAGGAAGAGACA 60.684 66.667 0.00 0.00 0.00 3.41
1009 1060 4.562143 GGAGAGGAAACTTACGGTTAGCAA 60.562 45.833 0.00 0.00 44.43 3.91
1011 1062 3.056322 TGGAGAGGAAACTTACGGTTAGC 60.056 47.826 0.00 0.00 44.43 3.09
1025 1076 2.461695 GTTCAGAGTGGATGGAGAGGA 58.538 52.381 0.00 0.00 0.00 3.71
1036 1087 3.404773 GGGGGAGGGTTCAGAGTG 58.595 66.667 0.00 0.00 0.00 3.51
1052 1114 2.843113 AGAGATGAAAGGAGGAACAGGG 59.157 50.000 0.00 0.00 0.00 4.45
1054 1116 4.934602 GTGAAGAGATGAAAGGAGGAACAG 59.065 45.833 0.00 0.00 0.00 3.16
1103 1165 0.442310 TATTTGAAGCTCGTGCGCAC 59.558 50.000 30.42 30.42 45.42 5.34
1104 1166 0.442310 GTATTTGAAGCTCGTGCGCA 59.558 50.000 5.66 5.66 45.42 6.09
1122 1184 1.301479 GCGAACGGTTCCTTGAGGT 60.301 57.895 14.83 0.00 36.34 3.85
1145 1207 0.391661 TCTGAGCAACCAAGCGGATC 60.392 55.000 0.00 0.00 40.15 3.36
1149 1211 0.725686 CAGATCTGAGCAACCAAGCG 59.274 55.000 18.34 0.00 40.15 4.68
1154 1216 2.008329 CTCAAGCAGATCTGAGCAACC 58.992 52.381 27.04 7.27 0.00 3.77
1230 1292 5.510349 CCACTGCTGATATATAGCACACACT 60.510 44.000 9.44 0.00 45.52 3.55
1385 1645 7.968405 GTGTTGAAATAAGTAATGTGATCCCAC 59.032 37.037 0.00 0.00 43.46 4.61
1388 1648 8.946085 TGAGTGTTGAAATAAGTAATGTGATCC 58.054 33.333 0.00 0.00 0.00 3.36
1448 1875 4.492160 GCGAGTCGGCGACCATGA 62.492 66.667 34.04 0.00 32.18 3.07
1491 1918 6.936900 ACTGCTCAAAAAGAGTATTCAAGCTA 59.063 34.615 0.00 0.00 46.47 3.32
1496 1923 9.507329 AGATAAACTGCTCAAAAAGAGTATTCA 57.493 29.630 0.00 0.00 46.47 2.57
1497 1924 9.980780 GAGATAAACTGCTCAAAAAGAGTATTC 57.019 33.333 0.00 0.00 46.47 1.75
1595 2022 3.627123 CCAATAGGACATGATTGTTGCGA 59.373 43.478 0.00 0.00 35.79 5.10
1602 2029 4.352009 TGCCAAACCAATAGGACATGATT 58.648 39.130 0.00 0.00 38.69 2.57
1606 2033 2.042979 ACCTGCCAAACCAATAGGACAT 59.957 45.455 0.00 0.00 38.69 3.06
1623 2050 6.506500 ACTTTCATCATCAGCTAAAACCTG 57.493 37.500 0.00 0.00 0.00 4.00
1651 2078 9.625747 TTGATCTAACATTATAGCCAATTGTGA 57.374 29.630 4.43 0.00 0.00 3.58
1685 2112 2.484264 GCACGAAGGCTAACTTGATTGT 59.516 45.455 0.00 0.00 40.21 2.71
1741 2168 4.541973 AAGGAATCCTGCAAAATTGGAC 57.458 40.909 0.90 0.00 32.13 4.02
1771 2199 0.683179 TCTTGAGGAATCTCGCCGGA 60.683 55.000 5.05 0.00 42.79 5.14
1817 2245 3.014092 ATCAGAGGCGTCTAGCTGATGT 61.014 50.000 17.64 0.00 44.08 3.06
1825 2253 6.482308 GCCTTTTAAATTATCAGAGGCGTCTA 59.518 38.462 8.91 0.00 38.83 2.59
1826 2254 5.297029 GCCTTTTAAATTATCAGAGGCGTCT 59.703 40.000 2.32 2.32 38.83 4.18
