Multiple sequence alignment - TraesCS5B01G034200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G034200 chr5B 100.000 6080 0 0 1 6080 37060794 37054715 0.000000e+00 11228.0
1 TraesCS5B01G034200 chr5B 92.125 3162 216 15 828 3964 55625385 55622232 0.000000e+00 4429.0
2 TraesCS5B01G034200 chr5B 91.801 683 30 7 4535 5211 55621707 55621045 0.000000e+00 928.0
3 TraesCS5B01G034200 chr5B 91.957 460 27 7 4093 4546 55622181 55621726 2.390000e-178 636.0
4 TraesCS5B01G034200 chr5B 96.113 283 9 2 5798 6080 87139205 87139485 1.540000e-125 460.0
5 TraesCS5B01G034200 chr5B 82.672 479 21 22 369 800 55626065 55625602 9.630000e-98 368.0
6 TraesCS5B01G034200 chr5B 91.286 241 18 2 5798 6037 655210811 655211049 5.880000e-85 326.0
7 TraesCS5B01G034200 chr5B 78.417 417 38 26 2 370 55626606 55626194 2.210000e-54 224.0
8 TraesCS5B01G034200 chr5B 92.701 137 6 3 5903 6037 333192191 333192057 1.730000e-45 195.0
9 TraesCS5B01G034200 chr5B 85.093 161 17 5 3599 3754 55622747 55622589 2.270000e-34 158.0
10 TraesCS5B01G034200 chr5B 89.216 102 9 2 3999 4099 140966020 140965920 6.400000e-25 126.0
11 TraesCS5B01G034200 chr5B 98.182 55 1 0 5744 5798 87139072 87139126 5.020000e-16 97.1
12 TraesCS5B01G034200 chr5B 98.182 55 1 0 5744 5798 655210677 655210731 5.020000e-16 97.1
13 TraesCS5B01G034200 chr5B 89.041 73 4 4 6008 6079 425181515 425181584 3.020000e-13 87.9
14 TraesCS5B01G034200 chr5B 93.220 59 2 2 6024 6080 333191934 333191876 1.090000e-12 86.1
15 TraesCS5B01G034200 chr5D 97.423 3104 75 3 830 3930 42555121 42558222 0.000000e+00 5284.0
16 TraesCS5B01G034200 chr5D 92.220 3162 213 16 828 3964 52617479 52614326 0.000000e+00 4446.0
17 TraesCS5B01G034200 chr5D 88.595 2718 242 30 834 3520 15352551 15355231 0.000000e+00 3240.0
18 TraesCS5B01G034200 chr5D 90.789 988 74 9 2556 3527 15128904 15129890 0.000000e+00 1304.0
19 TraesCS5B01G034200 chr5D 92.771 830 21 9 1 805 42554051 42554866 0.000000e+00 1164.0
20 TraesCS5B01G034200 chr5D 86.595 1022 131 3 1026 2044 15103070 15104088 0.000000e+00 1123.0
21 TraesCS5B01G034200 chr5D 95.827 647 18 2 4535 5181 42558766 42559403 0.000000e+00 1037.0
22 TraesCS5B01G034200 chr5D 94.797 615 22 6 3933 4543 42558127 42558735 0.000000e+00 950.0
23 TraesCS5B01G034200 chr5D 94.412 519 26 3 5226 5743 42231154 42230638 0.000000e+00 795.0
24 TraesCS5B01G034200 chr5D 92.996 514 36 0 2049 2562 15126696 15127209 0.000000e+00 750.0
25 TraesCS5B01G034200 chr5D 91.828 465 25 9 4093 4546 52614187 52613725 2.390000e-178 636.0
26 TraesCS5B01G034200 chr5D 91.195 477 22 7 4743 5211 52605600 52605136 1.110000e-176 630.0
27 TraesCS5B01G034200 chr5D 78.811 774 64 43 111 800 52618508 52617751 4.350000e-116 429.0
28 TraesCS5B01G034200 chr5D 95.055 182 7 2 4535 4715 52613706 52613526 9.970000e-73 285.0
29 TraesCS5B01G034200 chr5D 83.986 281 24 10 4947 5211 15216397 15216672 3.640000e-62 250.0
30 TraesCS5B01G034200 chr5D 85.714 161 16 5 3599 3754 52614841 52614683 4.880000e-36 163.0
31 TraesCS5B01G034200 chr5D 85.821 134 11 5 2 127 52618652 52618519 1.060000e-27 135.0
32 TraesCS5B01G034200 chr5D 88.571 105 10 2 3999 4102 128577678 128577575 6.400000e-25 126.0
33 TraesCS5B01G034200 chr5D 97.778 45 1 0 3963 4007 52614233 52614189 1.820000e-10 78.7
34 TraesCS5B01G034200 chr5D 93.478 46 2 1 3864 3909 52614233 52614189 3.930000e-07 67.6
35 TraesCS5B01G034200 chr5A 93.858 521 27 4 828 1347 41708705 41708189 0.000000e+00 780.0
36 TraesCS5B01G034200 chr5A 84.825 257 12 10 561 800 41709209 41708963 3.660000e-57 233.0
37 TraesCS5B01G034200 chr5A 94.624 93 5 0 478 570 41709322 41709230 1.770000e-30 145.0
38 TraesCS5B01G034200 chr1A 72.353 1483 337 53 1008 2446 392529817 392528364 3.410000e-107 399.0
39 TraesCS5B01G034200 chr1A 93.478 92 5 1 3999 4089 530756665 530756574 1.060000e-27 135.0
40 TraesCS5B01G034200 chr1A 100.000 28 0 0 3904 3931 323287937 323287964 1.100000e-02 52.8
41 TraesCS5B01G034200 chr1B 72.267 1482 340 51 1008 2446 423209932 423208479 1.590000e-105 394.0
42 TraesCS5B01G034200 chr1B 90.511 137 10 2 5902 6037 539601032 539601166 1.740000e-40 178.0
43 TraesCS5B01G034200 chr1D 72.132 1482 342 51 1008 2446 312973483 312972030 3.440000e-102 383.0
44 TraesCS5B01G034200 chr4B 90.041 241 21 2 5798 6037 440918859 440918621 5.920000e-80 309.0
45 TraesCS5B01G034200 chr2B 88.393 224 17 4 5816 6037 649944750 649944966 1.680000e-65 261.0
46 TraesCS5B01G034200 chr2B 94.915 59 1 2 6024 6080 649945091 649945149 2.330000e-14 91.6
47 TraesCS5B01G034200 chr2B 94.545 55 3 0 5744 5798 649944610 649944664 1.090000e-12 86.1
48 TraesCS5B01G034200 chr2B 93.103 58 2 2 6024 6079 773007100 773007157 3.910000e-12 84.2
49 TraesCS5B01G034200 chr2B 91.379 58 3 2 6024 6080 567982667 567982723 1.820000e-10 78.7
50 TraesCS5B01G034200 chr3D 75.785 446 102 6 2003 2445 432135149 432135591 2.850000e-53 220.0
51 TraesCS5B01G034200 chr3B 75.281 445 106 4 2003 2445 564319144 564319586 6.180000e-50 209.0
52 TraesCS5B01G034200 chr6B 89.855 138 10 2 5902 6038 6612713 6612847 2.250000e-39 174.0
53 TraesCS5B01G034200 chr6B 89.209 139 7 5 5902 6037 589049681 589049814 3.770000e-37 167.0
54 TraesCS5B01G034200 chr6B 89.051 137 10 3 5902 6037 6667837 6667705 1.360000e-36 165.0
55 TraesCS5B01G034200 chr6B 95.918 49 1 1 6024 6071 589049937 589049985 1.820000e-10 78.7
56 TraesCS5B01G034200 chr7D 91.089 101 8 1 4000 4099 167548415 167548515 1.060000e-27 135.0
57 TraesCS5B01G034200 chr7D 90.099 101 9 1 4000 4099 167548509 167548409 4.950000e-26 130.0
58 TraesCS5B01G034200 chr7D 96.774 31 1 0 3900 3930 604995492 604995522 1.100000e-02 52.8
59 TraesCS5B01G034200 chr6A 95.349 86 3 1 4004 4088 584511447 584511362 1.060000e-27 135.0
60 TraesCS5B01G034200 chr6A 96.226 53 2 0 5746 5798 615622999 615623051 3.020000e-13 87.9
61 TraesCS5B01G034200 chr2A 93.333 90 5 1 4000 4088 483604566 483604655 1.380000e-26 132.0
62 TraesCS5B01G034200 chr2A 94.545 55 3 0 5744 5798 10371751 10371697 1.090000e-12 86.1
63 TraesCS5B01G034200 chr2D 90.816 98 7 2 4003 4099 302248099 302248003 4.950000e-26 130.0
64 TraesCS5B01G034200 chr6D 96.364 55 2 0 5744 5798 83282810 83282756 2.330000e-14 91.6
65 TraesCS5B01G034200 chr6D 94.643 56 1 2 5744 5798 126628930 126628876 1.090000e-12 86.1
66 TraesCS5B01G034200 chr3A 96.364 55 2 0 5744 5798 767696 767750 2.330000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G034200 chr5B 37054715 37060794 6079 True 11228.000000 11228 100.000000 1 6080 1 chr5B.!!$R1 6079
1 TraesCS5B01G034200 chr5B 55621045 55626606 5561 True 1123.833333 4429 87.010833 2 5211 6 chr5B.!!$R3 5209
2 TraesCS5B01G034200 chr5D 15352551 15355231 2680 False 3240.000000 3240 88.595000 834 3520 1 chr5D.!!$F3 2686
3 TraesCS5B01G034200 chr5D 42554051 42559403 5352 False 2108.750000 5284 95.204500 1 5181 4 chr5D.!!$F5 5180
4 TraesCS5B01G034200 chr5D 15103070 15104088 1018 False 1123.000000 1123 86.595000 1026 2044 1 chr5D.!!$F1 1018
5 TraesCS5B01G034200 chr5D 15126696 15129890 3194 False 1027.000000 1304 91.892500 2049 3527 2 chr5D.!!$F4 1478
