Multiple sequence alignment - TraesCS5B01G032400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G032400 chr5B 100.000 5222 0 0 1 5222 35549947 35544726 0.000000e+00 9644.0
1 TraesCS5B01G032400 chr5B 100.000 35 0 0 4795 4829 35545110 35545076 1.210000e-06 65.8
2 TraesCS5B01G032400 chr5B 100.000 35 0 0 4838 4872 35545153 35545119 1.210000e-06 65.8
3 TraesCS5B01G032400 chr5A 95.376 2790 83 13 613 3402 29711832 29709089 0.000000e+00 4396.0
4 TraesCS5B01G032400 chr5A 93.434 396 14 3 4838 5222 29691477 29691083 1.260000e-160 577.0
5 TraesCS5B01G032400 chr5A 89.199 287 24 6 1 284 546573679 546573961 8.320000e-93 351.0
6 TraesCS5B01G032400 chr5A 96.552 174 6 0 4656 4829 29691616 29691443 6.620000e-74 289.0
7 TraesCS5B01G032400 chr5A 95.804 143 6 0 423 565 29712445 29712303 1.130000e-56 231.0
8 TraesCS5B01G032400 chr6B 86.794 3703 442 30 983 4665 65090840 65087165 0.000000e+00 4085.0
9 TraesCS5B01G032400 chr6B 85.623 3283 456 14 956 4229 64689704 64686429 0.000000e+00 3434.0
10 TraesCS5B01G032400 chr6B 84.562 2578 373 18 1586 4152 15276917 15274354 0.000000e+00 2532.0
11 TraesCS5B01G032400 chr6B 77.989 945 189 16 1062 1995 2694535 2695471 4.540000e-160 575.0
12 TraesCS5B01G032400 chr6B 91.250 400 18 7 4838 5222 65086987 65086590 3.580000e-146 529.0
13 TraesCS5B01G032400 chr6B 95.402 174 7 1 4656 4829 65087125 65086953 5.150000e-70 276.0
14 TraesCS5B01G032400 chr6D 85.050 3572 438 53 1077 4627 424573 421077 0.000000e+00 3550.0
15 TraesCS5B01G032400 chr6D 85.191 3005 389 32 1674 4657 724451 721482 0.000000e+00 3033.0
16 TraesCS5B01G032400 chr6D 90.345 145 7 2 4905 5048 421064 420926 3.210000e-42 183.0
17 TraesCS5B01G032400 chr6D 87.952 83 10 0 4366 4448 397094 397012 1.200000e-16 99.0
18 TraesCS5B01G032400 chrUn 83.625 3713 522 52 969 4653 101627142 101630796 0.000000e+00 3410.0
19 TraesCS5B01G032400 chrUn 84.727 2966 417 22 1433 4373 94836791 94839745 0.000000e+00 2935.0
20 TraesCS5B01G032400 chr5D 85.050 3291 450 29 1064 4338 369018953 369022217 0.000000e+00 3314.0
21 TraesCS5B01G032400 chr4A 83.343 3614 542 49 982 4567 657097102 657100683 0.000000e+00 3284.0
22 TraesCS5B01G032400 chr4A 84.646 3289 480 22 1062 4338 657201063 657204338 0.000000e+00 3253.0
23 TraesCS5B01G032400 chr3D 84.534 3110 451 24 1062 4153 26586966 26583869 0.000000e+00 3051.0
24 TraesCS5B01G032400 chr3D 81.206 282 42 5 1 273 76381841 76381562 3.170000e-52 217.0
25 TraesCS5B01G032400 chr7A 82.835 3379 548 25 1063 4423 625913060 625909696 0.000000e+00 2998.0
26 TraesCS5B01G032400 chr3A 84.100 3107 470 17 1062 4153 36662495 36659398 0.000000e+00 2979.0
27 TraesCS5B01G032400 chr3A 83.684 3187 465 36 1062 4222 23649210 23646053 0.000000e+00 2953.0
28 TraesCS5B01G032400 chr3A 81.560 282 41 6 1 273 90861866 90861587 6.810000e-54 222.0
29 TraesCS5B01G032400 chr3B 84.068 3107 473 19 1062 4153 44787417 44784318 0.000000e+00 2976.0
30 TraesCS5B01G032400 chr3B 80.496 282 44 4 1 273 123355701 123355422 6.850000e-49 206.0
31 TraesCS5B01G032400 chr2B 96.479 426 13 2 1 424 31021481 31021906 0.000000e+00 702.0
32 TraesCS5B01G032400 chr2B 95.024 422 21 0 1 422 649648491 649648070 0.000000e+00 664.0
33 TraesCS5B01G032400 chr2B 93.632 424 27 0 1 424 788532955 788533378 7.380000e-178 634.0
34 TraesCS5B01G032400 chr1B 96.226 424 13 1 1 421 60595653 60595230 0.000000e+00 691.0
35 TraesCS5B01G032400 chr2A 89.199 287 25 5 1 284 771069554 771069837 2.310000e-93 353.0
36 TraesCS5B01G032400 chr4D 96.552 203 6 1 4847 5048 19970275 19970477 8.380000e-88 335.0
37 TraesCS5B01G032400 chr4D 94.521 73 4 0 4683 4755 19970166 19970238 4.270000e-21 113.0
38 TraesCS5B01G032400 chr4D 94.521 73 4 0 17 89 312585328 312585400 4.270000e-21 113.0
39 TraesCS5B01G032400 chr7B 92.135 89 7 0 1 89 733671333 733671245 5.490000e-25 126.0
40 TraesCS5B01G032400 chr7B 91.765 85 7 0 1 85 399257382 399257466 9.190000e-23 119.0
41 TraesCS5B01G032400 chr1D 100.000 33 0 0 389 421 389330333 389330301 1.570000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G032400 chr5B 35544726 35549947 5221 True 9644.0 9644 100.000000 1 5222 1 chr5B.!!$R1 5221
1 TraesCS5B01G032400 chr5A 29709089 29712445 3356 True 2313.5 4396 95.590000 423 3402 2 chr5A.!!$R2 2979
2 TraesCS5B01G032400 chr5A 29691083 29691616 533 True 433.0 577 94.993000 4656 5222 2 chr5A.!!$R1 566
3 TraesCS5B01G032400 chr6B 64686429 64689704 3275 True 3434.0 3434 85.623000 956 4229 1 chr6B.!!$R2 3273
4 TraesCS5B01G032400 chr6B 15274354 15276917 2563 True 2532.0 2532 84.562000 1586 4152 1 chr6B.!!$R1 2566
5 TraesCS5B01G032400 chr6B 65086590 65090840 4250 True 1630.0 4085 91.148667 983 5222 3 chr6B.!!$R3 4239
6 TraesCS5B01G032400 chr6B 2694535 2695471 936 False 575.0 575 77.989000 1062 1995 1 chr6B.!!$F1 933
7 TraesCS5B01G032400 chr6D 721482 724451 2969 True 3033.0 3033 85.191000 1674 4657 1 chr6D.!!$R2 2983
8 TraesCS5B01G032400 chr6D 420926 424573 3647 True 1866.5 3550 87.697500 1077 5048 2 chr6D.!!$R3 3971
9 TraesCS5B01G032400 chrUn 101627142 101630796 3654 False 3410.0 3410 83.625000 969 4653 1 chrUn.!!$F2 3684
10 TraesCS5B01G032400 chrUn 94836791 94839745 2954 False 2935.0 2935 84.727000 1433 4373 1 chrUn.!!$F1 2940
11 TraesCS5B01G032400 chr5D 369018953 369022217 3264 False 3314.0 3314 85.050000 1064 4338 1 chr5D.!!$F1 3274
12 TraesCS5B01G032400 chr4A 657097102 657100683 3581 False 3284.0 3284 83.343000 982 4567 1 chr4A.!!$F1 3585
13 TraesCS5B01G032400 chr4A 657201063 657204338 3275 False 3253.0 3253 84.646000 1062 4338 1 chr4A.!!$F2 3276
14 TraesCS5B01G032400 chr3D 26583869 26586966 3097 True 3051.0 3051 84.534000 1062 4153 1 chr3D.!!$R1 3091
15 TraesCS5B01G032400 chr7A 625909696 625913060 3364 True 2998.0 2998 82.835000 1063 4423 1 chr7A.!!$R1 3360
16 TraesCS5B01G032400 chr3A 36659398 36662495 3097 True 2979.0 2979 84.100000 1062 4153 1 chr3A.!!$R2 3091
17 TraesCS5B01G032400 chr3A 23646053 23649210 3157 True 2953.0 2953 83.684000 1062 4222 1 chr3A.!!$R1 3160
18 TraesCS5B01G032400 chr3B 44784318 44787417 3099 True 2976.0 2976 84.068000 1062 4153 1 chr3B.!!$R1 3091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.107263 TGCTCCAGCGAAATATGGCA 60.107 50.000 0.00 0.00 45.83 4.92 F
199 200 0.313043 CTGAAGCCTGCAGTGTTTGG 59.687 55.000 13.81 0.00 0.00 3.28 F
205 206 0.313043 CCTGCAGTGTTTGGCTTCTG 59.687 55.000 13.81 0.00 0.00 3.02 F
391 392 0.452184 ACACACAGTATCGAGAGGCG 59.548 55.000 0.00 0.00 42.69 5.52 F
392 393 0.867753 CACACAGTATCGAGAGGCGC 60.868 60.000 0.00 0.00 40.61 6.53 F
1043 1467 1.136984 CCGTCCTGACTACTGCGAC 59.863 63.158 0.00 0.00 0.00 5.19 F
2016 2459 1.669999 GCCAACTGCAGCTATTGGGG 61.670 60.000 27.00 14.58 42.70 4.96 F
3555 4023 1.163420 TGCACAACTACTGCCAACCG 61.163 55.000 0.00 0.00 33.36 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 2272 0.759346 AGCCAACCGATATGAGGGAC 59.241 55.000 0.00 0.0 0.00 4.46 R
2169 2612 0.528924 CTCCGGACATGGACGTGTTA 59.471 55.000 0.00 0.0 33.48 2.41 R
2175 2618 1.473434 GGAATCACTCCGGACATGGAC 60.473 57.143 0.00 0.0 33.37 4.02 R
2663 3111 9.784531 ACTTATTCATGGTCAGGTTCAATATAG 57.215 33.333 0.00 0.0 0.00 1.31 R
2788 3244 9.419297 CAATTCAGACAATGATGACAAATTCTT 57.581 29.630 0.00 0.0 37.89 2.52 R
2990 3458 5.064452 CCAACTGCTGCTAGAGAAATTACAG 59.936 44.000 0.00 0.0 0.00 2.74 R
4165 4652 0.610174 TCTCGTTCTGCTCCATGCTT 59.390 50.000 0.00 0.0 43.37 3.91 R
4712 5268 0.317770 GTTTGTGCACATGGACGGTG 60.318 55.000 22.39 0.0 39.39 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.961326 ATTTTGCAGGAGAAGTAATGGTTAT 57.039 32.000 0.00 0.00 0.00 1.89
25 26 6.757897 TTTGCAGGAGAAGTAATGGTTATG 57.242 37.500 0.00 0.00 0.00 1.90
26 27 5.435686 TGCAGGAGAAGTAATGGTTATGT 57.564 39.130 0.00 0.00 0.00 2.29
27 28 5.428253 TGCAGGAGAAGTAATGGTTATGTC 58.572 41.667 0.00 0.00 0.00 3.06
28 29 5.045942 TGCAGGAGAAGTAATGGTTATGTCA 60.046 40.000 0.00 0.00 0.00 3.58
29 30 5.880332 GCAGGAGAAGTAATGGTTATGTCAA 59.120 40.000 0.00 0.00 0.00 3.18
30 31 6.183360 GCAGGAGAAGTAATGGTTATGTCAAC 60.183 42.308 0.00 0.00 0.00 3.18
31 32 6.878923 CAGGAGAAGTAATGGTTATGTCAACA 59.121 38.462 0.00 0.00 0.00 3.33
32 33 7.554118 CAGGAGAAGTAATGGTTATGTCAACAT 59.446 37.037 0.70 0.70 40.22 2.71
33 34 8.109634 AGGAGAAGTAATGGTTATGTCAACATT 58.890 33.333 0.20 0.00 37.76 2.71
34 35 8.739972 GGAGAAGTAATGGTTATGTCAACATTT 58.260 33.333 0.20 0.00 37.76 2.32
35 36 9.774742 GAGAAGTAATGGTTATGTCAACATTTC 57.225 33.333 0.20 0.00 37.76 2.17
36 37 9.295825 AGAAGTAATGGTTATGTCAACATTTCA 57.704 29.630 0.20 0.00 37.76 2.69
37 38 9.906660 GAAGTAATGGTTATGTCAACATTTCAA 57.093 29.630 0.20 0.00 37.76 2.69
43 44 8.815141 TGGTTATGTCAACATTTCAAAAGATG 57.185 30.769 0.20 0.00 37.76 2.90
44 45 8.637099 TGGTTATGTCAACATTTCAAAAGATGA 58.363 29.630 0.20 0.00 37.76 2.92
45 46 9.643693 GGTTATGTCAACATTTCAAAAGATGAT 57.356 29.630 0.20 0.00 36.50 2.45
49 50 9.767228 ATGTCAACATTTCAAAAGATGATTCAA 57.233 25.926 0.00 0.00 38.03 2.69
50 51 9.597170 TGTCAACATTTCAAAAGATGATTCAAA 57.403 25.926 0.00 0.00 38.03 2.69
60 61 9.643693 TCAAAAGATGATTCAAATCCTAAAAGC 57.356 29.630 0.48 0.00 34.50 3.51