1856 2284 1.210155 GACGGCATGCACCTTGTTC 59.790 57.895 21.36 0.00 0.00 3.18
1859 2287 0.108186 TAGAGACGGCATGCACCTTG 60.108 55.000 21.36 5.82 0.00 3.61
1871 2299 3.011119 AGCTTGGACACTAGTAGAGACG 58.989 50.000 3.59 0.00 0.00 4.18
1898 2336 1.764571 TTGGTTGTGTCGGCCTAGCT 61.765 55.000 0.00 0.00 0.00 3.32
1899 2337 1.298859 CTTGGTTGTGTCGGCCTAGC 61.299 60.000 0.00 0.00 0.00 3.42
1902 2340 2.113139 CCTTGGTTGTGTCGGCCT 59.887 61.111 0.00 0.00 0.00 5.19
1907 2345 2.038387 ATATCGGCCTTGGTTGTGTC 57.962 50.000 0.00 0.00 0.00 3.67
1909 2347 3.738982 TGATATATCGGCCTTGGTTGTG 58.261 45.455 8.19 0.00 0.00 3.33
1912 2350 4.706842 AACTGATATATCGGCCTTGGTT 57.293 40.909 19.60 4.56 36.64 3.67
1915 2353 4.216257 CCCAAAACTGATATATCGGCCTTG 59.784 45.833 19.60 19.82 36.64 3.61
1918 2356 3.081804 CCCCAAAACTGATATATCGGCC 58.918 50.000 19.60 0.00 36.64 6.13
1919 2357 2.488153 GCCCCAAAACTGATATATCGGC 59.512 50.000 19.60 13.30 36.64 5.54
1920 2358 4.021102 AGCCCCAAAACTGATATATCGG 57.979 45.455 18.34 18.34 39.11 4.18
1921 2359 6.710744 AGTAAAGCCCCAAAACTGATATATCG 59.289 38.462 8.19 5.77 0.00 2.92
1922 2360 7.719633 TCAGTAAAGCCCCAAAACTGATATATC 59.280 37.037 5.73 5.73 41.09 1.63
1924 2362 6.964464 TCAGTAAAGCCCCAAAACTGATATA 58.036 36.000 0.00 0.00 41.09 0.86
1925 2363 5.826643 TCAGTAAAGCCCCAAAACTGATAT 58.173 37.500 0.00 0.00 41.09 1.63
1999 2442 5.123979 CGGGTCAGATATCAGTCAATATCGA 59.876 44.000 5.32 0.00 41.51 3.59
2010 2453 3.694566 CGGTCATATCGGGTCAGATATCA 59.305 47.826 5.32 0.00 40.68 2.15
2032 2496 2.159734 CGACGTACCGGTCTATATCAGC 60.160 54.545 12.40 0.00 34.75 4.26
2160 2624 9.936329 AGAAACTATCCTAGAAAGATTCTCTCT 57.064 33.333 0.00 0.00 41.14 3.10
2242 2731 8.233692 TCAAAAATGTAAAACCGAATGTATGC 57.766 30.769 0.00 0.00 0.00 3.14
2251 2740 7.707774 ATTCAGGTTCAAAAATGTAAAACCG 57.292 32.000 0.00 0.00 43.28 4.44
2328 2826 7.957002 GGATGTCAGATATCCGGTGATATATT 58.043 38.462 10.27 0.00 42.87 1.28
2339 2837 6.127338 TGGAACATATCGGATGTCAGATATCC 60.127 42.308 14.90 14.90 40.21 2.59
2346 2844 4.875536 CAGTTTGGAACATATCGGATGTCA 59.124 41.667 0.00 0.00 39.30 3.58
2378 2880 8.970020 AGCAAGGTTCAAAATATCATATGTTGA 58.030 29.630 6.20 6.20 39.12 3.18
2435 2940 6.694411 GCAACATCACATGATTATTCTGAACC 59.306 38.462 0.00 0.00 31.21 3.62
2436 2941 7.478322 AGCAACATCACATGATTATTCTGAAC 58.522 34.615 0.00 0.00 31.21 3.18
2480 2989 6.198237 AGCTATTAGGCTCTTGATTCCATT 57.802 37.500 0.00 0.00 38.24 3.16