6 TraesCS5B01G034200 chr5D 42230638 42231154 516 True 795.000000 795 94.412000 5226 5743 1 chr5D.!!$R1 517
7 TraesCS5B01G034200 chr5D 52613526 52618652 5126 True 780.037500 4446 90.088125 2 4715 8 chr5D.!!$R4 4713
8 TraesCS5B01G034200 chr5A 41708189 41709322 1133 True 386.000000 780 91.102333 478 1347 3 chr5A.!!$R1 869
9 TraesCS5B01G034200 chr1A 392528364 392529817 1453 True 399.000000 399 72.353000 1008 2446 1 chr1A.!!$R1 1438
10 TraesCS5B01G034200 chr1B 423208479 423209932 1453 True 394.000000 394 72.267000 1008 2446 1 chr1B.!!$R1 1438
11 TraesCS5B01G034200 chr1D 312972030 312973483 1453 True 383.000000 383 72.132000 1008 2446 1 chr1D.!!$R1 1438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 238 0.179171 CGTACCCTGACTACGCACAG 60.179 60.000 0.00 0.00 31.32 3.66 F
805 1099 1.134788 ACCTTGCCGTATACTCAGCAC 60.135 52.381 10.52 0.00 34.37 4.40 F
1419 1953 0.248621 GATTACTGCGCAACATGGCC 60.249 55.000 13.05 0.00 0.00 5.36 F
1924 2477 0.704551 GCGTTTTGCTCATGCTTTCG 59.295 50.000 0.00 0.00 41.73 3.46 F
3288 5587 0.947244 GACAGGGAATATGCAAGGCG 59.053 55.000 0.00 0.00 0.00 5.52 F
3894 6198 0.110486 TGAGGAAAGGTTGGCAGACC 59.890 55.000 9.86 9.86 40.11 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1689 1.065926 CCAGCAAGGTATCTGCACTCA 60.066 52.381 0.00 0.0 0.00 3.41 R
2748 5023 0.035317 ACAGCAACGCCTGAAGATCA 59.965 50.000 0.00 0.0 36.67 2.92 R
2848 5123 0.381801 ACACGGCAAAACTGAAGCAG 59.618 50.000 0.00 0.0 37.52 4.24 R
3875 6179 0.110486 GGTCTGCCAACCTTTCCTCA 59.890 55.000 0.00 0.0 36.32 3.86 R
4988 7455 0.034756 AACTGCAGCGTATGTCACCA 59.965 50.000 15.27 0.0 0.00 4.17 R
5826 8299 0.039978 CAGCAGTAGTCGATAGCCCG 60.040 60.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.253327 ACGGCATTCCTTCCTTCTCC 59.747 55.000 0.00 0.00 0.00 3.71
158 209 4.567857 AGGGCCTTCTGGTTATATACAGT 58.432 43.478 0.00 0.00 36.17 3.55
159 210 5.723355 AGGGCCTTCTGGTTATATACAGTA 58.277 41.667 0.00 0.00 36.17 2.74
160 211 6.331846 AGGGCCTTCTGGTTATATACAGTAT 58.668 40.000 0.00 0.00 36.17 2.12
161 212 6.440965 AGGGCCTTCTGGTTATATACAGTATC 59.559 42.308 0.00 0.00 36.17 2.24
164 215 9.203163 GGCCTTCTGGTTATATACAGTATCTAT 57.797 37.037 0.00 0.00 36.17 1.98
187 238 0.179171 CGTACCCTGACTACGCACAG 60.179 60.000 0.00 0.00 31.32 3.66
314 388 9.626045 CACCAAGGAATTTATTTACTTTCTCAC 57.374 33.333 0.00 0.00 0.00 3.51
470 697 8.531622 TTTTACATGTTGAAATAATGCACTGG 57.468 30.769 2.30 0.00 0.00 4.00
491 722 8.604035 CACTGGTCAAAGTATATATGTTGTGTC 58.396 37.037 0.00 0.00 0.00 3.67
605 868 4.191544 CACATAAAGGCTGTTAGCTAGCA 58.808 43.478 18.83 10.09 42.88 3.49
681 944 5.475719 TCAGTAAGTTCTTGGGTTACATCG 58.524 41.667 0.00 0.00 0.00 3.84
685 965 3.170717 AGTTCTTGGGTTACATCGGAGA 58.829 45.455 0.00 0.00 45.75 3.71
790 1070 5.457140 TGCATTTTTACGCTCTTTACCTTG 58.543 37.500 0.00 0.00 0.00 3.61
805 1099 1.134788 ACCTTGCCGTATACTCAGCAC 60.135 52.381 10.52 0.00 34.37 4.40
806 1100 1.134818 CCTTGCCGTATACTCAGCACA 60.135 52.381 10.52 4.06 34.37 4.57
807 1101 2.483714 CCTTGCCGTATACTCAGCACAT 60.484 50.000 10.52 0.00 34.37 3.21
809 1103 3.260475 TGCCGTATACTCAGCACATTT 57.740 42.857 7.71 0.00 0.00 2.32
810 1104 2.935849 TGCCGTATACTCAGCACATTTG 59.064 45.455 7.71 0.00 0.00 2.32
811 1105 2.936498 GCCGTATACTCAGCACATTTGT 59.064 45.455 0.56 0.00 0.00 2.83
812 1106 3.001330 GCCGTATACTCAGCACATTTGTC 59.999 47.826 0.56 0.00 0.00 3.18
813 1107 4.433615 CCGTATACTCAGCACATTTGTCT 58.566 43.478 0.56 0.00 0.00 3.41
815 1109 5.351465 CCGTATACTCAGCACATTTGTCTTT 59.649 40.000 0.56 0.00 0.00 2.52
816 1110 6.243551 CGTATACTCAGCACATTTGTCTTTG 58.756 40.000 0.56 0.00 0.00 2.77
817 1111 3.360249 ACTCAGCACATTTGTCTTTGC 57.640 42.857 0.00 0.00 35.08 3.68
818 1112 2.689471 ACTCAGCACATTTGTCTTTGCA 59.311 40.909 0.00 0.00 37.44 4.08
821 1115 4.052608 TCAGCACATTTGTCTTTGCATTG 58.947 39.130 0.00 0.00 37.44 2.82
822 1116 3.185594 CAGCACATTTGTCTTTGCATTGG 59.814 43.478 0.00 0.00 37.44 3.16
824 1118 3.430895 GCACATTTGTCTTTGCATTGGAG 59.569 43.478 0.00 0.00 34.97 3.86
826 1120 5.475719 CACATTTGTCTTTGCATTGGAGAT 58.524 37.500 0.00 0.00 0.00 2.75
827 1121 5.929992 CACATTTGTCTTTGCATTGGAGATT 59.070 36.000 0.00 0.00 0.00 2.40
828 1122 7.092079 CACATTTGTCTTTGCATTGGAGATTA 58.908 34.615 0.00 0.00 0.00 1.75
1155 1689 1.821061 CGAGTGAGGCAAGTCCACCT 61.821 60.000 0.00 0.00 39.65 4.00
1166 1700 2.234661 CAAGTCCACCTGAGTGCAGATA 59.765 50.000 0.00 0.00 45.17 1.98
1187 1721 2.228059 CCTTGCTGGCATTATCCTGAG 58.772 52.381 0.00 0.00 0.00 3.35
1419 1953 0.248621 GATTACTGCGCAACATGGCC 60.249 55.000 13.05 0.00 0.00 5.36
1488 2025 3.907474 TGGAGTATGTGTTTGAGGAGGAA 59.093 43.478 0.00 0.00 0.00 3.36
1562 2105 1.880819 GCAATGAACCACCAGGCAGG 61.881 60.000 0.00 0.00 45.67 4.85
1663 2212 7.809665 TGATGATTGCAGAAATCGTATAATGG 58.190 34.615 0.00 0.00 46.68 3.16
1924 2477 0.704551 GCGTTTTGCTCATGCTTTCG 59.295 50.000 0.00 0.00 41.73 3.46
2377 2951 2.034879 ATGGCTGCGTTGTCGAAGG 61.035 57.895 0.00 0.00 42.55 3.46
2528 3102 4.343814 ACCTTTTCTTGGTGGTGTTATTGG 59.656 41.667 0.00 0.00 36.30 3.16
2588 4863 1.841302 TTCGGGCTTCCAGCATCTGT 61.841 55.000 0.00 0.00 44.75 3.41
2589 4864 2.110967 CGGGCTTCCAGCATCTGTG 61.111 63.158 0.00 0.00 44.75 3.66
2635 4910 5.865085 AGGTTGTGAGAGTAAGCAACATAA 58.135 37.500 8.24 0.00 41.89 1.90
2646 4921 7.836183 AGAGTAAGCAACATAAGGGATTTGAAT 59.164 33.333 0.00 0.00 0.00 2.57
2748 5023 5.308014 TCACATGACAAGACTAACAAGCAT 58.692 37.500 0.00 0.00 0.00 3.79
2815 5090 2.664402 ACTGGGCAATTCACTTCACT 57.336 45.000 0.00 0.00 0.00 3.41
2971 5246 7.767198 AGTTTCTGGATTTCATGCCAATATTTG 59.233 33.333 0.00 0.00 32.95 2.32
3087 5362 6.092396 GCTGTGATCATATGATGGATGTTCTC 59.908 42.308 22.86 8.76 34.37 2.87
3129 5404 4.680171 CGAGCTTAAACCTCGGATTTTT 57.320 40.909 14.26 0.00 46.15 1.94
3149 5424 3.076079 TGCATGCTTTGGAGAGATTGA 57.924 42.857 20.33 0.00 0.00 2.57
3187 5462 5.094387 AGATTTTTGAGGAGAGGTACCTGA 58.906 41.667 22.10 0.00 37.93 3.86
3260 5559 6.401047 TGAGGATAAGGTTGATTACGGTAG 57.599 41.667 0.00 0.00 0.00 3.18
3288 5587 0.947244 GACAGGGAATATGCAAGGCG 59.053 55.000 0.00 0.00 0.00 5.52
3551 5855 4.819105 TTAGTTGCCTAGCTTGCTCTTA 57.181 40.909 9.07 0.83 0.00 2.10
3733 6037 5.179929 TGACTGCTCCATATGATTATTTGCG 59.820 40.000 3.65 0.00 0.00 4.85
3840 6144 6.042322 TGCCCTTCTACAACAAGTTAGACTTA 59.958 38.462 0.00 0.00 36.03 2.24
3841 6145 6.368243 GCCCTTCTACAACAAGTTAGACTTAC 59.632 42.308 0.00 0.00 36.03 2.34
3842 6146 7.439381 CCCTTCTACAACAAGTTAGACTTACA 58.561 38.462 0.00 0.00 36.03 2.41
3843 6147 7.929785 CCCTTCTACAACAAGTTAGACTTACAA 59.070 37.037 0.00 0.00 36.03 2.41
3844 6148 9.490379 CCTTCTACAACAAGTTAGACTTACAAT 57.510 33.333 0.00 0.00 36.03 2.71
3846 6150 9.826574 TTCTACAACAAGTTAGACTTACAATGT 57.173 29.630 0.00 0.00 36.03 2.71
3847 6151 9.472361 TCTACAACAAGTTAGACTTACAATGTC 57.528 33.333 0.00 0.00 36.03 3.06
3848 6152 7.173863 ACAACAAGTTAGACTTACAATGTCG 57.826 36.000 0.00 0.00 36.03 4.35
3849 6153 6.982141 ACAACAAGTTAGACTTACAATGTCGA 59.018 34.615 0.00 0.00 36.03 4.20