61 62 9.426837 CAAAAGATGATTCAAATCCTAAAAGCA 57.573 29.630 0.48 0.00 34.50 3.91
64 65 9.649167 AAGATGATTCAAATCCTAAAAGCAAAG 57.351 29.630 0.48 0.00 34.50 2.77
65 66 7.763071 AGATGATTCAAATCCTAAAAGCAAAGC 59.237 33.333 0.48 0.00 34.50 3.51
66 67 6.996509 TGATTCAAATCCTAAAAGCAAAGCT 58.003 32.000 0.48 0.00 35.96 3.74
67 68 8.121305 TGATTCAAATCCTAAAAGCAAAGCTA 57.879 30.769 0.00 0.00 34.33 3.32
68 69 8.028938 TGATTCAAATCCTAAAAGCAAAGCTAC 58.971 33.333 0.00 0.00 34.33 3.58
69 70 7.524717 TTCAAATCCTAAAAGCAAAGCTACT 57.475 32.000 0.00 0.00 38.25 2.57
70 71 7.524717 TCAAATCCTAAAAGCAAAGCTACTT 57.475 32.000 0.00 0.00 38.25 2.24
71 72 7.593825 TCAAATCCTAAAAGCAAAGCTACTTC 58.406 34.615 0.00 0.00 38.25 3.01
72 73 7.448469 TCAAATCCTAAAAGCAAAGCTACTTCT 59.552 33.333 0.00 0.00 38.25 2.85
73 74 6.749923 ATCCTAAAAGCAAAGCTACTTCTG 57.250 37.500 0.00 0.00 38.25 3.02
74 75 5.621193 TCCTAAAAGCAAAGCTACTTCTGT 58.379 37.500 0.00 0.00 38.25 3.41
75 76 5.470098 TCCTAAAAGCAAAGCTACTTCTGTG 59.530 40.000 0.00 0.00 38.25 3.66
76 77 4.574599 AAAAGCAAAGCTACTTCTGTGG 57.425 40.909 0.00 0.00 38.25 4.17
77 78 2.938956 AGCAAAGCTACTTCTGTGGT 57.061 45.000 0.00 0.00 36.99 4.16
78 79 4.351874 AAGCAAAGCTACTTCTGTGGTA 57.648 40.909 0.00 0.00 38.25 3.25
79 80 4.559862 AGCAAAGCTACTTCTGTGGTAT 57.440 40.909 0.00 0.00 36.99 2.73
80 81 4.911390 AGCAAAGCTACTTCTGTGGTATT 58.089 39.130 0.00 0.00 36.99 1.89
81 82 5.316987 AGCAAAGCTACTTCTGTGGTATTT 58.683 37.500 0.00 0.00 36.99 1.40
82 83 5.412904 AGCAAAGCTACTTCTGTGGTATTTC 59.587 40.000 0.00 0.00 36.99 2.17
83 84 5.412904 GCAAAGCTACTTCTGTGGTATTTCT 59.587 40.000 0.00 0.00 0.00 2.52
84 85 6.072452 GCAAAGCTACTTCTGTGGTATTTCTT 60.072 38.462 0.00 0.00 0.00 2.52
85 86 7.301054 CAAAGCTACTTCTGTGGTATTTCTTG 58.699 38.462 0.00 0.00 0.00 3.02
86 87 4.938226 AGCTACTTCTGTGGTATTTCTTGC 59.062 41.667 0.00 0.00 0.00 4.01
87 88 4.938226 GCTACTTCTGTGGTATTTCTTGCT 59.062 41.667 0.00 0.00 0.00 3.91
88 89 5.412904 GCTACTTCTGTGGTATTTCTTGCTT 59.587 40.000 0.00 0.00 0.00 3.91
89 90 6.072452 GCTACTTCTGTGGTATTTCTTGCTTT 60.072 38.462 0.00 0.00 0.00 3.51
90 91 7.119262 GCTACTTCTGTGGTATTTCTTGCTTTA 59.881 37.037 0.00 0.00 0.00 1.85
91 92 7.440523 ACTTCTGTGGTATTTCTTGCTTTAG 57.559 36.000 0.00 0.00 0.00 1.85
92 93 5.880054 TCTGTGGTATTTCTTGCTTTAGC 57.120 39.130 0.00 0.00 42.50 3.09
93 94 5.560724 TCTGTGGTATTTCTTGCTTTAGCT 58.439 37.500 3.10 0.00 42.66 3.32
94 95 6.707290 TCTGTGGTATTTCTTGCTTTAGCTA 58.293 36.000 3.10 0.00 42.66 3.32
95 96 6.594159 TCTGTGGTATTTCTTGCTTTAGCTAC 59.406 38.462 3.10 0.00 42.66 3.58
96 97 6.472887 TGTGGTATTTCTTGCTTTAGCTACT 58.527 36.000 3.10 0.00 42.66 2.57
97 98 6.371548 TGTGGTATTTCTTGCTTTAGCTACTG 59.628 38.462 3.10 0.00 42.66 2.74
98 99 5.880332 TGGTATTTCTTGCTTTAGCTACTGG 59.120 40.000 3.10 0.00 42.66 4.00
99 100 5.880887 GGTATTTCTTGCTTTAGCTACTGGT 59.119 40.000 3.10 0.00 42.66 4.00
100 101 5.886960 ATTTCTTGCTTTAGCTACTGGTG 57.113 39.130 3.10 0.00 42.66 4.17
101 102 3.334583 TCTTGCTTTAGCTACTGGTGG 57.665 47.619 3.10 0.00 42.66 4.61
102 103 2.027192 TCTTGCTTTAGCTACTGGTGGG 60.027 50.000 3.10 0.00 42.66 4.61
103 104 0.618458 TGCTTTAGCTACTGGTGGGG 59.382 55.000 3.10 0.00 42.66 4.96
104 105 0.909623 GCTTTAGCTACTGGTGGGGA 59.090 55.000 0.00 0.00 38.21 4.81
105 106 1.134371 GCTTTAGCTACTGGTGGGGAG 60.134 57.143 0.00 0.00 38.21 4.30
106 107 1.486726 CTTTAGCTACTGGTGGGGAGG 59.513 57.143 0.00 0.00 0.00 4.30
107 108 0.714180 TTAGCTACTGGTGGGGAGGA 59.286 55.000 0.00 0.00 0.00 3.71
108 109 0.941963 TAGCTACTGGTGGGGAGGAT 59.058 55.000 0.00 0.00 0.00 3.24
109 110 0.692419 AGCTACTGGTGGGGAGGATG 60.692 60.000 0.00 0.00 0.00 3.51
110 111 0.691078 GCTACTGGTGGGGAGGATGA 60.691 60.000 0.00 0.00 0.00 2.92
111 112 2.042301 GCTACTGGTGGGGAGGATGAT 61.042 57.143 0.00 0.00 0.00 2.45
112 113 2.760025 GCTACTGGTGGGGAGGATGATA 60.760 54.545 0.00 0.00 0.00 2.15
113 114 1.807814 ACTGGTGGGGAGGATGATAC 58.192 55.000 0.00 0.00 0.00 2.24
114 115 1.295292 ACTGGTGGGGAGGATGATACT 59.705 52.381 0.00 0.00 0.00 2.12
115 116 2.522705 ACTGGTGGGGAGGATGATACTA 59.477 50.000 0.00 0.00 0.00 1.82
116 117 3.051341 ACTGGTGGGGAGGATGATACTAA 60.051 47.826 0.00 0.00 0.00 2.24
117 118 3.973973 CTGGTGGGGAGGATGATACTAAA 59.026 47.826 0.00 0.00 0.00 1.85
118 119 4.376223 TGGTGGGGAGGATGATACTAAAA 58.624 43.478 0.00 0.00 0.00 1.52
119 120 4.165372 TGGTGGGGAGGATGATACTAAAAC 59.835 45.833 0.00 0.00 0.00 2.43
120 121 4.412528 GGTGGGGAGGATGATACTAAAACT 59.587 45.833 0.00 0.00 0.00 2.66
121 122 5.368989 GTGGGGAGGATGATACTAAAACTG 58.631 45.833 0.00 0.00 0.00 3.16
122 123 4.412199 TGGGGAGGATGATACTAAAACTGG 59.588 45.833 0.00 0.00 0.00 4.00
123 124 4.412528 GGGGAGGATGATACTAAAACTGGT 59.587 45.833 0.00 0.00 0.00 4.00
124 125 5.368989 GGGAGGATGATACTAAAACTGGTG 58.631 45.833 0.00 0.00 0.00 4.17
125 126 4.816925 GGAGGATGATACTAAAACTGGTGC 59.183 45.833 0.00 0.00 0.00 5.01
126 127 5.396884 GGAGGATGATACTAAAACTGGTGCT 60.397 44.000 0.00 0.00 0.00 4.40
127 128 5.675538 AGGATGATACTAAAACTGGTGCTC 58.324 41.667 0.00 0.00 0.00 4.26
128 129 4.816925 GGATGATACTAAAACTGGTGCTCC 59.183 45.833 0.00 0.00 0.00 4.70
129 130 4.901197 TGATACTAAAACTGGTGCTCCA 57.099 40.909 7.39 7.39 42.05 3.86
139 140 1.667236 TGGTGCTCCAGCGAAATATG 58.333 50.000 2.64 0.00 45.83 1.78
140 141 0.947244 GGTGCTCCAGCGAAATATGG 59.053 55.000 0.00 0.00 45.83 2.74
141 142 0.308993 GTGCTCCAGCGAAATATGGC 59.691 55.000 0.00 0.00 45.83 4.40
142 143 0.107263 TGCTCCAGCGAAATATGGCA 60.107 50.000 0.00 0.00 45.83 4.92
143 144 1.242076 GCTCCAGCGAAATATGGCAT 58.758 50.000 4.88 4.88 36.47 4.40
144 145 1.068748 GCTCCAGCGAAATATGGCATG 60.069 52.381 10.98 0.00 36.47 4.06
145 146 2.224606 CTCCAGCGAAATATGGCATGT 58.775 47.619 10.98 0.00 36.47 3.21
146 147 2.620115 CTCCAGCGAAATATGGCATGTT 59.380 45.455 10.98 6.99 36.47 2.71
147 148 2.358582 TCCAGCGAAATATGGCATGTTG 59.641 45.455 10.98 0.84 36.47 3.33
148 149 2.099592 CCAGCGAAATATGGCATGTTGT 59.900 45.455 10.98 0.98 31.86 3.32
149 150 3.365832 CAGCGAAATATGGCATGTTGTC 58.634 45.455 10.98 9.15 31.86 3.18
150 151 3.065786 CAGCGAAATATGGCATGTTGTCT 59.934 43.478 10.98 5.30 31.86 3.41
151 152 3.696051 AGCGAAATATGGCATGTTGTCTT 59.304 39.130 10.98 0.00 31.86 3.01
152 153 4.037690 GCGAAATATGGCATGTTGTCTTC 58.962 43.478 10.98 3.40 0.00 2.87
153 154 4.601019 CGAAATATGGCATGTTGTCTTCC 58.399 43.478 10.98 0.00 0.00 3.46
154 155 4.096231 CGAAATATGGCATGTTGTCTTCCA 59.904 41.667 10.98 0.00 0.00 3.53
155 156 4.989279 AATATGGCATGTTGTCTTCCAC 57.011 40.909 10.98 0.00 0.00 4.02
156 157 2.592102 ATGGCATGTTGTCTTCCACT 57.408 45.000 0.00 0.00 0.00 4.00
157 158 2.363306 TGGCATGTTGTCTTCCACTT 57.637 45.000 0.00 0.00 0.00 3.16
158 159 3.500448 TGGCATGTTGTCTTCCACTTA 57.500 42.857 0.00 0.00 0.00 2.24
159 160 3.826524 TGGCATGTTGTCTTCCACTTAA 58.173 40.909 0.00 0.00 0.00 1.85
160 161 4.211125 TGGCATGTTGTCTTCCACTTAAA 58.789 39.130 0.00 0.00 0.00 1.52
161 162 4.832266 TGGCATGTTGTCTTCCACTTAAAT 59.168 37.500 0.00 0.00 0.00 1.40
162 163 6.007076 TGGCATGTTGTCTTCCACTTAAATA 58.993 36.000 0.00 0.00 0.00 1.40
163 164 6.663093 TGGCATGTTGTCTTCCACTTAAATAT 59.337 34.615 0.00 0.00 0.00 1.28
164 165 6.974622 GGCATGTTGTCTTCCACTTAAATATG 59.025 38.462 0.00 0.00 0.00 1.78
165 166 7.362920 GGCATGTTGTCTTCCACTTAAATATGT 60.363 37.037 0.00 0.00 0.00 2.29
166 167 8.028938 GCATGTTGTCTTCCACTTAAATATGTT 58.971 33.333 0.00 0.00 0.00 2.71
167 168 9.912634 CATGTTGTCTTCCACTTAAATATGTTT 57.087 29.630 0.00 0.00 0.00 2.83
188 189 8.232913 TGTTTACAAGTTAATTTCTGAAGCCT 57.767 30.769 0.00 0.00 0.00 4.58
189 190 8.134895 TGTTTACAAGTTAATTTCTGAAGCCTG 58.865 33.333 0.00 0.00 0.00 4.85
190 191 5.126396 ACAAGTTAATTTCTGAAGCCTGC 57.874 39.130 0.00 0.00 0.00 4.85
191 192 4.584325 ACAAGTTAATTTCTGAAGCCTGCA 59.416 37.500 0.00 0.00 0.00 4.41
192 193 5.159209 CAAGTTAATTTCTGAAGCCTGCAG 58.841 41.667 6.78 6.78 34.71 4.41
193 194 4.401925 AGTTAATTTCTGAAGCCTGCAGT 58.598 39.130 13.81 0.00 34.98 4.40
194 195 4.217118 AGTTAATTTCTGAAGCCTGCAGTG 59.783 41.667 13.81 5.37 34.98 3.66
195 196 2.283145 ATTTCTGAAGCCTGCAGTGT 57.717 45.000 13.81 0.00 34.98 3.55
196 197 2.057137 TTTCTGAAGCCTGCAGTGTT 57.943 45.000 13.81 5.15 34.98 3.32
197 198 2.057137 TTCTGAAGCCTGCAGTGTTT 57.943 45.000 13.81 8.41 34.98 2.83
198 199 1.311859 TCTGAAGCCTGCAGTGTTTG 58.688 50.000 13.81 0.00 34.98 2.93
199 200 0.313043 CTGAAGCCTGCAGTGTTTGG 59.687 55.000 13.81 0.00 0.00 3.28
200 201 1.006922 GAAGCCTGCAGTGTTTGGC 60.007 57.895 13.81 8.76 45.21 4.52
202 203 3.132084 GCCTGCAGTGTTTGGCTT 58.868 55.556 13.81 0.00 41.92 4.35
203 204 1.006922 GCCTGCAGTGTTTGGCTTC 60.007 57.895 13.81 0.00 41.92 3.86
204 205 1.458639 GCCTGCAGTGTTTGGCTTCT 61.459 55.000 13.81 0.00 41.92 2.85
205 206 0.313043 CCTGCAGTGTTTGGCTTCTG 59.687 55.000 13.81 0.00 0.00 3.02
206 207 1.311859 CTGCAGTGTTTGGCTTCTGA 58.688 50.000 5.25 0.00 0.00 3.27
207 208 1.266175 CTGCAGTGTTTGGCTTCTGAG 59.734 52.381 5.25 0.00 0.00 3.35
208 209 1.312815 GCAGTGTTTGGCTTCTGAGT 58.687 50.000 0.00 0.00 0.00 3.41
209 210 2.158827 TGCAGTGTTTGGCTTCTGAGTA 60.159 45.455 0.00 0.00 0.00 2.59
210 211 2.224314 GCAGTGTTTGGCTTCTGAGTAC 59.776 50.000 0.00 0.00 0.00 2.73