2595 3115 9.915629 ACGAGATTCCATTATTACTATGAGAAC 57.084 33.333 0.00 0.00 0.00 3.01
2660 3180 2.222886 TGGCGCTTGCTTTTGTAACTA 58.777 42.857 7.64 0.00 39.13 2.24
2889 3431 8.827677 AGAATATCCGTCTTTTAGTTTATGCAC 58.172 33.333 0.00 0.00 0.00 4.57
2995 3539 5.424757 TGTTCCCTTAATTGATCTACCACG 58.575 41.667 0.00 0.00 0.00 4.94
3048 3592 4.051237 GGCAAGAGATTGGAAACACAAAC 58.949 43.478 0.00 0.00 42.67 2.93
3919 4677 6.078202 TGTTGAACCGCATCTTTGAAAATA 57.922 33.333 0.00 0.00 0.00 1.40
3996 4758 3.296322 TTTCGATGCATTTTCCCACAC 57.704 42.857 0.00 0.00 0.00 3.82
4057 4845 2.417924 CCGCTCTTGTATCTCAGCAAGT 60.418 50.000 0.00 0.00 41.83 3.16
4058 4846 2.200067 CCGCTCTTGTATCTCAGCAAG 58.800 52.381 0.00 0.00 42.32 4.01
4174 4969 6.887626 AATATGTTCACATATGCATGCTGA 57.112 33.333 20.33 10.93 45.85 4.26
4177 4972 6.684686 AGGAAATATGTTCACATATGCATGC 58.315 36.000 11.82 11.82 45.85 4.06
4202 5256 5.888161 CAGGAATATCTACAAGCCAAAACCT 59.112 40.000 0.00 0.00 0.00 3.50
4330 5659 3.254903 GCGACACTTTTATTTTGGGACCT 59.745 43.478 0.00 0.00 0.00 3.85
4331 5660 3.254903 AGCGACACTTTTATTTTGGGACC 59.745 43.478 0.00 0.00 0.00 4.46
4345 5674 4.645136 TCCATCTACTAAATCAGCGACACT 59.355 41.667 0.00 0.00 0.00 3.55
4348 5677 5.189659 ACTCCATCTACTAAATCAGCGAC 57.810 43.478 0.00 0.00 0.00 5.19
4349 5678 6.954487 TTACTCCATCTACTAAATCAGCGA 57.046 37.500 0.00 0.00 0.00 4.93
4365 6012 8.716674 ATCGGTTAGGTCTATTTATTACTCCA 57.283 34.615 0.00 0.00 0.00 3.86
4439 6090 1.959282 AGCCTTTGAAACCTTGCAGAG 59.041 47.619 0.00 0.00 0.00 3.35
4461 6112 4.394795 CAAACTTTGCTGTATGTAGTCGC 58.605 43.478 0.00 0.00 0.00 5.19
4561 6218 2.415168 CAGCACGACGATAACCACAATT 59.585 45.455 0.00 0.00 0.00 2.32
4564 6221 0.389296 CCAGCACGACGATAACCACA 60.389 55.000 0.00 0.00 0.00 4.17
4632 6303 7.708322 CAGCAACCACGATATATATATTCTGCT 59.292 37.037 6.69 10.77 0.00 4.24
4673 6344 6.352516 ACCTGGATGCTCTCTTATTGTAAAG 58.647 40.000 0.00 0.00 0.00 1.85
4705 6376 5.300792 GGACCTGACCATACAAACTGAAAAA 59.699 40.000 0.00 0.00 0.00 1.94
4722 6393 4.168101 ACTCTTCCAAATACAGGACCTGA 58.832 43.478 28.56 11.96 34.19 3.86
4752 6423 0.830648 TAGAGGGGCCTTCGTCATTG 59.169 55.000 10.30 0.00 0.00 2.82
4783 6455 1.089920 GTGTGTAGGCAGGCTTGATG 58.910 55.000 0.00 0.00 0.00 3.07
4784 6456 0.692476 TGTGTGTAGGCAGGCTTGAT 59.308 50.000 0.00 0.00 0.00 2.57
4791 6463 0.952497 CCTGTGCTGTGTGTAGGCAG 60.952 60.000 0.00 0.00 36.62 4.85