3850 6154 7.169308 ACAACAAGTTAGACTTACAATGTCGAG 59.831 37.037 0.00 0.00 36.03 4.04
3851 6155 5.634020 ACAAGTTAGACTTACAATGTCGAGC 59.366 40.000 0.00 0.00 36.03 5.03
3852 6156 5.386958 AGTTAGACTTACAATGTCGAGCA 57.613 39.130 0.00 0.00 39.24 4.26
3853 6157 5.779922 AGTTAGACTTACAATGTCGAGCAA 58.220 37.500 0.00 0.00 39.24 3.91
3854 6158 6.220930 AGTTAGACTTACAATGTCGAGCAAA 58.779 36.000 0.00 0.00 39.24 3.68
3855 6159 6.366332 AGTTAGACTTACAATGTCGAGCAAAG 59.634 38.462 0.00 0.00 39.24 2.77
3856 6160 4.632153 AGACTTACAATGTCGAGCAAAGT 58.368 39.130 0.00 0.00 39.24 2.66
3857 6161 5.779922 AGACTTACAATGTCGAGCAAAGTA 58.220 37.500 0.00 0.00 39.24 2.24
3858 6162 5.864474 AGACTTACAATGTCGAGCAAAGTAG 59.136 40.000 0.00 0.00 39.24 2.57
3859 6163 5.779922 ACTTACAATGTCGAGCAAAGTAGA 58.220 37.500 0.00 0.00 0.00 2.59
3860 6164 6.398918 ACTTACAATGTCGAGCAAAGTAGAT 58.601 36.000 0.00 0.00 0.00 1.98
3861 6165 7.544622 ACTTACAATGTCGAGCAAAGTAGATA 58.455 34.615 0.00 0.00 0.00 1.98
3862 6166 8.198109 ACTTACAATGTCGAGCAAAGTAGATAT 58.802 33.333 0.00 0.00 0.00 1.63
3863 6167 8.942338 TTACAATGTCGAGCAAAGTAGATATT 57.058 30.769 0.00 0.00 0.00 1.28
3866 6170 8.982685 ACAATGTCGAGCAAAGTAGATATTATG 58.017 33.333 0.00 0.00 0.00 1.90
3867 6171 9.196552 CAATGTCGAGCAAAGTAGATATTATGA 57.803 33.333 0.00 0.00 0.00 2.15
3868 6172 8.978564 ATGTCGAGCAAAGTAGATATTATGAG 57.021 34.615 0.00 0.00 0.00 2.90
3869 6173 8.166422 TGTCGAGCAAAGTAGATATTATGAGA 57.834 34.615 0.00 0.00 0.00 3.27
3870 6174 8.797438 TGTCGAGCAAAGTAGATATTATGAGAT 58.203 33.333 0.00 0.00 0.00 2.75
3888 6192 7.651027 ATGAGATAAAATGAGGAAAGGTTGG 57.349 36.000 0.00 0.00 0.00 3.77
3889 6193 5.418840 TGAGATAAAATGAGGAAAGGTTGGC 59.581 40.000 0.00 0.00 0.00 4.52
3890 6194 5.332743 AGATAAAATGAGGAAAGGTTGGCA 58.667 37.500 0.00 0.00 0.00 4.92
3891 6195 5.420104 AGATAAAATGAGGAAAGGTTGGCAG 59.580 40.000 0.00 0.00 0.00 4.85
3892 6196 2.978156 AATGAGGAAAGGTTGGCAGA 57.022 45.000 0.00 0.00 0.00 4.26
3893 6197 2.206576 ATGAGGAAAGGTTGGCAGAC 57.793 50.000 0.00 0.00 0.00 3.51
3894 6198 0.110486 TGAGGAAAGGTTGGCAGACC 59.890 55.000 9.86 9.86 40.11 3.85
3903 6207 4.950200 TGGCAGACCAGGCAATTT 57.050 50.000 0.00 0.00 42.67 1.82
3905 6209 1.838112 TGGCAGACCAGGCAATTTAG 58.162 50.000 0.00 0.00 42.67 1.85
3906 6210 1.075374 TGGCAGACCAGGCAATTTAGT 59.925 47.619 0.00 0.00 42.67 2.24
3907 6211 2.307392 TGGCAGACCAGGCAATTTAGTA 59.693 45.455 0.00 0.00 42.67 1.82
3908 6212 2.683362 GGCAGACCAGGCAATTTAGTAC 59.317 50.000 0.00 0.00 35.26 2.73
3909 6213 3.610911 GCAGACCAGGCAATTTAGTACT 58.389 45.455 0.00 0.00 0.00 2.73
3910 6214 3.623510 GCAGACCAGGCAATTTAGTACTC 59.376 47.826 0.00 0.00 0.00 2.59
3911 6215 4.192317 CAGACCAGGCAATTTAGTACTCC 58.808 47.826 0.00 0.00 0.00 3.85
3912 6216 3.200165 AGACCAGGCAATTTAGTACTCCC 59.800 47.826 0.00 0.00 0.00 4.30
3913 6217 3.190439 ACCAGGCAATTTAGTACTCCCT 58.810 45.455 0.00 0.00 0.00 4.20
3914 6218 3.591977 ACCAGGCAATTTAGTACTCCCTT 59.408 43.478 0.00 0.00 0.00 3.95
3915 6219 4.044191 ACCAGGCAATTTAGTACTCCCTTT 59.956 41.667 0.00 0.00 0.00 3.11
3916 6220 4.399303 CCAGGCAATTTAGTACTCCCTTTG 59.601 45.833 0.00 1.14 0.00 2.77
3917 6221 5.010282 CAGGCAATTTAGTACTCCCTTTGT 58.990 41.667 0.00 0.00 0.00 2.83
3918 6222 6.177610 CAGGCAATTTAGTACTCCCTTTGTA 58.822 40.000 0.00 0.00 0.00 2.41
3919 6223 6.657541 CAGGCAATTTAGTACTCCCTTTGTAA 59.342 38.462 0.00 0.00 0.00 2.41
3920 6224 7.175990 CAGGCAATTTAGTACTCCCTTTGTAAA 59.824 37.037 0.00 0.00 0.00 2.01
3921 6225 7.393515 AGGCAATTTAGTACTCCCTTTGTAAAG 59.606 37.037 0.00 0.00 35.79 1.85
3922 6226 7.392393 GGCAATTTAGTACTCCCTTTGTAAAGA 59.608 37.037 0.00 0.00 38.28 2.52
3923 6227 8.789762 GCAATTTAGTACTCCCTTTGTAAAGAA 58.210 33.333 0.00 0.00 38.28 2.52
3991 6295 4.861102 AAAATGAAGAAGGTTGGCAGAG 57.139 40.909 0.00 0.00 0.00 3.35
4039 6343 9.084164 TGTGAAGAAATATAAGAGCGTTTAGAC 57.916 33.333 0.00 0.00 0.00 2.59
4084 6388 7.486647 ACGCTCTTATATTTCTTTACGGAAGA 58.513 34.615 0.00 0.00 42.56 2.87
4085 6389 7.648510 ACGCTCTTATATTTCTTTACGGAAGAG 59.351 37.037 0.00 0.00 44.80 2.85
4086 6390 7.648510 CGCTCTTATATTTCTTTACGGAAGAGT 59.351 37.037 9.37 1.60 44.80 3.24
4277 6694 5.108385 AGTTGAAACCAGAAAACTATGCG 57.892 39.130 0.00 0.00 31.26 4.73
4445 6870 4.202040 TGTGTTTTCTGGAGCATTCTTGTG 60.202 41.667 0.00 0.00 0.00 3.33
4576 7042 3.535561 AGTCAAGTATTCCGCTCCATTG 58.464 45.455 0.00 0.00 0.00 2.82
4662 7128 9.842775 TTCATGTAGCTCAATAATCAGAATCTT 57.157 29.630 0.00 0.00 0.00 2.40
4717 7184 4.183916 AGGATCTTCAAAGAAGGGGGTTA 58.816 43.478 6.89 0.00 38.77 2.85
4870 7337 3.492011 GCACAATCTGCAAACAAAAGGAG 59.508 43.478 0.00 0.00 46.29 3.69
4931 7398 2.691771 CCTCTTGCTGCTGCTGCTG 61.692 63.158 27.67 20.66 40.48 4.41
4988 7455 3.495434 TCGTTGTTTCAGGGGTACAAT 57.505 42.857 0.00 0.00 34.63 2.71
5034 7501 4.019858 TGTTGGATCAGTTTGGTTTCACA 58.980 39.130 0.00 0.00 0.00 3.58
5059 7526 3.084786 GAGTCATGGAAAAAGGGACTGG 58.915 50.000 0.00 0.00 40.86 4.00
5168 7635 1.065600 AACATGTGTGTGGCGTTGC 59.934 52.632 0.00 0.00 38.92 4.17
5181 7648 4.038642 TGTGGCGTTGCTAGTATGATGATA 59.961 41.667 0.00 0.00 0.00 2.15
5198 7670 4.181799 TGATATGGTGGCAATTGGATGA 57.818 40.909 7.72 0.00 0.00 2.92
5217 7689 3.654201 CAGCCAAACTGCAGCGTA 58.346 55.556 15.27 0.00 40.19 4.42
5218 7690 1.948508 CAGCCAAACTGCAGCGTAA 59.051 52.632 15.27 0.00 40.19 3.18
5219 7691 0.310543 CAGCCAAACTGCAGCGTAAA 59.689 50.000 15.27 0.00 40.19 2.01
5220 7692 1.068333 CAGCCAAACTGCAGCGTAAAT 60.068 47.619 15.27 0.00 40.19 1.40
5221 7693 2.161410 CAGCCAAACTGCAGCGTAAATA 59.839 45.455 15.27 0.00 40.19 1.40
5222 7694 3.016736 AGCCAAACTGCAGCGTAAATAT 58.983 40.909 15.27 0.00 0.00 1.28
5223 7695 3.443681 AGCCAAACTGCAGCGTAAATATT 59.556 39.130 15.27 0.00 0.00 1.28
5224 7696 4.082245 AGCCAAACTGCAGCGTAAATATTT 60.082 37.500 15.27 5.89 0.00 1.40
5249 7721 3.305608 CCTGGTTTCATGAAAGTTCTGCC 60.306 47.826 21.05 16.76 0.00 4.85
5252 7724 3.569701 GGTTTCATGAAAGTTCTGCCTGA 59.430 43.478 21.05 0.00 0.00 3.86
5255 7727 5.633830 TTCATGAAAGTTCTGCCTGATTC 57.366 39.130 5.45 0.00 0.00 2.52
5257 7729 4.698780 TCATGAAAGTTCTGCCTGATTCTG 59.301 41.667 0.00 0.00 0.00 3.02
5347 7819 6.396450 ACCTATTTCACTTTCGTACTCCTTC 58.604 40.000 0.00 0.00 0.00 3.46
5361 7833 8.211116 TCGTACTCCTTCTCTACTTTTCTATG 57.789 38.462 0.00 0.00 0.00 2.23
5613 8086 6.963083 AGAGGAGAACGCATACTATAAGTT 57.037 37.500 0.00 0.00 0.00 2.66
5616 8089 6.740110 AGGAGAACGCATACTATAAGTTGAG 58.260 40.000 0.00 0.00 0.00 3.02
5626 8099 7.201530 GCATACTATAAGTTGAGTTTGCGTCTT 60.202 37.037 14.70 0.00 39.63 3.01
5629 8102 6.704493 ACTATAAGTTGAGTTTGCGTCTTGAA 59.296 34.615 0.00 0.00 0.00 2.69
5637 8110 2.118228 TTGCGTCTTGAATTGCACAC 57.882 45.000 0.00 0.00 37.01 3.82
5683 8156 0.377203 GGCGAAGGAAATAGTTGGCG 59.623 55.000 0.00 0.00 0.00 5.69
5731 8204 3.466836 CCCTTCAAGCATTATAGCGACA 58.533 45.455 0.00 0.00 40.15 4.35
5744 8217 3.499737 CGACAGTTCGCCATGGGC 61.500 66.667 15.13 4.92 46.75 5.36
5753 8226 3.372730 GCCATGGGCTTTGCGTCA 61.373 61.111 15.13 0.00 46.69 4.35