211 212 3.733337 CAGTGTTTGGCTTCTGAGTACT 58.267 45.455 0.00 0.00 0.00 2.73
212 213 4.130118 CAGTGTTTGGCTTCTGAGTACTT 58.870 43.478 0.00 0.00 0.00 2.24
213 214 4.576463 CAGTGTTTGGCTTCTGAGTACTTT 59.424 41.667 0.00 0.00 0.00 2.66
214 215 4.576463 AGTGTTTGGCTTCTGAGTACTTTG 59.424 41.667 0.00 0.00 0.00 2.77
215 216 3.882888 TGTTTGGCTTCTGAGTACTTTGG 59.117 43.478 0.00 0.00 0.00 3.28
216 217 3.857157 TTGGCTTCTGAGTACTTTGGT 57.143 42.857 0.00 0.00 0.00 3.67
217 218 3.857157 TGGCTTCTGAGTACTTTGGTT 57.143 42.857 0.00 0.00 0.00 3.67
218 219 3.740115 TGGCTTCTGAGTACTTTGGTTC 58.260 45.455 0.00 0.00 0.00 3.62
219 220 3.135712 TGGCTTCTGAGTACTTTGGTTCA 59.864 43.478 0.00 0.00 0.00 3.18
220 221 3.498777 GGCTTCTGAGTACTTTGGTTCAC 59.501 47.826 0.00 0.00 0.00 3.18
221 222 3.498777 GCTTCTGAGTACTTTGGTTCACC 59.501 47.826 0.00 0.00 0.00 4.02
222 223 4.743955 GCTTCTGAGTACTTTGGTTCACCT 60.744 45.833 0.00 0.00 36.82 4.00
223 224 4.336889 TCTGAGTACTTTGGTTCACCTG 57.663 45.455 0.00 0.00 36.82 4.00
224 225 3.964688 TCTGAGTACTTTGGTTCACCTGA 59.035 43.478 0.00 0.00 36.82 3.86
225 226 4.039245 TCTGAGTACTTTGGTTCACCTGAG 59.961 45.833 0.00 0.00 36.82 3.35
226 227 3.964688 TGAGTACTTTGGTTCACCTGAGA 59.035 43.478 0.00 0.00 36.82 3.27
227 228 4.407621 TGAGTACTTTGGTTCACCTGAGAA 59.592 41.667 0.00 0.00 36.82 2.87
228 229 5.071788 TGAGTACTTTGGTTCACCTGAGAAT 59.928 40.000 0.00 0.00 36.82 2.40
229 230 5.308825 AGTACTTTGGTTCACCTGAGAATG 58.691 41.667 0.00 0.00 36.82 2.67
230 231 3.490348 ACTTTGGTTCACCTGAGAATGG 58.510 45.455 0.00 0.00 36.82 3.16
231 232 3.117512 ACTTTGGTTCACCTGAGAATGGT 60.118 43.478 0.00 0.00 38.53 3.55
232 233 3.593442 TTGGTTCACCTGAGAATGGTT 57.407 42.857 0.00 0.00 35.28 3.67
233 234 3.140325 TGGTTCACCTGAGAATGGTTC 57.860 47.619 0.00 0.00 35.28 3.62
234 235 2.441375 TGGTTCACCTGAGAATGGTTCA 59.559 45.455 0.00 0.00 35.28 3.18
235 236 3.074390 TGGTTCACCTGAGAATGGTTCAT 59.926 43.478 0.00 0.00 35.28 2.57
236 237 4.082125 GGTTCACCTGAGAATGGTTCATT 58.918 43.478 0.00 0.00 36.72 2.57
237 238 4.082571 GGTTCACCTGAGAATGGTTCATTG 60.083 45.833 0.00 0.00 33.90 2.82
238 239 4.639078 TCACCTGAGAATGGTTCATTGA 57.361 40.909 0.00 0.00 33.90 2.57
239 240 5.183530 TCACCTGAGAATGGTTCATTGAT 57.816 39.130 0.00 0.00 33.90 2.57
240 241 5.188434 TCACCTGAGAATGGTTCATTGATC 58.812 41.667 0.00 0.00 33.90 2.92
241 242 4.945543 CACCTGAGAATGGTTCATTGATCA 59.054 41.667 0.00 0.00 33.90 2.92
242 243 5.593095 CACCTGAGAATGGTTCATTGATCAT 59.407 40.000 0.00 0.00 33.90 2.45
243 244 6.769341 CACCTGAGAATGGTTCATTGATCATA 59.231 38.462 0.00 0.00 33.90 2.15
244 245 6.769822 ACCTGAGAATGGTTCATTGATCATAC 59.230 38.462 0.00 0.00 33.90 2.39
245 246 6.206243 CCTGAGAATGGTTCATTGATCATACC 59.794 42.308 0.00 3.17 33.90 2.73
246 247 6.903516 TGAGAATGGTTCATTGATCATACCT 58.096 36.000 14.24 6.15 33.90 3.08
247 248 7.348815 TGAGAATGGTTCATTGATCATACCTT 58.651 34.615 14.24 8.12 33.90 3.50
248 249 8.493607 TGAGAATGGTTCATTGATCATACCTTA 58.506 33.333 14.24 0.00 33.90 2.69
249 250 8.682936 AGAATGGTTCATTGATCATACCTTAC 57.317 34.615 14.24 2.94 33.90 2.34
250 251 7.721399 AGAATGGTTCATTGATCATACCTTACC 59.279 37.037 14.24 10.12 33.90 2.85
251 252 6.320434 TGGTTCATTGATCATACCTTACCA 57.680 37.500 14.24 11.94 0.00 3.25
252 253 6.119536 TGGTTCATTGATCATACCTTACCAC 58.880 40.000 14.24 0.00 0.00 4.16
253 254 6.119536 GGTTCATTGATCATACCTTACCACA 58.880 40.000 0.00 0.00 0.00 4.17
254 255 6.772716 GGTTCATTGATCATACCTTACCACAT 59.227 38.462 0.00 0.00 0.00 3.21
255 256 7.255242 GGTTCATTGATCATACCTTACCACATG 60.255 40.741 0.00 0.00 0.00 3.21
256 257 5.764686 TCATTGATCATACCTTACCACATGC 59.235 40.000 0.00 0.00 0.00 4.06
257 258 4.769345 TGATCATACCTTACCACATGCA 57.231 40.909 0.00 0.00 0.00 3.96
258 259 4.707105 TGATCATACCTTACCACATGCAG 58.293 43.478 0.00 0.00 0.00 4.41
259 260 4.164030 TGATCATACCTTACCACATGCAGT 59.836 41.667 0.00 0.00 0.00 4.40
260 261 5.365314 TGATCATACCTTACCACATGCAGTA 59.635 40.000 0.00 0.00 0.00 2.74
261 262 5.887214 TCATACCTTACCACATGCAGTAT 57.113 39.130 0.00 0.00 0.00 2.12
262 263 5.610398 TCATACCTTACCACATGCAGTATG 58.390 41.667 9.49 9.49 42.68 2.39
284 285 7.630242 ATGTCCGAACATAAAAATGATGTCT 57.370 32.000 0.00 0.00 44.38 3.41
285 286 7.447374 TGTCCGAACATAAAAATGATGTCTT 57.553 32.000 0.00 0.00 36.50 3.01
286 287 7.526608 TGTCCGAACATAAAAATGATGTCTTC 58.473 34.615 0.00 0.00 36.50 2.87
287 288 6.967199 GTCCGAACATAAAAATGATGTCTTCC 59.033 38.462 0.00 0.00 36.50 3.46
288 289 6.884295 TCCGAACATAAAAATGATGTCTTCCT 59.116 34.615 0.00 0.00 36.50 3.36
289 290 6.968904 CCGAACATAAAAATGATGTCTTCCTG 59.031 38.462 0.00 0.00 36.50 3.86
290 291 6.470235 CGAACATAAAAATGATGTCTTCCTGC 59.530 38.462 0.00 0.00 36.50 4.85
291 292 7.472334 AACATAAAAATGATGTCTTCCTGCT 57.528 32.000 0.00 0.00 36.50 4.24
292 293 7.472334 ACATAAAAATGATGTCTTCCTGCTT 57.528 32.000 0.00 0.00 31.84 3.91
293 294 7.542025 ACATAAAAATGATGTCTTCCTGCTTC 58.458 34.615 0.00 0.00 31.84 3.86
294 295 5.397142 AAAAATGATGTCTTCCTGCTTCC 57.603 39.130 0.00 0.00 0.00 3.46
295 296 3.726557 AATGATGTCTTCCTGCTTCCA 57.273 42.857 0.00 0.00 0.00 3.53
296 297 2.479566 TGATGTCTTCCTGCTTCCAC 57.520 50.000 0.00 0.00 0.00 4.02
297 298 1.699083 TGATGTCTTCCTGCTTCCACA 59.301 47.619 0.00 0.00 0.00 4.17
298 299 2.306805 TGATGTCTTCCTGCTTCCACAT 59.693 45.455 0.00 0.00 0.00 3.21
299 300 2.957402 TGTCTTCCTGCTTCCACATT 57.043 45.000 0.00 0.00 0.00 2.71
300 301 3.228188 TGTCTTCCTGCTTCCACATTT 57.772 42.857 0.00 0.00 0.00 2.32
301 302 3.149196 TGTCTTCCTGCTTCCACATTTC 58.851 45.455 0.00 0.00 0.00 2.17
302 303 3.181440 TGTCTTCCTGCTTCCACATTTCT 60.181 43.478 0.00 0.00 0.00 2.52
303 304 4.041567 TGTCTTCCTGCTTCCACATTTCTA 59.958 41.667 0.00 0.00 0.00 2.10
304 305 4.393371 GTCTTCCTGCTTCCACATTTCTAC 59.607 45.833 0.00 0.00 0.00 2.59
305 306 4.041567 TCTTCCTGCTTCCACATTTCTACA 59.958 41.667 0.00 0.00 0.00 2.74
306 307 3.674997 TCCTGCTTCCACATTTCTACAC 58.325 45.455 0.00 0.00 0.00 2.90
307 308 3.072330 TCCTGCTTCCACATTTCTACACA 59.928 43.478 0.00 0.00 0.00 3.72
308 309 3.438087 CCTGCTTCCACATTTCTACACAG 59.562 47.826 0.00 0.00 0.00 3.66
309 310 4.067896 CTGCTTCCACATTTCTACACAGT 58.932 43.478 0.00 0.00 0.00 3.55
310 311 5.222079 TGCTTCCACATTTCTACACAGTA 57.778 39.130 0.00 0.00 0.00 2.74
311 312 4.994852 TGCTTCCACATTTCTACACAGTAC 59.005 41.667 0.00 0.00 0.00 2.73
312 313 4.994852 GCTTCCACATTTCTACACAGTACA 59.005 41.667 0.00 0.00 0.00 2.90
313 314 5.468746 GCTTCCACATTTCTACACAGTACAA 59.531 40.000 0.00 0.00 0.00 2.41
314 315 6.347725 GCTTCCACATTTCTACACAGTACAAG 60.348 42.308 0.00 0.00 0.00 3.16
315 316 5.547465 TCCACATTTCTACACAGTACAAGG 58.453 41.667 0.00 0.00 0.00 3.61
316 317 5.071250 TCCACATTTCTACACAGTACAAGGT 59.929 40.000 0.00 0.00 0.00 3.50
317 318 5.763204 CCACATTTCTACACAGTACAAGGTT 59.237 40.000 0.00 0.00 0.00 3.50
318 319 6.262273 CCACATTTCTACACAGTACAAGGTTT 59.738 38.462 0.00 0.00 0.00 3.27
319 320 7.201785 CCACATTTCTACACAGTACAAGGTTTT 60.202 37.037 0.00 0.00 0.00 2.43
320 321 8.832521 CACATTTCTACACAGTACAAGGTTTTA 58.167 33.333 0.00 0.00 0.00 1.52
321 322 9.569122 ACATTTCTACACAGTACAAGGTTTTAT 57.431 29.630 0.00 0.00 0.00 1.40
323 324 9.787435 ATTTCTACACAGTACAAGGTTTTATCA 57.213 29.630 0.00 0.00 0.00 2.15
324 325 8.827177 TTCTACACAGTACAAGGTTTTATCAG 57.173 34.615 0.00 0.00 0.00 2.90
325 326 5.941948 ACACAGTACAAGGTTTTATCAGC 57.058 39.130 0.00 0.00 0.00 4.26
326 327 5.373222 ACACAGTACAAGGTTTTATCAGCA 58.627 37.500 0.00 0.00 0.00 4.41
327 328 6.003950 ACACAGTACAAGGTTTTATCAGCAT 58.996 36.000 0.00 0.00 0.00 3.79
328 329 6.072508 ACACAGTACAAGGTTTTATCAGCATG 60.073 38.462 0.00 0.00 37.54 4.06
347 348 6.910536 GCATGAGCTAATAACACTTACTGT 57.089 37.500 0.00 0.00 37.91 3.55
349 350 8.420374 GCATGAGCTAATAACACTTACTGTAA 57.580 34.615 0.00 0.00 37.91 2.41
350 351 8.879759 GCATGAGCTAATAACACTTACTGTAAA 58.120 33.333 0.00 0.00 37.91 2.01
362 363 9.850198 AACACTTACTGTAAATAGTAAACCCAA 57.150 29.630 1.46 0.00 41.25 4.12
376 377 9.693739 ATAGTAAACCCAATTCATATGAACACA 57.306 29.630 20.19 0.00 36.80 3.72
377 378 7.826690 AGTAAACCCAATTCATATGAACACAC 58.173 34.615 20.19 9.59 36.80 3.82
378 379 6.662865 AAACCCAATTCATATGAACACACA 57.337 33.333 20.19 0.00 36.80 3.72
379 380 5.902613 ACCCAATTCATATGAACACACAG 57.097 39.130 20.19 9.73 36.80 3.66
380 381 5.324409 ACCCAATTCATATGAACACACAGT 58.676 37.500 20.19 10.30 36.80 3.55
381 382 6.480763 ACCCAATTCATATGAACACACAGTA 58.519 36.000 20.19 0.00 36.80 2.74
382 383 7.118723 ACCCAATTCATATGAACACACAGTAT 58.881 34.615 20.19 0.00 36.80 2.12
383 384 7.283127 ACCCAATTCATATGAACACACAGTATC 59.717 37.037 20.19 0.00 36.80 2.24
384 385 7.347448 CCAATTCATATGAACACACAGTATCG 58.653 38.462 20.19 0.00 36.80 2.92
385 386 7.224557 CCAATTCATATGAACACACAGTATCGA 59.775 37.037 20.19 0.00 36.80 3.59
386 387 7.936950 ATTCATATGAACACACAGTATCGAG 57.063 36.000 20.19 0.00 36.80 4.04
387 388 6.693315 TCATATGAACACACAGTATCGAGA 57.307 37.500 1.98 0.00 0.00 4.04
388 389 6.729187 TCATATGAACACACAGTATCGAGAG 58.271 40.000 1.98 0.00 0.00 3.20
389 390 3.850122 TGAACACACAGTATCGAGAGG 57.150 47.619 0.00 0.00 0.00 3.69
390 391 2.094700 TGAACACACAGTATCGAGAGGC 60.095 50.000 0.00 0.00 0.00 4.70