4805 6477 4.141846 ACTGGCATTCTATCTGTACCTGTG 60.142 45.833 0.00 0.00 0.00 3.66
4816 6488 2.035961 ACGCATCGTACTGGCATTCTAT 59.964 45.455 0.00 0.00 38.73 1.98
4831 6503 1.421485 CGGCTTGTGAGAACGCATC 59.579 57.895 0.00 0.00 36.39 3.91
4836 6508 1.503542 CATGCCGGCTTGTGAGAAC 59.496 57.895 29.15 0.00 0.00 3.01
4917 6597 6.375455 TCATTTTCAGGAATAGAGTTGCTTCC 59.625 38.462 0.00 0.00 38.99 3.46
4990 6675 9.331282 CTTTCCCCTATTATTTCTGTCTTGTAG 57.669 37.037 0.00 0.00 0.00 2.74
5003 6688 9.642343 GTTCCAGTATTTTCTTTCCCCTATTAT 57.358 33.333 0.00 0.00 0.00 1.28
5007 6692 6.713731 AGTTCCAGTATTTTCTTTCCCCTA 57.286 37.500 0.00 0.00 0.00 3.53
5008 6693 5.600669 AGTTCCAGTATTTTCTTTCCCCT 57.399 39.130 0.00 0.00 0.00 4.79
5010 6695 6.490381 AGTGAAGTTCCAGTATTTTCTTTCCC 59.510 38.462 0.00 0.00 0.00 3.97
5012 6697 7.379797 GCAAGTGAAGTTCCAGTATTTTCTTTC 59.620 37.037 0.00 0.00 0.00 2.62
5013 6698 7.203218 GCAAGTGAAGTTCCAGTATTTTCTTT 58.797 34.615 0.00 0.00 0.00 2.52
5040 6727 1.335872 CGGTCCAAAATGTGCAGGTTC 60.336 52.381 0.00 0.00 0.00 3.62
5041 6728 0.673437 CGGTCCAAAATGTGCAGGTT 59.327 50.000 0.00 0.00 0.00 3.50
5042 6729 1.805428 GCGGTCCAAAATGTGCAGGT 61.805 55.000 0.00 0.00 0.00 4.00
5043 6730 1.080569 GCGGTCCAAAATGTGCAGG 60.081 57.895 0.00 0.00 0.00 4.85
5044 6731 1.442520 CGCGGTCCAAAATGTGCAG 60.443 57.895 0.00 0.00 0.00 4.41
5045 6732 2.123988 GACGCGGTCCAAAATGTGCA 62.124 55.000 12.47 0.00 0.00 4.57
5046 6733 1.442017 GACGCGGTCCAAAATGTGC 60.442 57.895 12.47 0.00 0.00 4.57
5047 6734 1.154488 CGACGCGGTCCAAAATGTG 60.154 57.895 12.47 0.00 0.00 3.21
5048 6735 1.562575 GACGACGCGGTCCAAAATGT 61.563 55.000 12.47 0.00 0.00 2.71
5049 6736 1.131826 GACGACGCGGTCCAAAATG 59.868 57.895 12.47 0.00 0.00 2.32
5050 6737 1.005394 AGACGACGCGGTCCAAAAT 60.005 52.632 12.47 0.00 37.66 1.82
5051 6738 1.662446 GAGACGACGCGGTCCAAAA 60.662 57.895 12.47 0.00 37.66 2.44
5052 6739 2.049802 GAGACGACGCGGTCCAAA 60.050 61.111 12.47 0.00 37.66 3.28
5053 6740 4.047059 GGAGACGACGCGGTCCAA 62.047 66.667 12.47 0.00 37.66 3.53
5055 6742 4.176851 GAGGAGACGACGCGGTCC 62.177 72.222 12.47 8.33 37.66 4.46
5056 6743 4.176851 GGAGGAGACGACGCGGTC 62.177 72.222 12.47 9.46 37.19 4.79
5217 6908 3.458163 CGAGGCCCTCCACGCTAA 61.458 66.667 4.85 0.00 39.43 3.09
5324 7110 2.927856 ACCAGCGACCATGGACCA 60.928 61.111 21.47 0.00 40.51 4.02
5582 7369 3.281787 AGGGGACGGAAGGAGGGA 61.282 66.667 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.