5754 8227 2.929903 GCCATGGGCTTTGCGTCAA 61.930 57.895 15.13 0.00 46.69 3.18
5755 8228 1.664873 CCATGGGCTTTGCGTCAAA 59.335 52.632 2.85 5.20 0.00 2.69
5756 8229 0.247185 CCATGGGCTTTGCGTCAAAT 59.753 50.000 2.85 0.00 32.70 2.32
5757 8230 1.338011 CCATGGGCTTTGCGTCAAATT 60.338 47.619 2.85 0.00 32.70 1.82
5758 8231 1.727880 CATGGGCTTTGCGTCAAATTG 59.272 47.619 5.66 0.00 32.70 2.32
5759 8232 0.033228 TGGGCTTTGCGTCAAATTGG 59.967 50.000 5.66 0.00 32.70 3.16
5760 8233 1.291184 GGGCTTTGCGTCAAATTGGC 61.291 55.000 5.66 7.26 32.70 4.52
5762 8235 1.616872 GCTTTGCGTCAAATTGGCGG 61.617 55.000 21.68 5.88 46.90 6.13
5763 8236 1.616872 CTTTGCGTCAAATTGGCGGC 61.617 55.000 21.68 13.77 46.90 6.53
5764 8237 3.565910 TTGCGTCAAATTGGCGGCC 62.566 57.895 21.68 13.32 46.90 6.13
5765 8238 3.747976 GCGTCAAATTGGCGGCCT 61.748 61.111 21.68 0.00 46.90 5.19
5766 8239 2.179018 CGTCAAATTGGCGGCCTG 59.821 61.111 21.46 10.18 42.52 4.85
5767 8240 2.331893 CGTCAAATTGGCGGCCTGA 61.332 57.895 21.46 12.57 42.52 3.86
5768 8241 1.212751 GTCAAATTGGCGGCCTGAC 59.787 57.895 21.46 20.21 0.00 3.51
5769 8242 2.179018 CAAATTGGCGGCCTGACG 59.821 61.111 21.46 1.04 0.00 4.35
5782 8255 3.686760 TGACGCACAGAGAGGGAG 58.313 61.111 0.00 0.00 0.00 4.30
5783 8256 2.183046 GACGCACAGAGAGGGAGC 59.817 66.667 0.00 0.00 0.00 4.70
5784 8257 2.283532 ACGCACAGAGAGGGAGCT 60.284 61.111 0.00 0.00 0.00 4.09
5785 8258 2.183811 CGCACAGAGAGGGAGCTG 59.816 66.667 0.00 0.00 38.10 4.24
5786 8259 2.346541 CGCACAGAGAGGGAGCTGA 61.347 63.158 0.00 0.00 36.07 4.26
5787 8260 1.217779 GCACAGAGAGGGAGCTGAC 59.782 63.158 0.00 0.00 36.07 3.51
5788 8261 1.257055 GCACAGAGAGGGAGCTGACT 61.257 60.000 0.00 0.00 36.07 3.41
5789 8262 0.531657 CACAGAGAGGGAGCTGACTG 59.468 60.000 0.00 0.00 36.07 3.51
5790 8263 0.614415 ACAGAGAGGGAGCTGACTGG 60.614 60.000 0.00 0.00 36.07 4.00
5791 8264 1.001503 AGAGAGGGAGCTGACTGGG 59.998 63.158 0.00 0.00 0.00 4.45
5792 8265 2.686835 AGAGGGAGCTGACTGGGC 60.687 66.667 0.00 0.00 0.00 5.36
5793 8266 3.791586 GAGGGAGCTGACTGGGCC 61.792 72.222 0.00 0.00 0.00 5.80
5807 8280 3.925090 GGCCGGCCTGCGTACTAT 61.925 66.667 38.76 0.00 0.00 2.12
5808 8281 2.355956 GCCGGCCTGCGTACTATC 60.356 66.667 18.11 0.00 0.00 2.08
5809 8282 3.125607 CCGGCCTGCGTACTATCA 58.874 61.111 0.00 0.00 0.00 2.15
5810 8283 1.440060 CCGGCCTGCGTACTATCAA 59.560 57.895 0.00 0.00 0.00 2.57
5811 8284 0.179094 CCGGCCTGCGTACTATCAAA 60.179 55.000 0.00 0.00 0.00 2.69
5812 8285 0.928229 CGGCCTGCGTACTATCAAAC 59.072 55.000 0.00 0.00 0.00 2.93
5813 8286 1.737696 CGGCCTGCGTACTATCAAACA 60.738 52.381 0.00 0.00 0.00 2.83
5814 8287 1.933853 GGCCTGCGTACTATCAAACAG 59.066 52.381 0.00 0.00 0.00 3.16
5815 8288 2.618053 GCCTGCGTACTATCAAACAGT 58.382 47.619 0.00 0.00 0.00 3.55
5816 8289 3.429822 GGCCTGCGTACTATCAAACAGTA 60.430 47.826 0.00 0.00 0.00 2.74
5817 8290 3.550678 GCCTGCGTACTATCAAACAGTAC 59.449 47.826 3.15 3.15 43.20 2.73
5818 8291 4.677250 GCCTGCGTACTATCAAACAGTACT 60.677 45.833 10.07 0.00 44.04 2.73
5819 8292 5.449588 GCCTGCGTACTATCAAACAGTACTA 60.450 44.000 0.00 0.72 44.04 1.82
5820 8293 6.200100 CCTGCGTACTATCAAACAGTACTAG 58.800 44.000 0.00 8.20 44.04 2.57
5821 8294 5.575957 TGCGTACTATCAAACAGTACTAGC 58.424 41.667 0.00 7.85 44.04 3.42
5822 8295 4.974888 GCGTACTATCAAACAGTACTAGCC 59.025 45.833 0.00 0.00 44.04 3.93
5823 8296 5.449588 GCGTACTATCAAACAGTACTAGCCA 60.450 44.000 0.00 0.00 44.04 4.75
5824 8297 5.970023 CGTACTATCAAACAGTACTAGCCAC 59.030 44.000 0.00 0.00 44.04 5.01
5825 8298 6.183360 CGTACTATCAAACAGTACTAGCCACT 60.183 42.308 0.00 0.00 44.04 4.00
5826 8299 6.210287 ACTATCAAACAGTACTAGCCACTC 57.790 41.667 0.00 0.00 0.00 3.51
5827 8300 3.570926 TCAAACAGTACTAGCCACTCG 57.429 47.619 0.00 0.00 0.00 4.18
5828 8301 2.230508 TCAAACAGTACTAGCCACTCGG 59.769 50.000 0.00 0.00 0.00 4.63
5829 8302 1.183549 AACAGTACTAGCCACTCGGG 58.816 55.000 0.00 0.00 40.85 5.14
5838 8311 3.843304 CCACTCGGGCTATCGACT 58.157 61.111 0.00 0.00 35.18 4.18
5839 8312 3.016997 CCACTCGGGCTATCGACTA 57.983 57.895 0.00 0.00 35.18 2.59
5840 8313 0.592148 CCACTCGGGCTATCGACTAC 59.408 60.000 0.00 0.00 35.18 2.73
5841 8314 1.595466 CACTCGGGCTATCGACTACT 58.405 55.000 0.00 0.00 35.18 2.57
5842 8315 1.264557 CACTCGGGCTATCGACTACTG 59.735 57.143 0.00 0.00 35.18 2.74
5843 8316 0.238817 CTCGGGCTATCGACTACTGC 59.761 60.000 0.00 0.00 35.18 4.40
5844 8317 0.179026 TCGGGCTATCGACTACTGCT 60.179 55.000 0.00 0.00 33.92 4.24
5845 8318 0.039978 CGGGCTATCGACTACTGCTG 60.040 60.000 0.00 0.00 0.00 4.41
5846 8319 0.319125 GGGCTATCGACTACTGCTGC 60.319 60.000 0.00 0.00 0.00 5.25
5847 8320 0.319125 GGCTATCGACTACTGCTGCC 60.319 60.000 0.00 0.00 0.00 4.85
5848 8321 0.385751 GCTATCGACTACTGCTGCCA 59.614 55.000 0.00 0.00 0.00 4.92
5849 8322 1.202417 GCTATCGACTACTGCTGCCAA 60.202 52.381 0.00 0.00 0.00 4.52
5850 8323 2.546795 GCTATCGACTACTGCTGCCAAT 60.547 50.000 0.00 0.00 0.00 3.16
5851 8324 3.305403 GCTATCGACTACTGCTGCCAATA 60.305 47.826 0.00 0.00 0.00 1.90
5852 8325 2.871182 TCGACTACTGCTGCCAATAG 57.129 50.000 0.00 0.00 0.00 1.73
5853 8326 2.375146 TCGACTACTGCTGCCAATAGA 58.625 47.619 0.00 0.00 0.00 1.98
5854 8327 2.359214 TCGACTACTGCTGCCAATAGAG 59.641 50.000 0.00 0.00 0.00 2.43
5855 8328 2.478831 GACTACTGCTGCCAATAGAGC 58.521 52.381 0.00 0.00 35.65 4.09
5856 8329 1.833630 ACTACTGCTGCCAATAGAGCA 59.166 47.619 0.00 0.00 42.94 4.26
5865 8338 4.694760 TGCCAATAGAGCAGTACATGAT 57.305 40.909 0.00 0.00 34.69 2.45
5866 8339 5.039920 TGCCAATAGAGCAGTACATGATT 57.960 39.130 0.00 0.00 34.69 2.57
5867 8340 5.439721 TGCCAATAGAGCAGTACATGATTT 58.560 37.500 0.00 0.00 34.69 2.17
5868 8341 6.591001 TGCCAATAGAGCAGTACATGATTTA 58.409 36.000 0.00 0.00 34.69 1.40
5869 8342 7.053498 TGCCAATAGAGCAGTACATGATTTAA 58.947 34.615 0.00 0.00 34.69 1.52
5870 8343 7.555914 TGCCAATAGAGCAGTACATGATTTAAA 59.444 33.333 0.00 0.00 34.69 1.52
5871 8344 8.072567 GCCAATAGAGCAGTACATGATTTAAAG 58.927 37.037 0.00 0.00 0.00 1.85
5872 8345 9.330063 CCAATAGAGCAGTACATGATTTAAAGA 57.670 33.333 0.00 0.00 0.00 2.52
5877 8350 9.944376 AGAGCAGTACATGATTTAAAGAACTAA 57.056 29.630 0.00 0.00 0.00 2.24
5878 8351 9.974750 GAGCAGTACATGATTTAAAGAACTAAC 57.025 33.333 0.00 0.00 0.00 2.34
5879 8352 8.656849 AGCAGTACATGATTTAAAGAACTAACG 58.343 33.333 0.00 0.00 0.00 3.18
5880 8353 8.653338 GCAGTACATGATTTAAAGAACTAACGA 58.347 33.333 0.00 0.00 0.00 3.85
5891 8364 9.932207 TTTAAAGAACTAACGATAGATGTGGAA 57.068 29.630 6.73 0.00 41.38 3.53
5892 8365 7.829378 AAAGAACTAACGATAGATGTGGAAC 57.171 36.000 6.73 0.00 41.38 3.62
5893 8366 5.903810 AGAACTAACGATAGATGTGGAACC 58.096 41.667 6.73 0.00 41.38 3.62
5894 8367 4.303086 ACTAACGATAGATGTGGAACCG 57.697 45.455 6.73 0.00 41.38 4.44
5895 8368 2.596904 AACGATAGATGTGGAACCGG 57.403 50.000 0.00 0.00 41.38 5.28
5896 8369 1.771565 ACGATAGATGTGGAACCGGA 58.228 50.000 9.46 0.00 41.38 5.14
5897 8370 2.104967 ACGATAGATGTGGAACCGGAA 58.895 47.619 9.46 0.00 41.38 4.30
5898 8371 2.698797 ACGATAGATGTGGAACCGGAAT 59.301 45.455 9.46 0.00 41.38 3.01