391 392 0.452184 ACACACAGTATCGAGAGGCG 59.548 55.000 0.00 0.00 42.69 5.52
392 393 0.867753 CACACAGTATCGAGAGGCGC 60.868 60.000 0.00 0.00 40.61 6.53
393 394 1.655654 CACAGTATCGAGAGGCGCG 60.656 63.158 0.00 0.00 40.61 6.86
394 395 2.050895 CAGTATCGAGAGGCGCGG 60.051 66.667 8.83 0.00 40.61 6.46
395 396 3.967335 AGTATCGAGAGGCGCGGC 61.967 66.667 27.06 27.06 40.61 6.53
421 422 3.053896 GCGCGGGGTTTGCTAGTT 61.054 61.111 8.83 0.00 0.00 2.24
436 437 4.766375 TGCTAGTTATTGTTAGACCAGGC 58.234 43.478 0.00 0.00 0.00 4.85
465 466 1.400142 CAGGCCAATATCGCGTCAAAA 59.600 47.619 5.01 0.00 0.00 2.44
475 476 2.252260 CGTCAAAACCCGCAGCTG 59.748 61.111 10.11 10.11 0.00 4.24
494 495 2.541346 CTGCTAAGATGGCATGTACGTG 59.459 50.000 3.81 10.89 39.07 4.49
518 519 6.930164 TGCATTAGAAACATTCAGCAAATTGT 59.070 30.769 0.00 0.00 0.00 2.71
537 538 9.318041 CAAATTGTAGTAAACAGATGAGAAACG 57.682 33.333 0.00 0.00 39.87 3.60
565 566 4.701651 TGCTAATCTTTCACCCAAGATGTG 59.298 41.667 0.00 0.00 41.78 3.21
571 572 3.576078 TTCACCCAAGATGTGAACACT 57.424 42.857 6.51 0.00 45.19 3.55
572 573 2.849942 TCACCCAAGATGTGAACACTG 58.150 47.619 6.51 0.00 39.66 3.66
573 574 2.172505 TCACCCAAGATGTGAACACTGT 59.827 45.455 6.51 0.00 39.66 3.55
574 575 2.951642 CACCCAAGATGTGAACACTGTT 59.048 45.455 6.51 0.00 35.74 3.16
575 576 2.951642 ACCCAAGATGTGAACACTGTTG 59.048 45.455 0.00 6.91 0.00 3.33
576 577 3.213506 CCCAAGATGTGAACACTGTTGA 58.786 45.455 0.00 0.00 0.00 3.18
577 578 3.822735 CCCAAGATGTGAACACTGTTGAT 59.177 43.478 0.00 0.00 0.00 2.57
578 579 4.279169 CCCAAGATGTGAACACTGTTGATT 59.721 41.667 0.00 0.00 0.00 2.57
579 580 5.221303 CCCAAGATGTGAACACTGTTGATTT 60.221 40.000 0.00 0.00 0.00 2.17
580 581 5.916883 CCAAGATGTGAACACTGTTGATTTC 59.083 40.000 0.00 0.00 0.00 2.17
581 582 5.695851 AGATGTGAACACTGTTGATTTCC 57.304 39.130 0.00 0.00 0.00 3.13
582 583 5.380043 AGATGTGAACACTGTTGATTTCCT 58.620 37.500 0.00 0.00 0.00 3.36
583 584 4.898829 TGTGAACACTGTTGATTTCCTG 57.101 40.909 0.00 0.00 0.00 3.86
584 585 4.269183 TGTGAACACTGTTGATTTCCTGT 58.731 39.130 0.00 0.00 0.00 4.00
585 586 4.096231 TGTGAACACTGTTGATTTCCTGTG 59.904 41.667 0.00 0.00 36.80 3.66
586 587 4.335315 GTGAACACTGTTGATTTCCTGTGA 59.665 41.667 0.00 0.00 35.34 3.58
587 588 4.946772 TGAACACTGTTGATTTCCTGTGAA 59.053 37.500 0.00 0.00 35.34 3.18
588 589 5.593909 TGAACACTGTTGATTTCCTGTGAAT 59.406 36.000 0.00 0.00 35.34 2.57
589 590 6.770303 TGAACACTGTTGATTTCCTGTGAATA 59.230 34.615 0.00 0.00 35.34 1.75
590 591 7.448161 TGAACACTGTTGATTTCCTGTGAATAT 59.552 33.333 0.00 0.00 35.34 1.28
591 592 8.862325 AACACTGTTGATTTCCTGTGAATATA 57.138 30.769 0.00 0.00 35.34 0.86
592 593 9.466497 AACACTGTTGATTTCCTGTGAATATAT 57.534 29.630 0.00 0.00 35.34 0.86
633 1057 5.048504 TCAAACTGAAATGTGAAGATGGAGC 60.049 40.000 0.00 0.00 0.00 4.70
648 1072 4.835056 AGATGGAGCTATGTAGTATGTGCA 59.165 41.667 0.00 0.00 0.00 4.57
729 1153 7.830739 AGAACAATAAAATTCAAGTAGGCAGG 58.169 34.615 0.00 0.00 0.00 4.85
730 1154 7.451566 AGAACAATAAAATTCAAGTAGGCAGGT 59.548 33.333 0.00 0.00 0.00 4.00
799 1223 5.529430 ACGTGAACACATGGAAAATCTTGTA 59.471 36.000 0.00 0.00 0.00 2.41
800 1224 6.079763 CGTGAACACATGGAAAATCTTGTAG 58.920 40.000 0.00 0.00 0.00 2.74
801 1225 6.293407 CGTGAACACATGGAAAATCTTGTAGT 60.293 38.462 0.00 0.00 0.00 2.73
802 1226 7.078228 GTGAACACATGGAAAATCTTGTAGTC 58.922 38.462 0.00 0.00 0.00 2.59
803 1227 6.206634 TGAACACATGGAAAATCTTGTAGTCC 59.793 38.462 0.00 0.00 0.00 3.85
805 1229 4.094887 CACATGGAAAATCTTGTAGTCCCG 59.905 45.833 0.00 0.00 0.00 5.14
806 1230 4.261801 CATGGAAAATCTTGTAGTCCCGT 58.738 43.478 0.00 0.00 0.00 5.28
807 1231 3.934068 TGGAAAATCTTGTAGTCCCGTC 58.066 45.455 0.00 0.00 0.00 4.79
808 1232 3.325425 TGGAAAATCTTGTAGTCCCGTCA 59.675 43.478 0.00 0.00 0.00 4.35
809 1233 4.202377 TGGAAAATCTTGTAGTCCCGTCAA 60.202 41.667 0.00 0.00 0.00 3.18
810 1234 4.758165 GGAAAATCTTGTAGTCCCGTCAAA 59.242 41.667 0.00 0.00 0.00 2.69
811 1235 5.414765 GGAAAATCTTGTAGTCCCGTCAAAT 59.585 40.000 0.00 0.00 0.00 2.32
812 1236 6.072119 GGAAAATCTTGTAGTCCCGTCAAATT 60.072 38.462 0.00 0.00 0.00 1.82
867 1291 5.314923 CCACAAGAGGGATTTGTACATTG 57.685 43.478 0.00 0.00 36.67 2.82
868 1292 4.766891 CCACAAGAGGGATTTGTACATTGT 59.233 41.667 0.00 0.00 36.67 2.71
869 1293 5.243730 CCACAAGAGGGATTTGTACATTGTT 59.756 40.000 0.00 0.00 36.67 2.83
870 1294 6.151691 CACAAGAGGGATTTGTACATTGTTG 58.848 40.000 0.00 0.00 36.67 3.33
871 1295 5.243730 ACAAGAGGGATTTGTACATTGTTGG 59.756 40.000 0.00 0.00 37.02 3.77
872 1296 5.255397 AGAGGGATTTGTACATTGTTGGA 57.745 39.130 0.00 0.00 0.00 3.53
873 1297 5.640147 AGAGGGATTTGTACATTGTTGGAA 58.360 37.500 0.00 0.00 0.00 3.53
874 1298 6.256053 AGAGGGATTTGTACATTGTTGGAAT 58.744 36.000 0.00 0.00 0.00 3.01
875 1299 7.410174 AGAGGGATTTGTACATTGTTGGAATA 58.590 34.615 0.00 0.00 0.00 1.75
876 1300 8.061304 AGAGGGATTTGTACATTGTTGGAATAT 58.939 33.333 0.00 0.00 0.00 1.28
877 1301 8.608185 AGGGATTTGTACATTGTTGGAATATT 57.392 30.769 0.00 0.00 0.00 1.28
878 1302 9.707957 AGGGATTTGTACATTGTTGGAATATTA 57.292 29.630 0.00 0.00 0.00 0.98
879 1303 9.965824 GGGATTTGTACATTGTTGGAATATTAG 57.034 33.333 0.00 0.00 0.00 1.73
880 1304 9.463443 GGATTTGTACATTGTTGGAATATTAGC 57.537 33.333 0.00 0.00 0.00 3.09
882 1306 9.801873 ATTTGTACATTGTTGGAATATTAGCAC 57.198 29.630 0.00 0.00 0.00 4.40
883 1307 7.929941 TGTACATTGTTGGAATATTAGCACA 57.070 32.000 0.00 0.00 0.00 4.57
884 1308 8.341892 TGTACATTGTTGGAATATTAGCACAA 57.658 30.769 0.00 7.78 0.00 3.33
926 1350 2.310577 GATCACGCAAACACAAGAAGC 58.689 47.619 0.00 0.00 0.00 3.86
931 1355 4.693095 TCACGCAAACACAAGAAGCATATA 59.307 37.500 0.00 0.00 0.00 0.86
932 1356 4.788100 CACGCAAACACAAGAAGCATATAC 59.212 41.667 0.00 0.00 0.00 1.47
933 1357 4.695455 ACGCAAACACAAGAAGCATATACT 59.305 37.500 0.00 0.00 0.00 2.12
934 1358 5.023920 CGCAAACACAAGAAGCATATACTG 58.976 41.667 0.00 0.00 0.00 2.74
936 1360 6.381801 GCAAACACAAGAAGCATATACTGTT 58.618 36.000 0.00 0.00 0.00 3.16
937 1361 7.526608 GCAAACACAAGAAGCATATACTGTTA 58.473 34.615 0.00 0.00 0.00 2.41
939 1363 9.708222 CAAACACAAGAAGCATATACTGTTATC 57.292 33.333 0.00 0.00 0.00 1.75
941 1365 7.564793 ACACAAGAAGCATATACTGTTATCCA 58.435 34.615 0.00 0.00 0.00 3.41
942 1366 8.213679 ACACAAGAAGCATATACTGTTATCCAT 58.786 33.333 0.00 0.00 0.00 3.41
943 1367 9.710900 CACAAGAAGCATATACTGTTATCCATA 57.289 33.333 0.00 0.00 0.00 2.74
950 1374 8.244494 GCATATACTGTTATCCATATATGCGG 57.756 38.462 15.49 1.35 46.20 5.69
951 1375 8.088365 GCATATACTGTTATCCATATATGCGGA 58.912 37.037 15.49 0.63 46.20 5.54
952 1376 9.631452 CATATACTGTTATCCATATATGCGGAG 57.369 37.037 7.24 0.00 33.50 4.63
975 1399 2.235402 TGCTACTACTACTTGCCAACCC 59.765 50.000 0.00 0.00 0.00 4.11
1009 1433 1.826720 CAATGGGGGTCATGAGTTTGG 59.173 52.381 0.00 0.00 35.99 3.28
1015 1439 1.670811 GGGTCATGAGTTTGGTATGCG 59.329 52.381 0.00 0.00 0.00 4.73
1043 1467 1.136984 CCGTCCTGACTACTGCGAC 59.863 63.158 0.00 0.00 0.00 5.19
1439 1866 3.315191 GGACTGCTAAACAACAAGCTTGA 59.685 43.478 32.50 8.29 39.53 3.02
1664 2094 3.000727 CCAGAAACCTCATCAACGGTAC 58.999 50.000 0.00 0.00 32.07 3.34
1836 2272 4.864806 CCGTCCTCAATATCCAACATATCG 59.135 45.833 0.00 0.00 0.00 2.92
2016 2459 1.669999 GCCAACTGCAGCTATTGGGG 61.670 60.000 27.00 14.58 42.70 4.96
2151 2594 6.998074 CAGATATAGGCAATTTGGTTGGTCTA 59.002 38.462 0.00 0.00 38.29 2.59
2169 2612 5.221641 TGGTCTACAAACACTTGTGATAGCT 60.222 40.000 7.83 0.00 45.53 3.32
2175 2618 5.050363 ACAAACACTTGTGATAGCTAACACG 60.050 40.000 23.99 15.55 44.28 4.49
2663 3111 5.066505 CACTGACAAATATAAAGGGGCTCAC 59.933 44.000 0.00 0.00 0.00 3.51
2990 3458 2.028112 GGAAAAAGATGCCAAAGTCCCC 60.028 50.000 0.00 0.00 0.00 4.81
3448 3916 3.870538 TGGATAGCTGGCTTCATCAAT 57.129 42.857 0.00 0.00 0.00 2.57
3496 3964 2.530151 TCAGCCTTGCCCAGAGGT 60.530 61.111 0.00 0.00 36.63 3.85
3555 4023 1.163420 TGCACAACTACTGCCAACCG 61.163 55.000 0.00 0.00 33.36 4.44
3720 4188 7.180408 GGAATTAGAGGTTCCATAGGCTATGTA 59.820 40.741 27.86 14.11 43.67 2.29
3749 4226 8.410141 TCCAGGTGACTAAAACTTGTAATTTTG 58.590 33.333 0.00 0.00 40.21 2.44
4099 4586 1.828331 GCAACAACCTCGTGACCGAC 61.828 60.000 0.00 0.00 38.40 4.79
4165 4652 6.499699 AGATGCATATCTCAAGTTCATAGGGA 59.500 38.462 0.00 0.00 39.46 4.20
4259 4746 7.559590 AGACATGATCCTGCATACTAAAAAC 57.440 36.000 0.00 0.00 0.00 2.43
4447 4936 1.004628 ACACATGGAGGCAGCATTACA 59.995 47.619 0.00 0.00 0.00 2.41
4448 4937 2.304092 CACATGGAGGCAGCATTACAT 58.696 47.619 0.00 0.00 0.00 2.29
4449 4938 2.691526 CACATGGAGGCAGCATTACATT 59.308 45.455 0.00 0.00 0.00 2.71
4450 4939 3.884693 CACATGGAGGCAGCATTACATTA 59.115 43.478 0.00 0.00 0.00 1.90
4457 4946 4.940463 AGGCAGCATTACATTATTGCTTG 58.060 39.130 0.00 0.00 41.80 4.01
4496 4996 6.205464 CCTGAAGTTGCAGAGAGTTTCATTTA 59.795 38.462 0.00 0.00 38.14 1.40
4497 4997 7.094463 CCTGAAGTTGCAGAGAGTTTCATTTAT 60.094 37.037 0.00 0.00 38.14 1.40
4498 4998 8.169977 TGAAGTTGCAGAGAGTTTCATTTATT 57.830 30.769 0.00 0.00 0.00 1.40
4760 5316 4.835615 TGGGGTACAAACTAATGCACATTT 59.164 37.500 0.47 0.00 32.50 2.32
4802 5358 7.786030 TGTCTAAAGTCTGATTCTCAATAGGG 58.214 38.462 0.00 0.00 0.00 3.53