5899 8372 3.059884 CGATAGATGTGGAACCGGAATG 58.940 50.000 9.46 0.00 33.78 2.67
5900 8373 3.403038 GATAGATGTGGAACCGGAATGG 58.597 50.000 9.46 0.00 46.41 3.16
5909 8382 4.924019 CCGGAATGGTTGTAGCGA 57.076 55.556 0.00 0.00 0.00 4.93
5910 8383 3.146783 CCGGAATGGTTGTAGCGAA 57.853 52.632 0.00 0.00 0.00 4.70
5911 8384 1.444836 CCGGAATGGTTGTAGCGAAA 58.555 50.000 0.00 0.00 0.00 3.46
5912 8385 1.129811 CCGGAATGGTTGTAGCGAAAC 59.870 52.381 0.00 0.00 0.00 2.78
5913 8386 2.073816 CGGAATGGTTGTAGCGAAACT 58.926 47.619 0.00 0.00 0.00 2.66
5914 8387 2.159707 CGGAATGGTTGTAGCGAAACTG 60.160 50.000 0.00 0.00 0.00 3.16
5915 8388 3.071479 GGAATGGTTGTAGCGAAACTGA 58.929 45.455 0.00 0.00 0.00 3.41
5916 8389 3.500680 GGAATGGTTGTAGCGAAACTGAA 59.499 43.478 0.00 0.00 0.00 3.02
5917 8390 4.156008 GGAATGGTTGTAGCGAAACTGAAT 59.844 41.667 0.00 0.00 0.00 2.57
5918 8391 5.335661 GGAATGGTTGTAGCGAAACTGAATT 60.336 40.000 0.00 0.00 0.00 2.17
5919 8392 6.128117 GGAATGGTTGTAGCGAAACTGAATTA 60.128 38.462 0.00 0.00 0.00 1.40
5920 8393 5.856126 TGGTTGTAGCGAAACTGAATTAG 57.144 39.130 0.00 0.00 0.00 1.73
5921 8394 5.302360 TGGTTGTAGCGAAACTGAATTAGT 58.698 37.500 0.00 0.00 42.89 2.24
5968 8441 9.860898 AATCTATATTTTCAAGAAAGTGCCAAC 57.139 29.630 1.39 0.00 0.00 3.77
5969 8442 8.402798 TCTATATTTTCAAGAAAGTGCCAACA 57.597 30.769 1.39 0.00 0.00 3.33
5970 8443 9.023962 TCTATATTTTCAAGAAAGTGCCAACAT 57.976 29.630 1.39 0.00 0.00 2.71
5971 8444 9.643693 CTATATTTTCAAGAAAGTGCCAACATT 57.356 29.630 1.39 0.00 0.00 2.71
5972 8445 8.907222 ATATTTTCAAGAAAGTGCCAACATTT 57.093 26.923 1.39 0.00 0.00 2.32
5973 8446 9.995003 ATATTTTCAAGAAAGTGCCAACATTTA 57.005 25.926 1.39 0.00 0.00 1.40
5974 8447 8.907222 ATTTTCAAGAAAGTGCCAACATTTAT 57.093 26.923 0.00 0.00 0.00 1.40
5975 8448 8.729805 TTTTCAAGAAAGTGCCAACATTTATT 57.270 26.923 0.00 0.00 0.00 1.40
5976 8449 7.712264 TTCAAGAAAGTGCCAACATTTATTG 57.288 32.000 0.00 0.00 0.00 1.90
5977 8450 7.048629 TCAAGAAAGTGCCAACATTTATTGA 57.951 32.000 3.59 3.59 33.13 2.57
5978 8451 7.495901 TCAAGAAAGTGCCAACATTTATTGAA 58.504 30.769 4.91 0.00 32.88 2.69
5979 8452 8.149647 TCAAGAAAGTGCCAACATTTATTGAAT 58.850 29.630 4.91 0.00 32.88 2.57
5980 8453 8.776470 CAAGAAAGTGCCAACATTTATTGAATT 58.224 29.630 0.00 0.00 30.35 2.17
5981 8454 8.538409 AGAAAGTGCCAACATTTATTGAATTC 57.462 30.769 0.00 0.00 0.00 2.17
5982 8455 7.603784 AGAAAGTGCCAACATTTATTGAATTCC 59.396 33.333 2.27 0.00 0.00 3.01
5983 8456 6.610075 AGTGCCAACATTTATTGAATTCCT 57.390 33.333 2.27 0.00 0.00 3.36
5984 8457 6.400568 AGTGCCAACATTTATTGAATTCCTG 58.599 36.000 2.27 0.00 0.00 3.86
5985 8458 6.211184 AGTGCCAACATTTATTGAATTCCTGA 59.789 34.615 2.27 0.00 0.00 3.86
5986 8459 6.873076 GTGCCAACATTTATTGAATTCCTGAA 59.127 34.615 2.27 0.00 0.00 3.02
5987 8460 7.063780 GTGCCAACATTTATTGAATTCCTGAAG 59.936 37.037 2.27 0.00 0.00 3.02
5988 8461 7.039152 TGCCAACATTTATTGAATTCCTGAAGA 60.039 33.333 2.27 0.00 0.00 2.87
5989 8462 7.818930 GCCAACATTTATTGAATTCCTGAAGAA 59.181 33.333 2.27 0.00 39.32 2.52
5990 8463 9.709495 CCAACATTTATTGAATTCCTGAAGAAA 57.291 29.630 2.27 1.45 38.21 2.52
6060 8533 9.439500 AAAGTGGAAACATTTCATGATAATTGG 57.561 29.630 0.00 0.00 46.14 3.16
6061 8534 8.365060 AGTGGAAACATTTCATGATAATTGGA 57.635 30.769 0.00 0.00 46.14 3.53
6062 8535 8.814931 AGTGGAAACATTTCATGATAATTGGAA 58.185 29.630 0.00 0.00 46.14 3.53
6063 8536 8.872845 GTGGAAACATTTCATGATAATTGGAAC 58.127 33.333 0.00 0.00 46.14 3.62
6064 8537 7.758980 TGGAAACATTTCATGATAATTGGAACG 59.241 33.333 0.00 0.00 38.92 3.95
6065 8538 7.973388 GGAAACATTTCATGATAATTGGAACGA 59.027 33.333 0.00 0.00 38.92 3.85
6066 8539 9.352784 GAAACATTTCATGATAATTGGAACGAA 57.647 29.630 0.00 0.00 37.15 3.85
6067 8540 9.703892 AAACATTTCATGATAATTGGAACGAAA 57.296 25.926 0.00 0.00 0.00 3.46
6068 8541 9.703892 AACATTTCATGATAATTGGAACGAAAA 57.296 25.926 0.00 0.00 0.00 2.29
6069 8542 9.874205 ACATTTCATGATAATTGGAACGAAAAT 57.126 25.926 0.00 0.00 0.00 1.82
6072 8545 9.920133 TTTCATGATAATTGGAACGAAAATTGA 57.080 25.926 0.00 0.00 0.00 2.57
6073 8546 9.920133 TTCATGATAATTGGAACGAAAATTGAA 57.080 25.926 0.00 0.00 0.00 2.69
6074 8547 9.920133 TCATGATAATTGGAACGAAAATTGAAA 57.080 25.926 0.00 0.00 0.00 2.69
6075 8548 9.956797 CATGATAATTGGAACGAAAATTGAAAC 57.043 29.630 0.00 0.00 0.00 2.78
6076 8549 8.527567 TGATAATTGGAACGAAAATTGAAACC 57.472 30.769 0.00 0.00 0.00 3.27
6077 8550 5.898630 AATTGGAACGAAAATTGAAACCG 57.101 34.783 0.00 0.00 0.00 4.44
6078 8551 2.733517 TGGAACGAAAATTGAAACCGC 58.266 42.857 0.00 0.00 0.00 5.68
6079 8552 1.711824 GGAACGAAAATTGAAACCGCG 59.288 47.619 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.986534 ATATGCTTCTCCAATGGGGG 57.013 50.000 0.00 0.00 37.22 5.40
75 76 7.499232 ACTTTGGGTCTAATCTAATGCATGTAC 59.501 37.037 0.00 0.00 0.00 2.90
76 77 7.573710 ACTTTGGGTCTAATCTAATGCATGTA 58.426 34.615 0.00 0.00 0.00 2.29
77 78 6.426587 ACTTTGGGTCTAATCTAATGCATGT 58.573 36.000 0.00 0.00 0.00 3.21
158 209 6.980978 GCGTAGTCAGGGTACGTATATAGATA 59.019 42.308 0.00 0.00 44.14 1.98
159 210 5.814705 GCGTAGTCAGGGTACGTATATAGAT 59.185 44.000 0.00 0.00 44.14 1.98
160 211 5.171476 GCGTAGTCAGGGTACGTATATAGA 58.829 45.833 0.00 0.00 44.14 1.98
161 212 4.931601 TGCGTAGTCAGGGTACGTATATAG 59.068 45.833 0.00 0.00 44.14 1.31
164 215 2.872245 GTGCGTAGTCAGGGTACGTATA 59.128 50.000 0.00 0.00 44.14 1.47
460 687 9.845740 AACATATATACTTTGACCAGTGCATTA 57.154 29.630 0.00 0.00 0.00 1.90
470 697 9.084164 ACGAAGACACAACATATATACTTTGAC 57.916 33.333 10.70 4.23 0.00 3.18
484 715 0.782384 CCAGCGTACGAAGACACAAC 59.218 55.000 21.65 0.00 0.00 3.32
491 722 4.374707 GCGAAATAATACCAGCGTACGAAG 60.375 45.833 21.65 10.01 0.00 3.79
587 850 4.881850 GGATTTGCTAGCTAACAGCCTTTA 59.118 41.667 17.23 0.00 43.77 1.85
605 868 4.080299 GGTGACTAGGTGAGATTGGGATTT 60.080 45.833 0.00 0.00 0.00 2.17
681 944 5.819901 GCTGCATGGTCCTAATATAATCTCC 59.180 44.000 0.00 0.00 0.00 3.71
685 965 5.948162 CCAAGCTGCATGGTCCTAATATAAT 59.052 40.000 15.42 0.00 33.08 1.28
790 1070 2.936498 ACAAATGTGCTGAGTATACGGC 59.064 45.455 10.19 10.19 41.89 5.68
805 1099 9.976511 ATATAATCTCCAATGCAAAGACAAATG 57.023 29.630 0.00 0.00 0.00 2.32
1015 1549 5.598416 TCCTGAGCATCTTTTAGAATCGA 57.402 39.130 0.00 0.00 34.92 3.59
1155 1689 1.065926 CCAGCAAGGTATCTGCACTCA 60.066 52.381 0.00 0.00 0.00 3.41
1166 1700 1.565759 TCAGGATAATGCCAGCAAGGT 59.434 47.619 0.00 0.00 40.61 3.50
1187 1721 3.493767 ACTTTCCTTCCACAGAGTTCC 57.506 47.619 0.00 0.00 0.00 3.62
1419 1953 1.340399 TAGGAGATGCACCCTGCTGG 61.340 60.000 18.18 1.89 45.31 4.85
1488 2025 3.203716 GTCCTTGTCGAACCTCAAGTTT 58.796 45.455 11.27 0.00 39.40 2.66
1562 2105 1.535896 GCCGGACTTGAGAACTTTTCC 59.464 52.381 5.05 0.00 0.00 3.13
1924 2477 4.210304 GTGACAATCCGCGCTCGC 62.210 66.667 5.56 3.90 37.85 5.03
1932 2485 4.393371 GGCTTCTCAGTAAAGTGACAATCC 59.607 45.833 0.00 0.00 0.00 3.01
2377 2951 4.455877 CACTTCTGGAACATCTTTACCACC 59.544 45.833 0.00 0.00 38.20 4.61
2446 3020 3.053842 ACCTCAGATGAGATTGCCACATT 60.054 43.478 11.44 0.00 44.74 2.71
2528 3102 2.075338 CTGAAGCAGAAAGGAGAGCAC 58.925 52.381 0.00 0.00 32.44 4.40
2728 5003 5.868043 TCATGCTTGTTAGTCTTGTCATG 57.132 39.130 0.00 0.00 33.41 3.07
2748 5023 0.035317 ACAGCAACGCCTGAAGATCA 59.965 50.000 0.00 0.00 36.67 2.92
2815 5090 1.076677 AGACTCCCTAACCTTGTCCGA 59.923 52.381 0.00 0.00 0.00 4.55
2848 5123 0.381801 ACACGGCAAAACTGAAGCAG 59.618 50.000 0.00 0.00 37.52 4.24
2971 5246 3.997021 AGCTTCACACTGTAATACTGCAC 59.003 43.478 0.00 0.00 0.00 4.57
3087 5362 2.094649 GGGTTGTGAGAGACCTTCGTAG 60.095 54.545 0.00 0.00 36.18 3.51
3122 5397 3.929094 TCTCCAAAGCATGCAAAAATCC 58.071 40.909 21.98 0.00 0.00 3.01
3129 5404 3.076079 TCAATCTCTCCAAAGCATGCA 57.924 42.857 21.98 0.00 0.00 3.96
3187 5462 2.639839 TCAGCTCTTTCCTAACAGCCTT 59.360 45.455 0.00 0.00 31.81 4.35
3260 5559 3.406764 CATATTCCCTGTCTAAGCTGGC 58.593 50.000 0.00 0.00 0.00 4.85
3288 5587 2.706190 ACCCCTCAATATGCCAGAGTAC 59.294 50.000 0.00 0.00 0.00 2.73
3551 5855 4.401925 GAGCAGCCACCCATATAAGAAAT 58.598 43.478 0.00 0.00 0.00 2.17
3759 6063 2.373502 AGAGCAATTAGGGGCTATGTCC 59.626 50.000 0.00 0.00 41.22 4.02
3840 6144 8.982685 CATAATATCTACTTTGCTCGACATTGT 58.017 33.333 0.00 0.00 0.00 2.71
3841 6145 9.196552 TCATAATATCTACTTTGCTCGACATTG 57.803 33.333 0.00 0.00 0.00 2.82
3842 6146 9.416794 CTCATAATATCTACTTTGCTCGACATT 57.583 33.333 0.00 0.00 0.00 2.71
3843 6147 8.797438 TCTCATAATATCTACTTTGCTCGACAT 58.203 33.333 0.00 0.00 0.00 3.06
3844 6148 8.166422 TCTCATAATATCTACTTTGCTCGACA 57.834 34.615 0.00 0.00 0.00 4.35
3862 6166 9.189156 CCAACCTTTCCTCATTTTATCTCATAA 57.811 33.333 0.00 0.00 0.00 1.90
3863 6167 7.285401 GCCAACCTTTCCTCATTTTATCTCATA 59.715 37.037 0.00 0.00 0.00 2.15
3864 6168 6.097412 GCCAACCTTTCCTCATTTTATCTCAT 59.903 38.462 0.00 0.00 0.00 2.90
3865 6169 5.418840 GCCAACCTTTCCTCATTTTATCTCA 59.581 40.000 0.00 0.00 0.00 3.27
3866 6170 5.418840 TGCCAACCTTTCCTCATTTTATCTC 59.581 40.000 0.00 0.00 0.00 2.75
3867 6171 5.332743 TGCCAACCTTTCCTCATTTTATCT 58.667 37.500 0.00 0.00 0.00 1.98
3868 6172 5.418840 TCTGCCAACCTTTCCTCATTTTATC 59.581 40.000 0.00 0.00 0.00 1.75
3869 6173 5.185828 GTCTGCCAACCTTTCCTCATTTTAT 59.814 40.000 0.00 0.00 0.00 1.40
3870 6174 4.522789 GTCTGCCAACCTTTCCTCATTTTA 59.477 41.667 0.00 0.00 0.00 1.52
3871 6175 3.321968 GTCTGCCAACCTTTCCTCATTTT 59.678 43.478 0.00 0.00 0.00 1.82
3872 6176 2.893489 GTCTGCCAACCTTTCCTCATTT 59.107 45.455 0.00 0.00 0.00 2.32
3873 6177 2.519013 GTCTGCCAACCTTTCCTCATT 58.481 47.619 0.00 0.00 0.00 2.57
3874 6178 1.272147 GGTCTGCCAACCTTTCCTCAT 60.272 52.381 0.00 0.00 36.32 2.90
3875 6179 0.110486 GGTCTGCCAACCTTTCCTCA 59.890 55.000 0.00 0.00 36.32 3.86
3876 6180 0.110486 TGGTCTGCCAACCTTTCCTC 59.890 55.000 6.21 0.00 42.83 3.71
3877 6181 0.111253 CTGGTCTGCCAACCTTTCCT 59.889 55.000 6.21 0.00 45.51 3.36
3878 6182 0.895559 CCTGGTCTGCCAACCTTTCC 60.896 60.000 6.21 0.00 45.51 3.13
3879 6183 1.527433 GCCTGGTCTGCCAACCTTTC 61.527 60.000 6.21 0.00 45.51 2.62
3880 6184 1.531602 GCCTGGTCTGCCAACCTTT 60.532 57.895 6.21 0.00 45.51 3.11
3881 6185 2.116125 GCCTGGTCTGCCAACCTT 59.884 61.111 6.21 0.00 45.51 3.50
3882 6186 2.085343 ATTGCCTGGTCTGCCAACCT 62.085 55.000 6.21 0.00 45.51 3.50
3883 6187 1.187567 AATTGCCTGGTCTGCCAACC 61.188 55.000 0.00 0.00 45.51 3.77
3884 6188 0.681175 AAATTGCCTGGTCTGCCAAC 59.319 50.000 0.00 0.00 45.51 3.77
3885 6189 2.170166 CTAAATTGCCTGGTCTGCCAA 58.830 47.619 0.00 0.00 45.51 4.52
3886 6190 1.075374 ACTAAATTGCCTGGTCTGCCA 59.925 47.619 0.00 0.00 43.73 4.92
3887 6191 1.839424 ACTAAATTGCCTGGTCTGCC 58.161 50.000 0.00 0.00 0.00 4.85
3888 6192 3.610911 AGTACTAAATTGCCTGGTCTGC 58.389 45.455 0.00 0.00 0.00 4.26
3889 6193 4.192317 GGAGTACTAAATTGCCTGGTCTG 58.808 47.826 0.00 0.00 0.00 3.51
3890 6194 3.200165 GGGAGTACTAAATTGCCTGGTCT 59.800 47.826 0.00 0.00 0.00 3.85
3891 6195 3.200165 AGGGAGTACTAAATTGCCTGGTC 59.800 47.826 0.00 0.00 30.86 4.02
3892 6196 3.190439 AGGGAGTACTAAATTGCCTGGT 58.810 45.455 0.00 0.00 30.86 4.00
3893 6197 3.933861 AGGGAGTACTAAATTGCCTGG 57.066 47.619 0.00 0.00 30.86 4.45
3894 6198 5.010282 ACAAAGGGAGTACTAAATTGCCTG 58.990 41.667 0.00 0.00 32.56 4.85
3895 6199 5.256806 ACAAAGGGAGTACTAAATTGCCT 57.743 39.130 0.00 0.00 33.73 4.75
3896 6200 7.392393 TCTTTACAAAGGGAGTACTAAATTGCC 59.608 37.037 0.00 0.00 36.67 4.52
3897 6201 8.331730 TCTTTACAAAGGGAGTACTAAATTGC 57.668 34.615 0.00 0.00 36.67 3.56
3925 6229 9.727859 TGCTCCACACTGTTAAAAGTAATTATA 57.272 29.630 0.00 0.00 0.00 0.98
3926 6230 8.630054 TGCTCCACACTGTTAAAAGTAATTAT 57.370 30.769 0.00 0.00 0.00 1.28
3927 6231 8.453238 TTGCTCCACACTGTTAAAAGTAATTA 57.547 30.769 0.00 0.00 0.00 1.40
3928 6232 6.952773 TGCTCCACACTGTTAAAAGTAATT 57.047 33.333 0.00 0.00 0.00 1.40
3929 6233 6.952773 TTGCTCCACACTGTTAAAAGTAAT 57.047 33.333 0.00 0.00 0.00 1.89
3930 6234 6.376018 ACTTTGCTCCACACTGTTAAAAGTAA 59.624 34.615 0.00 0.00 35.47 2.24
3931 6235 5.883673 ACTTTGCTCCACACTGTTAAAAGTA 59.116 36.000 0.00 0.00 35.47 2.24
3932 6236 4.705023 ACTTTGCTCCACACTGTTAAAAGT 59.295 37.500 0.00 0.00 33.12 2.66
3933 6237 5.248870 ACTTTGCTCCACACTGTTAAAAG 57.751 39.130 0.00 0.00 0.00 2.27
3934 6238 6.116806 TCTACTTTGCTCCACACTGTTAAAA 58.883 36.000 0.00 0.00 0.00 1.52
3935 6239 5.676552 TCTACTTTGCTCCACACTGTTAAA 58.323 37.500 0.00 0.00 0.00 1.52
3991 6295 3.118223 AGAGGGAGTACTAAATTGCCTGC 60.118 47.826 0.00 0.00 32.34 4.85
4277 6694 9.959749 TGTTTCACTATAAAATGAACTGAAACC 57.040 29.630 14.53 2.31 42.50 3.27
4355 6777 1.134753 TGTGTGCTTCAAGGTGCTTTG 59.865 47.619 0.00 0.00 0.00 2.77
4445 6870 5.163854 CGACATTCCTTGTTGTAATCCTGAC 60.164 44.000 0.00 0.00 39.18 3.51
4497 6924 8.015658 GCGACAAATTTAACAAGTAGAATCACT 58.984 33.333 0.00 0.00 0.00 3.41
4576 7042 0.475475 TGGATGAGATGACCCCATGC 59.525 55.000 0.00 0.00 32.09 4.06
4662 7128 9.595823 CTAGACCGAAAATAATAGTCCAGAAAA 57.404 33.333 0.00 0.00 0.00 2.29
4667 7133 7.152645 GCATCTAGACCGAAAATAATAGTCCA 58.847 38.462 0.00 0.00 0.00 4.02
4717 7184 5.471456 AGACGCATTTCTTCTTTCAGTCAAT 59.529 36.000 0.00 0.00 0.00 2.57
4870 7337 5.104259 ACATGGAACTGATAGAAAGGGAC 57.896 43.478 0.00 0.00 0.00 4.46
4899 7366 6.098982 AGCAGCAAGAGGAAACTATATACTGT 59.901 38.462 0.00 0.00 44.43 3.55
4900 7367 6.423302 CAGCAGCAAGAGGAAACTATATACTG 59.577 42.308 0.00 0.00 44.43 2.74
4931 7398 5.048921 ACAACATAATCATATCAGCAGCAGC 60.049 40.000 0.00 0.00 42.56 5.25
4932 7399 6.371389 CACAACATAATCATATCAGCAGCAG 58.629 40.000 0.00 0.00 0.00 4.24
4933 7400 5.278120 GCACAACATAATCATATCAGCAGCA 60.278 40.000 0.00 0.00 0.00 4.41
4934 7401 5.152097 GCACAACATAATCATATCAGCAGC 58.848 41.667 0.00 0.00 0.00 5.25
4935 7402 6.308371 TGCACAACATAATCATATCAGCAG 57.692 37.500 0.00 0.00 0.00 4.24
4936 7403 6.713450 AGATGCACAACATAATCATATCAGCA 59.287 34.615 0.00 0.00 39.84 4.41
4937 7404 7.142306 AGATGCACAACATAATCATATCAGC 57.858 36.000 0.00 0.00 39.84 4.26
4938 7405 9.394477 CAAAGATGCACAACATAATCATATCAG 57.606 33.333 0.00 0.00 39.84 2.90
4939 7406 9.122779 TCAAAGATGCACAACATAATCATATCA 57.877 29.630 0.00 0.00 39.84 2.15
4988 7455 0.034756 AACTGCAGCGTATGTCACCA 59.965 50.000 15.27 0.00 0.00 4.17