4803 5359 7.147655 TGTCTAAAGTCTGATTCTCAATAGGGG 60.148 40.741 0.00 0.00 0.00 4.79
4804 5360 7.070074 GTCTAAAGTCTGATTCTCAATAGGGGA 59.930 40.741 0.00 0.00 0.00 4.81
4805 5361 6.642733 AAAGTCTGATTCTCAATAGGGGAA 57.357 37.500 0.00 0.00 0.00 3.97
4806 5362 6.642733 AAGTCTGATTCTCAATAGGGGAAA 57.357 37.500 0.00 0.00 0.00 3.13
4807 5363 6.642733 AGTCTGATTCTCAATAGGGGAAAA 57.357 37.500 0.00 0.00 0.00 2.29
4808 5364 7.032598 AGTCTGATTCTCAATAGGGGAAAAA 57.967 36.000 0.00 0.00 0.00 1.94
4809 5365 7.115414 AGTCTGATTCTCAATAGGGGAAAAAG 58.885 38.462 0.00 0.00 0.00 2.27
4810 5366 5.888161 TCTGATTCTCAATAGGGGAAAAAGC 59.112 40.000 0.00 0.00 0.00 3.51
4811 5367 5.831103 TGATTCTCAATAGGGGAAAAAGCT 58.169 37.500 0.00 0.00 0.00 3.74
4812 5368 6.969043 TGATTCTCAATAGGGGAAAAAGCTA 58.031 36.000 0.00 0.00 0.00 3.32
4813 5369 7.586349 TGATTCTCAATAGGGGAAAAAGCTAT 58.414 34.615 0.00 0.00 0.00 2.97
4814 5370 7.721399 TGATTCTCAATAGGGGAAAAAGCTATC 59.279 37.037 0.00 0.00 0.00 2.08
4815 5371 6.831664 TCTCAATAGGGGAAAAAGCTATCT 57.168 37.500 0.00 0.00 0.00 1.98
4816 5372 6.595682 TCTCAATAGGGGAAAAAGCTATCTG 58.404 40.000 0.00 0.00 0.00 2.90
4817 5373 6.158695 TCTCAATAGGGGAAAAAGCTATCTGT 59.841 38.462 0.00 0.00 0.00 3.41
4818 5374 6.357367 TCAATAGGGGAAAAAGCTATCTGTC 58.643 40.000 0.00 0.00 0.00 3.51
4819 5375 5.975988 ATAGGGGAAAAAGCTATCTGTCA 57.024 39.130 0.00 0.00 0.00 3.58
4820 5376 4.657814 AGGGGAAAAAGCTATCTGTCAA 57.342 40.909 0.00 0.00 0.00 3.18
4821 5377 5.198602 AGGGGAAAAAGCTATCTGTCAAT 57.801 39.130 0.00 0.00 0.00 2.57
4822 5378 6.327386 AGGGGAAAAAGCTATCTGTCAATA 57.673 37.500 0.00 0.00 0.00 1.90
4823 5379 6.731467 AGGGGAAAAAGCTATCTGTCAATAA 58.269 36.000 0.00 0.00 0.00 1.40
4824 5380 7.182060 AGGGGAAAAAGCTATCTGTCAATAAA 58.818 34.615 0.00 0.00 0.00 1.40
4825 5381 7.673926 AGGGGAAAAAGCTATCTGTCAATAAAA 59.326 33.333 0.00 0.00 0.00 1.52
4826 5382 8.478066 GGGGAAAAAGCTATCTGTCAATAAAAT 58.522 33.333 0.00 0.00 0.00 1.82
4983 5539 8.963130 CAGAAACAGATACTAGAATTTAGAGCG 58.037 37.037 0.00 0.00 0.00 5.03
5001 5558 3.140506 CAAGCAGCCTGCCCAAAA 58.859 55.556 14.25 0.00 46.52 2.44
5070 5628 2.926200 CACGGACTAGAAAGCATCAGTG 59.074 50.000 0.00 0.00 32.38 3.66
5150 5718 7.175641 CCATCCACCTTCTATTAATTGCCTTAG 59.824 40.741 0.00 0.00 0.00 2.18
5182 5752 8.478775 AGAAATGCAGGTACTAGATATGTACA 57.521 34.615 0.00 0.00 41.27 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.719370 ACATAACCATTACTTCTCCTGCAAAA 59.281 34.615 0.00 0.00 0.00 2.44
2 3 6.245408 ACATAACCATTACTTCTCCTGCAAA 58.755 36.000 0.00 0.00 0.00 3.68
3 4 5.815581 ACATAACCATTACTTCTCCTGCAA 58.184 37.500 0.00 0.00 0.00 4.08
4 5 5.045942 TGACATAACCATTACTTCTCCTGCA 60.046 40.000 0.00 0.00 0.00 4.41
5 6 5.428253 TGACATAACCATTACTTCTCCTGC 58.572 41.667 0.00 0.00 0.00 4.85
6 7 6.878923 TGTTGACATAACCATTACTTCTCCTG 59.121 38.462 0.00 0.00 0.00 3.86
7 8 7.016153 TGTTGACATAACCATTACTTCTCCT 57.984 36.000 0.00 0.00 0.00 3.69
8 9 7.865706 ATGTTGACATAACCATTACTTCTCC 57.134 36.000 0.00 0.00 34.26 3.71
9 10 9.774742 GAAATGTTGACATAACCATTACTTCTC 57.225 33.333 0.00 0.00 35.10 2.87
10 11 9.295825 TGAAATGTTGACATAACCATTACTTCT 57.704 29.630 0.00 0.00 35.10 2.85
11 12 9.906660 TTGAAATGTTGACATAACCATTACTTC 57.093 29.630 0.00 0.00 35.10 3.01
17 18 9.426837 CATCTTTTGAAATGTTGACATAACCAT 57.573 29.630 0.00 0.00 35.10 3.55
18 19 8.637099 TCATCTTTTGAAATGTTGACATAACCA 58.363 29.630 0.00 0.00 35.10 3.67
19 20 9.643693 ATCATCTTTTGAAATGTTGACATAACC 57.356 29.630 6.69 0.00 38.03 2.85
23 24 9.767228 TTGAATCATCTTTTGAAATGTTGACAT 57.233 25.926 6.69 0.00 38.03 3.06
24 25 9.597170 TTTGAATCATCTTTTGAAATGTTGACA 57.403 25.926 6.69 1.09 38.03 3.58
34 35 9.643693 GCTTTTAGGATTTGAATCATCTTTTGA 57.356 29.630 6.11 0.00 37.15 2.69
35 36 9.426837 TGCTTTTAGGATTTGAATCATCTTTTG 57.573 29.630 6.11 0.00 37.15 2.44
38 39 9.649167 CTTTGCTTTTAGGATTTGAATCATCTT 57.351 29.630 6.11 0.00 37.15 2.40
39 40 7.763071 GCTTTGCTTTTAGGATTTGAATCATCT 59.237 33.333 6.11 0.00 37.15 2.90
40 41 7.763071 AGCTTTGCTTTTAGGATTTGAATCATC 59.237 33.333 6.11 0.00 33.89 2.92
41 42 7.618137 AGCTTTGCTTTTAGGATTTGAATCAT 58.382 30.769 6.11 1.46 33.89 2.45
42 43 6.996509 AGCTTTGCTTTTAGGATTTGAATCA 58.003 32.000 6.11 0.00 33.89 2.57
43 44 8.246871 AGTAGCTTTGCTTTTAGGATTTGAATC 58.753 33.333 0.00 0.00 40.44 2.52
44 45 8.127150 AGTAGCTTTGCTTTTAGGATTTGAAT 57.873 30.769 0.00 0.00 40.44 2.57
45 46 7.524717 AGTAGCTTTGCTTTTAGGATTTGAA 57.475 32.000 0.00 0.00 40.44 2.69
46 47 7.448469 AGAAGTAGCTTTGCTTTTAGGATTTGA 59.552 33.333 0.00 0.00 40.44 2.69
47 48 7.540055 CAGAAGTAGCTTTGCTTTTAGGATTTG 59.460 37.037 0.00 0.00 40.44 2.32
48 49 7.231519 ACAGAAGTAGCTTTGCTTTTAGGATTT 59.768 33.333 0.00 0.00 40.44 2.17
49 50 6.717084 ACAGAAGTAGCTTTGCTTTTAGGATT 59.283 34.615 0.00 0.00 40.44 3.01
50 51 6.150140 CACAGAAGTAGCTTTGCTTTTAGGAT 59.850 38.462 0.00 0.00 40.44 3.24
51 52 5.470098 CACAGAAGTAGCTTTGCTTTTAGGA 59.530 40.000 0.00 0.00 40.44 2.94
52 53 5.335191 CCACAGAAGTAGCTTTGCTTTTAGG 60.335 44.000 0.00 0.00 40.44 2.69
53 54 5.239525 ACCACAGAAGTAGCTTTGCTTTTAG 59.760 40.000 0.00 0.00 40.44 1.85
54 55 5.130350 ACCACAGAAGTAGCTTTGCTTTTA 58.870 37.500 0.00 0.00 40.44 1.52
55 56 3.954258 ACCACAGAAGTAGCTTTGCTTTT 59.046 39.130 0.00 0.00 40.44 2.27
56 57 3.555966 ACCACAGAAGTAGCTTTGCTTT 58.444 40.909 0.00 0.00 40.44 3.51
57 58 3.214696 ACCACAGAAGTAGCTTTGCTT 57.785 42.857 0.00 0.00 40.44 3.91
58 59 2.938956 ACCACAGAAGTAGCTTTGCT 57.061 45.000 0.00 0.00 43.41 3.91
59 60 5.412904 AGAAATACCACAGAAGTAGCTTTGC 59.587 40.000 0.00 0.00 0.00 3.68
60 61 7.301054 CAAGAAATACCACAGAAGTAGCTTTG 58.699 38.462 0.00 0.00 0.00 2.77
61 62 6.072452 GCAAGAAATACCACAGAAGTAGCTTT 60.072 38.462 0.00 0.00 0.00 3.51
62 63 5.412904 GCAAGAAATACCACAGAAGTAGCTT 59.587 40.000 0.00 0.00 0.00 3.74
63 64 4.938226 GCAAGAAATACCACAGAAGTAGCT 59.062 41.667 0.00 0.00 0.00 3.32
64 65 4.938226 AGCAAGAAATACCACAGAAGTAGC 59.062 41.667 0.00 0.00 0.00 3.58
65 66 7.440523 AAAGCAAGAAATACCACAGAAGTAG 57.559 36.000 0.00 0.00 0.00 2.57
66 67 7.119262 GCTAAAGCAAGAAATACCACAGAAGTA 59.881 37.037 0.00 0.00 41.59 2.24
67 68 6.072452 GCTAAAGCAAGAAATACCACAGAAGT 60.072 38.462 0.00 0.00 41.59 3.01
68 69 6.150140 AGCTAAAGCAAGAAATACCACAGAAG 59.850 38.462 4.54 0.00 45.16 2.85
69 70 6.003950 AGCTAAAGCAAGAAATACCACAGAA 58.996 36.000 4.54 0.00 45.16 3.02
70 71 5.560724 AGCTAAAGCAAGAAATACCACAGA 58.439 37.500 4.54 0.00 45.16 3.41
71 72 5.886960 AGCTAAAGCAAGAAATACCACAG 57.113 39.130 4.54 0.00 45.16 3.66
72 73 6.371548 CAGTAGCTAAAGCAAGAAATACCACA 59.628 38.462 4.54 0.00 45.16 4.17
73 74 6.183360 CCAGTAGCTAAAGCAAGAAATACCAC 60.183 42.308 4.54 0.00 45.16 4.16
74 75 5.880332 CCAGTAGCTAAAGCAAGAAATACCA 59.120 40.000 4.54 0.00 45.16 3.25
75 76 5.880887 ACCAGTAGCTAAAGCAAGAAATACC 59.119 40.000 4.54 0.00 45.16 2.73
76 77 6.183360 CCACCAGTAGCTAAAGCAAGAAATAC 60.183 42.308 4.54 0.00 45.16 1.89
77 78 5.880332 CCACCAGTAGCTAAAGCAAGAAATA 59.120 40.000 4.54 0.00 45.16 1.40
78 79 4.702131 CCACCAGTAGCTAAAGCAAGAAAT 59.298 41.667 4.54 0.00 45.16 2.17
79 80 4.072131 CCACCAGTAGCTAAAGCAAGAAA 58.928 43.478 4.54 0.00 45.16 2.52
80 81 3.559171 CCCACCAGTAGCTAAAGCAAGAA 60.559 47.826 4.54 0.00 45.16 2.52
81 82 2.027192 CCCACCAGTAGCTAAAGCAAGA 60.027 50.000 4.54 0.00 45.16 3.02
82 83 2.359900 CCCACCAGTAGCTAAAGCAAG 58.640 52.381 4.54 0.00 45.16 4.01
83 84 1.004277 CCCCACCAGTAGCTAAAGCAA 59.996 52.381 4.54 0.00 45.16 3.91
84 85 0.618458 CCCCACCAGTAGCTAAAGCA 59.382 55.000 4.54 0.00 45.16 3.91
85 86 0.909623 TCCCCACCAGTAGCTAAAGC 59.090 55.000 0.00 0.00 42.49 3.51
86 87 1.486726 CCTCCCCACCAGTAGCTAAAG 59.513 57.143 0.00 0.00 0.00 1.85
87 88 1.079825 TCCTCCCCACCAGTAGCTAAA 59.920 52.381 0.00 0.00 0.00 1.85
88 89 0.714180 TCCTCCCCACCAGTAGCTAA 59.286 55.000 0.00 0.00 0.00 3.09
89 90 0.941963 ATCCTCCCCACCAGTAGCTA 59.058 55.000 0.00 0.00 0.00 3.32
90 91 0.692419 CATCCTCCCCACCAGTAGCT 60.692 60.000 0.00 0.00 0.00 3.32
91 92 0.691078 TCATCCTCCCCACCAGTAGC 60.691 60.000 0.00 0.00 0.00 3.58
92 93 2.109229 ATCATCCTCCCCACCAGTAG 57.891 55.000 0.00 0.00 0.00 2.57
93 94 2.522705 AGTATCATCCTCCCCACCAGTA 59.477 50.000 0.00 0.00 0.00 2.74
94 95 1.295292 AGTATCATCCTCCCCACCAGT 59.705 52.381 0.00 0.00 0.00 4.00
95 96 2.109229 AGTATCATCCTCCCCACCAG 57.891 55.000 0.00 0.00 0.00 4.00
96 97 3.717507 TTAGTATCATCCTCCCCACCA 57.282 47.619 0.00 0.00 0.00 4.17
97 98 4.412528 AGTTTTAGTATCATCCTCCCCACC 59.587 45.833 0.00 0.00 0.00 4.61
98 99 5.368989 CAGTTTTAGTATCATCCTCCCCAC 58.631 45.833 0.00 0.00 0.00 4.61
99 100 4.412199 CCAGTTTTAGTATCATCCTCCCCA 59.588 45.833 0.00 0.00 0.00 4.96
100 101 4.412528 ACCAGTTTTAGTATCATCCTCCCC 59.587 45.833 0.00 0.00 0.00 4.81
101 102 5.368989 CACCAGTTTTAGTATCATCCTCCC 58.631 45.833 0.00 0.00 0.00 4.30
102 103 4.816925 GCACCAGTTTTAGTATCATCCTCC 59.183 45.833 0.00 0.00 0.00 4.30
103 104 5.675538 AGCACCAGTTTTAGTATCATCCTC 58.324 41.667 0.00 0.00 0.00 3.71
104 105 5.396884 GGAGCACCAGTTTTAGTATCATCCT 60.397 44.000 0.00 0.00 35.97 3.24
105 106 4.816925 GGAGCACCAGTTTTAGTATCATCC 59.183 45.833 0.00 0.00 35.97 3.51
106 107 5.428253 TGGAGCACCAGTTTTAGTATCATC 58.572 41.667 0.00 0.00 41.77 2.92