5034 7501 1.614317 CCCTTTTTCCATGACTCCGCT 60.614 52.381 0.00 0.00 0.00 5.52
5059 7526 7.043565 TGTTACTACCTCCATAATTCCGAAAC 58.956 38.462 0.00 0.00 0.00 2.78
5168 7635 7.066645 CCAATTGCCACCATATCATCATACTAG 59.933 40.741 0.00 0.00 0.00 2.57
5181 7648 2.498481 CTGTTCATCCAATTGCCACCAT 59.502 45.455 0.00 0.00 0.00 3.55
5198 7670 0.817634 TACGCTGCAGTTTGGCTGTT 60.818 50.000 16.64 0.00 46.64 3.16
5211 7683 7.087639 TGAAACCAGGAAAAATATTTACGCTG 58.912 34.615 0.01 8.30 34.33 5.18
5212 7684 7.222000 TGAAACCAGGAAAAATATTTACGCT 57.778 32.000 0.01 0.00 34.33 5.07
5213 7685 7.757624 TCATGAAACCAGGAAAAATATTTACGC 59.242 33.333 0.01 0.00 34.33 4.42
5214 7686 9.632807 TTCATGAAACCAGGAAAAATATTTACG 57.367 29.630 5.45 0.00 34.33 3.18
5219 7691 9.710900 GAACTTTCATGAAACCAGGAAAAATAT 57.289 29.630 16.91 0.00 41.74 1.28
5220 7692 8.923270 AGAACTTTCATGAAACCAGGAAAAATA 58.077 29.630 16.91 0.00 41.74 1.40
5221 7693 7.712205 CAGAACTTTCATGAAACCAGGAAAAAT 59.288 33.333 16.91 0.03 41.74 1.82
5222 7694 7.041107 CAGAACTTTCATGAAACCAGGAAAAA 58.959 34.615 16.91 0.00 41.74 1.94
5223 7695 6.572519 CAGAACTTTCATGAAACCAGGAAAA 58.427 36.000 16.91 0.00 41.74 2.29
5224 7696 5.451798 GCAGAACTTTCATGAAACCAGGAAA 60.452 40.000 16.91 5.37 40.60 3.13
5249 7721 7.857885 GGAGAAAAACACAGTAAACAGAATCAG 59.142 37.037 0.00 0.00 0.00 2.90
5252 7724 6.725246 CGGAGAAAAACACAGTAAACAGAAT 58.275 36.000 0.00 0.00 0.00 2.40
5255 7727 4.035208 AGCGGAGAAAAACACAGTAAACAG 59.965 41.667 0.00 0.00 0.00 3.16
5257 7729 4.547406 AGCGGAGAAAAACACAGTAAAC 57.453 40.909 0.00 0.00 0.00 2.01
5336 7808 7.828223 ACATAGAAAAGTAGAGAAGGAGTACGA 59.172 37.037 0.00 0.00 0.00 3.43
5498 7970 9.965824 GTCAAAAGAAGTCTTGAAAAATATGGA 57.034 29.630 0.00 0.00 36.12 3.41
5613 8086 2.357323 TGCAATTCAAGACGCAAACTCA 59.643 40.909 0.00 0.00 0.00 3.41
5616 8089 2.216263 GTGTGCAATTCAAGACGCAAAC 59.784 45.455 0.00 0.00 35.59 2.93
5626 8099 1.291184 CTCGCCGAGTGTGCAATTCA 61.291 55.000 5.82 0.00 0.00 2.57
5629 8102 3.121030 GCTCGCCGAGTGTGCAAT 61.121 61.111 16.50 0.00 33.56 3.56
5637 8110 1.260033 GAAAATCATCTGCTCGCCGAG 59.740 52.381 10.36 10.36 0.00 4.63
5683 8156 2.355010 ATGACCAGCCCATTTAGCTC 57.645 50.000 0.00 0.00 38.95 4.09
5743 8216 1.616872 CCGCCAATTTGACGCAAAGC 61.617 55.000 0.00 7.62 36.76 3.51
5744 8217 1.616872 GCCGCCAATTTGACGCAAAG 61.617 55.000 0.00 0.48 36.76 2.77
5745 8218 1.663074 GCCGCCAATTTGACGCAAA 60.663 52.632 0.00 7.32 37.75 3.68
5746 8219 2.049618 GCCGCCAATTTGACGCAA 60.050 55.556 0.00 0.00 0.00 4.85
5747 8220 4.049640 GGCCGCCAATTTGACGCA 62.050 61.111 3.91 0.00 0.00 5.24
5748 8221 3.747976 AGGCCGCCAATTTGACGC 61.748 61.111 13.15 0.00 0.00 5.19
5749 8222 2.179018 CAGGCCGCCAATTTGACG 59.821 61.111 13.15 0.00 0.00 4.35
5750 8223 1.212751 GTCAGGCCGCCAATTTGAC 59.787 57.895 13.15 12.66 0.00 3.18
5751 8224 2.331893 CGTCAGGCCGCCAATTTGA 61.332 57.895 13.15 3.33 0.00 2.69
5752 8225 2.179018 CGTCAGGCCGCCAATTTG 59.821 61.111 13.15 0.52 0.00 2.32
5760 8233 3.978723 CTCTCTGTGCGTCAGGCCG 62.979 68.421 0.00 0.00 43.76 6.13
5761 8234 2.125753 CTCTCTGTGCGTCAGGCC 60.126 66.667 0.00 0.00 43.76 5.19
5762 8235 2.125753 CCTCTCTGTGCGTCAGGC 60.126 66.667 8.48 0.00 43.76 4.85
5763 8236 1.943116 CTCCCTCTCTGTGCGTCAGG 61.943 65.000 8.48 1.44 43.76 3.86
5764 8237 1.510383 CTCCCTCTCTGTGCGTCAG 59.490 63.158 2.82 2.82 44.85 3.51
5765 8238 2.640302 GCTCCCTCTCTGTGCGTCA 61.640 63.158 0.00 0.00 0.00 4.35
5766 8239 2.183046 GCTCCCTCTCTGTGCGTC 59.817 66.667 0.00 0.00 0.00 5.19
5767 8240 2.283532 AGCTCCCTCTCTGTGCGT 60.284 61.111 0.00 0.00 0.00 5.24
5768 8241 2.183811 CAGCTCCCTCTCTGTGCG 59.816 66.667 0.00 0.00 0.00 5.34
5769 8242 1.217779 GTCAGCTCCCTCTCTGTGC 59.782 63.158 0.00 0.00 0.00 4.57
5770 8243 0.531657 CAGTCAGCTCCCTCTCTGTG 59.468 60.000 0.00 0.00 0.00 3.66
5771 8244 0.614415 CCAGTCAGCTCCCTCTCTGT 60.614 60.000 0.00 0.00 0.00 3.41
5772 8245 1.329171 CCCAGTCAGCTCCCTCTCTG 61.329 65.000 0.00 0.00 0.00 3.35
5773 8246 1.001503 CCCAGTCAGCTCCCTCTCT 59.998 63.158 0.00 0.00 0.00 3.10
5774 8247 2.730524 GCCCAGTCAGCTCCCTCTC 61.731 68.421 0.00 0.00 0.00 3.20
5775 8248 2.686835 GCCCAGTCAGCTCCCTCT 60.687 66.667 0.00 0.00 0.00 3.69
5776 8249 3.791586 GGCCCAGTCAGCTCCCTC 61.792 72.222 0.00 0.00 0.00 4.30
5790 8263 3.860630 GATAGTACGCAGGCCGGCC 62.861 68.421 39.29 39.29 42.52 6.13
5791 8264 2.355956 GATAGTACGCAGGCCGGC 60.356 66.667 21.18 21.18 42.52 6.13
5792 8265 0.179094 TTTGATAGTACGCAGGCCGG 60.179 55.000 0.00 0.00 42.52 6.13
5793 8266 0.928229 GTTTGATAGTACGCAGGCCG 59.072 55.000 0.00 0.00 44.21 6.13
5794 8267 1.933853 CTGTTTGATAGTACGCAGGCC 59.066 52.381 0.00 0.00 0.00 5.19
5795 8268 2.618053 ACTGTTTGATAGTACGCAGGC 58.382 47.619 0.00 0.00 0.00 4.85
5801 8274 7.098074 AGTGGCTAGTACTGTTTGATAGTAC 57.902 40.000 5.39 7.10 46.82 2.73
5802 8275 6.037940 CGAGTGGCTAGTACTGTTTGATAGTA 59.962 42.308 5.39 0.00 0.00 1.82
5803 8276 5.163642 CGAGTGGCTAGTACTGTTTGATAGT 60.164 44.000 5.39 0.00 0.00 2.12
5804 8277 5.274718 CGAGTGGCTAGTACTGTTTGATAG 58.725 45.833 5.39 0.00 0.00 2.08
5805 8278 4.097437 CCGAGTGGCTAGTACTGTTTGATA 59.903 45.833 5.39 0.00 0.00 2.15
5806 8279 3.119101 CCGAGTGGCTAGTACTGTTTGAT 60.119 47.826 5.39 0.00 0.00 2.57
5807 8280 2.230508 CCGAGTGGCTAGTACTGTTTGA 59.769 50.000 5.39 0.00 0.00 2.69
5808 8281 2.607187 CCGAGTGGCTAGTACTGTTTG 58.393 52.381 5.39 0.00 0.00 2.93
5809 8282 1.549170 CCCGAGTGGCTAGTACTGTTT 59.451 52.381 5.39 0.00 0.00 2.83
5810 8283 1.183549 CCCGAGTGGCTAGTACTGTT 58.816 55.000 5.39 0.00 0.00 3.16
5811 8284 2.883572 CCCGAGTGGCTAGTACTGT 58.116 57.895 5.39 0.00 0.00 3.55
5821 8294 0.592148 GTAGTCGATAGCCCGAGTGG 59.408 60.000 10.23 0.00 41.69 4.00
5822 8295 1.264557 CAGTAGTCGATAGCCCGAGTG 59.735 57.143 10.23 0.00 41.69 3.51
5823 8296 1.595466 CAGTAGTCGATAGCCCGAGT 58.405 55.000 0.00 0.00 43.68 4.18
5824 8297 0.238817 GCAGTAGTCGATAGCCCGAG 59.761 60.000 0.00 0.00 39.43 4.63
5825 8298 0.179026 AGCAGTAGTCGATAGCCCGA 60.179 55.000 0.00 0.00 36.06 5.14
5826 8299 0.039978 CAGCAGTAGTCGATAGCCCG 60.040 60.000 0.00 0.00 0.00 6.13
5827 8300 0.319125 GCAGCAGTAGTCGATAGCCC 60.319 60.000 0.00 0.00 0.00 5.19
5828 8301 0.319125 GGCAGCAGTAGTCGATAGCC 60.319 60.000 0.00 0.00 0.00 3.93
5829 8302 0.385751 TGGCAGCAGTAGTCGATAGC 59.614 55.000 0.00 0.00 0.00 2.97
5830 8303 2.871182 TTGGCAGCAGTAGTCGATAG 57.129 50.000 0.00 0.00 0.00 2.08
5831 8304 4.142038 TCTATTGGCAGCAGTAGTCGATA 58.858 43.478 0.00 0.00 0.00 2.92
5832 8305 2.959030 TCTATTGGCAGCAGTAGTCGAT 59.041 45.455 0.00 0.00 0.00 3.59
5833 8306 2.359214 CTCTATTGGCAGCAGTAGTCGA 59.641 50.000 0.00 0.00 0.00 4.20
5834 8307 2.736978 CTCTATTGGCAGCAGTAGTCG 58.263 52.381 0.00 0.00 0.00 4.18
5835 8308 2.159043 TGCTCTATTGGCAGCAGTAGTC 60.159 50.000 0.00 0.00 40.80 2.59
5836 8309 1.833630 TGCTCTATTGGCAGCAGTAGT 59.166 47.619 0.00 0.00 40.80 2.73
5837 8310 2.609427 TGCTCTATTGGCAGCAGTAG 57.391 50.000 0.00 0.00 40.80 2.57
5844 8317 4.694760 ATCATGTACTGCTCTATTGGCA 57.305 40.909 0.00 0.00 38.10 4.92
5845 8318 7.496529 TTAAATCATGTACTGCTCTATTGGC 57.503 36.000 0.00 0.00 0.00 4.52