107 108 5.435686 TGGAGCACCAGTTTTAGTATCAT 57.564 39.130 0.00 0.00 41.77 2.45
108 109 4.901197 TGGAGCACCAGTTTTAGTATCA 57.099 40.909 0.00 0.00 41.77 2.15
120 121 1.667236 CATATTTCGCTGGAGCACCA 58.333 50.000 1.91 1.91 44.76 4.17
121 122 0.947244 CCATATTTCGCTGGAGCACC 59.053 55.000 0.00 0.00 42.21 5.01
122 123 0.308993 GCCATATTTCGCTGGAGCAC 59.691 55.000 0.00 0.00 42.21 4.40
123 124 0.107263 TGCCATATTTCGCTGGAGCA 60.107 50.000 0.00 0.00 42.21 4.26
124 125 1.068748 CATGCCATATTTCGCTGGAGC 60.069 52.381 0.00 0.00 34.24 4.70
125 126 2.224606 ACATGCCATATTTCGCTGGAG 58.775 47.619 0.00 0.00 34.24 3.86
126 127 2.346766 ACATGCCATATTTCGCTGGA 57.653 45.000 0.00 0.00 34.24 3.86
127 128 2.099592 ACAACATGCCATATTTCGCTGG 59.900 45.455 0.00 0.00 35.53 4.85
128 129 3.065786 AGACAACATGCCATATTTCGCTG 59.934 43.478 0.00 0.00 0.00 5.18
129 130 3.282021 AGACAACATGCCATATTTCGCT 58.718 40.909 0.00 0.00 0.00 4.93
130 131 3.698029 AGACAACATGCCATATTTCGC 57.302 42.857 0.00 0.00 0.00 4.70
131 132 4.096231 TGGAAGACAACATGCCATATTTCG 59.904 41.667 0.00 0.00 0.00 3.46
132 133 5.126061 AGTGGAAGACAACATGCCATATTTC 59.874 40.000 0.00 0.00 0.00 2.17
133 134 5.018809 AGTGGAAGACAACATGCCATATTT 58.981 37.500 0.00 0.00 0.00 1.40
134 135 4.603131 AGTGGAAGACAACATGCCATATT 58.397 39.130 0.00 0.00 0.00 1.28
135 136 4.240881 AGTGGAAGACAACATGCCATAT 57.759 40.909 0.00 0.00 0.00 1.78
136 137 3.719268 AGTGGAAGACAACATGCCATA 57.281 42.857 0.00 0.00 0.00 2.74
137 138 2.592102 AGTGGAAGACAACATGCCAT 57.408 45.000 0.00 0.00 0.00 4.40
138 139 2.363306 AAGTGGAAGACAACATGCCA 57.637 45.000 0.00 0.00 0.00 4.92
139 140 4.846779 TTTAAGTGGAAGACAACATGCC 57.153 40.909 0.00 0.00 0.00 4.40
140 141 7.538575 ACATATTTAAGTGGAAGACAACATGC 58.461 34.615 0.00 0.00 0.00 4.06
141 142 9.912634 AAACATATTTAAGTGGAAGACAACATG 57.087 29.630 0.00 0.00 0.00 3.21
162 163 8.860088 AGGCTTCAGAAATTAACTTGTAAACAT 58.140 29.630 0.00 0.00 0.00 2.71
163 164 8.134895 CAGGCTTCAGAAATTAACTTGTAAACA 58.865 33.333 0.00 0.00 0.00 2.83
164 165 7.114953 GCAGGCTTCAGAAATTAACTTGTAAAC 59.885 37.037 0.00 0.00 0.00 2.01
165 166 7.145323 GCAGGCTTCAGAAATTAACTTGTAAA 58.855 34.615 0.00 0.00 0.00 2.01
166 167 6.264292 TGCAGGCTTCAGAAATTAACTTGTAA 59.736 34.615 0.00 0.00 0.00 2.41
167 168 5.767665 TGCAGGCTTCAGAAATTAACTTGTA 59.232 36.000 0.00 0.00 0.00 2.41
168 169 4.584325 TGCAGGCTTCAGAAATTAACTTGT 59.416 37.500 0.00 0.00 0.00 3.16
169 170 5.125100 TGCAGGCTTCAGAAATTAACTTG 57.875 39.130 0.00 0.00 0.00 3.16
170 171 4.829492 ACTGCAGGCTTCAGAAATTAACTT 59.171 37.500 21.00 0.00 35.61 2.66
171 172 4.217118 CACTGCAGGCTTCAGAAATTAACT 59.783 41.667 21.00 0.00 35.61 2.24
172 173 4.022849 ACACTGCAGGCTTCAGAAATTAAC 60.023 41.667 21.00 0.00 35.61 2.01
173 174 4.144297 ACACTGCAGGCTTCAGAAATTAA 58.856 39.130 21.00 0.00 35.61 1.40
174 175 3.754965 ACACTGCAGGCTTCAGAAATTA 58.245 40.909 21.00 0.00 35.61 1.40
175 176 2.590821 ACACTGCAGGCTTCAGAAATT 58.409 42.857 21.00 0.00 35.61 1.82
176 177 2.283145 ACACTGCAGGCTTCAGAAAT 57.717 45.000 21.00 2.71 35.61 2.17
177 178 2.057137 AACACTGCAGGCTTCAGAAA 57.943 45.000 21.00 0.00 35.61 2.52
178 179 1.677576 CAAACACTGCAGGCTTCAGAA 59.322 47.619 21.00 0.00 35.61 3.02
179 180 1.311859 CAAACACTGCAGGCTTCAGA 58.688 50.000 21.00 0.00 35.61 3.27
180 181 0.313043 CCAAACACTGCAGGCTTCAG 59.687 55.000 19.93 12.75 37.56 3.02
181 182 1.737355 GCCAAACACTGCAGGCTTCA 61.737 55.000 19.93 0.00 43.70 3.02
182 183 1.006922 GCCAAACACTGCAGGCTTC 60.007 57.895 19.93 0.00 43.70 3.86
183 184 3.132084 GCCAAACACTGCAGGCTT 58.868 55.556 19.93 5.44 43.70 4.35
186 187 0.313043 CAGAAGCCAAACACTGCAGG 59.687 55.000 19.93 9.66 0.00 4.85
187 188 1.266175 CTCAGAAGCCAAACACTGCAG 59.734 52.381 13.48 13.48 0.00 4.41
188 189 1.311859 CTCAGAAGCCAAACACTGCA 58.688 50.000 0.00 0.00 0.00 4.41
189 190 1.312815 ACTCAGAAGCCAAACACTGC 58.687 50.000 0.00 0.00 0.00 4.40
190 191 3.733337 AGTACTCAGAAGCCAAACACTG 58.267 45.455 0.00 0.00 0.00 3.66
191 192 4.423625 AAGTACTCAGAAGCCAAACACT 57.576 40.909 0.00 0.00 0.00 3.55
192 193 4.261197 CCAAAGTACTCAGAAGCCAAACAC 60.261 45.833 0.00 0.00 0.00 3.32
193 194 3.882888 CCAAAGTACTCAGAAGCCAAACA 59.117 43.478 0.00 0.00 0.00 2.83
194 195 3.883489 ACCAAAGTACTCAGAAGCCAAAC 59.117 43.478 0.00 0.00 0.00 2.93
195 196 4.164843 ACCAAAGTACTCAGAAGCCAAA 57.835 40.909 0.00 0.00 0.00 3.28
196 197 3.857157 ACCAAAGTACTCAGAAGCCAA 57.143 42.857 0.00 0.00 0.00 4.52
197 198 3.135712 TGAACCAAAGTACTCAGAAGCCA 59.864 43.478 0.00 0.00 0.00 4.75
198 199 3.498777 GTGAACCAAAGTACTCAGAAGCC 59.501 47.826 0.00 0.00 0.00 4.35
199 200 3.498777 GGTGAACCAAAGTACTCAGAAGC 59.501 47.826 0.00 0.00 35.64 3.86
200 201 4.752101 CAGGTGAACCAAAGTACTCAGAAG 59.248 45.833 0.00 0.00 38.89 2.85
201 202 4.407621 TCAGGTGAACCAAAGTACTCAGAA 59.592 41.667 0.00 0.00 38.89 3.02
202 203 3.964688 TCAGGTGAACCAAAGTACTCAGA 59.035 43.478 0.00 0.00 38.89 3.27
203 204 4.039245 TCTCAGGTGAACCAAAGTACTCAG 59.961 45.833 0.00 0.00 38.89 3.35
204 205 3.964688 TCTCAGGTGAACCAAAGTACTCA 59.035 43.478 0.00 0.00 38.89 3.41
205 206 4.602340 TCTCAGGTGAACCAAAGTACTC 57.398 45.455 0.00 0.00 38.89 2.59
206 207 5.308825 CATTCTCAGGTGAACCAAAGTACT 58.691 41.667 1.62 0.00 38.89 2.73
207 208 4.455877 CCATTCTCAGGTGAACCAAAGTAC 59.544 45.833 1.62 0.00 38.89 2.73
208 209 4.104102 ACCATTCTCAGGTGAACCAAAGTA 59.896 41.667 1.62 0.00 38.13 2.24
209 210 3.117512 ACCATTCTCAGGTGAACCAAAGT 60.118 43.478 1.62 0.00 38.13 2.66
210 211 3.490348 ACCATTCTCAGGTGAACCAAAG 58.510 45.455 1.62 0.00 38.13 2.77
211 212 3.593442 ACCATTCTCAGGTGAACCAAA 57.407 42.857 1.62 0.00 38.13 3.28
212 213 3.117701 TGAACCATTCTCAGGTGAACCAA 60.118 43.478 1.62 0.00 39.86 3.67
213 214 2.441375 TGAACCATTCTCAGGTGAACCA 59.559 45.455 1.62 0.00 39.86 3.67
214 215 3.140325 TGAACCATTCTCAGGTGAACC 57.860 47.619 0.00 0.00 39.86 3.62
215 216 4.761739 TCAATGAACCATTCTCAGGTGAAC 59.238 41.667 0.00 0.00 39.86 3.18
216 217 4.984295 TCAATGAACCATTCTCAGGTGAA 58.016 39.130 0.00 0.00 39.86 3.18
217 218 4.639078 TCAATGAACCATTCTCAGGTGA 57.361 40.909 0.00 0.00 39.86 4.02
218 219 4.945543 TGATCAATGAACCATTCTCAGGTG 59.054 41.667 0.00 0.00 39.86 4.00
219 220 5.183530 TGATCAATGAACCATTCTCAGGT 57.816 39.130 0.00 0.00 42.34 4.00
220 221 6.206243 GGTATGATCAATGAACCATTCTCAGG 59.794 42.308 0.00 0.00 31.05 3.86
221 222 6.996879 AGGTATGATCAATGAACCATTCTCAG 59.003 38.462 17.23 0.00 31.05 3.35
222 223 6.903516 AGGTATGATCAATGAACCATTCTCA 58.096 36.000 17.23 0.00 31.05 3.27
223 224 7.814264 AAGGTATGATCAATGAACCATTCTC 57.186 36.000 17.23 0.00 31.05 2.87
224 225 7.721399 GGTAAGGTATGATCAATGAACCATTCT 59.279 37.037 17.23 3.05 31.05 2.40
225 226 7.502226 TGGTAAGGTATGATCAATGAACCATTC 59.498 37.037 17.23 7.49 31.05 2.67
226 227 7.285401 GTGGTAAGGTATGATCAATGAACCATT 59.715 37.037 16.25 11.86 35.86 3.16
227 228 6.772716 GTGGTAAGGTATGATCAATGAACCAT 59.227 38.462 16.25 10.32 35.86 3.55
228 229 6.119536 GTGGTAAGGTATGATCAATGAACCA 58.880 40.000 17.23 14.52 32.43 3.67
229 230 6.119536 TGTGGTAAGGTATGATCAATGAACC 58.880 40.000 0.00 5.66 0.00 3.62
230 231 7.642669 CATGTGGTAAGGTATGATCAATGAAC 58.357 38.462 0.00 0.00 0.00 3.18
231 232 6.262944 GCATGTGGTAAGGTATGATCAATGAA 59.737 38.462 0.00 0.00 0.00 2.57
232 233 5.764686 GCATGTGGTAAGGTATGATCAATGA 59.235 40.000 0.00 0.00 0.00 2.57
233 234 5.532032 TGCATGTGGTAAGGTATGATCAATG 59.468 40.000 0.00 0.00 0.00 2.82
234 235 5.693961 TGCATGTGGTAAGGTATGATCAAT 58.306 37.500 0.00 0.00 0.00 2.57
235 236 5.109500 TGCATGTGGTAAGGTATGATCAA 57.891 39.130 0.00 0.00 0.00 2.57
236 237 4.164030 ACTGCATGTGGTAAGGTATGATCA 59.836 41.667 0.00 0.00 0.00 2.92
237 238 4.708177 ACTGCATGTGGTAAGGTATGATC 58.292 43.478 0.00 0.00 0.00 2.92
238 239 4.778213 ACTGCATGTGGTAAGGTATGAT 57.222 40.909 0.00 0.00 0.00 2.45
239 240 5.130311 ACATACTGCATGTGGTAAGGTATGA 59.870 40.000 18.36 0.00 46.41 2.15
240 241 5.368145 ACATACTGCATGTGGTAAGGTATG 58.632 41.667 12.70 12.70 46.41 2.39
241 242 5.630415 ACATACTGCATGTGGTAAGGTAT 57.370 39.130 0.00 0.00 46.41 2.73
252 253 5.733226 TTTATGTTCGGACATACTGCATG 57.267 39.130 16.32 0.00 45.81 4.06
253 254 6.751514 TTTTTATGTTCGGACATACTGCAT 57.248 33.333 16.32 0.00 45.81 3.96
254 255 6.372937 TCATTTTTATGTTCGGACATACTGCA 59.627 34.615 16.32 0.00 45.81 4.41
255 256 6.781138 TCATTTTTATGTTCGGACATACTGC 58.219 36.000 16.32 0.00 45.81 4.40
256 257 8.397906 ACATCATTTTTATGTTCGGACATACTG 58.602 33.333 16.32 11.19 45.81 2.74
257 258 8.506168 ACATCATTTTTATGTTCGGACATACT 57.494 30.769 16.32 0.00 45.81 2.12
258 259 8.612619 AGACATCATTTTTATGTTCGGACATAC 58.387 33.333 16.32 1.22 45.81 2.39
259 260 8.731275 AGACATCATTTTTATGTTCGGACATA 57.269 30.769 12.71 12.71 44.51 2.29
261 262 7.361713 GGAAGACATCATTTTTATGTTCGGACA 60.362 37.037 0.00 0.00 37.69 4.02
262 263 6.967199 GGAAGACATCATTTTTATGTTCGGAC 59.033 38.462 0.00 0.00 37.69 4.79
263 264 6.884295 AGGAAGACATCATTTTTATGTTCGGA 59.116 34.615 0.00 0.00 37.69 4.55
264 265 6.968904 CAGGAAGACATCATTTTTATGTTCGG 59.031 38.462 0.00 0.00 37.69 4.30
265 266 6.470235 GCAGGAAGACATCATTTTTATGTTCG 59.530 38.462 0.00 0.00 37.69 3.95
266 267 7.542025 AGCAGGAAGACATCATTTTTATGTTC 58.458 34.615 0.00 0.00 37.69 3.18
267 268 7.472334 AGCAGGAAGACATCATTTTTATGTT 57.528 32.000 0.00 0.00 37.69 2.71
268 269 7.363268 GGAAGCAGGAAGACATCATTTTTATGT 60.363 37.037 0.00 0.00 40.23 2.29
269 270 6.976925 GGAAGCAGGAAGACATCATTTTTATG 59.023 38.462 0.00 0.00 0.00 1.90
270 271 6.664816 TGGAAGCAGGAAGACATCATTTTTAT 59.335 34.615 0.00 0.00 0.00 1.40
271 272 6.009589 TGGAAGCAGGAAGACATCATTTTTA 58.990 36.000 0.00 0.00 0.00 1.52
272 273 4.834496 TGGAAGCAGGAAGACATCATTTTT 59.166 37.500 0.00 0.00 0.00 1.94
273 274 4.219288 GTGGAAGCAGGAAGACATCATTTT 59.781 41.667 0.00 0.00 0.00 1.82
274 275 3.760684 GTGGAAGCAGGAAGACATCATTT 59.239 43.478 0.00 0.00 0.00 2.32
275 276 3.245016 TGTGGAAGCAGGAAGACATCATT 60.245 43.478 0.00 0.00 0.00 2.57
276 277 2.306805 TGTGGAAGCAGGAAGACATCAT 59.693 45.455 0.00 0.00 0.00 2.45
277 278 1.699083 TGTGGAAGCAGGAAGACATCA 59.301 47.619 0.00 0.00 0.00 3.07
278 279 2.479566 TGTGGAAGCAGGAAGACATC 57.520 50.000 0.00 0.00 0.00 3.06
279 280 3.446442 AATGTGGAAGCAGGAAGACAT 57.554 42.857 0.00 0.00 0.00 3.06
280 281 2.957402 AATGTGGAAGCAGGAAGACA 57.043 45.000 0.00 0.00 0.00 3.41
281 282 3.416156 AGAAATGTGGAAGCAGGAAGAC 58.584 45.455 0.00 0.00 0.00 3.01
282 283 3.795688 AGAAATGTGGAAGCAGGAAGA 57.204 42.857 0.00 0.00 0.00 2.87
283 284 4.154918 GTGTAGAAATGTGGAAGCAGGAAG 59.845 45.833 0.00 0.00 0.00 3.46
284 285 4.072131 GTGTAGAAATGTGGAAGCAGGAA 58.928 43.478 0.00 0.00 0.00 3.36
285 286 3.072330 TGTGTAGAAATGTGGAAGCAGGA 59.928 43.478 0.00 0.00 0.00 3.86
286 287 3.411446 TGTGTAGAAATGTGGAAGCAGG 58.589 45.455 0.00 0.00 0.00 4.85
287 288 4.067896 ACTGTGTAGAAATGTGGAAGCAG 58.932 43.478 0.00 0.00 0.00 4.24
288 289 4.085357 ACTGTGTAGAAATGTGGAAGCA 57.915 40.909 0.00 0.00 0.00 3.91
289 290 4.994852 TGTACTGTGTAGAAATGTGGAAGC 59.005 41.667 0.00 0.00 0.00 3.86
290 291 6.147821 CCTTGTACTGTGTAGAAATGTGGAAG 59.852 42.308 0.00 0.00 0.00 3.46
291 292 5.995282 CCTTGTACTGTGTAGAAATGTGGAA 59.005 40.000 0.00 0.00 0.00 3.53
292 293 5.071250 ACCTTGTACTGTGTAGAAATGTGGA 59.929 40.000 0.00 0.00 0.00 4.02
293 294 5.305585 ACCTTGTACTGTGTAGAAATGTGG 58.694 41.667 0.00 0.00 0.00 4.17
294 295 6.861065 AACCTTGTACTGTGTAGAAATGTG 57.139 37.500 0.00 0.00 0.00 3.21
295 296 7.875327 AAAACCTTGTACTGTGTAGAAATGT 57.125 32.000 0.00 0.00 0.00 2.71
297 298 9.787435 TGATAAAACCTTGTACTGTGTAGAAAT 57.213 29.630 0.00 0.00 0.00 2.17
298 299 9.268268 CTGATAAAACCTTGTACTGTGTAGAAA 57.732 33.333 0.00 0.00 0.00 2.52
299 300 7.386848 GCTGATAAAACCTTGTACTGTGTAGAA 59.613 37.037 0.00 0.00 0.00 2.10
300 301 6.872020 GCTGATAAAACCTTGTACTGTGTAGA 59.128 38.462 0.00 0.00 0.00 2.59
301 302 6.649141 TGCTGATAAAACCTTGTACTGTGTAG 59.351 38.462 0.00 0.00 0.00 2.74
302 303 6.526526 TGCTGATAAAACCTTGTACTGTGTA 58.473 36.000 0.00 0.00 0.00 2.90
303 304 5.373222 TGCTGATAAAACCTTGTACTGTGT 58.627 37.500 0.00 0.00 0.00 3.72
304 305 5.940192 TGCTGATAAAACCTTGTACTGTG 57.060 39.130 0.00 0.00 0.00 3.66
305 306 6.237901 TCATGCTGATAAAACCTTGTACTGT 58.762 36.000 0.00 0.00 0.00 3.55
306 307 6.676456 GCTCATGCTGATAAAACCTTGTACTG 60.676 42.308 0.00 0.00 36.03 2.74
307 308 5.355350 GCTCATGCTGATAAAACCTTGTACT 59.645 40.000 0.00 0.00 36.03 2.73
308 309 5.573146 GCTCATGCTGATAAAACCTTGTAC 58.427 41.667 0.00 0.00 36.03 2.90
309 310 5.818136 GCTCATGCTGATAAAACCTTGTA 57.182 39.130 0.00 0.00 36.03 2.41
310 311 4.708726 GCTCATGCTGATAAAACCTTGT 57.291 40.909 0.00 0.00 36.03 3.16
321 322 7.579531 ACAGTAAGTGTTATTAGCTCATGCTGA 60.580 37.037 0.00 0.00 43.25 4.26
322 323 6.536582 ACAGTAAGTGTTATTAGCTCATGCTG 59.463 38.462 0.00 0.00 43.25 4.41
323 324 6.644347 ACAGTAAGTGTTATTAGCTCATGCT 58.356 36.000 0.00 0.00 44.83 3.79
324 325 6.910536 ACAGTAAGTGTTATTAGCTCATGC 57.089 37.500 0.00 0.00 34.94 4.06
336 337 9.850198 TTGGGTTTACTATTTACAGTAAGTGTT 57.150 29.630 0.00 0.00 40.96 3.32
350 351 9.693739 TGTGTTCATATGAATTGGGTTTACTAT 57.306 29.630 20.65 0.00 36.33 2.12
351 352 8.952278 GTGTGTTCATATGAATTGGGTTTACTA 58.048 33.333 20.65 0.00 36.33 1.82
352 353 7.450014 TGTGTGTTCATATGAATTGGGTTTACT 59.550 33.333 20.65 0.00 36.33 2.24
353 354 7.598278 TGTGTGTTCATATGAATTGGGTTTAC 58.402 34.615 20.65 6.45 36.33 2.01
354 355 7.450014 ACTGTGTGTTCATATGAATTGGGTTTA 59.550 33.333 20.65 3.63 36.33 2.01
355 356 6.267471 ACTGTGTGTTCATATGAATTGGGTTT 59.733 34.615 20.65 2.39 36.33 3.27
356 357 5.774690 ACTGTGTGTTCATATGAATTGGGTT 59.225 36.000 20.65 1.66 36.33 4.11
357 358 5.324409 ACTGTGTGTTCATATGAATTGGGT 58.676 37.500 20.65 12.00 36.33 4.51
358 359 5.902613 ACTGTGTGTTCATATGAATTGGG 57.097 39.130 20.65 11.47 36.33 4.12
359 360 7.224557 TCGATACTGTGTGTTCATATGAATTGG 59.775 37.037 20.65 10.58 36.33 3.16
360 361 8.130307 TCGATACTGTGTGTTCATATGAATTG 57.870 34.615 20.65 6.19 36.33 2.32
361 362 8.197439 TCTCGATACTGTGTGTTCATATGAATT 58.803 33.333 20.65 3.50 36.33 2.17
362 363 7.716612 TCTCGATACTGTGTGTTCATATGAAT 58.283 34.615 20.65 6.11 36.33 2.57
363 364 7.095695 TCTCGATACTGTGTGTTCATATGAA 57.904 36.000 14.23 14.23 0.00 2.57
364 365 6.238759 CCTCTCGATACTGTGTGTTCATATGA 60.239 42.308 0.00 0.00 0.00 2.15
365 366 5.917447 CCTCTCGATACTGTGTGTTCATATG 59.083 44.000 0.00 0.00 0.00 1.78
366 367 5.508153 GCCTCTCGATACTGTGTGTTCATAT 60.508 44.000 0.00 0.00 0.00 1.78
367 368 4.202020 GCCTCTCGATACTGTGTGTTCATA 60.202 45.833 0.00 0.00 0.00 2.15
368 369 3.429547 GCCTCTCGATACTGTGTGTTCAT 60.430 47.826 0.00 0.00 0.00 2.57
369 370 2.094700 GCCTCTCGATACTGTGTGTTCA 60.095 50.000 0.00 0.00 0.00 3.18
370 371 2.531206 GCCTCTCGATACTGTGTGTTC 58.469 52.381 0.00 0.00 0.00 3.18
371 372 1.135373 CGCCTCTCGATACTGTGTGTT 60.135 52.381 0.00 0.00 41.67 3.32
372 373 0.452184 CGCCTCTCGATACTGTGTGT 59.548 55.000 0.00 0.00 41.67 3.72
373 374 0.867753 GCGCCTCTCGATACTGTGTG 60.868 60.000 0.00 0.00 41.67 3.82
374 375 1.433879 GCGCCTCTCGATACTGTGT 59.566 57.895 0.00 0.00 41.67 3.72
375 376 1.655654 CGCGCCTCTCGATACTGTG 60.656 63.158 0.00 0.00 41.67 3.66
376 377 2.716244 CGCGCCTCTCGATACTGT 59.284 61.111 0.00 0.00 41.67 3.55
377 378 2.050895 CCGCGCCTCTCGATACTG 60.051 66.667 0.00 0.00 41.67 2.74
378 379 3.967335 GCCGCGCCTCTCGATACT 61.967 66.667 0.00 0.00 41.67 2.12
404 405 1.093496 ATAACTAGCAAACCCCGCGC 61.093 55.000 0.00 0.00 0.00 6.86
405 406 1.063469 CAATAACTAGCAAACCCCGCG 59.937 52.381 0.00 0.00 0.00 6.46
406 407 2.089201 ACAATAACTAGCAAACCCCGC 58.911 47.619 0.00 0.00 0.00 6.13
407 408 5.064325 GTCTAACAATAACTAGCAAACCCCG 59.936 44.000 0.00 0.00 0.00 5.73
408 409 5.356190 GGTCTAACAATAACTAGCAAACCCC 59.644 44.000 0.00 0.00 0.00 4.95
409 410 5.941647 TGGTCTAACAATAACTAGCAAACCC 59.058 40.000 0.00 0.00 0.00 4.11
410 411 6.093633 CCTGGTCTAACAATAACTAGCAAACC 59.906 42.308 0.00 0.00 0.00 3.27
411 412 6.403309 GCCTGGTCTAACAATAACTAGCAAAC 60.403 42.308 0.00 0.00 0.00 2.93
412 413 5.646360 GCCTGGTCTAACAATAACTAGCAAA 59.354 40.000 0.00 0.00 0.00 3.68
413 414 5.183228 GCCTGGTCTAACAATAACTAGCAA 58.817 41.667 0.00 0.00 0.00 3.91
414 415 4.224147 TGCCTGGTCTAACAATAACTAGCA 59.776 41.667 0.00 0.00 0.00 3.49
415 416 4.766375 TGCCTGGTCTAACAATAACTAGC 58.234 43.478 0.00 0.00 0.00 3.42
416 417 6.640518 TCTTGCCTGGTCTAACAATAACTAG 58.359 40.000 0.00 0.00 0.00 2.57
417 418 6.614694 TCTTGCCTGGTCTAACAATAACTA 57.385 37.500 0.00 0.00 0.00 2.24
418 419 5.499004 TCTTGCCTGGTCTAACAATAACT 57.501 39.130 0.00 0.00 0.00 2.24
419 420 6.759497 AATCTTGCCTGGTCTAACAATAAC 57.241 37.500 0.00 0.00 0.00 1.89
420 421 6.542370 GCTAATCTTGCCTGGTCTAACAATAA 59.458 38.462 0.00 0.00 0.00 1.40
421 422 6.055588 GCTAATCTTGCCTGGTCTAACAATA 58.944 40.000 0.00 0.00 0.00 1.90
436 437 3.120060 GCGATATTGGCCTGCTAATCTTG 60.120 47.826 3.32 0.93 0.00 3.02
475 476 1.261619 GCACGTACATGCCATCTTAGC 59.738 52.381 1.60 0.00 39.86 3.09
494 495 7.355332 ACAATTTGCTGAATGTTTCTAATGC 57.645 32.000 0.00 0.00 0.00 3.56
518 519 5.185249 AGCTCCGTTTCTCATCTGTTTACTA 59.815 40.000 0.00 0.00 0.00 1.82
537 538 2.293170 GGGTGAAAGATTAGCAGCTCC 58.707 52.381 0.00 0.00 0.00 4.70
565 566 5.499139 TTCACAGGAAATCAACAGTGTTC 57.501 39.130 5.27 0.00 0.00 3.18
596 597 9.859427 ACATTTCAGTTTGATGTTTGTATATGG 57.141 29.630 0.00 0.00 30.22 2.74
600 601 9.467258 CTTCACATTTCAGTTTGATGTTTGTAT 57.533 29.630 0.00 0.00 32.01 2.29
601 602 8.681806 TCTTCACATTTCAGTTTGATGTTTGTA 58.318 29.630 0.00 0.00 32.01 2.41
602 603 7.546358 TCTTCACATTTCAGTTTGATGTTTGT 58.454 30.769 0.00 0.00 32.01 2.83
603 604 7.990541 TCTTCACATTTCAGTTTGATGTTTG 57.009 32.000 0.00 0.00 32.01 2.93
604 605 7.654520 CCATCTTCACATTTCAGTTTGATGTTT 59.345 33.333 0.00 0.00 32.01 2.83
605 606 7.014518 TCCATCTTCACATTTCAGTTTGATGTT 59.985 33.333 0.00 0.00 32.01 2.71
606 607 6.491062 TCCATCTTCACATTTCAGTTTGATGT 59.509 34.615 0.00 0.00 34.52 3.06
607 608 6.916440 TCCATCTTCACATTTCAGTTTGATG 58.084 36.000 0.00 0.00 0.00 3.07
608 609 6.349944 GCTCCATCTTCACATTTCAGTTTGAT 60.350 38.462 0.00 0.00 0.00 2.57
609 610 5.048504 GCTCCATCTTCACATTTCAGTTTGA 60.049 40.000 0.00 0.00 0.00 2.69
610 611 5.048224 AGCTCCATCTTCACATTTCAGTTTG 60.048 40.000 0.00 0.00 0.00 2.93
611 612 5.075493 AGCTCCATCTTCACATTTCAGTTT 58.925 37.500 0.00 0.00 0.00 2.66
633 1057 8.034804 TGCAGGTATATTGCACATACTACATAG 58.965 37.037 14.31 0.00 45.89 2.23