5846 8319 9.330063 TCTTTAAATCATGTACTGCTCTATTGG 57.670 33.333 0.00 0.00 0.00 3.16
5851 8324 9.944376 TTAGTTCTTTAAATCATGTACTGCTCT 57.056 29.630 0.00 0.00 0.00 4.09
5852 8325 9.974750 GTTAGTTCTTTAAATCATGTACTGCTC 57.025 33.333 0.00 0.00 0.00 4.26
5853 8326 8.656849 CGTTAGTTCTTTAAATCATGTACTGCT 58.343 33.333 0.00 0.00 0.00 4.24
5854 8327 8.653338 TCGTTAGTTCTTTAAATCATGTACTGC 58.347 33.333 0.00 0.00 0.00 4.40
5865 8338 9.932207 TTCCACATCTATCGTTAGTTCTTTAAA 57.068 29.630 0.63 0.00 0.00 1.52
5866 8339 9.362539 GTTCCACATCTATCGTTAGTTCTTTAA 57.637 33.333 0.63 0.00 0.00 1.52
5867 8340 7.977853 GGTTCCACATCTATCGTTAGTTCTTTA 59.022 37.037 0.63 0.00 0.00 1.85
5868 8341 6.817140 GGTTCCACATCTATCGTTAGTTCTTT 59.183 38.462 0.63 0.00 0.00 2.52
5869 8342 6.338937 GGTTCCACATCTATCGTTAGTTCTT 58.661 40.000 0.63 0.00 0.00 2.52
5870 8343 5.450137 CGGTTCCACATCTATCGTTAGTTCT 60.450 44.000 0.63 0.00 0.00 3.01
5871 8344 4.738740 CGGTTCCACATCTATCGTTAGTTC 59.261 45.833 0.63 0.00 0.00 3.01
5872 8345 4.441079 CCGGTTCCACATCTATCGTTAGTT 60.441 45.833 0.00 0.00 0.00 2.24
5873 8346 3.067742 CCGGTTCCACATCTATCGTTAGT 59.932 47.826 0.00 0.00 0.00 2.24
5874 8347 3.317149 TCCGGTTCCACATCTATCGTTAG 59.683 47.826 0.00 0.00 0.00 2.34
5875 8348 3.289836 TCCGGTTCCACATCTATCGTTA 58.710 45.455 0.00 0.00 0.00 3.18
5876 8349 2.104967 TCCGGTTCCACATCTATCGTT 58.895 47.619 0.00 0.00 0.00 3.85
5877 8350 1.771565 TCCGGTTCCACATCTATCGT 58.228 50.000 0.00 0.00 0.00 3.73
5878 8351 2.882927 TTCCGGTTCCACATCTATCG 57.117 50.000 0.00 0.00 0.00 2.92
5879 8352 3.403038 CCATTCCGGTTCCACATCTATC 58.597 50.000 0.00 0.00 0.00 2.08
5880 8353 3.492102 CCATTCCGGTTCCACATCTAT 57.508 47.619 0.00 0.00 0.00 1.98
5882 8355 3.882131 CCATTCCGGTTCCACATCT 57.118 52.632 0.00 0.00 0.00 2.90
5892 8365 1.129811 GTTTCGCTACAACCATTCCGG 59.870 52.381 0.00 0.00 42.50 5.14
5893 8366 2.073816 AGTTTCGCTACAACCATTCCG 58.926 47.619 0.00 0.00 0.00 4.30
5894 8367 3.071479 TCAGTTTCGCTACAACCATTCC 58.929 45.455 0.00 0.00 0.00 3.01
5895 8368 4.742438 TTCAGTTTCGCTACAACCATTC 57.258 40.909 0.00 0.00 0.00 2.67
5896 8369 5.705609 AATTCAGTTTCGCTACAACCATT 57.294 34.783 0.00 0.00 0.00 3.16
5897 8370 5.938125 ACTAATTCAGTTTCGCTACAACCAT 59.062 36.000 0.00 0.00 31.59 3.55
5898 8371 5.302360 ACTAATTCAGTTTCGCTACAACCA 58.698 37.500 0.00 0.00 31.59 3.67
5899 8372 5.857822 ACTAATTCAGTTTCGCTACAACC 57.142 39.130 0.00 0.00 31.59 3.77
5900 8373 8.015409 AGTAACTAATTCAGTTTCGCTACAAC 57.985 34.615 5.88 0.00 45.54 3.32
5901 8374 9.350357 CTAGTAACTAATTCAGTTTCGCTACAA 57.650 33.333 5.88 0.00 45.54 2.41
5902 8375 7.972277 CCTAGTAACTAATTCAGTTTCGCTACA 59.028 37.037 5.88 0.00 45.54 2.74
5903 8376 7.972832 ACCTAGTAACTAATTCAGTTTCGCTAC 59.027 37.037 5.88 0.47 45.54 3.58
5904 8377 8.059798 ACCTAGTAACTAATTCAGTTTCGCTA 57.940 34.615 5.88 6.22 45.54 4.26
5905 8378 6.932947 ACCTAGTAACTAATTCAGTTTCGCT 58.067 36.000 5.88 5.66 45.54 4.93
5906 8379 7.330208 TCAACCTAGTAACTAATTCAGTTTCGC 59.670 37.037 5.88 0.00 45.54 4.70
5907 8380 8.752766 TCAACCTAGTAACTAATTCAGTTTCG 57.247 34.615 5.88 0.00 45.54 3.46
5942 8415 9.860898 GTTGGCACTTTCTTGAAAATATAGATT 57.139 29.630 0.00 0.00 0.00 2.40
5943 8416 9.023962 TGTTGGCACTTTCTTGAAAATATAGAT 57.976 29.630 0.00 0.00 0.00 1.98
5944 8417 8.402798 TGTTGGCACTTTCTTGAAAATATAGA 57.597 30.769 0.00 0.00 0.00 1.98
5945 8418 9.643693 AATGTTGGCACTTTCTTGAAAATATAG 57.356 29.630 0.00 0.00 0.00 1.31
5946 8419 9.995003 AAATGTTGGCACTTTCTTGAAAATATA 57.005 25.926 0.00 0.00 0.00 0.86
5947 8420 8.907222 AAATGTTGGCACTTTCTTGAAAATAT 57.093 26.923 0.00 0.00 0.00 1.28
5948 8421 9.995003 ATAAATGTTGGCACTTTCTTGAAAATA 57.005 25.926 0.00 0.00 0.00 1.40
5949 8422 8.907222 ATAAATGTTGGCACTTTCTTGAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
5950 8423 8.610896 CAATAAATGTTGGCACTTTCTTGAAAA 58.389 29.630 0.00 0.00 0.00 2.29
5951 8424 7.984050 TCAATAAATGTTGGCACTTTCTTGAAA 59.016 29.630 11.45 0.00 28.77 2.69
5952 8425 7.495901 TCAATAAATGTTGGCACTTTCTTGAA 58.504 30.769 11.45 0.00 28.77 2.69
5953 8426 7.048629 TCAATAAATGTTGGCACTTTCTTGA 57.951 32.000 10.50 10.50 0.00 3.02
5954 8427 7.712264 TTCAATAAATGTTGGCACTTTCTTG 57.288 32.000 0.00 0.00 0.00 3.02
5955 8428 8.907222 AATTCAATAAATGTTGGCACTTTCTT 57.093 26.923 0.00 0.00 0.00 2.52
5956 8429 7.603784 GGAATTCAATAAATGTTGGCACTTTCT 59.396 33.333 7.93 0.00 0.00 2.52
5957 8430 7.603784 AGGAATTCAATAAATGTTGGCACTTTC 59.396 33.333 7.93 0.00 0.00 2.62
5958 8431 7.388500 CAGGAATTCAATAAATGTTGGCACTTT 59.612 33.333 7.93 0.00 0.00 2.66
5959 8432 6.875195 CAGGAATTCAATAAATGTTGGCACTT 59.125 34.615 7.93 0.00 0.00 3.16
5960 8433 6.211184 TCAGGAATTCAATAAATGTTGGCACT 59.789 34.615 7.93 0.00 0.00 4.40
5961 8434 6.397272 TCAGGAATTCAATAAATGTTGGCAC 58.603 36.000 7.93 0.00 0.00 5.01
5962 8435 6.602410 TCAGGAATTCAATAAATGTTGGCA 57.398 33.333 7.93 0.00 0.00 4.92
5963 8436 7.322664 TCTTCAGGAATTCAATAAATGTTGGC 58.677 34.615 7.93 0.00 0.00 4.52
5964 8437 9.709495 TTTCTTCAGGAATTCAATAAATGTTGG 57.291 29.630 7.93 0.00 33.53 3.77
6034 8507 9.439500 CCAATTATCATGAAATGTTTCCACTTT 57.561 29.630 0.00 0.00 46.80 2.66
6035 8508 8.814931 TCCAATTATCATGAAATGTTTCCACTT 58.185 29.630 0.00 0.00 46.80 3.16
6036 8509 8.365060 TCCAATTATCATGAAATGTTTCCACT 57.635 30.769 0.00 0.00 46.80 4.00
6037 8510 8.872845 GTTCCAATTATCATGAAATGTTTCCAC 58.127 33.333 0.00 0.00 46.80 4.02
6038 8511 7.758980 CGTTCCAATTATCATGAAATGTTTCCA 59.241 33.333 0.00 0.00 46.80 3.53
6039 8512 7.973388 TCGTTCCAATTATCATGAAATGTTTCC 59.027 33.333 0.00 0.00 46.80 3.13
6040 8513 8.909708 TCGTTCCAATTATCATGAAATGTTTC 57.090 30.769 0.00 0.00 46.80 2.78
6041 8514 9.703892 TTTCGTTCCAATTATCATGAAATGTTT 57.296 25.926 0.00 0.00 46.80 2.83
6042 8515 9.703892 TTTTCGTTCCAATTATCATGAAATGTT 57.296 25.926 0.00 0.00 46.80 2.71
6043 8516 9.874205 ATTTTCGTTCCAATTATCATGAAATGT 57.126 25.926 0.00 0.00 46.80 2.71
6046 8519 9.920133 TCAATTTTCGTTCCAATTATCATGAAA 57.080 25.926 0.00 0.00 0.00 2.69
6047 8520 9.920133 TTCAATTTTCGTTCCAATTATCATGAA 57.080 25.926 0.00 0.00 0.00 2.57
6048 8521 9.920133 TTTCAATTTTCGTTCCAATTATCATGA 57.080 25.926 0.00 0.00 0.00 3.07
6049 8522 9.956797 GTTTCAATTTTCGTTCCAATTATCATG 57.043 29.630 0.00 0.00 0.00 3.07
6050 8523 9.150348 GGTTTCAATTTTCGTTCCAATTATCAT 57.850 29.630 0.00 0.00 0.00 2.45
6051 8524 7.327275 CGGTTTCAATTTTCGTTCCAATTATCA 59.673 33.333 0.00 0.00 0.00 2.15
6052 8525 7.662761 CGGTTTCAATTTTCGTTCCAATTATC 58.337 34.615 0.00 0.00 0.00 1.75
6053 8526 6.090223 GCGGTTTCAATTTTCGTTCCAATTAT 59.910 34.615 0.00 0.00 0.00 1.28
6054 8527 5.402867 GCGGTTTCAATTTTCGTTCCAATTA 59.597 36.000 0.00 0.00 0.00 1.40
6055 8528 4.210328 GCGGTTTCAATTTTCGTTCCAATT 59.790 37.500 0.00 0.00 0.00 2.32
6056 8529 3.738791 GCGGTTTCAATTTTCGTTCCAAT 59.261 39.130 0.00 0.00 0.00 3.16
6057 8530 3.117046 GCGGTTTCAATTTTCGTTCCAA 58.883 40.909 0.00 0.00 0.00 3.53
6058 8531 2.733517 GCGGTTTCAATTTTCGTTCCA 58.266 42.857 0.00 0.00 0.00 3.53
6059 8532 1.711824 CGCGGTTTCAATTTTCGTTCC 59.288 47.619 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.