704 1128 7.451566 ACCTGCCTACTTGAATTTTATTGTTCT 59.548 33.333 0.00 0.00 0.00 3.01
710 1134 5.418840 CCACACCTGCCTACTTGAATTTTAT 59.581 40.000 0.00 0.00 0.00 1.40
717 1141 1.278985 CATCCACACCTGCCTACTTGA 59.721 52.381 0.00 0.00 0.00 3.02
799 1223 4.700213 CAGGATGTTTAATTTGACGGGACT 59.300 41.667 0.00 0.00 0.00 3.85
800 1224 4.674362 GCAGGATGTTTAATTTGACGGGAC 60.674 45.833 0.00 0.00 39.31 4.46
801 1225 3.442273 GCAGGATGTTTAATTTGACGGGA 59.558 43.478 0.00 0.00 39.31 5.14
802 1226 3.192422 TGCAGGATGTTTAATTTGACGGG 59.808 43.478 0.00 0.00 39.31 5.28
803 1227 4.433186 TGCAGGATGTTTAATTTGACGG 57.567 40.909 0.00 0.00 39.31 4.79
805 1229 6.701400 ACAAGTTGCAGGATGTTTAATTTGAC 59.299 34.615 1.81 0.00 39.31 3.18
806 1230 6.815089 ACAAGTTGCAGGATGTTTAATTTGA 58.185 32.000 1.81 0.00 39.31 2.69
807 1231 6.146021 GGACAAGTTGCAGGATGTTTAATTTG 59.854 38.462 1.81 0.00 39.31 2.32
808 1232 6.183360 TGGACAAGTTGCAGGATGTTTAATTT 60.183 34.615 1.81 0.00 39.31 1.82
809 1233 5.304101 TGGACAAGTTGCAGGATGTTTAATT 59.696 36.000 1.81 0.00 39.31 1.40
810 1234 4.832266 TGGACAAGTTGCAGGATGTTTAAT 59.168 37.500 1.81 0.00 39.31 1.40
811 1235 4.211125 TGGACAAGTTGCAGGATGTTTAA 58.789 39.130 1.81 0.00 39.31 1.52
812 1236 3.820467 CTGGACAAGTTGCAGGATGTTTA 59.180 43.478 1.81 0.00 39.98 2.01
866 1290 6.093495 GCTAGTGTTGTGCTAATATTCCAACA 59.907 38.462 14.10 14.10 42.05 3.33
867 1291 6.093495 TGCTAGTGTTGTGCTAATATTCCAAC 59.907 38.462 0.00 2.70 36.74 3.77
868 1292 6.176896 TGCTAGTGTTGTGCTAATATTCCAA 58.823 36.000 0.00 0.00 0.00 3.53
869 1293 5.739959 TGCTAGTGTTGTGCTAATATTCCA 58.260 37.500 0.00 0.00 0.00 3.53
870 1294 6.093495 TGTTGCTAGTGTTGTGCTAATATTCC 59.907 38.462 0.00 0.00 0.00 3.01
871 1295 7.072177 TGTTGCTAGTGTTGTGCTAATATTC 57.928 36.000 0.00 0.00 0.00 1.75
872 1296 7.475015 CATGTTGCTAGTGTTGTGCTAATATT 58.525 34.615 0.00 0.00 0.00 1.28
873 1297 6.458751 GCATGTTGCTAGTGTTGTGCTAATAT 60.459 38.462 0.00 0.00 40.96 1.28
874 1298 5.163764 GCATGTTGCTAGTGTTGTGCTAATA 60.164 40.000 0.00 0.00 40.96 0.98
875 1299 4.379813 GCATGTTGCTAGTGTTGTGCTAAT 60.380 41.667 0.00 0.00 40.96 1.73
876 1300 3.058293 GCATGTTGCTAGTGTTGTGCTAA 60.058 43.478 0.00 0.00 40.96 3.09
877 1301 2.483877 GCATGTTGCTAGTGTTGTGCTA 59.516 45.455 0.00 0.00 40.96 3.49
878 1302 1.267806 GCATGTTGCTAGTGTTGTGCT 59.732 47.619 0.00 0.00 40.96 4.40
879 1303 1.001487 TGCATGTTGCTAGTGTTGTGC 60.001 47.619 0.75 0.00 45.31 4.57
880 1304 2.033174 TGTGCATGTTGCTAGTGTTGTG 59.967 45.455 0.00 0.00 45.31 3.33
881 1305 2.296792 TGTGCATGTTGCTAGTGTTGT 58.703 42.857 0.00 0.00 45.31 3.32
882 1306 3.003585 TCTTGTGCATGTTGCTAGTGTTG 59.996 43.478 0.00 0.00 45.31 3.33
883 1307 3.003689 GTCTTGTGCATGTTGCTAGTGTT 59.996 43.478 0.00 0.00 45.31 3.32
884 1308 2.549754 GTCTTGTGCATGTTGCTAGTGT 59.450 45.455 0.00 0.00 45.31 3.55
906 1330 2.286950 TGCTTCTTGTGTTTGCGTGATC 60.287 45.455 0.00 0.00 0.00 2.92
926 1350 9.631452 CTCCGCATATATGGATAACAGTATATG 57.369 37.037 14.51 0.00 37.06 1.78
931 1355 4.467795 AGCTCCGCATATATGGATAACAGT 59.532 41.667 14.51 0.00 32.83 3.55
932 1356 4.807834 CAGCTCCGCATATATGGATAACAG 59.192 45.833 14.51 0.00 32.83 3.16
933 1357 4.758688 CAGCTCCGCATATATGGATAACA 58.241 43.478 14.51 0.00 32.83 2.41
934 1358 3.557595 GCAGCTCCGCATATATGGATAAC 59.442 47.826 14.51 0.00 32.83 1.89
936 1360 3.033909 AGCAGCTCCGCATATATGGATA 58.966 45.455 14.51 0.00 32.83 2.59
937 1361 1.836166 AGCAGCTCCGCATATATGGAT 59.164 47.619 14.51 0.00 32.83 3.41
939 1363 2.167281 AGTAGCAGCTCCGCATATATGG 59.833 50.000 14.51 4.78 0.00 2.74
941 1365 4.274147 AGTAGTAGCAGCTCCGCATATAT 58.726 43.478 0.00 0.00 0.00 0.86
942 1366 3.687125 AGTAGTAGCAGCTCCGCATATA 58.313 45.455 0.00 0.00 0.00 0.86
943 1367 2.520069 AGTAGTAGCAGCTCCGCATAT 58.480 47.619 0.00 0.00 0.00 1.78
946 1370 1.022735 GTAGTAGTAGCAGCTCCGCA 58.977 55.000 0.00 0.00 0.00 5.69
947 1371 1.310904 AGTAGTAGTAGCAGCTCCGC 58.689 55.000 0.00 0.00 0.00 5.54
948 1372 2.541999 GCAAGTAGTAGTAGCAGCTCCG 60.542 54.545 0.00 0.00 0.00 4.63
949 1373 2.223852 GGCAAGTAGTAGTAGCAGCTCC 60.224 54.545 0.00 0.00 0.00 4.70
950 1374 2.427453 TGGCAAGTAGTAGTAGCAGCTC 59.573 50.000 0.00 0.00 0.00 4.09
951 1375 2.457598 TGGCAAGTAGTAGTAGCAGCT 58.542 47.619 0.00 0.00 0.00 4.24
952 1376 2.930682 GTTGGCAAGTAGTAGTAGCAGC 59.069 50.000 0.00 0.00 0.00 5.25
953 1377 3.522553 GGTTGGCAAGTAGTAGTAGCAG 58.477 50.000 0.00 0.00 0.00 4.24
954 1378 2.235402 GGGTTGGCAAGTAGTAGTAGCA 59.765 50.000 0.00 0.00 0.00 3.49
1009 1433 2.896801 CGGCCAGGAATGCGCATAC 61.897 63.158 25.61 19.47 0.00 2.39
1015 1439 2.825836 CAGGACGGCCAGGAATGC 60.826 66.667 11.69 0.00 36.29 3.56
1043 1467 4.201679 TACCGGCCACGATCGCAG 62.202 66.667 16.60 7.90 44.60 5.18
1058 1482 3.966026 AACGCAGCCTCGTCGCTAC 62.966 63.158 1.23 0.00 42.46 3.58
1238 1665 3.407967 TGAGGTTCCCGATGGCCC 61.408 66.667 0.00 0.00 0.00 5.80
1491 1918 4.752101 GTGAAGCTGTTGTTACTCAGTGAT 59.248 41.667 0.00 0.00 34.57 3.06
1619 2049 1.443194 CTGAACTGTTGCATGCCGC 60.443 57.895 16.68 8.48 42.89 6.53
1664 2094 6.036517 CCAATTGTAGAGAGAAGTTGGAATCG 59.963 42.308 4.43 0.00 37.42 3.34
1836 2272 0.759346 AGCCAACCGATATGAGGGAC 59.241 55.000 0.00 0.00 0.00 4.46
2016 2459 1.196808 TCAAAAGAATTGACGCCGAGC 59.803 47.619 0.00 0.00 0.00 5.03
2169 2612 0.528924 CTCCGGACATGGACGTGTTA 59.471 55.000 0.00 0.00 33.48 2.41
2175 2618 1.473434 GGAATCACTCCGGACATGGAC 60.473 57.143 0.00 0.00 33.37 4.02
2663 3111 9.784531 ACTTATTCATGGTCAGGTTCAATATAG 57.215 33.333 0.00 0.00 0.00 1.31
2788 3244 9.419297 CAATTCAGACAATGATGACAAATTCTT 57.581 29.630 0.00 0.00 37.89 2.52
2990 3458 5.064452 CCAACTGCTGCTAGAGAAATTACAG 59.936 44.000 0.00 0.00 0.00 2.74
3448 3916 5.248248 TGTTTGTAGTGGGATCTTGAGATGA 59.752 40.000 0.00 0.00 34.37 2.92
3720 4188 3.136626 ACAAGTTTTAGTCACCTGGAGCT 59.863 43.478 0.00 0.00 0.00 4.09
3749 4226 6.717413 CCATACTCGAGTGAGAAGTAGTAAC 58.283 44.000 28.12 0.00 45.57 2.50
3753 4234 3.628032 TGCCATACTCGAGTGAGAAGTAG 59.372 47.826 28.12 8.72 45.57 2.57
4099 4586 5.685470 GCTGTTGCATCACTTGTCAGTGG 62.685 52.174 2.61 0.00 43.83 4.00
4165 4652 0.610174 TCTCGTTCTGCTCCATGCTT 59.390 50.000 0.00 0.00 43.37 3.91
4566 5073 2.743664 TCTGATCCGATGCACTTTGTTG 59.256 45.455 0.00 0.00 0.00 3.33
4661 5217 9.925545 TTGTACTACCTAAAGACAGGATATACA 57.074 33.333 0.00 0.00 39.18 2.29
4712 5268 0.317770 GTTTGTGCACATGGACGGTG 60.318 55.000 22.39 0.00 39.39 4.94
4760 5316 3.545724 CAGATTGCCTGTGCTCTCA 57.454 52.632 0.00 0.00 38.10 3.27
4820 5376 9.965902 CCCCTATTGACAGATAGCTTATTTTAT 57.034 33.333 0.00 0.00 0.00 1.40
4821 5377 9.166222 TCCCCTATTGACAGATAGCTTATTTTA 57.834 33.333 0.00 0.00 0.00 1.52
4822 5378 8.045720 TCCCCTATTGACAGATAGCTTATTTT 57.954 34.615 0.00 0.00 0.00 1.82
4823 5379 7.633018 TCCCCTATTGACAGATAGCTTATTT 57.367 36.000 0.00 0.00 0.00 1.40
4824 5380 7.633018 TTCCCCTATTGACAGATAGCTTATT 57.367 36.000 0.00 0.00 0.00 1.40
4825 5381 7.633018 TTTCCCCTATTGACAGATAGCTTAT 57.367 36.000 0.00 0.00 0.00 1.73
4826 5382 7.446106 TTTTCCCCTATTGACAGATAGCTTA 57.554 36.000 0.00 0.00 0.00 3.09
4827 5383 5.975988 TTTCCCCTATTGACAGATAGCTT 57.024 39.130 0.00 0.00 0.00 3.74
4828 5384 5.975988 TTTTCCCCTATTGACAGATAGCT 57.024 39.130 0.00 0.00 0.00 3.32
4829 5385 5.009110 GCTTTTTCCCCTATTGACAGATAGC 59.991 44.000 0.00 0.00 0.00 2.97
4830 5386 6.360618 AGCTTTTTCCCCTATTGACAGATAG 58.639 40.000 0.00 0.00 0.00 2.08
4831 5387 6.327386 AGCTTTTTCCCCTATTGACAGATA 57.673 37.500 0.00 0.00 0.00 1.98
4832 5388 5.198602 AGCTTTTTCCCCTATTGACAGAT 57.801 39.130 0.00 0.00 0.00 2.90
4833 5389 4.657814 AGCTTTTTCCCCTATTGACAGA 57.342 40.909 0.00 0.00 0.00 3.41
4834 5390 6.261826 CAGATAGCTTTTTCCCCTATTGACAG 59.738 42.308 0.00 0.00 0.00 3.51
4835 5391 6.122277 CAGATAGCTTTTTCCCCTATTGACA 58.878 40.000 0.00 0.00 0.00 3.58
4836 5392 6.122964 ACAGATAGCTTTTTCCCCTATTGAC 58.877 40.000 0.00 0.00 0.00 3.18
4837 5393 6.069673 TGACAGATAGCTTTTTCCCCTATTGA 60.070 38.462 0.00 0.00 0.00 2.57
4838 5394 6.122277 TGACAGATAGCTTTTTCCCCTATTG 58.878 40.000 0.00 0.00 0.00 1.90
4839 5395 6.327386 TGACAGATAGCTTTTTCCCCTATT 57.673 37.500 0.00 0.00 0.00 1.73
4840 5396 5.975988 TGACAGATAGCTTTTTCCCCTAT 57.024 39.130 0.00 0.00 0.00 2.57
4841 5397 5.772393 TTGACAGATAGCTTTTTCCCCTA 57.228 39.130 0.00 0.00 0.00 3.53
4842 5398 4.657814 TTGACAGATAGCTTTTTCCCCT 57.342 40.909 0.00 0.00 0.00 4.79
4843 5399 7.404671 TTTATTGACAGATAGCTTTTTCCCC 57.595 36.000 0.00 0.00 0.00 4.81
4983 5539 2.459202 ATTTTGGGCAGGCTGCTTGC 62.459 55.000 35.73 26.32 44.28 4.01
5029 5586 6.538742 TCCGTGATTCTGATTATCTTTTGGAC 59.461 38.462 0.00 0.00 0.00 4.02
5030 5587 6.538742 GTCCGTGATTCTGATTATCTTTTGGA 59.461 38.462 0.00 0.00 0.00 3.53
5031 5588 6.540189 AGTCCGTGATTCTGATTATCTTTTGG 59.460 38.462 0.00 0.00 0.00 3.28
5033 5590 8.696374 TCTAGTCCGTGATTCTGATTATCTTTT 58.304 33.333 0.00 0.00 0.00 2.27
5073 5631 3.251729 TGCAAGCTGTTCTCTGAATGAAC 59.748 43.478 0.00 3.56 42.77 3.18
5163 5733 8.625651 CCTCATATGTACATATCTAGTACCTGC 58.374 40.741 22.81 0.00 40.79 4.85
5182 5752 5.046448 GCTCTCCAGATTCACATCCTCATAT 60.046 44.000 0.00 0.00 0.00 1.78
5185 5755 2.433604 GCTCTCCAGATTCACATCCTCA 59.566 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.